Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161940 | XP_003590392.1 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161940 | sp|Q9LSA9|PUMPK_ARATH | 53.906 | 256 | 113 | 2 | 254 | 507 | 78 | 330 | 1.45e-89 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161940 | A7UQU8 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0161940 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161940 | MtrunA17_Chr1g0179531 | 99.414 | 512 | 2 | 1 | 1 | 511 | 1 | 512 | 0.0 | 1060 |
| Msa0161940 | MtrunA17_Chr8g0384081 | 50.758 | 264 | 120 | 3 | 251 | 507 | 56 | 316 | 2.41e-87 | 271 |
| Msa0161940 | MtrunA17_Chr2g0283871 | 35.644 | 101 | 59 | 3 | 132 | 227 | 23 | 122 | 1.21e-15 | 77.8 |
| Msa0161940 | MtrunA17_Chr4g0041151 | 36.275 | 102 | 58 | 3 | 132 | 227 | 31 | 131 | 1.26e-15 | 77.8 |
| Msa0161940 | MtrunA17_Chr1g0164461 | 41.346 | 104 | 51 | 4 | 120 | 220 | 27 | 123 | 1.51e-15 | 75.1 |
| Msa0161940 | MtrunA17_Chr6g0485241 | 37.255 | 102 | 61 | 2 | 130 | 229 | 128 | 228 | 2.26e-15 | 77.8 |
| Msa0161940 | MtrunA17_Chr3g0082261 | 41.346 | 104 | 51 | 4 | 120 | 220 | 27 | 123 | 1.69e-14 | 74.7 |
| Msa0161940 | MtrunA17_Chr5g0402321 | 34.000 | 100 | 60 | 2 | 132 | 225 | 22 | 121 | 1.43e-13 | 70.5 |
| Msa0161940 | MtrunA17_Chr4g0066271 | 38.000 | 100 | 58 | 2 | 132 | 227 | 117 | 216 | 3.29e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161940 | AT3G10030.1 | 56.727 | 550 | 184 | 7 | 1 | 508 | 1 | 538 | 0.0 | 590 |
| Msa0161940 | AT3G10030.2 | 55.470 | 521 | 178 | 7 | 1 | 479 | 1 | 509 | 0.0 | 543 |
| Msa0161940 | AT3G18680.1 | 53.906 | 256 | 113 | 2 | 254 | 507 | 78 | 330 | 1.47e-90 | 280 |
| Msa0161940 | AT3G18680.2 | 47.751 | 289 | 113 | 3 | 254 | 507 | 78 | 363 | 2.32e-83 | 263 |
| Msa0161940 | AT3G54390.1 | 36.441 | 118 | 65 | 3 | 126 | 241 | 32 | 141 | 3.41e-17 | 82.8 |
| Msa0161940 | AT3G54390.2 | 36.441 | 118 | 65 | 3 | 126 | 241 | 48 | 157 | 3.42e-17 | 82.8 |
| Msa0161940 | AT3G58630.1 | 30.872 | 149 | 78 | 3 | 132 | 255 | 26 | 174 | 2.68e-16 | 80.5 |
| Msa0161940 | AT3G58630.2 | 30.872 | 149 | 78 | 3 | 132 | 255 | 26 | 174 | 3.27e-16 | 80.1 |
| Msa0161940 | AT3G14180.1 | 37.607 | 117 | 66 | 4 | 111 | 223 | 63 | 176 | 6.12e-16 | 80.5 |
| Msa0161940 | AT3G24490.1 | 31.933 | 119 | 72 | 3 | 105 | 220 | 65 | 177 | 1.43e-12 | 69.3 |
| Msa0161940 | AT2G44730.1 | 38.043 | 92 | 53 | 2 | 132 | 219 | 64 | 155 | 2.35e-12 | 68.9 |
Find 175 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATACGAAAACGGAATT+TGG | 0.135590 | 1_4:+38043857 | None:intergenic |
| GACCCCAGGACATGTTTATT+TGG | 0.173827 | 1_4:+38048479 | None:intergenic |
| AAAGGAAGAGTTGTTATATT+TGG | 0.225653 | 1_4:-38044790 | Msa0161940:CDS |
| TTGACAATGCTTTGGACTTC+AGG | 0.272821 | 1_4:+38046296 | None:intergenic |
| CAACAAATTCAATTATTGTT+AGG | 0.282934 | 1_4:-38043938 | Msa0161940:three_prime_UTR |
| CGACATATCTGCTGCTCTTC+GGG | 0.289993 | 1_4:-38044728 | Msa0161940:CDS |
| ATATTTGGTGGCATTGGTTT+TGG | 0.302206 | 1_4:-38044775 | Msa0161940:CDS |
| GGGTATGAGGGAACGGCGTT+AGG | 0.311847 | 1_4:+38048337 | None:intergenic |
| CTTTCGAGCACATATCCTTC+AGG | 0.327576 | 1_4:-38044492 | Msa0161940:CDS |
| ATTAGTGGATCAGCACTTAC+TGG | 0.329740 | 1_4:-38046244 | Msa0161940:CDS |
| GAACAACTCTCCGCCATCTA+AGG | 0.331588 | 1_4:+38046272 | None:intergenic |
| CGGTAAAATGCGAACAGATA+TGG | 0.336097 | 1_4:-38043703 | Msa0161940:three_prime_UTR |
| GGTGGTGAGGTGCGAAGGTT+TGG | 0.337687 | 1_4:+38048209 | None:intergenic |
| ACCCCAGGACATGTTTATTT+GGG | 0.361054 | 1_4:+38048480 | None:intergenic |
| TGCGAGGAAAATGCCATTCC+TGG | 0.369901 | 1_4:-38044418 | Msa0161940:intron |
| CCGACATATCTGCTGCTCTT+CGG | 0.371066 | 1_4:-38044729 | Msa0161940:CDS |
| TATTGTTGGGAATTCGCTTC+CGG | 0.371702 | 1_4:-38047633 | Msa0161940:CDS |
| GTGGCAAGTATCCAACTTAA+TGG | 0.380113 | 1_4:+38043906 | None:intergenic |
| CGAAGGTTTGGTGGAGGTGG+TGG | 0.380551 | 1_4:+38048221 | None:intergenic |
| TCAATCAACTTTAGAGAAGA+TGG | 0.381962 | 1_4:-38044899 | Msa0161940:CDS |
| ACGGCGGAGAAGACGGTGTA+AGG | 0.382984 | 1_4:+38048316 | None:intergenic |
| AACCTTAGGGTCAATATTGC+AGG | 0.385341 | 1_4:+38046213 | None:intergenic |
| GTCTAGAGGTGTCACCTCTA+TGG | 0.386263 | 1_4:-38044461 | Msa0161940:CDS |
| TCTAAGGTTTGACAATGCTT+TGG | 0.391295 | 1_4:+38046288 | None:intergenic |
| TTTCTGCTAGTCATTGGCCT+TGG | 0.394011 | 1_4:-38047673 | Msa0161940:CDS |
| CTTAGATTGCCTAGGTGAAA+TGG | 0.396098 | 1_4:+38047571 | None:intergenic |
| CCACCGTTACCGCTTGAAAC+TGG | 0.397009 | 1_4:+38047962 | None:intergenic |
| TAGCAGTAGCCTTCCTTTGT+CGG | 0.402109 | 1_4:-38043723 | Msa0161940:three_prime_UTR |
| AGCATACGAAAACGGAATTT+GGG | 0.404272 | 1_4:+38043858 | None:intergenic |
| GTTGCATTTCTGCTAGTCAT+TGG | 0.405063 | 1_4:-38047679 | Msa0161940:CDS |
| GGCACACTTATTGACCAAAC+TGG | 0.406605 | 1_4:-38043988 | Msa0161940:CDS |
| GTTTACTTGACCTCCACTGC+TGG | 0.412531 | 1_4:+38046321 | None:intergenic |
| GTTAGCTTATTGCTCCAGTT+TGG | 0.414252 | 1_4:+38043974 | None:intergenic |
| AAGCATTGTCAAACCTTAGA+TGG | 0.420124 | 1_4:-38046285 | Msa0161940:CDS |
| GGAAATTAGAACCATTAAGT+TGG | 0.422247 | 1_4:-38043917 | Msa0161940:three_prime_UTR |
| GAGAGTGTTGGTTGTGGTGG+TGG | 0.425277 | 1_4:+38048191 | None:intergenic |
| GAAGACGGTGTAAGGGTATG+AGG | 0.427663 | 1_4:+38048324 | None:intergenic |
| CTTCAGGTAGCAATTGTTGT+TGG | 0.428109 | 1_4:-38045906 | Msa0161940:intron |
| AAGCAGATGGAACATATTGT+TGG | 0.431908 | 1_4:-38047647 | Msa0161940:CDS |
| GGTGAGGTGCGAAGGTTTGG+TGG | 0.432109 | 1_4:+38048212 | None:intergenic |
| GTGCGAAGGTTTGGTGGAGG+TGG | 0.433564 | 1_4:+38048218 | None:intergenic |
| GTTGCAATAGCTTCCCGTCT+TGG | 0.434010 | 1_4:-38046021 | Msa0161940:CDS |
| GGAATCTAAGAGGAAGAGAT+TGG | 0.434366 | 1_4:-38047826 | Msa0161940:CDS |
| GGAAGAGTTGTTATATTTGG+TGG | 0.436188 | 1_4:-38044787 | Msa0161940:CDS |
| CGTTTGCTGAACCGTACAAT+AGG | 0.437374 | 1_4:-38044837 | Msa0161940:CDS |
| TGCGATGCAACGACGTCGTA+TGG | 0.438138 | 1_4:-38048007 | Msa0161940:CDS |
| GTTGTTATATTTGGTGGCAT+TGG | 0.439242 | 1_4:-38044781 | Msa0161940:CDS |
| GGTGGAGGTGGTGGTGAGAG+TGG | 0.439677 | 1_4:+38048230 | None:intergenic |
| CTCAAAGGTACCAACGTAGA+TGG | 0.443114 | 1_4:-38044550 | Msa0161940:CDS |
| AGCAGATGGAACATATTGTT+GGG | 0.444247 | 1_4:-38047646 | Msa0161940:CDS |
| GACGGAGGTGGTGATGTGTT+TGG | 0.447470 | 1_4:+38048138 | None:intergenic |
| TGGCCCAAATAAACATGTCC+TGG | 0.450637 | 1_4:-38048483 | Msa0161940:five_prime_UTR |
| CTGCTCTGCAGTTAATGCTC+AGG | 0.451851 | 1_4:-38044578 | Msa0161940:intron |
| AGGTTGATAATTTGAAGAAA+AGG | 0.452877 | 1_4:-38047733 | Msa0161940:CDS |
| GATGTACTGCATACCAAGTT+GGG | 0.454334 | 1_4:-38045830 | Msa0161940:intron |
| AGTTGGATACTTGCCACCAC+TGG | 0.455473 | 1_4:-38043900 | Msa0161940:three_prime_UTR |
| ATAGAAAAGATCGAGAAGAA+TGG | 0.456281 | 1_4:-38047913 | Msa0161940:CDS |
| TCTATACTCTGCTCCTACTC+CGG | 0.456827 | 1_4:+38047931 | None:intergenic |
| GTCGTCGTCGGCGACGGCGG+CGG | 0.456922 | 1_4:+38048114 | None:intergenic |
| CTTCTCCGCCGTTAATCTCA+TGG | 0.457893 | 1_4:-38048305 | Msa0161940:exon |
| TTTATCATCATCAGCAAACT+TGG | 0.459547 | 1_4:+38047610 | None:intergenic |
| CATCTACGTTGGTACCTTTG+AGG | 0.460201 | 1_4:+38044551 | None:intergenic |
| GGTATGAGGGAACGGCGTTA+GGG | 0.465972 | 1_4:+38048338 | None:intergenic |
| GAGAGGCATAGAATGAATAA+TGG | 0.466819 | 1_4:-38047701 | Msa0161940:CDS |
| GTGGTGGTGGTGAGGTGCGA+AGG | 0.467732 | 1_4:+38048204 | None:intergenic |
| TCCTTTCTCAAGATGCCTGA+TGG | 0.470108 | 1_4:+38044807 | None:intergenic |
| GTCGGCGACGGCGGCGGAGA+CGG | 0.470366 | 1_4:+38048120 | None:intergenic |
| ACAATAGGCAACGGGCCATC+AGG | 0.470864 | 1_4:-38044822 | Msa0161940:CDS |
| TTGGCCTTGGTTTAAGCAGA+TGG | 0.477301 | 1_4:-38047660 | Msa0161940:CDS |
| GTCTCCGTCGTCGTCGGCGA+CGG | 0.482206 | 1_4:+38048108 | None:intergenic |
| GTGATTAACCTTACCCAACT+TGG | 0.488217 | 1_4:+38045817 | None:intergenic |
| CAGGTAGCAATTGTTGTTGG+AGG | 0.488440 | 1_4:-38045903 | Msa0161940:CDS |
| GAATCTAAGAGGAAGAGATT+GGG | 0.489819 | 1_4:-38047825 | Msa0161940:CDS |
| GAGATTAACGGCGGAGAAGA+CGG | 0.496796 | 1_4:+38048309 | None:intergenic |
| ATTTCTTCTGTGGAGATGCA+TGG | 0.497325 | 1_4:-38045875 | Msa0161940:CDS |
| GGTGAGAGTGTTGGTTGTGG+TGG | 0.497862 | 1_4:+38048188 | None:intergenic |
| TGCTGCTCTTCGGGCTTCAG+AGG | 0.502112 | 1_4:-38044719 | Msa0161940:CDS |
| TTGGGAAGAAGTAGCTTCAA+TGG | 0.503405 | 1_4:-38047807 | Msa0161940:CDS |
| TTTCGAGCACATATCCTTCA+GGG | 0.508101 | 1_4:-38044491 | Msa0161940:CDS |
| GGCCCAAATAAACATGTCCT+GGG | 0.510405 | 1_4:-38048482 | Msa0161940:five_prime_UTR |
| GACGGCGGCGGAGACGGAGG+TGG | 0.510775 | 1_4:+38048126 | None:intergenic |
| TAAAGTTGATTGAAGCAGTA+AGG | 0.510796 | 1_4:+38044909 | None:intergenic |
| TCTTAAATTTGTCAGCATGA+TGG | 0.513943 | 1_4:-38044947 | Msa0161940:intron |
| ATAGTATTGCTTACCAGGAA+TGG | 0.515872 | 1_4:+38044405 | None:intergenic |
| GATGCATGGGTAACTGCAAC+TGG | 0.517940 | 1_4:-38045861 | Msa0161940:CDS |
| GGAGGTGGTGGTGAGAGTGG+TGG | 0.518583 | 1_4:+38048233 | None:intergenic |
| ACAACATAAGCATACGAAAA+CGG | 0.521147 | 1_4:+38043850 | None:intergenic |
| GCCATCAGGCATCTTGAGAA+AGG | 0.521422 | 1_4:-38044808 | Msa0161940:CDS |
| CTGTACCTCCACACCAAGAC+GGG | 0.522588 | 1_4:+38046008 | None:intergenic |
| GGTGGTGAGAGTGTTGGTTG+TGG | 0.522902 | 1_4:+38048185 | None:intergenic |
| GCAAGAAGCCATGAGATTAA+CGG | 0.522956 | 1_4:+38048297 | None:intergenic |
| TTATTACCACGTAGGAGAGA+TGG | 0.526353 | 1_4:+38048454 | None:intergenic |
| ATGGCCCGTTGCCTATTGTA+CGG | 0.527865 | 1_4:+38044826 | None:intergenic |
| AGCTTCCCGTCTTGGTGTGG+AGG | 0.534343 | 1_4:-38046013 | Msa0161940:intron |
| TCCGTCGTCGTCGGCGACGG+CGG | 0.535708 | 1_4:+38048111 | None:intergenic |
| AGATGTACTGCATACCAAGT+TGG | 0.537226 | 1_4:-38045831 | Msa0161940:CDS |
| TGCCTAGGTGAAATGGAAGC+AGG | 0.537551 | 1_4:+38047578 | None:intergenic |
| AACATTTCAAAAGCTTTGTG+TGG | 0.537883 | 1_4:-38044021 | Msa0161940:CDS |
| TCATCATCAGCAAACTTGGC+CGG | 0.538573 | 1_4:+38047614 | None:intergenic |
| TACCTGCAATATTGACCCTA+AGG | 0.540236 | 1_4:-38046215 | Msa0161940:intron |
| TTTCTTCTGTGGAGATGCAT+GGG | 0.540958 | 1_4:-38045874 | Msa0161940:CDS |
| GGAGGTCGTAATTTCTTCTG+TGG | 0.542254 | 1_4:-38045885 | Msa0161940:CDS |
| CTACCAGCGTCATCGTCGAA+TGG | 0.542605 | 1_4:+38048064 | None:intergenic |
| CAATCAACTTTAGAGAAGAT+GGG | 0.544338 | 1_4:-38044898 | Msa0161940:CDS |
| AGGGTCAATATTGCAGGTAT+CGG | 0.548147 | 1_4:+38046219 | None:intergenic |
| AGGTGGTGATGTGTTTGGAT+TGG | 0.554894 | 1_4:+38048143 | None:intergenic |
| ATCTGTGAATAATTTACAGA+GGG | 0.557426 | 1_4:+38043768 | None:intergenic |
| TTTCACCTAGGCAATCTAAG+AGG | 0.557596 | 1_4:-38047568 | Msa0161940:intron |
| CGGCGGAGAAGACGGTGTAA+GGG | 0.558619 | 1_4:+38048317 | None:intergenic |
| GTTTCAAGCGGTAACGGTGG+AGG | 0.559105 | 1_4:-38047959 | Msa0161940:CDS |
| CTGAATCGAGGGAATCTAAG+AGG | 0.560567 | 1_4:-38047836 | Msa0161940:CDS |
| TGAACCGTACAATAGGCAAC+GGG | 0.562366 | 1_4:-38044830 | Msa0161940:CDS |
| GATATGTCGGTTGAGAAAAG+TGG | 0.562539 | 1_4:+38044742 | None:intergenic |
| GGCGACGGCGGCGGAGACGG+AGG | 0.562987 | 1_4:+38048123 | None:intergenic |
| AAACCAGTTTCAAGCGGTAA+CGG | 0.565973 | 1_4:-38047965 | Msa0161940:CDS |
| AGAAAAGGTATAAGCTAGAG+AGG | 0.566023 | 1_4:-38047718 | Msa0161940:CDS |
| AATGCTCAGGCTGTCCTCAA+AGG | 0.568956 | 1_4:-38044565 | Msa0161940:CDS |
| GCTGCTCTTCGGGCTTCAGA+GGG | 0.570088 | 1_4:-38044718 | Msa0161940:intron |
| GCTCTACAATTTCCCAGTGG+TGG | 0.572078 | 1_4:+38043887 | None:intergenic |
| CGTATGGATTCAACAACAAA+CGG | 0.572327 | 1_4:-38047991 | Msa0161940:CDS |
| GTTGGATACTTGCCACCACT+GGG | 0.572627 | 1_4:-38043899 | Msa0161940:three_prime_UTR |
| AGAAGTGGTGGTGAGAGTGT+TGG | 0.573733 | 1_4:+38048179 | None:intergenic |
| TGTTGGTTGTGGTGGTGGTG+AGG | 0.574258 | 1_4:+38048196 | None:intergenic |
| ACAAACTTCAGTTTCAATGC+AGG | 0.580585 | 1_4:-38044860 | Msa0161940:CDS |
| GGTGGAGGAAGCGCCGGAGT+AGG | 0.580586 | 1_4:-38047944 | Msa0161940:CDS |
| GGTGTCGTCTCCGTCGTCGT+CGG | 0.581790 | 1_4:+38048102 | None:intergenic |
| AACTTCATTTGAAACTAACA+TGG | 0.588078 | 1_4:+38046041 | None:intergenic |
| GGTGTAAGGGTATGAGGGAA+CGG | 0.589867 | 1_4:+38048330 | None:intergenic |
| TTAAACCTCTTAGATTGCCT+AGG | 0.591137 | 1_4:+38047563 | None:intergenic |
| GCCGCCGTCGCCGACGACGA+CGG | 0.592641 | 1_4:-38048112 | Msa0161940:CDS |
| GTGGCTACGTCCAGCAGTGG+AGG | 0.596879 | 1_4:-38046331 | Msa0161940:CDS |
| TAGGAGAGATGGAGGACCCC+AGG | 0.598322 | 1_4:+38048465 | None:intergenic |
| AATCCATTCGACGATGACGC+TGG | 0.603457 | 1_4:-38048067 | Msa0161940:CDS |
| GGTAACGGTGGAGGAAGCGC+CGG | 0.603519 | 1_4:-38047950 | Msa0161940:CDS |
| GAGGTGCGAAGGTTTGGTGG+AGG | 0.605729 | 1_4:+38048215 | None:intergenic |
| GCGTTAGGGAAAAGAGAAGA+AGG | 0.608106 | 1_4:+38048352 | None:intergenic |
| TTCAGGGAGCTAGTGTCTAG+AGG | 0.610453 | 1_4:-38044475 | Msa0161940:CDS |
| CAGGGCTGACATATCCATAG+AGG | 0.610631 | 1_4:+38044447 | None:intergenic |
| CTGAACCGTACAATAGGCAA+CGG | 0.610750 | 1_4:-38044831 | Msa0161940:CDS |
| AATAGCTTCCCGTCTTGGTG+TGG | 0.611957 | 1_4:-38046016 | Msa0161940:CDS |
| TGTTCCATCTGCTTAAACCA+AGG | 0.614998 | 1_4:+38047656 | None:intergenic |
| GGAGACGACACCGATGACTA+CGG | 0.620045 | 1_4:-38048091 | Msa0161940:CDS |
| GGAGTGGCTACGTCCAGCAG+TGG | 0.623352 | 1_4:-38046334 | Msa0161940:CDS |
| GAATGGATTACCGTAGTCAT+CGG | 0.625254 | 1_4:+38048081 | None:intergenic |
| AATTTACTCAGCTGAATCGA+GGG | 0.625957 | 1_4:-38047847 | Msa0161940:CDS |
| AAATTTACTCAGCTGAATCG+AGG | 0.626415 | 1_4:-38047848 | Msa0161940:CDS |
| CCGAAGAGCAGCAGATATGT+CGG | 0.627184 | 1_4:+38044729 | None:intergenic |
| GGACTGAAGCTGTGGAGAAG+TGG | 0.627526 | 1_4:+38048164 | None:intergenic |
| GTCATATACACCATCTACGT+TGG | 0.629232 | 1_4:+38044540 | None:intergenic |
| TCTAGACACTAGCTCCCTGA+AGG | 0.629448 | 1_4:+38044477 | None:intergenic |
| AAGACGGTGTAAGGGTATGA+GGG | 0.631338 | 1_4:+38048325 | None:intergenic |
| ACTGTACCTCCACACCAAGA+CGG | 0.637094 | 1_4:+38046007 | None:intergenic |
| TTTGGATTGGACTGAAGCTG+TGG | 0.637149 | 1_4:+38048156 | None:intergenic |
| TGAGAATCAATCGAAGAGTG+TGG | 0.640729 | 1_4:-38047771 | Msa0161940:CDS |
| CCAGTTTCAAGCGGTAACGG+TGG | 0.641657 | 1_4:-38047962 | Msa0161940:CDS |
| TGCTTATGTTGTTTACGTGG+TGG | 0.643523 | 1_4:-38043839 | Msa0161940:three_prime_UTR |
| GCTTTGTGTGGAGAACAAGT+TGG | 0.647871 | 1_4:-38044009 | Msa0161940:CDS |
| CTGAAGCTGTGGAGAAGTGG+TGG | 0.656134 | 1_4:+38048167 | None:intergenic |
| TTCCTGCTTCCATTTCACCT+AGG | 0.659097 | 1_4:-38047580 | Msa0161940:CDS |
| TGCTTTATTTATTACCACGT+AGG | 0.660728 | 1_4:+38048446 | None:intergenic |
| TAGCTTCAATGGTGAGTGAG+CGG | 0.663163 | 1_4:-38047796 | Msa0161940:CDS |
| CATCTGTGAATAATTTACAG+AGG | 0.665307 | 1_4:+38043767 | None:intergenic |
| CGGTCAAAACCAGTTTCAAG+CGG | 0.669447 | 1_4:-38047971 | Msa0161940:CDS |
| GGTGGTTGTTATCGTCGTGG+AGG | 0.671957 | 1_4:+38048251 | None:intergenic |
| TTACCACGTAGGAGAGATGG+AGG | 0.676577 | 1_4:+38048457 | None:intergenic |
| GTATGCTTATGTTGTTTACG+TGG | 0.678478 | 1_4:-38043842 | Msa0161940:three_prime_UTR |
| CATTGTCAAACCTTAGATGG+CGG | 0.680970 | 1_4:-38046282 | Msa0161940:CDS |
| TGTGGAACAGTGTAAGAACA+AGG | 0.689866 | 1_4:-38047753 | Msa0161940:CDS |
| AGTGGTGGTTGTTATCGTCG+TGG | 0.691782 | 1_4:+38048248 | None:intergenic |
| GCCCAAATAAACATGTCCTG+GGG | 0.697829 | 1_4:-38048481 | Msa0161940:five_prime_UTR |
| GAAGATGTGTGATAACGTTG+TGG | 0.699211 | 1_4:+38048376 | None:intergenic |
| GTCAGCCCTGACATTCTGCG+AGG | 0.718203 | 1_4:-38044434 | Msa0161940:CDS |
| AGAAGCCATGAGATTAACGG+CGG | 0.721002 | 1_4:+38048300 | None:intergenic |
| GGTCCTCCATCTCTCCTACG+TGG | 0.737509 | 1_4:-38048460 | Msa0161940:five_prime_UTR |
| TCAGCTCTACAATTTCCCAG+TGG | 0.739386 | 1_4:+38043884 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAAAATTATATAGAA+AGG | + | chr1_4:38047462-38047481 | None:intergenic | 10.0% |
| !!! | ATTTTACAGAAATATAATAA+AGG | + | chr1_4:38048335-38048354 | None:intergenic | 10.0% |
| !!! | AAACATAAAATTTTCAGATT+CGG | + | chr1_4:38044754-38044773 | None:intergenic | 15.0% |
| !!! | CGTATTTAGTTTATTAATTA+TGG | - | chr1_4:38044967-38044986 | Msa0161940:intron | 15.0% |
| !! | TTCAATGTATATTCTATTTA+TGG | - | chr1_4:38046355-38046374 | Msa0161940:intron | 15.0% |
| !!! | CTCATTTTAAAAAAGAAAAT+TGG | - | chr1_4:38046649-38046668 | Msa0161940:intron | 15.0% |
| !! | TAAAGATTAAAAAGATCTTA+TGG | + | chr1_4:38047107-38047126 | None:intergenic | 15.0% |
| !!! | TAAGATCTTTTTAATCTTTA+TGG | - | chr1_4:38047107-38047126 | Msa0161940:intron | 15.0% |
| !! | TTGATTTAGTTAAATGCTTA+TGG | - | chr1_4:38044619-38044638 | Msa0161940:intron | 20.0% |
| !!! | TTTGCTGTTTTTGTTTTAAT+TGG | - | chr1_4:38044791-38044810 | Msa0161940:CDS | 20.0% |
| !! | TTTGATGTGCTAAAAAATAA+GGG | - | chr1_4:38044847-38044866 | Msa0161940:CDS | 20.0% |
| !! | ATCTAATTGAATAACAAACA+AGG | + | chr1_4:38045072-38045091 | None:intergenic | 20.0% |
| !!! | ACTTTATTTTGAACTTGATT+TGG | - | chr1_4:38045258-38045277 | Msa0161940:intron | 20.0% |
| !! | ATGCGATATTAGTAAAAATA+CGG | + | chr1_4:38045453-38045472 | None:intergenic | 20.0% |
| !!! | TAATTTGTGAACTTGAAATA+TGG | + | chr1_4:38045598-38045617 | None:intergenic | 20.0% |
| !! | ATATTACAAGAATAAGAACA+GGG | + | chr1_4:38045750-38045769 | None:intergenic | 20.0% |
| !! | AATATTACAAGAATAAGAAC+AGG | + | chr1_4:38045751-38045770 | None:intergenic | 20.0% |
| !! | AATAAATTTAAGCAAGCAAA+TGG | + | chr1_4:38046073-38046092 | None:intergenic | 20.0% |
| !!! | TTCATGTATTTTCTTTTTGA+TGG | + | chr1_4:38046402-38046421 | None:intergenic | 20.0% |
| !!! | AATTGGAAATTTGAACTTTT+AGG | - | chr1_4:38046666-38046685 | Msa0161940:intron | 20.0% |
| !!! | TATATTATTTCTTTTCCAAC+TGG | - | chr1_4:38046753-38046772 | Msa0161940:intron | 20.0% |
| !!! | TTACGACAATGATTTATTTT+TGG | - | chr1_4:38046907-38046926 | Msa0161940:intron | 20.0% |
| !! | TAGATATTTAAATATGCAAC+AGG | + | chr1_4:38047878-38047897 | None:intergenic | 20.0% |
| !! | TGTTGCATATTTAAATATCT+AGG | - | chr1_4:38047877-38047896 | Msa0161940:CDS | 20.0% |
| !!! | TGCTAGTATTTTCTTTTATA+TGG | - | chr1_4:38047948-38047967 | Msa0161940:CDS | 20.0% |
| !!! | GTTTATGAAAATAACCTTTT+GGG | + | chr1_4:38047986-38048005 | None:intergenic | 20.0% |
| !!! | AGTTTATGAAAATAACCTTT+TGG | + | chr1_4:38047987-38048006 | None:intergenic | 20.0% |
| !!! | AGTTGTAGTTTTTAATCTAT+TGG | - | chr1_4:38048091-38048110 | Msa0161940:CDS | 20.0% |
| !! | CAACAAATTCAATTATTGTT+AGG | - | chr1_4:38048205-38048224 | Msa0161940:CDS | 20.0% |
| !!! | AGGTTGATAATTTGAAGAAA+AGG | - | chr1_4:38044410-38044429 | Msa0161940:intron | 25.0% |
| ! | TTAGTTAAATGCTTATGGAT+TGG | - | chr1_4:38044624-38044643 | Msa0161940:intron | 25.0% |
| !! | TTCGATACGTTTAGATTTTA+GGG | - | chr1_4:38044690-38044709 | Msa0161940:intron | 25.0% |
| ! | GTTTGATGTGCTAAAAAATA+AGG | - | chr1_4:38044846-38044865 | Msa0161940:CDS | 25.0% |
| !! | CTTTTTACTTGACATGTTTA+AGG | - | chr1_4:38045128-38045147 | Msa0161940:intron | 25.0% |
| !! | TTTTGATATGTTAGCAAGTT+TGG | - | chr1_4:38045192-38045211 | Msa0161940:intron | 25.0% |
| ! | TTTGATATGTTAGCAAGTTT+GGG | - | chr1_4:38045193-38045212 | Msa0161940:intron | 25.0% |
| ! | ATAATTGTATGTTGAGTGTT+TGG | - | chr1_4:38045220-38045239 | Msa0161940:intron | 25.0% |
| ! | TAATTGTATGTTGAGTGTTT+GGG | - | chr1_4:38045221-38045240 | Msa0161940:intron | 25.0% |
| ! | CAAAATCAACTTTGTATAAC+AGG | - | chr1_4:38045417-38045436 | Msa0161940:intron | 25.0% |
| !!! | TTTCAAGTTCACAAATTACA+TGG | - | chr1_4:38045600-38045619 | Msa0161940:intron | 25.0% |
| !! | TTCAAGTTCACAAATTACAT+GGG | - | chr1_4:38045601-38045620 | Msa0161940:intron | 25.0% |
| ! | GAATGACATTCAAACTATAA+TGG | + | chr1_4:38045712-38045731 | None:intergenic | 25.0% |
| ! | CATATCTAAAAATAAAGGAG+GGG | + | chr1_4:38045790-38045809 | None:intergenic | 25.0% |
| ! | CCATATCTAAAAATAAAGGA+GGG | + | chr1_4:38045791-38045810 | None:intergenic | 25.0% |
| ! | TCCATATCTAAAAATAAAGG+AGG | + | chr1_4:38045792-38045811 | None:intergenic | 25.0% |
| ! | CACTCCATATCTAAAAATAA+AGG | + | chr1_4:38045795-38045814 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTAGATATGGAG+TGG | - | chr1_4:38045793-38045812 | Msa0161940:intron | 25.0% |
| !!! | AGAGTTGTTCTAAAAATTAG+TGG | - | chr1_4:38045884-38045903 | Msa0161940:CDS | 25.0% |
| !! | CTGCAACTATATTTCATTTT+AGG | + | chr1_4:38045968-38045987 | None:intergenic | 25.0% |
| ! | GTCTGGTTATATTATATATG+TGG | - | chr1_4:38045987-38046006 | Msa0161940:intron | 25.0% |
| !! | AACTTCATTTGAAACTAACA+TGG | + | chr1_4:38046105-38046124 | None:intergenic | 25.0% |
| ! | ATTTGTAATCAGGATATTCA+TGG | + | chr1_4:38046443-38046462 | None:intergenic | 25.0% |
| ! | ATGAATATCCTGATTACAAA+TGG | - | chr1_4:38046442-38046461 | Msa0161940:intron | 25.0% |
| !!! | TTTTAAAATGAGATGAGTCT+TGG | + | chr1_4:38046641-38046660 | None:intergenic | 25.0% |
| !!! | GAAATTTGAACTTTTAGGTA+GGG | - | chr1_4:38046671-38046690 | Msa0161940:intron | 25.0% |
| ! | CAAGCATCAAAAATTCATTT+AGG | + | chr1_4:38046983-38047002 | None:intergenic | 25.0% |
| !! | TTTTGATGCTTGAACTTTAT+TGG | - | chr1_4:38046991-38047010 | Msa0161940:intron | 25.0% |
| ! | AAAGGAAGAGTTGTTATATT+TGG | - | chr1_4:38047353-38047372 | Msa0161940:intron | 25.0% |
| ! | GTATTGAACAATATCTAAAG+CGG | + | chr1_4:38047801-38047820 | None:intergenic | 25.0% |
| ! | ATCTGTGAATAATTTACAGA+GGG | + | chr1_4:38048378-38048397 | None:intergenic | 25.0% |
| !! | TGCTTTATTTATTACCACGT+AGG | + | chr1_4:38043700-38043719 | None:intergenic | 30.0% |
| ATAGAAAAGATCGAGAAGAA+TGG | - | chr1_4:38044230-38044249 | Msa0161940:intron | 30.0% | |
| TTTATCATCATCAGCAAACT+TGG | + | chr1_4:38044536-38044555 | None:intergenic | 30.0% | |
| ! | CTTCGATACGTTTAGATTTT+AGG | - | chr1_4:38044689-38044708 | Msa0161940:intron | 30.0% |
| !!! | ATACGTTTAGATTTTAGGGT+AGG | - | chr1_4:38044694-38044713 | Msa0161940:intron | 30.0% |
| !!! | AGATTTTAGGGTAGGATTTT+TGG | - | chr1_4:38044702-38044721 | Msa0161940:intron | 30.0% |
| AAACTAAATACGTAAGTCCT+GGG | + | chr1_4:38044959-38044978 | None:intergenic | 30.0% | |
| TAAACTAAATACGTAAGTCC+TGG | + | chr1_4:38044960-38044979 | None:intergenic | 30.0% | |
| TTTACTTGACATGTTTAAGG+TGG | - | chr1_4:38045131-38045150 | Msa0161940:intron | 30.0% | |
| ACTTCTACTTAAACAAAGCT+TGG | - | chr1_4:38045391-38045410 | Msa0161940:intron | 30.0% | |
| ! | CACTAGGATTTGAAACTATA+TGG | - | chr1_4:38045522-38045541 | Msa0161940:intron | 30.0% |
| AACTACTTAGCATTGCAAAT+TGG | + | chr1_4:38045644-38045663 | None:intergenic | 30.0% | |
| !! | CAATGCTAAGTAGTTTTACT+TGG | - | chr1_4:38045649-38045668 | Msa0161940:intron | 30.0% |
| TTGATTGTGTTGTCATTGTT+TGG | - | chr1_4:38045685-38045704 | Msa0161940:intron | 30.0% | |
| !!! | CCCTCCTTTATTTTTAGATA+TGG | - | chr1_4:38045788-38045807 | Msa0161940:intron | 30.0% |
| AATGAAATATAGTTGCAGTC+TGG | - | chr1_4:38045970-38045989 | Msa0161940:intron | 30.0% | |
| GCTTGCTTAAATTTATTGTC+AGG | - | chr1_4:38046076-38046095 | Msa0161940:intron | 30.0% | |
| TGCTTAAATTTATTGTCAGG+TGG | - | chr1_4:38046079-38046098 | Msa0161940:intron | 30.0% | |
| TTCTTTCTTTGTGATACTTC+AGG | - | chr1_4:38046221-38046240 | Msa0161940:CDS | 30.0% | |
| !! | GGAAATTTGAACTTTTAGGT+AGG | - | chr1_4:38046670-38046689 | Msa0161940:intron | 30.0% |
| TTCAATATGCTGCAAAACAA+AGG | + | chr1_4:38046840-38046859 | None:intergenic | 30.0% | |
| ! | ATATGAGATCAGTGTTTTCA+TGG | - | chr1_4:38047044-38047063 | Msa0161940:intron | 30.0% |
| TCTTAAATTTGTCAGCATGA+TGG | - | chr1_4:38047196-38047215 | Msa0161940:intron | 30.0% | |
| ! | TAAAGTTGATTGAAGCAGTA+AGG | + | chr1_4:38047237-38047256 | None:intergenic | 30.0% |
| ! | TCAATCAACTTTAGAGAAGA+TGG | - | chr1_4:38047244-38047263 | Msa0161940:intron | 30.0% |
| ! | CAATCAACTTTAGAGAAGAT+GGG | - | chr1_4:38047245-38047264 | Msa0161940:intron | 30.0% |
| ! | ATCAACCACATGGATATTTT+TGG | - | chr1_4:38047519-38047538 | Msa0161940:intron | 30.0% |
| !! | TATTGCATCTGGTCTTTTTA+TGG | - | chr1_4:38047758-38047777 | Msa0161940:CDS | 30.0% |
| !! | ATTGCATCTGGTCTTTTTAT+GGG | - | chr1_4:38047759-38047778 | Msa0161940:CDS | 30.0% |
| TTATGAATAGTCTGCTTCAT+TGG | + | chr1_4:38048033-38048052 | None:intergenic | 30.0% | |
| ! | AACATTTCAAAAGCTTTGTG+TGG | - | chr1_4:38048122-38048141 | Msa0161940:CDS | 30.0% |
| GGAAATTAGAACCATTAAGT+TGG | - | chr1_4:38048226-38048245 | Msa0161940:CDS | 30.0% | |
| ACAACATAAGCATACGAAAA+CGG | + | chr1_4:38048296-38048315 | None:intergenic | 30.0% | |
| CATCTGTGAATAATTTACAG+AGG | + | chr1_4:38048379-38048398 | None:intergenic | 30.0% | |
| CGTATGGATTCAACAACAAA+CGG | - | chr1_4:38044152-38044171 | Msa0161940:intron | 35.0% | |
| AAATTTACTCAGCTGAATCG+AGG | - | chr1_4:38044295-38044314 | Msa0161940:intron | 35.0% | |
| AATTTACTCAGCTGAATCGA+GGG | - | chr1_4:38044296-38044315 | Msa0161940:intron | 35.0% | |
| GAATCTAAGAGGAAGAGATT+GGG | - | chr1_4:38044318-38044337 | Msa0161940:intron | 35.0% | |
| ! | AGAAAAGGTATAAGCTAGAG+AGG | - | chr1_4:38044425-38044444 | Msa0161940:CDS | 35.0% |
| ! | GAGAGGCATAGAATGAATAA+TGG | - | chr1_4:38044442-38044461 | Msa0161940:CDS | 35.0% |
| AAGCAGATGGAACATATTGT+TGG | - | chr1_4:38044496-38044515 | Msa0161940:CDS | 35.0% | |
| AGCAGATGGAACATATTGTT+GGG | - | chr1_4:38044497-38044516 | Msa0161940:CDS | 35.0% | |
| TTAAACCTCTTAGATTGCCT+AGG | + | chr1_4:38044583-38044602 | None:intergenic | 35.0% | |
| TGTGCTAAAAAATAAGGGAC+CGG | - | chr1_4:38044852-38044871 | Msa0161940:CDS | 35.0% | |
| AAATGAACACACGACAAACA+CGG | + | chr1_4:38044893-38044912 | None:intergenic | 35.0% | |
| GTGTGTATATTTCTTCTCTG+TGG | + | chr1_4:38045028-38045047 | None:intergenic | 35.0% | |
| TGTAGAATCTTAGCATTGCA+TGG | - | chr1_4:38045161-38045180 | Msa0161940:intron | 35.0% | |
| TGAAGTGAGTGATTGATGTT+TGG | - | chr1_4:38045294-38045313 | Msa0161940:intron | 35.0% | |
| GAAGTGAGTGATTGATGTTT+GGG | - | chr1_4:38045295-38045314 | Msa0161940:intron | 35.0% | |
| ! | GTTTACTTTGAAAGCAAGCT+TGG | - | chr1_4:38045321-38045340 | Msa0161940:intron | 35.0% |
| !! | AGCAAGCTTGGTGTAAAATT+TGG | - | chr1_4:38045333-38045352 | Msa0161940:intron | 35.0% |
| TGTTTAAGTAGAAGTGAGAG+TGG | + | chr1_4:38045386-38045405 | None:intergenic | 35.0% | |
| ! | CTAGTGTGTGTTCAGTTTTA+CGG | + | chr1_4:38045508-38045527 | None:intergenic | 35.0% |
| !! | GCTAAGTAGTTTTACTTGGA+TGG | - | chr1_4:38045653-38045672 | Msa0161940:intron | 35.0% |
| TCTAAAAATAAAGGAGGGGA+AGG | + | chr1_4:38045786-38045805 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTGACAATGCTT+TGG | + | chr1_4:38045858-38045877 | None:intergenic | 35.0% |
| ! | AAGCATTGTCAAACCTTAGA+TGG | - | chr1_4:38045858-38045877 | Msa0161940:CDS | 35.0% |
| AATATTGACCCTAAGGTTTG+TGG | - | chr1_4:38045935-38045954 | Msa0161940:intron | 35.0% | |
| ATATTGACCCTAAGGTTTGT+GGG | - | chr1_4:38045936-38045955 | Msa0161940:intron | 35.0% | |
| ! | AGTTCTCATGATTTTCCTCT+AGG | - | chr1_4:38046156-38046175 | Msa0161940:intron | 35.0% |
| ! | GTTCTCATGATTTTCCTCTA+GGG | - | chr1_4:38046157-38046176 | Msa0161940:intron | 35.0% |
| AAGCTTCAGCTAAACTGAAT+AGG | + | chr1_4:38046199-38046218 | None:intergenic | 35.0% | |
| TGGATCATCCATTTGTAATC+AGG | + | chr1_4:38046453-38046472 | None:intergenic | 35.0% | |
| GATTACAAATGGATGATCCA+AGG | - | chr1_4:38046453-38046472 | Msa0161940:intron | 35.0% | |
| ! | TAGCAGTTCTATGTTTTCCT+TGG | + | chr1_4:38046473-38046492 | None:intergenic | 35.0% |
| ATAGAACTGCTAGTTGAAGT+TGG | - | chr1_4:38046481-38046500 | Msa0161940:intron | 35.0% | |
| TAGAACTGCTAGTTGAAGTT+GGG | - | chr1_4:38046482-38046501 | Msa0161940:intron | 35.0% | |
| !! | GAGTGAACTTTGACTTGTAT+GGG | - | chr1_4:38046556-38046575 | Msa0161940:intron | 35.0% |
| !! | AACTTTGACTTGTATGGGAT+TGG | - | chr1_4:38046561-38046580 | Msa0161940:intron | 35.0% |
| CATGTGCAATACATGAAGAT+GGG | + | chr1_4:38047020-38047039 | None:intergenic | 35.0% | |
| CATCTTCATGTATTGCACAT+GGG | - | chr1_4:38047019-38047038 | Msa0161940:intron | 35.0% | |
| GCTGACAAATTTAAGAACTC+AGG | + | chr1_4:38047192-38047211 | None:intergenic | 35.0% | |
| ACAAACTTCAGTTTCAATGC+AGG | - | chr1_4:38047283-38047302 | Msa0161940:intron | 35.0% | |
| GGAAGAGTTGTTATATTTGG+TGG | - | chr1_4:38047356-38047375 | Msa0161940:intron | 35.0% | |
| ! | GTTGTTATATTTGGTGGCAT+TGG | - | chr1_4:38047362-38047381 | Msa0161940:intron | 35.0% |
| !!! | ATATTTGGTGGCATTGGTTT+TGG | - | chr1_4:38047368-38047387 | Msa0161940:intron | 35.0% |
| GGAAAGAGTAATAGATGATG+CGG | + | chr1_4:38047494-38047513 | None:intergenic | 35.0% | |
| ! | AATATCCATGTGGTTGATGT+GGG | + | chr1_4:38047517-38047536 | None:intergenic | 35.0% |
| ! | AAATATCCATGTGGTTGATG+TGG | + | chr1_4:38047518-38047537 | None:intergenic | 35.0% |
| ATAGTATTGCTTACCAGGAA+TGG | + | chr1_4:38047741-38047760 | None:intergenic | 35.0% | |
| ATGCAATAGTATTGCTTACC+AGG | + | chr1_4:38047746-38047765 | None:intergenic | 35.0% | |
| GTAAGCAATACTATTGCATC+TGG | - | chr1_4:38047747-38047766 | Msa0161940:CDS | 35.0% | |
| !! | TTGCATCTGGTCTTTTTATG+GGG | - | chr1_4:38047760-38047779 | Msa0161940:CDS | 35.0% |
| ! | CTTATTTGAAATCCACTGCA+AGG | + | chr1_4:38047854-38047873 | None:intergenic | 35.0% |
| ! | GGAAGTTTTTGTAACCCAAA+AGG | - | chr1_4:38047969-38047988 | Msa0161940:CDS | 35.0% |
| ACTACAACTGCACAAAGAAA+TGG | + | chr1_4:38048080-38048099 | None:intergenic | 35.0% | |
| ! | GTTTTTAATCTATTGGCACC+CGG | - | chr1_4:38048098-38048117 | Msa0161940:CDS | 35.0% |
| ! | TTTTTAATCTATTGGCACCC+GGG | - | chr1_4:38048099-38048118 | Msa0161940:CDS | 35.0% |
| !!! | AAAGCTTTTGAAATGTTCCC+GGG | + | chr1_4:38048119-38048138 | None:intergenic | 35.0% |
| !!! | CAAAGCTTTTGAAATGTTCC+CGG | + | chr1_4:38048120-38048139 | None:intergenic | 35.0% |
| AGCATACGAAAACGGAATTT+GGG | + | chr1_4:38048288-38048307 | None:intergenic | 35.0% | |
| AAGCATACGAAAACGGAATT+TGG | + | chr1_4:38048289-38048308 | None:intergenic | 35.0% | |
| ! | GTATGCTTATGTTGTTTACG+TGG | - | chr1_4:38048301-38048320 | Msa0161940:exon | 35.0% |
| ACCCCAGGACATGTTTATTT+GGG | + | chr1_4:38043666-38043685 | None:intergenic | 40.0% | |
| TTATTACCACGTAGGAGAGA+TGG | + | chr1_4:38043692-38043711 | None:intergenic | 40.0% | |
| ! | GAAGATGTGTGATAACGTTG+TGG | + | chr1_4:38043770-38043789 | None:intergenic | 40.0% |
| GCAAGAAGCCATGAGATTAA+CGG | + | chr1_4:38043849-38043868 | None:intergenic | 40.0% | |
| !! | GAATGGATTACCGTAGTCAT+CGG | + | chr1_4:38044065-38044084 | None:intergenic | 40.0% |
| AAACCAGTTTCAAGCGGTAA+CGG | - | chr1_4:38044178-38044197 | Msa0161940:intron | 40.0% | |
| GGAATCTAAGAGGAAGAGAT+TGG | - | chr1_4:38044317-38044336 | Msa0161940:intron | 40.0% | |
| TTGGGAAGAAGTAGCTTCAA+TGG | - | chr1_4:38044336-38044355 | Msa0161940:intron | 40.0% | |
| TGAGAATCAATCGAAGAGTG+TGG | - | chr1_4:38044372-38044391 | Msa0161940:intron | 40.0% | |
| TGTGGAACAGTGTAAGAACA+AGG | - | chr1_4:38044390-38044409 | Msa0161940:intron | 40.0% | |
| GTTGCATTTCTGCTAGTCAT+TGG | - | chr1_4:38044464-38044483 | Msa0161940:CDS | 40.0% | |
| TGTTCCATCTGCTTAAACCA+AGG | + | chr1_4:38044490-38044509 | None:intergenic | 40.0% | |
| TATTGTTGGGAATTCGCTTC+CGG | - | chr1_4:38044510-38044529 | Msa0161940:CDS | 40.0% | |
| CTTAGATTGCCTAGGTGAAA+TGG | + | chr1_4:38044575-38044594 | None:intergenic | 40.0% | |
| TTTCACCTAGGCAATCTAAG+AGG | - | chr1_4:38044575-38044594 | Msa0161940:intron | 40.0% | |
| ATCTTAGCATTGCATGGCAT+AGG | - | chr1_4:38045167-38045186 | Msa0161940:intron | 40.0% | |
| !! | ATAGCGACTATCGATTCAGA+TGG | - | chr1_4:38045476-38045495 | Msa0161940:intron | 40.0% |
| CGTAAAACTGAACACACACT+AGG | - | chr1_4:38045506-38045525 | Msa0161940:intron | 40.0% | |
| !! | GTAGTTTTACTTGGATGGAG+TGG | - | chr1_4:38045658-38045677 | Msa0161940:intron | 40.0% |
| ! | TTGACAATGCTTTGGACTTC+AGG | + | chr1_4:38045850-38045869 | None:intergenic | 40.0% |
| CATTGTCAAACCTTAGATGG+CGG | - | chr1_4:38045861-38045880 | Msa0161940:CDS | 40.0% | |
| ! | ATTAGTGGATCAGCACTTAC+TGG | - | chr1_4:38045899-38045918 | Msa0161940:CDS | 40.0% |
| AGGGTCAATATTGCAGGTAT+CGG | + | chr1_4:38045927-38045946 | None:intergenic | 40.0% | |
| TACCTGCAATATTGACCCTA+AGG | - | chr1_4:38045928-38045947 | Msa0161940:intron | 40.0% | |
| AACCTTAGGGTCAATATTGC+AGG | + | chr1_4:38045933-38045952 | None:intergenic | 40.0% | |
| GTACATTCCCACAAACCTTA+GGG | + | chr1_4:38045946-38045965 | None:intergenic | 40.0% | |
| AGCAAAATACAAGACCCTAG+AGG | + | chr1_4:38046174-38046193 | None:intergenic | 40.0% | |
| CTTCAGGTAGCAATTGTTGT+TGG | - | chr1_4:38046237-38046256 | Msa0161940:CDS | 40.0% | |
| ATTTCTTCTGTGGAGATGCA+TGG | - | chr1_4:38046268-38046287 | Msa0161940:CDS | 40.0% | |
| TTTCTTCTGTGGAGATGCAT+GGG | - | chr1_4:38046269-38046288 | Msa0161940:CDS | 40.0% | |
| AGATGTACTGCATACCAAGT+TGG | - | chr1_4:38046312-38046331 | Msa0161940:CDS | 40.0% | |
| GATGTACTGCATACCAAGTT+GGG | - | chr1_4:38046313-38046332 | Msa0161940:CDS | 40.0% | |
| GTGATTAACCTTACCCAACT+TGG | + | chr1_4:38046329-38046348 | None:intergenic | 40.0% | |
| !! | GGAGTGAACTTTGACTTGTA+TGG | - | chr1_4:38046555-38046574 | Msa0161940:intron | 40.0% |
| TTTAGGTAGGGCTGTAAATG+TGG | - | chr1_4:38046683-38046702 | Msa0161940:intron | 40.0% | |
| CCATGTGCAATACATGAAGA+TGG | + | chr1_4:38047021-38047040 | None:intergenic | 40.0% | |
| CCATCTTCATGTATTGCACA+TGG | - | chr1_4:38047018-38047037 | Msa0161940:intron | 40.0% | |
| ! | GATATGTCGGTTGAGAAAAG+TGG | + | chr1_4:38047404-38047423 | None:intergenic | 40.0% |
| AGAGTAATAGATGATGCGGA+GGG | + | chr1_4:38047490-38047509 | None:intergenic | 40.0% | |
| AAGAGTAATAGATGATGCGG+AGG | + | chr1_4:38047491-38047510 | None:intergenic | 40.0% | |
| ! | ATATCCATGTGGTTGATGTG+GGG | + | chr1_4:38047516-38047535 | None:intergenic | 40.0% |
| GCTTGCCAAAAATATCCATG+TGG | + | chr1_4:38047527-38047546 | None:intergenic | 40.0% | |
| GTCATATACACCATCTACGT+TGG | + | chr1_4:38047606-38047625 | None:intergenic | 40.0% | |
| TTTCGAGCACATATCCTTCA+GGG | - | chr1_4:38047652-38047671 | Msa0161940:CDS | 40.0% | |
| ! | ATTTTCCTCGCAGAATGTCA+GGG | + | chr1_4:38047717-38047736 | None:intergenic | 40.0% |
| !! | TGCATCTGGTCTTTTTATGG+GGG | - | chr1_4:38047761-38047780 | Msa0161940:CDS | 40.0% |
| !!! | TCTTTTTATGGGGGTGTTTC+AGG | - | chr1_4:38047770-38047789 | Msa0161940:CDS | 40.0% |
| ACAACTGCACAAAGAAATGG+TGG | + | chr1_4:38048077-38048096 | None:intergenic | 40.0% | |
| ! | GTTAGCTTATTGCTCCAGTT+TGG | + | chr1_4:38048172-38048191 | None:intergenic | 40.0% |
| GTGGCAAGTATCCAACTTAA+TGG | + | chr1_4:38048240-38048259 | None:intergenic | 40.0% | |
| ! | TGCTTATGTTGTTTACGTGG+TGG | - | chr1_4:38048304-38048323 | Msa0161940:exon | 40.0% |
| ! | TGTTCGCATTTTACCGACAA+AGG | + | chr1_4:38048436-38048455 | None:intergenic | 40.0% |
| CGGTAAAATGCGAACAGATA+TGG | - | chr1_4:38048440-38048459 | Msa0161940:five_prime_UTR | 40.0% | |
| TGGCCCAAATAAACATGTCC+TGG | - | chr1_4:38043660-38043679 | Msa0161940:three_prime_UTR | 45.0% | |
| GGCCCAAATAAACATGTCCT+GGG | - | chr1_4:38043661-38043680 | Msa0161940:three_prime_UTR | 45.0% | |
| GCCCAAATAAACATGTCCTG+GGG | - | chr1_4:38043662-38043681 | Msa0161940:three_prime_UTR | 45.0% | |
| GACCCCAGGACATGTTTATT+TGG | + | chr1_4:38043667-38043686 | None:intergenic | 45.0% | |
| GCGTTAGGGAAAAGAGAAGA+AGG | + | chr1_4:38043794-38043813 | None:intergenic | 45.0% | |
| ! | AAGACGGTGTAAGGGTATGA+GGG | + | chr1_4:38043821-38043840 | None:intergenic | 45.0% |
| AGAAGCCATGAGATTAACGG+CGG | + | chr1_4:38043846-38043865 | None:intergenic | 45.0% | |
| ! | TTTGGATTGGACTGAAGCTG+TGG | + | chr1_4:38043990-38044009 | None:intergenic | 45.0% |
| ! | AGGTGGTGATGTGTTTGGAT+TGG | + | chr1_4:38044003-38044022 | None:intergenic | 45.0% |
| CGGTCAAAACCAGTTTCAAG+CGG | - | chr1_4:38044172-38044191 | Msa0161940:intron | 45.0% | |
| TCTATACTCTGCTCCTACTC+CGG | + | chr1_4:38044215-38044234 | None:intergenic | 45.0% | |
| CTGAATCGAGGGAATCTAAG+AGG | - | chr1_4:38044307-38044326 | Msa0161940:intron | 45.0% | |
| TAGCTTCAATGGTGAGTGAG+CGG | - | chr1_4:38044347-38044366 | Msa0161940:intron | 45.0% | |
| ! | TTTCTGCTAGTCATTGGCCT+TGG | - | chr1_4:38044470-38044489 | Msa0161940:CDS | 45.0% |
| !! | TTGGCCTTGGTTTAAGCAGA+TGG | - | chr1_4:38044483-38044502 | Msa0161940:CDS | 45.0% |
| TCATCATCAGCAAACTTGGC+CGG | + | chr1_4:38044532-38044551 | None:intergenic | 45.0% | |
| TTCCTGCTTCCATTTCACCT+AGG | - | chr1_4:38044563-38044582 | Msa0161940:CDS | 45.0% | |
| ! | ATGCTCCCTTACTCCTTTTC+CGG | - | chr1_4:38044926-38044945 | Msa0161940:CDS | 45.0% |
| CAATCCCGGAAAAGGAGTAA+GGG | + | chr1_4:38044934-38044953 | None:intergenic | 45.0% | |
| TCAATCCCGGAAAAGGAGTA+AGG | + | chr1_4:38044935-38044954 | None:intergenic | 45.0% | |
| ! | GTGTGTGTTCAGTTTTACGG+AGG | + | chr1_4:38045505-38045524 | None:intergenic | 45.0% |
| GGTACATTCCCACAAACCTT+AGG | + | chr1_4:38045947-38045966 | None:intergenic | 45.0% | |
| ! | CAGGTAGCAATTGTTGTTGG+AGG | - | chr1_4:38046240-38046259 | Msa0161940:CDS | 45.0% |
| GGAGGTCGTAATTTCTTCTG+TGG | - | chr1_4:38046258-38046277 | Msa0161940:CDS | 45.0% | |
| ! | ACTGCATACCAAGTTGGGTA+AGG | - | chr1_4:38046318-38046337 | Msa0161940:CDS | 45.0% |
| TGCTAGTTGAAGTTGGGATG+TGG | - | chr1_4:38046488-38046507 | Msa0161940:intron | 45.0% | |
| GCTAGTTGAAGTTGGGATGT+GGG | - | chr1_4:38046489-38046508 | Msa0161940:intron | 45.0% | |
| !! | ATGTGGGAAAGAGAGCATCT+TGG | - | chr1_4:38046505-38046524 | Msa0161940:intron | 45.0% |
| !! | AAAGAGAGCATCTTGGTGAC+AGG | - | chr1_4:38046512-38046531 | Msa0161940:intron | 45.0% |
| GGAGGCAGTTGCTATCTAAT+TGG | + | chr1_4:38046592-38046611 | None:intergenic | 45.0% | |
| GAACCACCAGGAGGTTAAAT+TGG | - | chr1_4:38046716-38046735 | Msa0161940:intron | 45.0% | |
| ACAGTGCCAATTTAACCTCC+TGG | + | chr1_4:38046725-38046744 | None:intergenic | 45.0% | |
| ATCAGCAAAGCACATCCAGT+TGG | + | chr1_4:38046771-38046790 | None:intergenic | 45.0% | |
| AACTGGATGTGCTTTGCTGA+TGG | - | chr1_4:38046770-38046789 | Msa0161940:intron | 45.0% | |
| ! | TCAGAAGTGCAACTCTAGGA+AGG | + | chr1_4:38046817-38046836 | None:intergenic | 45.0% |
| ! | AAGGTCAGAAGTGCAACTCT+AGG | + | chr1_4:38046821-38046840 | None:intergenic | 45.0% |
| ! | CGTTTGCTGAACCGTACAAT+AGG | - | chr1_4:38047306-38047325 | Msa0161940:intron | 45.0% |
| CTGAACCGTACAATAGGCAA+CGG | - | chr1_4:38047312-38047331 | Msa0161940:intron | 45.0% | |
| TGAACCGTACAATAGGCAAC+GGG | - | chr1_4:38047313-38047332 | Msa0161940:intron | 45.0% | |
| TCCTTTCTCAAGATGCCTGA+TGG | + | chr1_4:38047339-38047358 | None:intergenic | 45.0% | |
| ! | TATCCATGTGGTTGATGTGG+GGG | + | chr1_4:38047515-38047534 | None:intergenic | 45.0% |
| CATCTACGTTGGTACCTTTG+AGG | + | chr1_4:38047595-38047614 | None:intergenic | 45.0% | |
| !! | CTCAAAGGTACCAACGTAGA+TGG | - | chr1_4:38047593-38047612 | Msa0161940:CDS | 45.0% |
| CTTTCGAGCACATATCCTTC+AGG | - | chr1_4:38047651-38047670 | Msa0161940:CDS | 45.0% | |
| ! | CATTTTCCTCGCAGAATGTC+AGG | + | chr1_4:38047718-38047737 | None:intergenic | 45.0% |
| ATTCTCCATGTTCCTTGCAG+TGG | - | chr1_4:38047839-38047858 | Msa0161940:CDS | 45.0% | |
| GAAATCCACTGCAAGGAACA+TGG | + | chr1_4:38047847-38047866 | None:intergenic | 45.0% | |
| GCTTTGTGTGGAGAACAAGT+TGG | - | chr1_4:38048134-38048153 | Msa0161940:CDS | 45.0% | |
| GGCACACTTATTGACCAAAC+TGG | - | chr1_4:38048155-38048174 | Msa0161940:CDS | 45.0% | |
| TCAGCTCTACAATTTCCCAG+TGG | + | chr1_4:38048262-38048281 | None:intergenic | 45.0% | |
| TAGCAGTAGCCTTCCTTTGT+CGG | - | chr1_4:38048420-38048439 | Msa0161940:five_prime_UTR | 45.0% | |
| ! | CGCATTTTACCGACAAAGGA+AGG | + | chr1_4:38048432-38048451 | None:intergenic | 45.0% |
| TTACCACGTAGGAGAGATGG+AGG | + | chr1_4:38043689-38043708 | None:intergenic | 50.0% | |
| ! | GGTGTAAGGGTATGAGGGAA+CGG | + | chr1_4:38043816-38043835 | None:intergenic | 50.0% |
| ! | GAAGACGGTGTAAGGGTATG+AGG | + | chr1_4:38043822-38043841 | None:intergenic | 50.0% |
| GAGATTAACGGCGGAGAAGA+CGG | + | chr1_4:38043837-38043856 | None:intergenic | 50.0% | |
| CTTCTCCGCCGTTAATCTCA+TGG | - | chr1_4:38043838-38043857 | Msa0161940:three_prime_UTR | 50.0% | |
| AGTGGTGGTTGTTATCGTCG+TGG | + | chr1_4:38043898-38043917 | None:intergenic | 50.0% | |
| ! | AGAAGTGGTGGTGAGAGTGT+TGG | + | chr1_4:38043967-38043986 | None:intergenic | 50.0% |
| AATCCATTCGACGATGACGC+TGG | - | chr1_4:38044076-38044095 | Msa0161940:intron | 50.0% | |
| TGCCTAGGTGAAATGGAAGC+AGG | + | chr1_4:38044568-38044587 | None:intergenic | 50.0% | |
| ACGGAACATCTGACGTTGTC+CGG | + | chr1_4:38044874-38044893 | None:intergenic | 50.0% | |
| ! | TGCTCCCTTACTCCTTTTCC+GGG | - | chr1_4:38044927-38044946 | Msa0161940:CDS | 50.0% |
| GTAAGTCCTGGGTTCAATCC+CGG | + | chr1_4:38044948-38044967 | None:intergenic | 50.0% | |
| ATGTTGAGTGTTTGGGCGAG+TGG | - | chr1_4:38045228-38045247 | Msa0161940:intron | 50.0% | |
| GTTTACTTGACCTCCACTGC+TGG | + | chr1_4:38045825-38045844 | None:intergenic | 50.0% | |
| GAACAACTCTCCGCCATCTA+AGG | + | chr1_4:38045874-38045893 | None:intergenic | 50.0% | |
| GTTGCAATAGCTTCCCGTCT+TGG | - | chr1_4:38046122-38046141 | Msa0161940:intron | 50.0% | |
| AATAGCTTCCCGTCTTGGTG+TGG | - | chr1_4:38046127-38046146 | Msa0161940:intron | 50.0% | |
| ACTGTACCTCCACACCAAGA+CGG | + | chr1_4:38046139-38046158 | None:intergenic | 50.0% | |
| GATGCATGGGTAACTGCAAC+TGG | - | chr1_4:38046282-38046301 | Msa0161940:CDS | 50.0% | |
| TAGATAGCAACTGCCTCCTC+TGG | - | chr1_4:38046594-38046613 | Msa0161940:intron | 50.0% | |
| TTTGCACTCCAACGATCCAG+AGG | + | chr1_4:38046613-38046632 | None:intergenic | 50.0% | |
| TGGATCGTTGGAGTGCAAAG+AGG | - | chr1_4:38046614-38046633 | Msa0161940:intron | 50.0% | |
| AGGGCTGTAAATGTGGAGTG+AGG | - | chr1_4:38046690-38046709 | Msa0161940:intron | 50.0% | |
| GTGCCAATTTAACCTCCTGG+TGG | + | chr1_4:38046722-38046741 | None:intergenic | 50.0% | |
| ATGGCCCGTTGCCTATTGTA+CGG | + | chr1_4:38047320-38047339 | None:intergenic | 50.0% | |
| GCCATCAGGCATCTTGAGAA+AGG | - | chr1_4:38047335-38047354 | Msa0161940:intron | 50.0% | |
| CCGAAGAGCAGCAGATATGT+CGG | + | chr1_4:38047417-38047436 | None:intergenic | 50.0% | |
| CCGACATATCTGCTGCTCTT+CGG | - | chr1_4:38047414-38047433 | Msa0161940:intron | 50.0% | |
| CGACATATCTGCTGCTCTTC+GGG | - | chr1_4:38047415-38047434 | Msa0161940:intron | 50.0% | |
| TTTCCCCCACATCAACCACA+TGG | - | chr1_4:38047509-38047528 | Msa0161940:intron | 50.0% | |
| CTGCTCTGCAGTTAATGCTC+AGG | - | chr1_4:38047565-38047584 | Msa0161940:intron | 50.0% | |
| AATGCTCAGGCTGTCCTCAA+AGG | - | chr1_4:38047578-38047597 | Msa0161940:CDS | 50.0% | |
| TCTAGACACTAGCTCCCTGA+AGG | + | chr1_4:38047669-38047688 | None:intergenic | 50.0% | |
| TTCAGGGAGCTAGTGTCTAG+AGG | - | chr1_4:38047668-38047687 | Msa0161940:CDS | 50.0% | |
| !! | GTCTAGAGGTGTCACCTCTA+TGG | - | chr1_4:38047682-38047701 | Msa0161940:CDS | 50.0% |
| CAGGGCTGACATATCCATAG+AGG | + | chr1_4:38047699-38047718 | None:intergenic | 50.0% | |
| TGCGAGGAAAATGCCATTCC+TGG | - | chr1_4:38047725-38047744 | Msa0161940:CDS | 50.0% | |
| AGTTGGATACTTGCCACCAC+TGG | - | chr1_4:38048243-38048262 | Msa0161940:CDS | 50.0% | |
| GTTGGATACTTGCCACCACT+GGG | - | chr1_4:38048244-38048263 | Msa0161940:CDS | 50.0% | |
| GCTCTACAATTTCCCAGTGG+TGG | + | chr1_4:38048259-38048278 | None:intergenic | 50.0% | |
| GGTATGAGGGAACGGCGTTA+GGG | + | chr1_4:38043808-38043827 | None:intergenic | 55.0% | |
| GGTGGTTGTTATCGTCGTGG+AGG | + | chr1_4:38043895-38043914 | None:intergenic | 55.0% | |
| !! | TGTTGGTTGTGGTGGTGGTG+AGG | + | chr1_4:38043950-38043969 | None:intergenic | 55.0% |
| !! | GAGAGTGTTGGTTGTGGTGG+TGG | + | chr1_4:38043955-38043974 | None:intergenic | 55.0% |
| !! | GGTGAGAGTGTTGGTTGTGG+TGG | + | chr1_4:38043958-38043977 | None:intergenic | 55.0% |
| !! | GGTGGTGAGAGTGTTGGTTG+TGG | + | chr1_4:38043961-38043980 | None:intergenic | 55.0% |
| CTGAAGCTGTGGAGAAGTGG+TGG | + | chr1_4:38043979-38043998 | None:intergenic | 55.0% | |
| GGACTGAAGCTGTGGAGAAG+TGG | + | chr1_4:38043982-38044001 | None:intergenic | 55.0% | |
| ! | GACGGAGGTGGTGATGTGTT+TGG | + | chr1_4:38044008-38044027 | None:intergenic | 55.0% |
| GGAGACGACACCGATGACTA+CGG | - | chr1_4:38044052-38044071 | Msa0161940:CDS | 55.0% | |
| CTACCAGCGTCATCGTCGAA+TGG | + | chr1_4:38044082-38044101 | None:intergenic | 55.0% | |
| TGCGATGCAACGACGTCGTA+TGG | - | chr1_4:38044136-38044155 | Msa0161940:intron | 55.0% | |
| CCACCGTTACCGCTTGAAAC+TGG | + | chr1_4:38044184-38044203 | None:intergenic | 55.0% | |
| ! | CCAGTTTCAAGCGGTAACGG+TGG | - | chr1_4:38044181-38044200 | Msa0161940:intron | 55.0% |
| ! | GTTTCAAGCGGTAACGGTGG+AGG | - | chr1_4:38044184-38044203 | Msa0161940:intron | 55.0% |
| CCTGGGTTCAATCCCGGAAA+AGG | + | chr1_4:38044942-38044961 | None:intergenic | 55.0% | |
| ! | CCTTTTCCGGGATTGAACCC+AGG | - | chr1_4:38044939-38044958 | Msa0161940:intron | 55.0% |
| CTGTACCTCCACACCAAGAC+GGG | + | chr1_4:38046138-38046157 | None:intergenic | 55.0% | |
| ! | AGCATCTTGGTGACAGGCCA+GGG | - | chr1_4:38046518-38046537 | Msa0161940:intron | 55.0% |
| CAAAGTTCACTCCCCAGCTG+TGG | + | chr1_4:38046548-38046567 | None:intergenic | 55.0% | |
| AACTGCCTCCTCTGGATCGT+TGG | - | chr1_4:38046602-38046621 | Msa0161940:intron | 55.0% | |
| ACAATAGGCAACGGGCCATC+AGG | - | chr1_4:38047321-38047340 | Msa0161940:intron | 55.0% | |
| !!! | GGTGGCATTGGTTTTGGTGC+TGG | - | chr1_4:38047374-38047393 | Msa0161940:intron | 55.0% |
| TAGGAGAGATGGAGGACCCC+AGG | + | chr1_4:38043681-38043700 | None:intergenic | 60.0% | |
| GGTCCTCCATCTCTCCTACG+TGG | - | chr1_4:38043683-38043702 | Msa0161940:three_prime_UTR | 60.0% | |
| GGGTATGAGGGAACGGCGTT+AGG | + | chr1_4:38043809-38043828 | None:intergenic | 60.0% | |
| CGGCGGAGAAGACGGTGTAA+GGG | + | chr1_4:38043829-38043848 | None:intergenic | 60.0% | |
| ACGGCGGAGAAGACGGTGTA+AGG | + | chr1_4:38043830-38043849 | None:intergenic | 60.0% | |
| !! | CGAAGGTTTGGTGGAGGTGG+TGG | + | chr1_4:38043925-38043944 | None:intergenic | 60.0% |
| !! | GTGCGAAGGTTTGGTGGAGG+TGG | + | chr1_4:38043928-38043947 | None:intergenic | 60.0% |
| !! | GAGGTGCGAAGGTTTGGTGG+AGG | + | chr1_4:38043931-38043950 | None:intergenic | 60.0% |
| GGTGAGGTGCGAAGGTTTGG+TGG | + | chr1_4:38043934-38043953 | None:intergenic | 60.0% | |
| GGTGGTGAGGTGCGAAGGTT+TGG | + | chr1_4:38043937-38043956 | None:intergenic | 60.0% | |
| ! | AGCTTCCCGTCTTGGTGTGG+AGG | - | chr1_4:38046130-38046149 | Msa0161940:intron | 60.0% |
| ! | GAGCATCTTGGTGACAGGCC+AGG | - | chr1_4:38046517-38046536 | Msa0161940:intron | 60.0% |
| ! | TCTTGGTGACAGGCCAGGGA+AGG | - | chr1_4:38046522-38046541 | Msa0161940:intron | 60.0% |
| GCACTCCAACGATCCAGAGG+AGG | + | chr1_4:38046610-38046629 | None:intergenic | 60.0% | |
| GGAGTGAGGTCAGAACCACC+AGG | - | chr1_4:38046704-38046723 | Msa0161940:intron | 60.0% | |
| GTGAGGTCAGAACCACCAGG+AGG | - | chr1_4:38046707-38046726 | Msa0161940:intron | 60.0% | |
| TGCTGCTCTTCGGGCTTCAG+AGG | - | chr1_4:38047424-38047443 | Msa0161940:intron | 60.0% | |
| GCTGCTCTTCGGGCTTCAGA+GGG | - | chr1_4:38047425-38047444 | Msa0161940:intron | 60.0% | |
| GTCAGCCCTGACATTCTGCG+AGG | - | chr1_4:38047709-38047728 | Msa0161940:CDS | 60.0% | |
| ! | GGAGGTGGTGGTGAGAGTGG+TGG | + | chr1_4:38043913-38043932 | None:intergenic | 65.0% |
| ! | GGTGGAGGTGGTGGTGAGAG+TGG | + | chr1_4:38043916-38043935 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGAGGTGCGA+AGG | + | chr1_4:38043942-38043961 | None:intergenic | 65.0% |
| ! | GGTGTCGTCTCCGTCGTCGT+CGG | + | chr1_4:38044044-38044063 | None:intergenic | 65.0% |
| ! | GGTAACGGTGGAGGAAGCGC+CGG | - | chr1_4:38044193-38044212 | Msa0161940:intron | 65.0% |
| GGAGTGGCTACGTCCAGCAG+TGG | - | chr1_4:38045809-38045828 | Msa0161940:intron | 65.0% | |
| GTGGCTACGTCCAGCAGTGG+AGG | - | chr1_4:38045812-38045831 | Msa0161940:intron | 65.0% | |
| GTCTCCGTCGTCGTCGGCGA+CGG | + | chr1_4:38044038-38044057 | None:intergenic | 70.0% | |
| !! | GGTGGAGGAAGCGCCGGAGT+AGG | - | chr1_4:38044199-38044218 | Msa0161940:intron | 70.0% |
| AGGCCAGGGAAGGCCACAGC+TGG | - | chr1_4:38046532-38046551 | Msa0161940:intron | 70.0% | |
| GGCCAGGGAAGGCCACAGCT+GGG | - | chr1_4:38046533-38046552 | Msa0161940:intron | 70.0% | |
| GCCAGGGAAGGCCACAGCTG+GGG | - | chr1_4:38046534-38046553 | Msa0161940:intron | 70.0% | |
| TCCCCAGCTGTGGCCTTCCC+TGG | + | chr1_4:38046538-38046557 | None:intergenic | 70.0% | |
| TCCGTCGTCGTCGGCGACGG+CGG | + | chr1_4:38044035-38044054 | None:intergenic | 75.0% | |
| ! | GACGGCGGCGGAGACGGAGG+TGG | + | chr1_4:38044020-38044039 | None:intergenic | 80.0% |
| ! | GTCGGCGACGGCGGCGGAGA+CGG | + | chr1_4:38044026-38044045 | None:intergenic | 80.0% |
| ! | GTCGTCGTCGGCGACGGCGG+CGG | + | chr1_4:38044032-38044051 | None:intergenic | 80.0% |
| ! | GCCGCCGTCGCCGACGACGA+CGG | - | chr1_4:38044031-38044050 | Msa0161940:CDS | 80.0% |
| ! | GGCGACGGCGGCGGAGACGG+AGG | + | chr1_4:38044023-38044042 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38043658 | 38048507 | 38043658 | ID=Msa0161940;Name=Msa0161940 |
| chr1_4 | mRNA | 38043658 | 38048507 | 38043658 | ID=Msa0161940-mRNA-1;Parent=Msa0161940;Name=Msa0161940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=199|1|1|1|1|1|7|317|511 |
| chr1_4 | exon | 38043658 | 38044072 | 38043658 | ID=Msa0161940-mRNA-1:exon:11159;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38044419 | 38044589 | 38044419 | ID=Msa0161940-mRNA-1:exon:11158;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38044719 | 38044954 | 38044719 | ID=Msa0161940-mRNA-1:exon:11157;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38045831 | 38045922 | 38045831 | ID=Msa0161940-mRNA-1:exon:11156;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38046014 | 38046067 | 38046014 | ID=Msa0161940-mRNA-1:exon:11155;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38046216 | 38046360 | 38046216 | ID=Msa0161940-mRNA-1:exon:11154;Parent=Msa0161940-mRNA-1 |
| chr1_4 | exon | 38047569 | 38048507 | 38047569 | ID=Msa0161940-mRNA-1:exon:11153;Parent=Msa0161940-mRNA-1 |
| chr1_4 | five_prime_UTR | 38048309 | 38048507 | 38048309 | ID=Msa0161940-mRNA-1:five_prime_utr;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38047569 | 38048308 | 38047569 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38046216 | 38046360 | 38046216 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38046014 | 38046067 | 38046014 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38045831 | 38045922 | 38045831 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38044719 | 38044954 | 38044719 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38044419 | 38044589 | 38044419 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | CDS | 38043975 | 38044072 | 38043975 | ID=Msa0161940-mRNA-1:cds;Parent=Msa0161940-mRNA-1 |
| chr1_4 | three_prime_UTR | 38043658 | 38043974 | 38043658 | ID=Msa0161940-mRNA-1:three_prime_utr;Parent=Msa0161940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
