Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162570 | XP_039688434.1 | 64.846 | 421 | 79 | 8 | 1 | 359 | 1 | 414 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162570 | sp|Q8L3W1|VRN1_ARATH | 33.607 | 122 | 75 | 2 | 7 | 122 | 4 | 125 | 1.88e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162570 | A0A396JPN4 | 64.846 | 421 | 79 | 8 | 1 | 359 | 1 | 414 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0162570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162570 | MtrunA17_Chr1g0163181 | 64.846 | 421 | 79 | 8 | 1 | 359 | 1 | 414 | 0.0 | 518 |
| Msa0162570 | MtrunA17_Chr1g0163201 | 64.615 | 390 | 58 | 4 | 20 | 359 | 18 | 377 | 1.95e-166 | 470 |
| Msa0162570 | MtrunA17_Chr1g0163251 | 45.663 | 392 | 120 | 11 | 1 | 317 | 1 | 374 | 1.34e-88 | 272 |
| Msa0162570 | MtrunA17_Chr1g0163111 | 62.385 | 218 | 54 | 5 | 147 | 360 | 21 | 214 | 4.89e-83 | 252 |
| Msa0162570 | MtrunA17_Chr1g0163151 | 61.353 | 207 | 50 | 2 | 153 | 359 | 30 | 206 | 5.13e-80 | 244 |
| Msa0162570 | MtrunA17_Chr1g0163191 | 77.848 | 158 | 34 | 1 | 1 | 158 | 1 | 157 | 4.36e-74 | 226 |
| Msa0162570 | MtrunA17_Chr1g0171611 | 44.178 | 292 | 125 | 10 | 1 | 261 | 1 | 285 | 7.34e-66 | 210 |
| Msa0162570 | MtrunA17_Chr1g0163261 | 40.541 | 296 | 126 | 6 | 1 | 249 | 1 | 293 | 3.99e-65 | 208 |
| Msa0162570 | MtrunA17_Chr1g0163231 | 41.489 | 282 | 123 | 7 | 1 | 240 | 1 | 282 | 8.56e-63 | 202 |
| Msa0162570 | MtrunA17_Chr1g0163241 | 65.823 | 158 | 37 | 3 | 1 | 157 | 7 | 148 | 3.69e-62 | 196 |
| Msa0162570 | MtrunA17_Chr6g0476171 | 35.071 | 211 | 102 | 7 | 154 | 359 | 50 | 230 | 5.55e-29 | 112 |
| Msa0162570 | MtrunA17_Chr1g0163101 | 44.186 | 129 | 69 | 2 | 14 | 140 | 26 | 153 | 1.13e-28 | 109 |
| Msa0162570 | MtrunA17_Chr1g0163131 | 29.577 | 284 | 135 | 8 | 14 | 236 | 27 | 306 | 1.45e-28 | 113 |
| Msa0162570 | MtrunA17_Chr1g0163131 | 33.571 | 140 | 78 | 5 | 233 | 359 | 154 | 291 | 6.04e-12 | 65.9 |
| Msa0162570 | MtrunA17_Chr1g0208771 | 24.773 | 440 | 222 | 14 | 20 | 359 | 12 | 442 | 2.73e-26 | 108 |
| Msa0162570 | MtrunA17_Chr1g0163091 | 42.149 | 121 | 67 | 2 | 132 | 252 | 15 | 132 | 2.52e-25 | 100 |
| Msa0162570 | MtrunA17_Chr7g0233561 | 28.814 | 295 | 144 | 8 | 9 | 237 | 18 | 312 | 4.86e-25 | 103 |
| Msa0162570 | MtrunA17_Chr1g0162161 | 39.583 | 144 | 64 | 5 | 21 | 157 | 4 | 131 | 2.12e-24 | 97.8 |
| Msa0162570 | MtrunA17_Chr1g0163121 | 46.364 | 110 | 56 | 2 | 19 | 126 | 9 | 117 | 2.14e-24 | 97.4 |
| Msa0162570 | MtrunA17_Chr1g0162151 | 33.491 | 212 | 92 | 4 | 146 | 357 | 28 | 190 | 2.16e-24 | 99.4 |
| Msa0162570 | MtrunA17_Chr7g0233521 | 29.434 | 265 | 136 | 5 | 21 | 237 | 2 | 263 | 6.00e-24 | 99.8 |
| Msa0162570 | MtrunA17_Chr3g0103181 | 27.675 | 271 | 148 | 9 | 9 | 235 | 12 | 278 | 8.24e-23 | 96.7 |
| Msa0162570 | MtrunA17_Chr6g0476181 | 45.133 | 113 | 57 | 3 | 21 | 133 | 2 | 109 | 4.64e-22 | 91.7 |
| Msa0162570 | MtrunA17_Chr3g0131891 | 28.159 | 277 | 145 | 7 | 14 | 237 | 28 | 303 | 4.95e-22 | 95.5 |
| Msa0162570 | MtrunA17_Chr3g0103171 | 26.199 | 271 | 134 | 7 | 20 | 235 | 5 | 264 | 1.81e-21 | 92.4 |
| Msa0162570 | MtrunA17_Chr1g0163081 | 38.525 | 122 | 70 | 3 | 21 | 140 | 6 | 124 | 3.34e-21 | 88.6 |
| Msa0162570 | MtrunA17_Chr7g0233541 | 28.929 | 280 | 135 | 8 | 21 | 237 | 2 | 280 | 6.56e-21 | 91.7 |
| Msa0162570 | MtrunA17_Chr1g0163141 | 35.366 | 164 | 86 | 3 | 17 | 180 | 7 | 150 | 4.96e-20 | 86.7 |
| Msa0162570 | MtrunA17_Chr7g0233571 | 45.455 | 99 | 48 | 2 | 9 | 101 | 10 | 108 | 1.04e-18 | 84.0 |
| Msa0162570 | MtrunA17_Chr3g0103151 | 35.714 | 126 | 74 | 4 | 9 | 130 | 12 | 134 | 3.26e-18 | 80.9 |
| Msa0162570 | MtrunA17_Chr5g0419201 | 38.947 | 95 | 56 | 1 | 14 | 106 | 25 | 119 | 1.27e-17 | 80.1 |
| Msa0162570 | MtrunA17_Chr3g0103191 | 34.677 | 124 | 73 | 3 | 9 | 128 | 12 | 131 | 2.58e-17 | 80.5 |
| Msa0162570 | MtrunA17_Chr1g0163161 | 41.837 | 98 | 54 | 2 | 33 | 128 | 1 | 97 | 5.49e-17 | 76.6 |
| Msa0162570 | MtrunA17_Chr6g0467351 | 36.036 | 111 | 68 | 2 | 13 | 120 | 23 | 133 | 2.89e-16 | 77.4 |
| Msa0162570 | MtrunA17_Chr8g0390841 | 38.889 | 90 | 53 | 1 | 14 | 101 | 48 | 137 | 9.91e-16 | 78.2 |
| Msa0162570 | MtrunA17_Chr1g0163071 | 35.455 | 110 | 66 | 2 | 21 | 128 | 2 | 108 | 1.27e-14 | 73.9 |
| Msa0162570 | MtrunA17_Chr3g0077411 | 25.301 | 249 | 155 | 8 | 14 | 235 | 271 | 515 | 1.38e-14 | 74.7 |
| Msa0162570 | MtrunA17_Chr4g0067431 | 34.307 | 137 | 76 | 4 | 9 | 138 | 15 | 144 | 1.77e-14 | 73.6 |
| Msa0162570 | MtrunA17_Chr3g0077451 | 25.532 | 235 | 151 | 7 | 19 | 238 | 10 | 235 | 3.48e-14 | 71.6 |
| Msa0162570 | MtrunA17_Chr7g0233531 | 39.216 | 102 | 59 | 2 | 21 | 120 | 2 | 102 | 1.47e-13 | 70.1 |
| Msa0162570 | MtrunA17_Chr1g0163221 | 39.560 | 91 | 52 | 2 | 14 | 101 | 20 | 110 | 2.25e-13 | 70.5 |
| Msa0162570 | MtrunA17_Chr4g0033961 | 33.333 | 135 | 80 | 4 | 7 | 131 | 4 | 138 | 3.75e-13 | 70.1 |
| Msa0162570 | MtrunA17_Chr5g0419211 | 34.694 | 98 | 61 | 2 | 157 | 253 | 9 | 104 | 4.64e-13 | 65.1 |
| Msa0162570 | MtrunA17_Chr3g0077461 | 23.767 | 223 | 149 | 5 | 14 | 226 | 246 | 457 | 2.22e-12 | 68.2 |
| Msa0162570 | MtrunA17_Chr1g0162441 | 33.333 | 111 | 67 | 3 | 7 | 110 | 5 | 115 | 4.18e-11 | 63.9 |
| Msa0162570 | MtrunA17_Chr5g0429931 | 24.051 | 237 | 159 | 8 | 20 | 238 | 10 | 243 | 6.72e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162570 | AT3G18990.2 | 33.607 | 122 | 75 | 2 | 7 | 122 | 4 | 125 | 1.65e-13 | 71.6 |
| Msa0162570 | AT3G18990.1 | 33.607 | 122 | 75 | 2 | 7 | 122 | 4 | 125 | 1.91e-13 | 70.9 |
Find 73 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGGTTCGTTTC+TGG | 0.065597 | 1_4:-39667464 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1_4:+39666266 | Msa0162570:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1_4:-39666249 | None:intergenic |
| TTTGCCAAGTTTCTGAAATA+TGG | 0.185660 | 1_4:+39666334 | Msa0162570:CDS |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1_4:+39668513 | Msa0162570:three_prime_UTR |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1_4:-39667427 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_4:+39668313 | Msa0162570:CDS |
| CTCTTAACTTTCAAATTCTT+AGG | 0.273033 | 1_4:+39666361 | Msa0162570:CDS |
| ATCATCAACGGATTTGATAT+TGG | 0.277153 | 1_4:-39666440 | None:intergenic |
| AAAATATTACAAACAATCAT+AGG | 0.285288 | 1_4:-39668650 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_4:+39666290 | Msa0162570:CDS |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1_4:-39666199 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1_4:+39667257 | Msa0162570:CDS |
| TGTCCATGACAAGGTTATAA+AGG | 0.295503 | 1_4:+39667590 | Msa0162570:intron |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1_4:+39666203 | Msa0162570:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1_4:-39666241 | None:intergenic |
| CTAGTTCTTTGAACTTGCTT+TGG | 0.330347 | 1_4:-39666568 | None:intergenic |
| GTGTTTGATGTCTCAATTGA+TGG | 0.342024 | 1_4:+39668481 | Msa0162570:three_prime_UTR |
| AAGACATTGCAGGAACTTCT+AGG | 0.350581 | 1_4:+39667636 | Msa0162570:CDS |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1_4:-39666259 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1_4:-39666240 | None:intergenic |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1_4:-39668511 | None:intergenic |
| GTCCATGACAAGGTTATAAA+GGG | 0.373041 | 1_4:+39667591 | Msa0162570:intron |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1_4:-39666416 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1_4:+39668385 | Msa0162570:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1_4:-39666258 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1_4:+39667258 | Msa0162570:CDS |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1_4:-39666035 | None:intergenic |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1_4:-39667479 | None:intergenic |
| AAAGAATGCGAAGTGGAGAT+TGG | 0.431760 | 1_4:+39668419 | Msa0162570:CDS |
| GCATAACACATTCAAGGTTA+TGG | 0.436923 | 1_4:+39668137 | Msa0162570:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1_4:+39668280 | Msa0162570:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1_4:+39668362 | Msa0162570:CDS |
| CCTAGGAATTTCTTTGAGGT+TGG | 0.447970 | 1_4:-39667475 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1_4:+39666574 | Msa0162570:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1_4:-39667223 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_4:+39668314 | Msa0162570:CDS |
| CCAACCTCAAAGAAATTCCT+AGG | 0.466549 | 1_4:+39667475 | Msa0162570:CDS |
| ATATCCATATTTCAGAAACT+TGG | 0.480994 | 1_4:-39666338 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 1_4:+39666526 | Msa0162570:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1_4:+39667293 | Msa0162570:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1_4:+39667401 | Msa0162570:CDS |
| GAGTGATAAGGGTTCGGATG+AGG | 0.506418 | 1_4:+39666537 | Msa0162570:CDS |
| AATATCAAATCCGTTGATGA+TGG | 0.518911 | 1_4:+39666442 | Msa0162570:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1_4:+39667272 | Msa0162570:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1_4:+39668279 | Msa0162570:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 1_4:+39666525 | Msa0162570:CDS |
| GTAAAGAAGGAAGACATTGC+AGG | 0.528901 | 1_4:+39667626 | Msa0162570:CDS |
| GATCTCTTGTGGTGTAAAGA+AGG | 0.529335 | 1_4:+39667613 | Msa0162570:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_4:+39668301 | Msa0162570:CDS |
| TTAACTTTCAAATTCTTAGG+TGG | 0.532981 | 1_4:+39666364 | Msa0162570:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1_4:+39666192 | Msa0162570:intron |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1_4:+39668380 | Msa0162570:CDS |
| AAATATTACAAACAATCATA+GGG | 0.540076 | 1_4:-39668649 | None:intergenic |
| TACAGAAGATCGTGATGAGA+TGG | 0.542693 | 1_4:+39668113 | Msa0162570:intron |
| TGAAGTGAGTGATAAGGGTT+CGG | 0.543070 | 1_4:+39666531 | Msa0162570:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1_4:+39666244 | Msa0162570:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1_4:+39668384 | Msa0162570:CDS |
| GATGGAGCATAACACATTCA+AGG | 0.549844 | 1_4:+39668131 | Msa0162570:CDS |
| GGCTTCAGCACCATCATCAA+CGG | 0.558014 | 1_4:-39666452 | None:intergenic |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1_4:+39668265 | Msa0162570:intron |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1_4:+39668386 | Msa0162570:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1_4:+39668281 | Msa0162570:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1_4:+39668155 | Msa0162570:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1_4:+39667279 | Msa0162570:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1_4:+39667335 | Msa0162570:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1_4:+39667262 | Msa0162570:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 1_4:+39666208 | Msa0162570:CDS |
| GGTTATAAAGGGATCTCTTG+TGG | 0.601408 | 1_4:+39667602 | Msa0162570:intron |
| ATTTATGAAAGAATGCGAAG+TGG | 0.602214 | 1_4:+39668412 | Msa0162570:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_4:+39668327 | Msa0162570:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1_4:-39666015 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_4:+39668315 | Msa0162570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTTTTTAAATT+TGG | + | chr1_4:39667791-39667810 | Msa0162570:intron | 0.0% |
| !!! | TATTTTAAAGTTAAGATATT+TGG | + | chr1_4:39666391-39666410 | Msa0162570:CDS | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1_4:39666419-39666438 | None:intergenic | 10.0% |
| !!! | TATGATAAACAAAATAATTT+TGG | + | chr1_4:39666916-39666935 | Msa0162570:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1_4:39667712-39667731 | Msa0162570:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1_4:39667713-39667732 | Msa0162570:intron | 10.0% |
| !!! | AAACTTATTAATGATTTTTA+TGG | + | chr1_4:39667819-39667838 | Msa0162570:intron | 10.0% |
| !!! | ATATTATTATTTCTAATTCA+CGG | - | chr1_4:39667896-39667915 | None:intergenic | 10.0% |
| !!! | TTTATTTATGTTTTTTTTGA+AGG | + | chr1_4:39667915-39667934 | Msa0162570:intron | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1_4:39668044-39668063 | Msa0162570:intron | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1_4:39668045-39668064 | Msa0162570:intron | 10.0% |
| !! | ACATTATAAATGAAACATAA+TGG | - | chr1_4:39666111-39666130 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_4:39666305-39666324 | Msa0162570:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_4:39666306-39666325 | Msa0162570:CDS | 15.0% |
| !! | ATTACTAATTTACTAGATTT+AGG | + | chr1_4:39666676-39666695 | Msa0162570:intron | 15.0% |
| !!! | AAATAATCTTTAAATTTTGC+AGG | + | chr1_4:39666985-39667004 | Msa0162570:intron | 15.0% |
| !!! | AAAAAAAGGATTTTCATTAT+TGG | - | chr1_4:39667079-39667098 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAAAA+AGG | - | chr1_4:39667093-39667112 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_4:39667501-39667520 | Msa0162570:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1_4:39667873-39667892 | None:intergenic | 15.0% |
| !!! | TATTATTATTTCTAATTCAC+GGG | - | chr1_4:39667895-39667914 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1_4:39668030-39668049 | None:intergenic | 15.0% |
| !!! | AAATTTTTATTTGTATTTGC+AGG | + | chr1_4:39668253-39668272 | Msa0162570:intron | 15.0% |
| !!! | AATTTTTATTTGTATTTGCA+GGG | + | chr1_4:39668254-39668273 | Msa0162570:intron | 15.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1_4:39666267-39666286 | Msa0162570:CDS | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1_4:39666759-39666778 | Msa0162570:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1_4:39666760-39666779 | Msa0162570:intron | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1_4:39667242-39667261 | Msa0162570:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_4:39667430-39667449 | None:intergenic | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1_4:39667664-39667683 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1_4:39667664-39667683 | Msa0162570:CDS | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1_4:39667665-39667684 | Msa0162570:CDS | 20.0% |
| !!! | TTAATGATTTTTATGGTTCT+TGG | + | chr1_4:39667826-39667845 | Msa0162570:intron | 20.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1_4:39668179-39668198 | Msa0162570:intron | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1_4:39668514-39668533 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1_4:39668513-39668532 | Msa0162570:three_prime_UTR | 20.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr1_4:39666027-39666046 | Msa0162570:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr1_4:39666038-39666057 | None:intergenic | 25.0% |
| !!! | TTTTAATTTCTTTGTTGCAG+AGG | + | chr1_4:39666173-39666192 | Msa0162570:intron | 25.0% |
| !! | TTTAATTTCTTTGTTGCAGA+GGG | + | chr1_4:39666174-39666193 | Msa0162570:intron | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr1_4:39666202-39666221 | None:intergenic | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr1_4:39666203-39666222 | Msa0162570:CDS | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr1_4:39666243-39666262 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr1_4:39666244-39666263 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr1_4:39666244-39666263 | Msa0162570:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1_4:39666266-39666285 | Msa0162570:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr1_4:39666341-39666360 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr1_4:39666361-39666380 | Msa0162570:CDS | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr1_4:39666364-39666383 | Msa0162570:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1_4:39666648-39666667 | Msa0162570:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | + | chr1_4:39666787-39666806 | Msa0162570:intron | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1_4:39667197-39667216 | Msa0162570:intron | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1_4:39667226-39667245 | None:intergenic | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1_4:39667241-39667260 | Msa0162570:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1_4:39667328-39667347 | Msa0162570:CDS | 25.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1_4:39667495-39667514 | None:intergenic | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1_4:39667962-39667981 | Msa0162570:intron | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1_4:39668177-39668196 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1_4:39668313-39668332 | Msa0162570:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1_4:39668314-39668333 | Msa0162570:CDS | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1_4:39668362-39668381 | Msa0162570:CDS | 25.0% |
| ! | ATCATAGGGCAAAAATTTAA+AGG | - | chr1_4:39668638-39668657 | None:intergenic | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_4:39666208-39666227 | Msa0162570:CDS | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1_4:39666270-39666289 | Msa0162570:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr1_4:39666334-39666353 | Msa0162570:CDS | 30.0% |
| ! | ATCATCAACGGATTTGATAT+TGG | - | chr1_4:39666443-39666462 | None:intergenic | 30.0% |
| ! | AATATCAAATCCGTTGATGA+TGG | + | chr1_4:39666442-39666461 | Msa0162570:CDS | 30.0% |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr1_4:39666509-39666528 | None:intergenic | 30.0% |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr1_4:39666574-39666593 | Msa0162570:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1_4:39667127-39667146 | None:intergenic | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1_4:39667204-39667223 | None:intergenic | 30.0% | |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1_4:39667331-39667350 | Msa0162570:CDS | 30.0% | |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1_4:39667401-39667420 | Msa0162570:CDS | 30.0% |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1_4:39667482-39667501 | None:intergenic | 30.0% | |
| ! | TATTTCTTTTGTCCATGACA+AGG | + | chr1_4:39667581-39667600 | Msa0162570:intron | 30.0% |
| TTGATGTAATTAATCCTACC+GGG | - | chr1_4:39668176-39668195 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1_4:39668279-39668298 | Msa0162570:CDS | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1_4:39668280-39668299 | Msa0162570:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1_4:39668315-39668334 | Msa0162570:CDS | 30.0% | |
| ATTTATGAAAGAATGCGAAG+TGG | + | chr1_4:39668412-39668431 | Msa0162570:CDS | 30.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr1_4:39666261-39666280 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr1_4:39666262-39666281 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_4:39666280-39666299 | Msa0162570:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_4:39666290-39666309 | Msa0162570:CDS | 35.0% | |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr1_4:39666476-39666495 | None:intergenic | 35.0% |
| AAGTGATGAAGTGAGTGATA+AGG | + | chr1_4:39666525-39666544 | Msa0162570:CDS | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | + | chr1_4:39666526-39666545 | Msa0162570:CDS | 35.0% | |
| ! | CTAGTTCTTTGAACTTGCTT+TGG | - | chr1_4:39666571-39666590 | None:intergenic | 35.0% |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr1_4:39666594-39666613 | Msa0162570:intron | 35.0% | |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1_4:39666626-39666645 | None:intergenic | 35.0% |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1_4:39666625-39666644 | Msa0162570:intron | 35.0% | |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1_4:39666632-39666651 | None:intergenic | 35.0% |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1_4:39666633-39666652 | None:intergenic | 35.0% |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1_4:39667050-39667069 | None:intergenic | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1_4:39667051-39667070 | None:intergenic | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1_4:39667119-39667138 | Msa0162570:intron | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1_4:39667257-39667276 | Msa0162570:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1_4:39667258-39667277 | Msa0162570:CDS | 35.0% | |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1_4:39667272-39667291 | Msa0162570:CDS | 35.0% |
| TGTCCATGACAAGGTTATAA+AGG | + | chr1_4:39667590-39667609 | Msa0162570:intron | 35.0% | |
| GTCCATGACAAGGTTATAAA+GGG | + | chr1_4:39667591-39667610 | Msa0162570:intron | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1_4:39667596-39667615 | None:intergenic | 35.0% | |
| GCATAACACATTCAAGGTTA+TGG | + | chr1_4:39668137-39668156 | Msa0162570:CDS | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1_4:39668281-39668300 | Msa0162570:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr1_4:39668301-39668320 | Msa0162570:CDS | 35.0% | |
| GTGTTTGATGTCTCAATTGA+TGG | + | chr1_4:39668481-39668500 | Msa0162570:three_prime_UTR | 35.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr1_4:39666192-39666211 | Msa0162570:intron | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr1_4:39666252-39666271 | None:intergenic | 40.0% | |
| TGAAGTGAGTGATAAGGGTT+CGG | + | chr1_4:39666531-39666550 | Msa0162570:CDS | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1_4:39667005-39667024 | Msa0162570:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1_4:39667025-39667044 | None:intergenic | 40.0% |
| ATGTCACATACTTACGCCAA+TGG | + | chr1_4:39667108-39667127 | Msa0162570:intron | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1_4:39667335-39667354 | Msa0162570:CDS | 40.0% | |
| !! | CCTAGGAATTTCTTTGAGGT+TGG | - | chr1_4:39667478-39667497 | None:intergenic | 40.0% |
| CCAACCTCAAAGAAATTCCT+AGG | + | chr1_4:39667475-39667494 | Msa0162570:CDS | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1_4:39667602-39667621 | Msa0162570:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1_4:39667613-39667632 | Msa0162570:CDS | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1_4:39667626-39667645 | Msa0162570:CDS | 40.0% | |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1_4:39667636-39667655 | Msa0162570:CDS | 40.0% | |
| TACAGAAGATCGTGATGAGA+TGG | + | chr1_4:39668113-39668132 | Msa0162570:intron | 40.0% | |
| GATGGAGCATAACACATTCA+AGG | + | chr1_4:39668131-39668150 | Msa0162570:CDS | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1_4:39668155-39668174 | Msa0162570:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1_4:39668284-39668303 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1_4:39668327-39668346 | Msa0162570:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr1_4:39668385-39668404 | Msa0162570:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr1_4:39668386-39668405 | Msa0162570:CDS | 40.0% | |
| AAAGAATGCGAAGTGGAGAT+TGG | + | chr1_4:39668419-39668438 | Msa0162570:CDS | 40.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1_4:39667014-39667033 | Msa0162570:intron | 45.0% | |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1_4:39667279-39667298 | Msa0162570:CDS | 45.0% |
| !! | CTTTGAGGTTGGTTCGTTTC+TGG | - | chr1_4:39667467-39667486 | None:intergenic | 45.0% |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1_4:39668265-39668284 | Msa0162570:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr1_4:39668380-39668399 | Msa0162570:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr1_4:39668384-39668403 | Msa0162570:CDS | 45.0% | |
| !!! | AAAAAAAATCATATTTTTAT+AGG | - | chr1_4:39666870-39666889 | None:intergenic | 5.0% |
| !!! | AAATATGATTTTTTTTTTTA+AGG | + | chr1_4:39666874-39666893 | Msa0162570:intron | 5.0% |
| GGCTTCAGCACCATCATCAA+CGG | - | chr1_4:39666455-39666474 | None:intergenic | 50.0% | |
| ! | GGTGCTGAAGCCACAAAAAG+AGG | + | chr1_4:39666463-39666482 | Msa0162570:CDS | 50.0% |
| GAGTGATAAGGGTTCGGATG+AGG | + | chr1_4:39666537-39666556 | Msa0162570:CDS | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1_4:39667262-39667281 | Msa0162570:CDS | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1_4:39667293-39667312 | Msa0162570:CDS | 50.0% |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1_4:39668159-39668178 | Msa0162570:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39666017 | 39668669 | 39666017 | ID=Msa0162570;Name=Msa0162570 |
| chr1_4 | mRNA | 39666017 | 39668669 | 39666017 | ID=Msa0162570-mRNA-1;Parent=Msa0162570;Name=Msa0162570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.6|0.66|1|0.6|0.66|6|206|360 |
| chr1_4 | exon | 39666017 | 39666073 | 39666017 | ID=Msa0162570-mRNA-1:exon:11485;Parent=Msa0162570-mRNA-1 |
| chr1_4 | exon | 39666193 | 39666606 | 39666193 | ID=Msa0162570-mRNA-1:exon:11486;Parent=Msa0162570-mRNA-1 |
| chr1_4 | exon | 39667217 | 39667496 | 39667217 | ID=Msa0162570-mRNA-1:exon:11487;Parent=Msa0162570-mRNA-1 |
| chr1_4 | exon | 39667603 | 39667686 | 39667603 | ID=Msa0162570-mRNA-1:exon:11488;Parent=Msa0162570-mRNA-1 |
| chr1_4 | exon | 39668118 | 39668176 | 39668118 | ID=Msa0162570-mRNA-1:exon:11489;Parent=Msa0162570-mRNA-1 |
| chr1_4 | exon | 39668275 | 39668669 | 39668275 | ID=Msa0162570-mRNA-1:exon:11490;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39666017 | 39666073 | 39666017 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39666193 | 39666606 | 39666193 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39667217 | 39667496 | 39667217 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39667603 | 39667686 | 39667603 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39668118 | 39668176 | 39668118 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | CDS | 39668275 | 39668463 | 39668275 | ID=Msa0162570-mRNA-1:cds;Parent=Msa0162570-mRNA-1 |
| chr1_4 | three_prime_UTR | 39668464 | 39668669 | 39668464 | ID=Msa0162570-mRNA-1:three_prime_utr;Parent=Msa0162570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
