AlfalfaGEDB | Msa0161840

M. sativa cultivar zhongmu-4 / Msa0161840

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161840	XP_024638206.1	94.904	314	9	1	1	307	1	314	0.0	612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161840	sp\|Q9FG08\|ATXR4_ARATH	59.298	285	110	1	29	307	41	325	1.45e-119	349

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161840	A0A396JSM6	94.904	314	9	1	1	307	1	314	0.0	612

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TFs/TRs:

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Gene ID	Type	Classification
Msa0161840	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161840	MtrunA17_Chr1g0176091	94.904	314	9	1	1	307	1	314	0.0	612
Msa0161840	MtrunA17_Chr8g0375381	21.141	298	176	8	41	303	17	290	3.09e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161840	AT5G06620.1	59.298	285	110	1	29	307	41	325	1.48e-120	349
Msa0161840	AT5G06620.2	49.068	161	76	1	29	183	41	201	5.41e-48	161

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Find 100 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACTGATGTACCATTGTT+TGG	0.332721	1_4:+37928397	None:intergenic
AACCTTCATCAATGTCACGG+AGG	0.727757	1_4:+37927922	None:intergenic
AACGCACCAGGGTAAGAGTG+CGG	0.686875	1_4:+37931786	None:intergenic
AAGAGGGGTTCAACTTGCTA+AGG	0.581272	1_4:-37928575	Msa0161840:CDS
AAGGGAGACTTGGATGGGAG+GGG	0.485224	1_4:+37931982	None:intergenic
AATATTAAGTGGTTGGATAC+AGG	0.402577	1_4:-37926100	Msa0161840:three_prime_UTR
AATCATCTCATGTGTCAAAT+TGG	0.302224	1_4:+37929141	None:intergenic
AATTGTAGTAGGTGCTTGCA+TGG	0.611543	1_4:-37926164	Msa0161840:CDS
AATTTCCCTTTCTGGTAAAG+CGG	0.590443	1_4:-37929225	Msa0161840:CDS
ACAAACCTTCATCAATGTCA+CGG	0.645369	1_4:+37927919	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATATAAATACCAATGGA+GGG	-	chr1_4:37926390-37926409	Msa0161840:intron	30.0%
TGGGAATATTAACAATGTAG+GGG	-	chr1_4:37926454-37926473	Msa0161840:intron	30.0%
ATAGAAATTCATCCTAGCTT+TGG	+	chr1_4:37926777-37926796	None:intergenic	30.0%
ATGAGTTTGCAGAAAAGAAA+TGG	-	chr1_4:37926893-37926912	Msa0161840:intron	30.0%
ATCATGCTATCATATGATCT+TGG	-	chr1_4:37927004-37927023	Msa0161840:intron	30.0%
TATTAAGGTTCCCTAAGTTT+GGG	+	chr1_4:37927077-37927096	None:intergenic	30.0%
TTATTAAGGTTCCCTAAGTT+TGG	+	chr1_4:37927078-37927097	None:intergenic	30.0%
TTTCTCAGGAGACTTTATTA+AGG	+	chr1_4:37927092-37927111	None:intergenic	30.0%
ATATTGTTAATCGCAGATAG+TGG	-	chr1_4:37927136-37927155	Msa0161840:intron	30.0%
ATGTTGAGATGAAAGCAAAT+TGG	-	chr1_4:37927559-37927578	Msa0161840:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	37925860	37932117	37925860	ID=Msa0161840;Name=Msa0161840
chr1_4	mRNA	37925860	37932117	37925860	ID=Msa0161840-mRNA-1;Parent=Msa0161840;Name=Msa0161840-mRNA-1;_AED=0.18;_eAED=0.18;_QI=28\|1\|1\|1\|1\|1\|7\|297\|307
chr1_4	exon	37925860	37926275	37925860	ID=Msa0161840-mRNA-1:exon:11106;Parent=Msa0161840-mRNA-1
chr1_4	exon	37927925	37927996	37927925	ID=Msa0161840-mRNA-1:exon:11105;Parent=Msa0161840-mRNA-1
chr1_4	exon	37928243	37928425	37928243	ID=Msa0161840-mRNA-1:exon:11104;Parent=Msa0161840-mRNA-1
chr1_4	exon	37928532	37928601	37928532	ID=Msa0161840-mRNA-1:exon:11103;Parent=Msa0161840-mRNA-1
chr1_4	exon	37929135	37929261	37929135	ID=Msa0161840-mRNA-1:exon:11102;Parent=Msa0161840-mRNA-1
chr1_4	exon	37930373	37930428	37930373	ID=Msa0161840-mRNA-1:exon:11101;Parent=Msa0161840-mRNA-1
chr1_4	exon	37931793	37932117	37931793	ID=Msa0161840-mRNA-1:exon:11100;Parent=Msa0161840-mRNA-1
chr1_4	five_prime_UTR	37932090	37932117	37932090	ID=Msa0161840-mRNA-1:five_prime_utr;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37931793	37932089	37931793	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37930373	37930428	37930373	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37929135	37929261	37929135	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37928532	37928601	37928532	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37928243	37928425	37928243	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37927925	37927996	37927925	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	CDS	37926157	37926275	37926157	ID=Msa0161840-mRNA-1:cds;Parent=Msa0161840-mRNA-1
chr1_4	three_prime_UTR	37925860	37926156	37925860	ID=Msa0161840-mRNA-1:three_prime_utr;Parent=Msa0161840-mRNA-1

Gene Sequence

>Msa0161840

ATGGCACTGTCACGATCACTTCTCCGCTTAGCTTCTTCACGTTTCACTAAACCACTTCACCTCTTCACATTCTCAACCCAGAAGCCCCCTCCCATCCAAGTCTCCCTTACAGACACAGTGGGTCGCGCCGTATTCGCAACTCGCCCAATCCCTACTGGAGATCTCATCCACACCGCCGAACCTGCCGTCTGCCACCCTTCACCTTCCGCTCCCCACCCCGTCTGTTACTCTTGCCTCGCCAGACTCCCTAACCTCTCCTCCCCCTTTTGTTCTCACCGTTGCCGCACTCTTACCCTGGAATATTACAATGTTGAGATGAAAGCAAATTGGATGGATTTTAATAACTATTGCCGGAACCGAGGTTTAAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGATAGTCTTGACATACTTCAACCTGCCAATTTGACACATGAGATGATTTTAGAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAAATTGCTTTTTTAACCAAACAATGGTACATCAGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCCGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTCCTTCCTTCTATAATCATGACTGTGATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGTATGGACCGCGATGCTCGGCGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGTAGGTGCTTGCATGGTGATTAG

Protein sequence

>Msa0161840

MALSRSLLRLASSRFTKPLHLFTFSTQKPPPIQVSLTDTVGRAVFATRPIPTGDLIHTAEPAVCHPSPSAPHPVCYSCLARLPNLSSPFCSHRCRTLTLEYYNVEMKANWMDFNNYCRNRGLKFPFLVKRLACMIISGVARSDSLDILQPANLTHEMILEMEEGFNLLRNAFTKALIADEQIAFLTKQWYISVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAVAKLKALRDIDEGEELRICYIDASMDRDARRELLFQGFGFQCNCSRCLHGD*