AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163290 MtrunA17_Chr7g0228401 52.321 474 137 5 1 388 25 495 1.91e-151 437
Msa0163290 MtrunA17_Chr1g0177901 89.623 212 18 1 182 393 4 211 6.33e-138 392
Msa0163290 MtrunA17_Chr7g0228481 52.404 416 148 9 1 390 25 416 6.73e-129 377
Msa0163290 MtrunA17_Chr7g0228531 52.404 416 148 9 1 390 25 416 1.41e-128 377
Msa0163290 MtrunA17_Chr7g0233061 40.960 354 167 9 38 380 36 358 1.68e-66 215
Msa0163290 MtrunA17_Chr7g0233161 46.774 248 107 3 1 223 103 350 4.12e-66 214
Msa0163290 MtrunA17_Chr4g0046181 46.774 248 107 4 1 223 25 272 1.96e-61 199
Msa0163290 MtrunA17_Chr7g0233151 54.971 171 60 5 222 390 1 156 8.18e-50 166
Msa0163290 MtrunA17_Chr3g0117511 44.444 216 103 5 109 311 119 330 1.33e-47 168
Msa0163290 MtrunA17_Chr4g0058991 56.061 132 57 1 165 296 202 332 2.76e-45 162
Msa0163290 MtrunA17_Chr5g0429661 47.879 165 75 4 172 327 122 284 2.58e-44 157
Msa0163290 MtrunA17_Chr7g0238631 50.000 124 60 1 145 268 88 209 4.24e-34 133
Msa0163290 MtrunA17_Chr1g0157731 53.846 104 47 1 172 274 91 194 1.27e-32 130
Msa0163290 MtrunA17_Chr3g0139671 53.846 104 47 1 172 274 85 188 7.92e-32 127
Msa0163290 MtrunA17_Chr4g0008551 53.535 99 46 0 172 270 38 136 3.84e-31 121
Msa0163290 MtrunA17_Chr5g0397841 54.808 104 45 1 165 266 101 204 8.47e-30 120
Msa0163290 MtrunA17_Chr5g0397841 33.333 99 62 2 171 265 54 152 2.03e-11 65.5
Msa0163290 MtrunA17_Chr2g0309911 49.000 100 50 1 170 268 11 110 6.81e-28 112
Msa0163290 MtrunA17_Chr4g0022911 40.000 155 83 4 166 314 9 159 1.33e-27 110
Msa0163290 MtrunA17_Chr3g0133601 50.000 96 48 0 172 267 37 132 1.84e-27 108
Msa0163290 MtrunA17_Chr4g0053431 52.083 96 46 0 172 267 5 100 2.26e-27 109
Msa0163290 MtrunA17_Chr4g0022901 40.769 130 74 2 166 292 9 138 3.90e-27 108
Msa0163290 MtrunA17_Chr5g0401731 42.537 134 70 2 163 289 6 139 6.39e-27 109
Msa0163290 MtrunA17_Chr5g0437321 51.042 96 47 0 172 267 19 114 2.03e-26 107
Msa0163290 MtrunA17_Chr5g0410961 44.762 105 57 1 167 270 9 113 2.53e-26 108
Msa0163290 MtrunA17_Chr2g0281071 45.794 107 57 1 165 270 8 114 5.12e-26 107
Msa0163290 MtrunA17_Chr8g0342541 46.078 102 54 1 170 270 12 113 5.68e-26 107
Msa0163290 MtrunA17_Chr4g0048511 44.860 107 58 1 165 270 8 114 7.20e-26 107
Msa0163290 MtrunA17_Chr5g0395281 46.078 102 54 1 167 267 9 110 7.43e-26 106
Msa0163290 MtrunA17_Chr4g0022931 46.154 104 55 1 166 268 9 112 7.67e-26 105
Msa0163290 MtrunA17_Chr2g0323351 42.857 119 64 2 170 287 12 127 1.55e-25 103
Msa0163290 MtrunA17_Chr1g0193371 37.931 145 77 4 170 311 12 146 1.58e-25 106
Msa0163290 MtrunA17_Chr4g0039971 46.078 102 54 1 167 267 10 111 1.66e-25 105
Msa0163290 MtrunA17_Chr4g0046171 48.571 140 55 4 253 390 1 125 2.19e-25 100
Msa0163290 MtrunA17_Chr2g0323411 45.714 105 56 1 167 270 9 113 2.27e-25 105
Msa0163290 MtrunA17_Chr2g0330041 46.078 102 54 1 170 270 12 113 3.57e-25 105
Msa0163290 MtrunA17_Chr3g0115821 46.078 102 54 1 167 267 9 110 4.24e-25 104
Msa0163290 MtrunA17_Chr3g0099131 46.535 101 53 1 168 267 39 139 4.29e-25 107
Msa0163290 MtrunA17_Chr7g0270891 31.746 189 119 3 170 355 12 193 4.35e-25 105
Msa0163290 MtrunA17_Chr8g0342521 45.098 102 55 1 170 270 12 113 5.31e-25 104
Msa0163290 MtrunA17_Chr3g0088461 45.714 105 56 1 167 270 19 123 7.04e-25 103
Msa0163290 MtrunA17_Chr1g0193801 38.636 132 69 3 170 298 12 134 1.23e-24 104
Msa0163290 MtrunA17_Chr5g0397231 35.294 153 94 3 164 315 9 157 1.54e-24 103
Msa0163290 MtrunA17_Chr1g0154031 48.485 99 50 1 170 267 76 174 1.98e-24 103
Msa0163290 MtrunA17_Chr6g0454921 47.059 102 54 0 165 266 8 109 2.02e-24 99.8
Msa0163290 MtrunA17_Chr4g0042501 40.945 127 74 1 140 265 72 198 2.33e-24 103
Msa0163290 MtrunA17_Chr5g0435101 36.364 165 94 4 167 326 8 166 3.02e-24 99.4
Msa0163290 MtrunA17_Chr4g0037141 40.769 130 69 3 172 300 14 136 3.34e-24 101
Msa0163290 MtrunA17_Chr1g0211161 44.000 100 55 1 170 268 13 112 4.43e-24 99.4
Msa0163290 MtrunA17_Chr5g0417621 47.000 100 53 0 166 265 128 227 4.51e-24 103
Msa0163290 MtrunA17_Chr7g0274581 46.465 99 52 1 170 267 12 110 4.68e-24 98.6
Msa0163290 MtrunA17_Chr8g0354661 41.129 124 68 3 148 267 13 135 5.05e-24 103
Msa0163290 MtrunA17_Chr2g0328771 40.870 115 63 2 170 279 20 134 5.89e-24 101
Msa0163290 MtrunA17_Chr8g0385321 44.660 103 55 2 172 272 14 116 6.74e-24 100
Msa0163290 MtrunA17_Chr7g0271241 44.898 98 53 1 170 266 12 109 7.40e-24 102
Msa0163290 MtrunA17_Chr8g0342481 45.631 103 54 2 170 270 12 114 7.61e-24 102
Msa0163290 MtrunA17_Chr4g0013361 36.646 161 86 5 170 321 10 163 8.31e-24 100
Msa0163290 MtrunA17_Chr8g0349261 45.000 100 53 2 170 267 13 112 9.15e-24 100
Msa0163290 MtrunA17_Chr1g0167661 44.444 108 57 2 170 274 12 119 9.61e-24 99.0
Msa0163290 MtrunA17_Chr6g0452271 41.905 105 60 1 167 270 9 113 1.09e-23 100
Msa0163290 MtrunA17_Chr3g0117091 43.137 102 57 1 170 270 12 113 1.23e-23 100
Msa0163290 MtrunA17_Chr4g0055981 42.727 110 60 2 172 278 57 166 1.33e-23 98.2
Msa0163290 MtrunA17_Chr8g0387421 42.857 105 56 2 164 267 9 110 2.45e-23 99.4
Msa0163290 MtrunA17_Chr3g0131121 45.631 103 54 2 172 272 14 116 2.78e-23 99.0
Msa0163290 MtrunA17_Chr4g0058631 43.137 102 57 1 170 270 12 113 3.01e-23 99.8
Msa0163290 MtrunA17_Chr6g0480581 40.984 122 69 1 172 293 4 122 3.21e-23 97.4
Msa0163290 MtrunA17_Chr4g0032401 45.000 100 54 1 170 268 17 116 3.43e-23 99.4
Msa0163290 MtrunA17_Chr8g0346561 45.455 99 53 1 170 267 12 110 3.46e-23 98.6
Msa0163290 MtrunA17_Chr3g0080861 44.444 99 54 1 170 267 37 135 4.44e-23 100
Msa0163290 MtrunA17_Chr7g0275911 44.444 99 54 1 170 267 12 110 4.99e-23 97.1
Msa0163290 MtrunA17_Chr5g0416341 42.500 120 65 2 150 267 4 121 7.91e-23 99.8
Msa0163290 MtrunA17_Chr7g0228231 42.718 103 58 1 166 267 10 112 8.21e-23 95.5
Msa0163290 MtrunA17_Chr6g0460671 38.406 138 82 1 131 265 55 192 1.04e-22 98.2
Msa0163290 MtrunA17_Chr4g0022891 39.815 108 64 1 170 276 12 119 1.36e-22 95.5
Msa0163290 MtrunA17_Chr1g0187761 38.793 116 69 2 170 283 12 127 1.46e-22 95.9
Msa0163290 MtrunA17_Chr8g0343831 43.434 99 55 1 170 267 8 106 1.72e-22 95.5
Msa0163290 MtrunA17_Chr6g0460661 43.878 98 55 0 172 269 16 113 1.90e-22 93.2
Msa0163290 MtrunA17_Chr3g0103281 42.718 103 58 1 166 267 8 110 2.16e-22 96.7
Msa0163290 MtrunA17_Chr4g0044421 46.078 102 50 2 172 270 14 113 2.21e-22 93.6
Msa0163290 MtrunA17_Chr7g0261281 43.434 99 55 1 170 267 12 110 2.55e-22 95.5
Msa0163290 MtrunA17_Chr7g0240821 37.857 140 71 3 175 312 6 131 2.65e-22 94.4
Msa0163290 MtrunA17_Chr4g0070641 44.444 99 54 1 170 267 12 110 2.98e-22 92.8
Msa0163290 MtrunA17_Chr4g0057031 42.424 99 56 1 170 267 12 110 3.24e-22 95.1
Msa0163290 MtrunA17_Chr5g0434911 40.678 118 66 2 154 270 8 122 3.69e-22 95.1
Msa0163290 MtrunA17_Chr1g0203411 43.434 99 55 1 170 267 12 110 3.75e-22 95.5
Msa0163290 MtrunA17_Chr4g0070611 44.444 99 54 1 170 267 12 110 4.15e-22 95.5
Msa0163290 MtrunA17_Chr6g0450101 36.800 125 77 2 166 288 10 134 4.77e-22 93.2
Msa0163290 MtrunA17_Chr1g0167691 42.424 99 56 1 170 267 12 110 4.98e-22 94.4
Msa0163290 MtrunA17_Chr1g0186061 40.777 103 60 1 166 267 16 118 5.88e-22 94.4
Msa0163290 MtrunA17_Chr1g0194291 39.823 113 67 1 156 267 7 119 7.17e-22 94.0
Msa0163290 MtrunA17_Chr7g0254261 51.064 94 46 0 172 265 89 182 9.99e-22 95.5
Msa0163290 MtrunA17_Chr8g0362231 39.394 132 74 2 159 284 5 136 1.01e-21 96.3
Msa0163290 MtrunA17_Chr1g0180391 43.000 100 56 1 169 267 18 117 1.01e-21 92.8
Msa0163290 MtrunA17_Chr7g0228991 43.434 99 55 1 170 267 29 127 1.04e-21 94.0
Msa0163290 MtrunA17_Chr1g0168661 38.525 122 69 2 166 281 17 138 1.07e-21 93.6
Msa0163290 MtrunA17_Chr1g0209661 40.196 102 60 1 165 265 22 123 1.16e-21 94.4
Msa0163290 MtrunA17_Chr5g0434931 42.157 102 58 1 170 270 35 136 1.58e-21 93.6
Msa0163290 MtrunA17_Chr5g0440781 42.056 107 60 2 168 272 10 116 1.76e-21 91.3
Msa0163290 MtrunA17_Chr5g0434841 41.026 117 63 2 155 270 10 121 1.87e-21 94.0
Msa0163290 MtrunA17_Chr4g0042671 34.559 136 82 2 170 298 12 147 1.89e-21 95.1
Msa0163290 MtrunA17_Chr8g0334881 43.243 111 61 2 164 272 4 114 2.56e-21 93.6
Msa0163290 MtrunA17_Chr5g0440761 42.056 107 60 2 168 272 10 116 2.61e-21 92.4
Msa0163290 MtrunA17_Chr5g0441141 42.056 107 60 2 168 272 10 116 2.72e-21 92.8
Msa0163290 MtrunA17_Chr1g0151941 44.000 100 54 2 170 267 12 111 2.83e-21 92.0
Msa0163290 MtrunA17_Chr3g0125801 48.936 94 48 0 172 265 16 109 3.39e-21 92.8
Msa0163290 MtrunA17_Chr4g0022881 40.816 98 57 1 171 267 13 110 4.03e-21 91.3
Msa0163290 MtrunA17_Chr7g0220341 42.574 101 55 1 170 267 25 125 4.57e-21 92.0
Msa0163290 MtrunA17_Chr5g0434571 42.424 99 56 1 170 267 48 146 4.59e-21 93.6
Msa0163290 MtrunA17_Chr3g0110351 42.424 99 56 1 170 267 12 110 4.79e-21 92.8
Msa0163290 MtrunA17_Chr7g0217741 42.424 99 56 1 170 267 12 110 5.43e-21 92.4
Msa0163290 MtrunA17_Chr3g0104491 49.398 83 38 1 222 300 17 99 6.83e-21 91.7
Msa0163290 MtrunA17_Chr4g0030881 40.000 115 61 1 171 277 8 122 8.54e-21 90.9
Msa0163290 MtrunA17_Chr5g0434831 41.121 107 62 1 165 270 2 108 1.49e-20 88.6
Msa0163290 MtrunA17_Chr2g0311221 41.584 101 58 1 168 267 12 112 1.58e-20 91.7
Msa0163290 MtrunA17_Chr7g0217221 42.424 99 56 1 170 267 12 110 1.63e-20 90.5
Msa0163290 MtrunA17_Chr4g0068061 33.974 156 83 3 170 305 12 167 2.21e-20 91.3
Msa0163290 MtrunA17_Chr6g0453471 42.424 99 56 1 170 267 12 110 2.26e-20 91.7
Msa0163290 MtrunA17_Chr2g0327351 37.815 119 72 2 167 283 9 127 3.56e-20 90.5
Msa0163290 MtrunA17_Chr5g0417821 42.857 98 55 1 170 266 7 104 3.83e-20 89.7
Msa0163290 MtrunA17_Chr7g0247131 50.685 73 34 1 197 267 4 76 6.44e-20 88.6
Msa0163290 MtrunA17_Chr5g0441131 41.346 104 59 2 169 270 8 111 6.60e-20 86.7
Msa0163290 MtrunA17_Chr3g0121241 37.374 99 61 1 170 267 42 140 7.19e-20 89.4
Msa0163290 MtrunA17_Chr4g0028311 31.953 169 103 5 167 323 9 177 7.30e-20 89.7
Msa0163290 MtrunA17_Chr5g0400821 30.601 183 102 5 167 326 9 189 8.01e-20 89.4
Msa0163290 MtrunA17_Chr2g0327821 39.286 112 67 1 167 277 3 114 8.15e-20 87.8
Msa0163290 MtrunA17_Chr1g0192411 42.157 102 58 1 170 270 12 113 8.47e-20 90.5
Msa0163290 MtrunA17_Chr4g0060721 40.566 106 61 2 170 273 13 118 1.11e-19 89.4
Msa0163290 MtrunA17_Chr7g0228891 40.404 99 58 1 170 267 12 110 1.27e-19 87.8
Msa0163290 MtrunA17_Chr2g0322521 43.697 119 66 1 150 267 9 127 1.33e-19 89.7
Msa0163290 MtrunA17_Chr1g0194301 38.384 99 60 1 170 267 33 131 1.64e-19 87.8
Msa0163290 MtrunA17_Chr6g0453211 40.404 99 58 1 170 267 12 110 1.71e-19 88.6
Msa0163290 MtrunA17_Chr3g0092401 40.196 102 60 1 170 270 13 114 2.78e-19 87.8
Msa0163290 MtrunA17_Chr8g0360111 40.404 99 58 1 170 267 25 123 3.33e-19 86.7
Msa0163290 MtrunA17_Chr6g0470971 40.777 103 60 1 166 267 10 112 3.41e-19 87.0
Msa0163290 MtrunA17_Chr4g0072751 40.777 103 59 2 167 267 9 111 3.42e-19 88.2
Msa0163290 MtrunA17_Chr1g0203441 41.837 98 56 1 171 267 14 111 3.63e-19 86.7
Msa0163290 MtrunA17_Chr4g0054391 41.176 102 58 2 167 266 9 110 3.80e-19 87.0
Msa0163290 MtrunA17_Chr3g0099141 45.882 85 45 1 167 250 37 121 3.87e-19 83.2
Msa0163290 MtrunA17_Chr7g0254411 42.453 106 59 2 170 273 12 117 3.96e-19 87.8
Msa0163290 MtrunA17_Chr1g0152011 39.806 103 60 2 167 267 9 111 6.06e-19 87.0
Msa0163290 MtrunA17_Chr1g0194951 41.414 99 57 1 170 267 12 110 7.90e-19 87.0
Msa0163290 MtrunA17_Chr3g0135311 36.508 126 77 3 167 289 9 134 1.10e-18 86.7
Msa0163290 MtrunA17_Chr7g0264641 39.806 103 60 2 167 267 9 111 3.55e-18 84.0
Msa0163290 MtrunA17_Chr2g0323321 39.759 83 49 1 168 249 9 91 7.20e-18 79.0
Msa0163290 MtrunA17_Chr3g0104501 67.308 52 17 0 172 223 133 184 1.05e-17 80.9
Msa0163290 MtrunA17_Chr6g0487491 34.783 138 75 4 167 294 9 141 3.33e-17 80.9
Msa0163290 MtrunA17_Chr2g0293911 40.196 102 60 1 167 267 21 122 3.36e-17 82.0
Msa0163290 MtrunA17_Chr5g0421201 46.392 97 44 3 224 317 12 103 7.19e-17 78.2
Msa0163290 MtrunA17_Chr5g0434901 50.000 66 33 0 205 270 9 74 1.57e-16 75.1
Msa0163290 MtrunA17_Chr4g0068921 38.318 107 65 1 167 272 21 127 2.36e-16 77.0
Msa0163290 MtrunA17_Chr7g0269831 44.444 99 54 1 170 267 12 110 8.36e-16 78.2
Msa0163290 MtrunA17_Chr8g0342511 39.241 79 47 1 167 244 9 87 5.66e-15 70.1
Msa0163290 MtrunA17_Chr8g0342531 38.272 81 49 1 167 246 9 89 7.54e-15 72.0
Msa0163290 MtrunA17_Chr7g0229101 46.970 66 35 0 205 270 8 73 1.73e-14 72.0
Msa0163290 MtrunA17_Chr7g0238651 37.113 97 58 1 172 265 7 103 2.26e-14 73.9
Msa0163290 MtrunA17_Chr8g0342461 43.038 79 43 2 170 246 12 90 2.58e-14 69.7
Msa0163290 MtrunA17_Chr4g0042611 40.260 77 45 1 170 245 12 88 2.86e-14 67.8
Msa0163290 MtrunA17_Chr8g0342471 43.038 79 43 2 170 246 12 90 3.17e-14 69.3
Msa0163290 MtrunA17_Chr5g0395221 38.750 80 48 1 167 245 9 88 3.94e-13 64.7
Msa0163290 MtrunA17_Chr2g0294811 37.662 77 47 1 170 245 12 88 5.71e-13 65.5
Msa0163290 MtrunA17_Chr7g0229131 43.939 66 37 0 205 270 8 73 1.40e-12 65.5
Msa0163290 MtrunA17_Chr5g0425591 39.286 84 49 2 169 250 8 91 1.65e-12 63.2
Msa0163290 MtrunA17_Chr7g0274481 35.417 96 61 1 170 265 5 99 2.95e-12 68.6
Msa0163290 MtrunA17_Chr3g0093811 36.709 79 46 2 193 267 2 80 7.82e-12 65.1
Msa0163290 MtrunA17_Chr5g0397691 34.737 95 59 1 171 265 6 97 8.66e-12 66.6
Msa0163290 MtrunA17_Chr6g0483051 29.710 138 88 4 174 303 71 207 1.06e-11 66.6
Msa0163290 MtrunA17_Chr6g0483051 36.458 96 60 1 170 265 118 212 7.17e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163290 AT4G18770.1 58.647 133 54 1 164 296 209 340 1.00e-48 171
Msa0163290 AT5G40360.1 38.790 281 138 7 108 364 87 357 1.90e-48 168
Msa0163290 AT3G27785.1 56.835 139 57 2 166 301 183 321 1.75e-46 165
Msa0163290 AT5G11050.1 55.147 136 61 0 145 280 78 213 3.49e-44 158
Msa0163290 AT5G58850.1 45.349 172 81 3 169 327 102 273 9.44e-43 155
Msa0163290 AT2G25230.1 47.368 152 78 2 166 316 20 170 1.79e-38 138
Msa0163290 AT5G40430.1 46.377 138 68 3 166 301 48 181 5.37e-34 127
Msa0163290 AT5G11510.3 53.846 104 47 1 172 274 81 184 5.03e-33 131
Msa0163290 AT5G11510.1 53.846 104 47 1 172 274 81 184 5.03e-33 131
Msa0163290 AT5G11510.4 53.846 104 47 1 172 274 81 184 5.03e-33 131
Msa0163290 AT5G11510.2 53.846 104 47 1 172 274 81 184 6.26e-33 131
Msa0163290 AT3G09370.2 58.763 97 40 0 172 268 135 231 6.52e-33 129
Msa0163290 AT5G11510.5 53.846 104 47 1 172 274 81 184 6.64e-33 131
Msa0163290 AT3G09370.1 58.763 97 40 0 172 268 130 226 6.77e-33 129
Msa0163290 AT3G09370.3 58.763 97 40 0 172 268 143 239 1.08e-32 129
Msa0163290 AT5G02320.1 56.701 97 42 0 172 268 127 223 9.38e-32 126
Msa0163290 AT5G02320.2 56.701 97 42 0 172 268 127 223 9.38e-32 126
Msa0163290 AT5G02320.3 56.701 97 42 0 172 268 67 163 1.15e-31 125
Msa0163290 AT4G32730.5 50.943 106 51 1 170 274 85 190 2.24e-30 124
Msa0163290 AT4G32730.4 50.943 106 51 1 170 274 85 190 2.24e-30 124
Msa0163290 AT4G32730.3 50.943 106 51 1 170 274 85 190 2.24e-30 124
Msa0163290 AT4G32730.2 50.943 106 51 1 170 274 85 190 2.24e-30 124
Msa0163290 AT4G32730.1 51.923 104 49 1 172 274 87 190 3.04e-30 123
Msa0163290 AT3G55730.1 53.535 99 46 0 172 270 56 154 6.43e-29 116
Msa0163290 AT3G09230.1 53.535 99 46 0 172 270 55 153 4.81e-28 114
Msa0163290 AT3G12720.1 41.606 137 74 3 152 282 1 137 6.15e-28 112
Msa0163290 AT4G00540.2 53.704 108 46 3 169 272 100 207 1.09e-27 113
Msa0163290 AT4G00540.2 34.951 103 58 2 172 265 46 148 6.08e-11 63.9
Msa0163290 AT3G11440.2 47.573 103 53 1 166 267 37 139 1.24e-27 114
Msa0163290 AT3G28470.1 46.078 102 54 1 167 267 9 110 1.42e-27 111
Msa0163290 AT4G00540.1 53.704 108 46 3 169 272 98 205 2.42e-27 112
Msa0163290 AT4G00540.1 34.951 103 58 2 172 265 44 146 8.76e-11 63.5
Msa0163290 AT3G11440.3 47.573 103 53 1 166 267 37 139 3.08e-27 113
Msa0163290 AT3G11440.4 47.573 103 53 1 166 267 37 139 3.08e-27 113
Msa0163290 AT3G11440.1 47.573 103 53 1 166 267 37 139 3.08e-27 113
Msa0163290 AT4G05100.1 45.794 107 57 1 165 270 8 114 1.52e-26 108
Msa0163290 AT1G57560.2 36.310 168 85 4 170 330 12 164 3.60e-26 106
Msa0163290 AT3G53200.1 41.958 143 75 4 165 300 4 145 9.86e-26 104
Msa0163290 AT1G09540.1 40.559 143 76 4 170 311 12 146 1.10e-25 107
Msa0163290 AT3G13890.2 46.078 102 54 1 170 270 12 113 1.52e-25 106
Msa0163290 AT4G28110.1 46.078 102 54 1 170 270 12 113 1.57e-25 105
Msa0163290 AT3G13890.1 43.243 111 53 1 170 270 12 122 3.47e-25 105
Msa0163290 AT1G57560.1 45.000 100 54 1 170 268 12 111 3.67e-25 104
Msa0163290 AT2G26960.1 44.444 108 59 1 172 278 22 129 5.59e-25 105
Msa0163290 AT4G21440.1 47.059 102 53 1 170 270 12 113 5.90e-25 104
Msa0163290 AT4G01680.3 39.130 138 76 3 170 306 12 142 6.00e-25 102
Msa0163290 AT4G01680.1 39.130 138 76 3 170 306 12 142 6.38e-25 104
Msa0163290 AT5G55020.1 45.192 104 56 1 170 272 26 129 6.99e-25 106
Msa0163290 AT4G37260.1 48.958 96 49 0 172 267 13 108 7.90e-25 103
Msa0163290 AT1G69560.2 46.000 100 54 0 167 266 118 217 9.39e-25 104
Msa0163290 AT3G61250.1 44.444 99 54 1 170 267 12 110 9.95e-25 103
Msa0163290 AT1G69560.1 46.000 100 54 0 167 266 102 201 1.00e-24 103
Msa0163290 AT5G52600.1 42.857 119 62 2 164 281 6 119 1.03e-24 100
Msa0163290 AT4G38620.1 35.088 171 92 5 172 332 14 175 1.74e-24 102
Msa0163290 AT5G26660.1 45.000 100 54 1 170 268 12 111 1.88e-24 103
Msa0163290 AT5G06100.1 44.444 99 54 1 170 267 32 130 2.10e-24 104
Msa0163290 AT3G08500.1 46.078 102 54 1 170 270 30 131 2.66e-24 102
Msa0163290 AT5G10280.1 44.118 102 56 1 167 267 9 110 2.95e-24 102
Msa0163290 AT1G22640.1 39.098 133 69 3 166 295 8 131 3.01e-24 100
Msa0163290 AT2G23290.1 47.573 103 54 0 165 267 6 108 3.63e-24 102
Msa0163290 AT5G06100.5 44.444 99 54 1 170 267 32 130 4.26e-24 104
Msa0163290 AT5G06100.2 44.444 99 54 1 170 267 32 130 4.26e-24 104
Msa0163290 AT5G06100.3 44.444 99 54 1 170 267 32 130 4.26e-24 104
Msa0163290 AT5G06100.4 44.444 99 54 1 170 267 32 130 4.26e-24 104
Msa0163290 AT4G01680.2 36.667 150 75 3 170 306 12 154 4.44e-24 102
Msa0163290 AT5G14750.1 45.918 98 52 1 171 267 17 114 4.66e-24 99.0
Msa0163290 AT5G16770.4 43.810 105 58 1 167 270 9 113 4.94e-24 101
Msa0163290 AT5G16770.3 43.810 105 58 1 167 270 9 113 4.94e-24 101
Msa0163290 AT2G39880.1 43.925 107 55 1 172 278 50 151 4.99e-24 102
Msa0163290 AT3G50060.1 35.484 155 79 3 172 326 6 139 5.22e-24 101
Msa0163290 AT5G16770.1 43.810 105 58 1 167 270 9 113 6.37e-24 101
Msa0163290 AT5G16770.2 43.810 105 58 1 167 270 9 113 6.37e-24 101
Msa0163290 AT2G32460.1 46.465 99 52 1 170 267 18 116 6.65e-24 103
Msa0163290 AT5G12870.1 41.880 117 66 2 152 267 1 116 6.93e-24 100
Msa0163290 AT2G32460.2 46.465 99 52 1 170 267 6 104 7.06e-24 103
Msa0163290 AT2G47190.1 30.000 160 110 2 155 312 5 164 7.96e-24 100
Msa0163290 AT3G23250.1 41.803 122 67 3 170 287 12 133 8.06e-24 100
Msa0163290 AT1G17950.1 37.580 157 93 3 172 325 5 159 9.05e-24 99.4
Msa0163290 AT5G40330.1 43.689 103 57 1 166 267 8 110 9.13e-24 98.6
Msa0163290 AT4G33450.1 46.939 98 52 0 166 263 13 110 9.33e-24 99.4
Msa0163290 AT4G26930.1 45.455 99 53 1 170 267 19 117 9.68e-24 102
Msa0163290 AT1G63910.1 44.762 105 54 2 164 267 9 110 1.05e-23 101
Msa0163290 AT5G65230.1 43.137 102 57 1 167 267 9 110 1.10e-23 100
Msa0163290 AT1G26780.1 48.421 95 49 0 172 266 98 192 1.34e-23 99.8
Msa0163290 AT4G17785.1 39.623 106 63 1 166 270 9 114 1.36e-23 101
Msa0163290 AT4G17785.2 39.623 106 63 1 166 270 9 114 1.38e-23 100
Msa0163290 AT1G26780.2 48.421 95 49 0 172 266 98 192 2.11e-23 100
Msa0163290 AT5G60890.1 47.573 103 53 1 166 267 8 110 2.17e-23 99.4
Msa0163290 AT1G16490.1 39.416 137 75 3 168 301 12 143 3.09e-23 98.6
Msa0163290 AT3G02940.2 43.810 105 58 1 167 270 9 113 4.25e-23 99.0
Msa0163290 AT3G01530.1 42.857 105 59 1 164 267 19 123 4.29e-23 96.3
Msa0163290 AT4G09460.1 46.602 103 53 2 172 272 14 116 5.73e-23 97.1
Msa0163290 AT3G02940.1 43.810 105 58 1 167 270 9 113 6.08e-23 98.6
Msa0163290 AT3G02940.3 43.810 105 58 1 167 270 9 113 6.08e-23 98.6
Msa0163290 AT5G67300.1 48.958 96 49 0 172 267 6 101 6.18e-23 98.2
Msa0163290 AT3G27810.1 44.118 102 56 1 167 267 17 118 6.25e-23 96.7
Msa0163290 AT3G29020.1 47.872 94 49 0 172 265 65 158 6.38e-23 96.7
Msa0163290 AT4G34990.1 37.241 145 83 3 172 315 14 151 6.57e-23 97.8
Msa0163290 AT4G12350.1 42.424 99 56 1 170 267 12 110 6.61e-23 97.8
Msa0163290 AT3G29020.2 47.368 95 50 0 172 266 67 161 8.48e-23 97.8
Msa0163290 AT5G56110.1 44.660 103 56 1 166 267 8 110 8.70e-23 98.2
Msa0163290 AT3G30210.1 36.129 155 91 2 154 307 11 158 8.82e-23 97.4
Msa0163290 AT1G34670.1 43.137 102 57 1 167 267 9 110 1.17e-22 98.6
Msa0163290 AT2G02820.1 44.954 109 57 2 175 280 33 141 1.50e-22 99.4
Msa0163290 AT2G02820.2 46.237 93 50 0 175 267 33 125 1.62e-22 99.4
Msa0163290 AT3G27920.1 43.878 98 54 1 171 267 15 112 1.95e-22 95.1
Msa0163290 AT2G02820.3 44.954 109 57 2 175 280 33 141 1.95e-22 97.4
Msa0163290 AT1G18570.1 44.231 104 57 1 165 267 8 111 2.00e-22 97.8
Msa0163290 AT1G74430.1 41.667 108 62 1 170 276 12 119 2.93e-22 95.9
Msa0163290 AT4G22680.1 43.434 99 55 1 170 267 12 110 3.13e-22 95.5
Msa0163290 AT2G16720.1 37.580 157 81 6 172 324 14 157 3.31e-22 95.5
Msa0163290 AT5G54230.1 44.444 99 54 1 170 267 12 110 3.96e-22 96.3
Msa0163290 AT5G57620.1 42.149 121 66 3 167 283 9 129 4.51e-22 96.3
Msa0163290 AT5G62320.1 43.478 115 56 3 167 272 10 124 8.34e-22 94.0
Msa0163290 AT5G40350.1 42.157 102 58 1 167 267 14 115 1.11e-21 92.8
Msa0163290 AT1G35515.1 40.367 109 63 2 166 272 8 116 1.14e-21 92.8
Msa0163290 AT3G13540.1 29.947 187 119 3 154 337 7 184 1.18e-21 93.6
Msa0163290 AT5G17800.1 46.809 94 50 0 172 265 93 186 1.19e-21 95.1
Msa0163290 AT1G06180.1 38.596 114 68 2 170 281 12 125 1.67e-21 93.2
Msa0163290 AT1G14350.2 44.086 93 52 0 175 267 28 120 2.69e-21 95.5
Msa0163290 AT1G14350.1 44.086 93 52 0 175 267 28 120 2.69e-21 95.5
Msa0163290 AT1G56160.1 41.414 99 57 1 170 267 14 112 2.79e-21 93.6
Msa0163290 AT3G46130.1 41.026 117 67 2 162 277 2 117 3.06e-21 92.8
Msa0163290 AT3G24310.1 41.176 102 59 1 167 267 15 116 3.18e-21 92.8
Msa0163290 AT2G31180.1 41.414 99 57 1 170 267 12 110 3.28e-21 92.4
Msa0163290 AT3G60460.1 42.105 114 64 2 161 272 2 115 3.72e-21 93.2
Msa0163290 AT5G35550.1 40.336 119 67 2 166 280 10 128 4.15e-21 92.4
Msa0163290 AT5G59780.3 40.741 108 63 1 171 277 9 116 6.99e-21 91.3
Msa0163290 AT5G62470.1 40.816 98 58 0 170 267 12 109 1.25e-20 92.4
Msa0163290 AT4G13480.1 38.333 120 70 2 167 285 3 119 1.26e-20 90.9
Msa0163290 AT1G66230.1 42.000 100 55 2 170 267 12 110 1.60e-20 91.3
Msa0163290 AT5G65790.1 41.739 115 63 3 167 277 9 123 1.63e-20 92.4
Msa0163290 AT5G07690.1 43.269 104 58 1 170 272 12 115 1.96e-20 91.7
Msa0163290 AT1G68320.1 39.394 99 59 1 170 267 19 117 2.38e-20 90.9
Msa0163290 AT1G74080.1 40.777 103 60 1 166 267 8 110 2.71e-20 91.3
Msa0163290 AT5G07700.1 45.455 99 53 1 170 267 12 110 3.91e-20 90.9
Msa0163290 AT5G07700.2 45.455 99 53 1 170 267 12 110 3.91e-20 90.9
Msa0163290 AT3G48920.1 41.525 118 65 3 152 267 1 116 4.06e-20 89.4
Msa0163290 AT1G25340.2 33.108 148 90 3 171 313 19 162 4.11e-20 89.7
Msa0163290 AT1G25340.1 32.886 149 94 3 171 313 19 167 4.33e-20 89.7
Msa0163290 AT5G49330.1 41.414 99 57 1 170 267 12 110 7.52e-20 90.1
Msa0163290 AT3G01140.2 35.000 140 79 3 167 303 9 139 9.24e-20 90.1
Msa0163290 AT5G15310.4 40.404 99 58 1 170 267 12 110 1.02e-19 88.2
Msa0163290 AT1G48000.1 42.424 99 56 1 170 267 32 130 1.06e-19 87.8
Msa0163290 AT1G25340.3 42.268 97 52 1 171 267 19 111 1.08e-19 89.4
Msa0163290 AT3G01140.1 39.216 102 61 1 167 267 52 153 1.16e-19 90.1
Msa0163290 AT2G47460.1 39.286 112 65 2 170 278 12 123 1.28e-19 90.1
Msa0163290 AT3G49690.1 40.000 115 65 3 167 277 9 123 1.32e-19 89.0
Msa0163290 AT3G47600.1 40.404 99 58 1 170 267 12 110 1.43e-19 89.4
Msa0163290 AT5G15310.1 40.404 99 58 1 170 267 12 110 1.46e-19 89.0
Msa0163290 AT5G61420.2 43.434 99 55 1 170 267 12 110 1.56e-19 89.7
Msa0163290 AT1G73410.1 44.444 108 59 1 172 278 6 113 1.59e-19 87.4
Msa0163290 AT1G73410.2 44.444 108 59 1 172 278 6 113 1.74e-19 86.3
Msa0163290 AT5G15310.2 40.404 99 58 1 170 267 12 110 1.83e-19 88.6
Msa0163290 AT1G79180.1 29.082 196 130 6 167 354 11 205 2.00e-19 88.2
Msa0163290 AT4G37780.1 34.646 127 73 3 170 294 12 130 2.04e-19 88.6
Msa0163290 AT1G66370.1 41.414 99 57 1 170 267 8 106 2.44e-19 87.0
Msa0163290 AT5G23000.1 40.566 106 61 2 167 270 9 114 3.03e-19 88.2
Msa0163290 AT5G16600.1 43.000 100 54 2 170 267 12 110 3.45e-19 88.2
Msa0163290 AT5G26660.2 51.515 66 32 0 205 270 17 82 3.84e-19 87.8
Msa0163290 AT1G74650.1 41.414 99 57 1 170 267 12 110 3.89e-19 87.8
Msa0163290 AT5G62470.2 40.404 99 58 1 170 267 12 110 3.95e-19 88.2
Msa0163290 AT3G62610.1 31.336 217 128 7 170 367 12 226 4.26e-19 88.2
Msa0163290 AT1G08810.1 40.517 116 67 2 170 283 12 127 4.49e-19 87.0
Msa0163290 AT3G53200.2 45.545 101 50 2 205 300 12 112 4.70e-19 85.1
Msa0163290 AT3G28910.1 40.566 106 61 2 170 273 12 117 9.43e-19 86.7
Msa0163290 AT5G39700.1 38.938 113 65 1 155 267 43 151 1.33e-18 83.6
Msa0163290 AT3G12820.1 38.235 102 62 1 167 267 11 112 1.46e-18 84.7
Msa0163290 AT2G26950.1 34.821 112 64 2 172 278 18 125 1.86e-18 86.7
Msa0163290 AT5G14340.1 37.313 134 74 5 170 301 24 149 2.60e-18 84.7
Msa0163290 AT4G25560.1 42.857 98 55 1 171 267 11 108 3.05e-18 84.7
Msa0163290 AT5G14750.3 50.794 63 31 0 205 267 18 80 3.15e-18 82.0
Msa0163290 AT1G18710.1 32.168 143 81 3 170 311 12 139 4.28e-18 84.0
Msa0163290 AT5G35550.2 48.101 79 38 1 205 280 53 131 1.37e-17 82.4
Msa0163290 AT2G36890.1 38.261 115 68 3 167 278 9 123 1.39e-17 83.2
Msa0163290 AT5G52260.1 43.878 98 54 1 171 267 13 110 1.87e-17 82.0
Msa0163290 AT2G36890.2 38.261 115 68 3 167 278 50 164 2.17e-17 83.2
Msa0163290 AT5G49620.1 36.885 122 73 2 150 267 3 124 4.56e-17 81.6
Msa0163290 AT1G66380.1 43.434 99 55 1 170 267 8 106 1.34e-16 76.6
Msa0163290 AT1G56650.1 42.424 99 56 1 170 267 8 106 2.41e-16 78.6
Msa0163290 AT1G66390.1 44.444 99 54 1 170 267 8 106 2.88e-16 78.2
Msa0163290 AT3G27810.2 49.206 63 32 0 205 267 7 69 4.03e-16 76.3
Msa0163290 AT3G06490.1 37.255 102 63 1 165 265 14 115 9.17e-16 78.2
Msa0163290 AT3G18100.1 40.000 95 57 0 171 265 545 639 1.23e-15 79.3
Msa0163290 AT3G18100.1 35.714 98 61 2 169 265 492 588 2.13e-13 72.4
Msa0163290 AT1G79180.2 31.852 135 58 3 167 267 11 145 1.26e-15 77.8
Msa0163290 AT3G18100.3 40.000 95 57 0 171 265 497 591 1.44e-15 79.0
Msa0163290 AT3G18100.3 35.714 98 61 2 169 265 444 540 2.62e-13 72.0
Msa0163290 AT3G18100.4 40.000 95 57 0 171 265 384 478 1.75e-15 78.6
Msa0163290 AT3G18100.4 35.714 98 61 2 169 265 331 427 3.44e-13 71.6
Msa0163290 AT3G18100.2 40.000 95 57 0 171 265 332 426 2.20e-15 78.2
Msa0163290 AT3G18100.2 35.714 98 61 2 169 265 279 375 4.15e-13 71.2
Msa0163290 AT5G40350.2 47.619 63 33 0 205 267 8 70 2.54e-15 73.9
Msa0163290 AT5G59780.2 42.466 73 42 0 205 277 23 95 1.28e-14 72.8
Msa0163290 AT3G12820.2 47.619 63 33 0 205 267 2 64 1.39e-14 72.4
Msa0163290 AT3G46130.3 42.466 73 42 0 205 277 13 85 3.57e-14 71.6
Msa0163290 AT3G46130.4 42.466 73 42 0 205 277 23 95 3.69e-14 72.0
Msa0163290 AT3G47600.2 36.792 106 58 2 205 310 42 138 1.03e-13 72.0
Msa0163290 AT5G49620.2 33.088 136 73 3 150 267 3 138 1.06e-13 72.0
Msa0163290 AT1G22640.3 42.683 82 36 2 216 295 2 74 1.21e-13 69.7
Msa0163290 AT2G37630.1 37.113 97 58 1 172 265 4 100 3.68e-13 70.9
Msa0163290 AT1G71030.2 42.424 66 37 1 208 272 5 70 1.38e-12 66.2
Msa0163290 AT1G71030.1 42.424 66 37 1 208 272 19 84 1.67e-12 66.2
Msa0163290 AT5G14750.4 48.077 52 27 0 216 267 2 53 2.11e-12 64.7
Msa0163290 AT5G14750.2 48.077 52 27 0 216 267 2 53 2.11e-12 64.7
Msa0163290 AT3G23250.2 42.667 75 40 2 216 287 2 76 3.64e-12 65.9
Msa0163290 AT1G09770.1 35.417 96 61 1 170 265 5 99 5.67e-12 68.2
Msa0163290 AT1G14350.3 49.091 55 28 0 213 267 23 77 1.14e-11 66.2
Msa0163290 AT1G14350.4 49.091 55 28 0 213 267 23 77 1.14e-11 66.2
Msa0163290 AT1G66380.3 50.794 63 31 0 205 267 11 73 1.24e-11 61.6

Find 101 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTATATTGATTGGATTTA+TGG 0.069076 1_4:-41287148 None:intergenic
GTCAAATTGTTGGACTATTC+TGG 0.098803 1_4:+41287816 Msa0163290:CDS
TAACACAGACATAGGAATTT+TGG 0.161859 1_4:+41287364 Msa0163290:CDS
CTACCACCATCACTAGTTTA+TGG 0.185898 1_4:+41287449 Msa0163290:CDS
TATAACGAACATCCTCTTAA+TGG 0.242646 1_4:+41287164 Msa0163290:CDS
TTTCCTTGATCATGGTCTTC+TGG 0.267693 1_4:-41287479 None:intergenic
TCGGCTTCTTTGTAGCATTC+AGG 0.284488 1_4:-41289111 None:intergenic
AAACAAAATTTCTTTCAATA+TGG 0.288585 1_4:+41287395 Msa0163290:CDS
GGGGTTTGGTTCATTGAAAA+TGG 0.296954 1_4:-41287230 None:intergenic
ACTATTCTGGGTTTAATAAC+TGG 0.310513 1_4:+41287829 Msa0163290:CDS
ATAACGAACATCCTCTTAAT+GGG 0.328090 1_4:+41287165 Msa0163290:CDS
CCATCTTCGACCGGACATTA+AGG 0.328539 1_4:+41287914 Msa0163290:CDS
TCAAATTGTTGGACTATTCT+GGG 0.330896 1_4:+41287817 Msa0163290:CDS
AGGATGTTCGTTATATTGAT+TGG 0.335140 1_4:-41287156 None:intergenic
CAACGAAATCACTAATTCTA+AGG 0.335193 1_4:+41289177 Msa0163290:CDS
TAGGATTCTTGTCAAATTGT+TGG 0.357877 1_4:+41287806 Msa0163290:intron
TTCGAACTATTTCGCCGGTT+CGG 0.368111 1_4:-41289130 None:intergenic
GCTTCCATTTCGTTATAGTT+TGG 0.371231 1_4:-41287326 None:intergenic
GAAATTGCAAAGAGACTTCC+TGG 0.380134 1_4:+41289040 Msa0163290:CDS
TAGTTTGGTGTAAAGGTCAT+TGG 0.380184 1_4:-41287311 None:intergenic
TTCGTTATAGTTTGGTGTAA+AGG 0.392484 1_4:-41287318 None:intergenic
CAGTCGTGTGTGAAGGGGTT+TGG 0.394794 1_4:-41287244 None:intergenic
CTTGATCATGGTCTTCTGGT+TGG 0.397795 1_4:-41287475 None:intergenic
AGAACCAGTGCGGGGATCTC+TGG 0.402224 1_4:-41287068 None:intergenic
GAGTGTGGTGTTAACTTTGA+AGG 0.412449 1_4:+41289313 Msa0163290:CDS
GTTCATTGAAAATGGTTTGA+TGG 0.412683 1_4:-41287222 None:intergenic
ATCGAAGCTCACAAGATAGT+TGG 0.429234 1_4:+41289004 Msa0163290:CDS
GATGGAATGGCAAGTGGCTC+TGG 0.433866 1_4:+41289394 Msa0163290:CDS
TGGTGTTAACTTTGAAGGTT+TGG 0.435659 1_4:+41289318 Msa0163290:CDS
GAAAATGGTTTGATGGAAGA+AGG 0.438315 1_4:-41287215 None:intergenic
GGTGAACCATCACACTTCTA+TGG 0.445255 1_4:+41287187 Msa0163290:CDS
CTCAATGTTCATTATGTTGG+TGG 0.446836 1_4:-41289224 None:intergenic
TGAGAATGTTTCCTTGATCA+TGG 0.451402 1_4:-41287487 None:intergenic
CAGATTGCTAAGTTTATGAA+TGG 0.462207 1_4:+41287855 Msa0163290:CDS
TACACCAAACTATAACGAAA+TGG 0.464173 1_4:+41287322 Msa0163290:CDS
AAAGAATCCAATATAAGAAA+AGG 0.468148 1_4:+41287560 Msa0163290:CDS
AAATTCCTATGTCTGTGTTA+AGG 0.470611 1_4:-41287361 None:intergenic
ACTAAGACCAGGGTTGGTAT+AGG 0.478065 1_4:-41289269 None:intergenic
TGACCAGATGCGACAAAAGA+AGG 0.489767 1_4:+41287511 Msa0163290:CDS
AAATTCGCTCTGGGTTCCAT+TGG 0.492788 1_4:-41287273 None:intergenic
GGCACAATGAGTCATGAGAT+TGG 0.496501 1_4:+41289415 Msa0163290:CDS
ATACTCAATGTTCATTATGT+TGG 0.501812 1_4:-41289227 None:intergenic
ATGCTACAAAGAAGCCGAAC+CGG 0.502022 1_4:+41289116 Msa0163290:CDS
TGAGATTGGATCGTATCAAA+TGG 0.502967 1_4:+41289429 Msa0163290:CDS
TGATGGTTCACCCCATTAAG+AGG 0.503375 1_4:-41287176 None:intergenic
AGCATTCAGGCTGCGCTTAG+CGG 0.505773 1_4:-41289098 None:intergenic
GGAGTTCCAACGGTTCTTGA+CGG 0.518211 1_4:-41289077 None:intergenic
TCGAAGCTCACAAGATAGTT+GGG 0.518710 1_4:+41289005 Msa0163290:CDS
TGCGCTTAGCGGAGTTCCAA+CGG 0.521912 1_4:-41289087 None:intergenic
CCTTAATGTCCGGTCGAAGA+TGG 0.524062 1_4:-41287914 None:intergenic
GGTTGCAAGAGAACCAGTGC+GGG 0.524586 1_4:-41287077 None:intergenic
TGTTTGCAGTCGTGTGTGAA+GGG 0.529971 1_4:-41287250 None:intergenic
GTTACTTCAGTGGAAGAACC+TGG 0.530364 1_4:+41289340 Msa0163290:CDS
GTGTTTGCAGTCGTGTGTGA+AGG 0.531790 1_4:-41287251 None:intergenic
ATGATGTTGAATGGTGATGA+TGG 0.534000 1_4:+41289376 Msa0163290:CDS
GCAGAAGCGGAAAACAGTGC+AGG 0.534925 1_4:+41287877 Msa0163290:CDS
CAATGGACTCATGATGAGGA+TGG 0.537412 1_4:+41287584 Msa0163290:CDS
GAAAACAGTGCAGGGAGAGA+TGG 0.549730 1_4:+41287886 Msa0163290:CDS
CAACCAGAAGACCATGATCA+AGG 0.554133 1_4:+41287476 Msa0163290:CDS
ATCATTGTCACATTGCCACC+AGG 0.555348 1_4:-41289358 None:intergenic
CATCCTCATCATGAGTCCAT+TGG 0.559323 1_4:-41287583 None:intergenic
CACACGACTGCAAACACCAA+TGG 0.561905 1_4:+41287257 Msa0163290:CDS
TTCCTTTCGAACTATTTCGC+CGG 0.564862 1_4:-41289135 None:intergenic
TGAAGGTTTGGTTACTTCAG+TGG 0.567178 1_4:+41289330 Msa0163290:CDS
GATAAAGACACCTTAATGTC+CGG 0.568243 1_4:-41287924 None:intergenic
AACATCACTAAGACCAGGGT+TGG 0.571044 1_4:-41289275 None:intergenic
CCAATATAAGAAAAGGCCAA+TGG 0.575615 1_4:+41287567 Msa0163290:CDS
ACGGAGTTCTCAGTACGTCC+AGG 0.575760 1_4:-41289058 None:intergenic
AACTAGTGATGGTGGTAGAG+AGG 0.582236 1_4:-41287444 None:intergenic
AAGTTTATGAATGGCAGAAG+CGG 0.586961 1_4:+41287864 Msa0163290:CDS
GAAAGAGTCATGGAGTGAAG+AGG 0.588469 1_4:+41288967 Msa0163290:intron
AATGTGACAATGATGTTGAA+TGG 0.588727 1_4:+41289367 Msa0163290:CDS
GACCTCCTTAACACAGACAT+AGG 0.592422 1_4:+41287356 Msa0163290:CDS
CGATATGAAATTTCTGAGTG+TGG 0.592948 1_4:+41289298 Msa0163290:CDS
AAAACCAGAGATCCCCGCAC+TGG 0.593457 1_4:+41287064 None:intergenic
AGAACTCCGTCAAGAACCGT+TGG 0.593655 1_4:+41289071 Msa0163290:CDS
TCAGTGTAATTAGATGGTGC+AGG 0.594633 1_4:-41287116 None:intergenic
AACCGGCGAAATAGTTCGAA+AGG 0.596875 1_4:+41289133 Msa0163290:CDS
TAATTCTAAGGATGTTCAGA+AGG 0.597329 1_4:+41289189 Msa0163290:CDS
GACAATACCTATACCAACCC+TGG 0.599796 1_4:+41289262 Msa0163290:CDS
TGGTTTCCATAAACTAGTGA+TGG 0.599953 1_4:-41287455 None:intergenic
GTTGAATGGTGATGATGGAA+TGG 0.601518 1_4:+41289381 Msa0163290:CDS
CAGAAGCGGAAAACAGTGCA+GGG 0.604822 1_4:+41287878 Msa0163290:CDS
TTCCTATGTCTGTGTTAAGG+AGG 0.604840 1_4:-41287358 None:intergenic
ATCGAACATCACTAAGACCA+GGG 0.610910 1_4:-41289279 None:intergenic
AATGGACTCATGATGAGGAT+GGG 0.612122 1_4:+41287585 Msa0163290:CDS
ATGGCATAACCATCTTCGAC+CGG 0.615742 1_4:+41287905 Msa0163290:CDS
TGTGTTAAGGAGGTCATGCA+TGG 0.620072 1_4:-41287348 None:intergenic
TTTCCATAAACTAGTGATGG+TGG 0.621844 1_4:-41287452 None:intergenic
GAACTACCATAGAAGTGTGA+TGG 0.625518 1_4:-41287193 None:intergenic
TATCGAACATCACTAAGACC+AGG 0.629276 1_4:-41289280 None:intergenic
GTTTGCAGTCGTGTGTGAAG+GGG 0.634927 1_4:-41287249 None:intergenic
TATTAATCTAGAAAGAGTCA+TGG 0.641211 1_4:+41288957 Msa0163290:intron
AGGCCAATGGACTCATGATG+AGG 0.644622 1_4:+41287580 Msa0163290:CDS
TTCTATAGATCACTAACATG+AGG 0.655218 1_4:-41289460 None:intergenic
TAACGAACATCCTCTTAATG+GGG 0.668773 1_4:+41287166 Msa0163290:CDS
GGTGATGATGGAATGGCAAG+TGG 0.670002 1_4:+41289388 Msa0163290:CDS
GCAGGTGTAAGAGTAGAACT+TGG 0.695950 1_4:-41287098 None:intergenic
TGGTTGCAAGAGAACCAGTG+CGG 0.712881 1_4:-41287078 None:intergenic
GTTGCAAGAGAACCAGTGCG+GGG 0.724060 1_4:-41287076 None:intergenic
ACTTCAGTGGAAGAACCTGG+TGG 0.783052 1_4:+41289343 Msa0163290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACACTTTTTTTTTTATAAA+TGG - chr1_4:41288382-41288401 None:intergenic 10.0%
!!! ATCATTTGTATTTTTTAAAA+AGG - chr1_4:41288503-41288522 None:intergenic 10.0%
!!! CTATTTTAGATAAAAAAAAA+AGG + chr1_4:41288786-41288805 Msa0163290:intron 10.0%
!!! AACACTTTTTTTTTTATAAA+TGG - chr1_4:41288382-41288401 None:intergenic 10.0%
!!! ATCATTTGTATTTTTTAAAA+AGG - chr1_4:41288503-41288522 None:intergenic 10.0%
!!! CTATTTTAGATAAAAAAAAA+AGG + chr1_4:41288786-41288805 Msa0163290:intron 10.0%
!!! ATATTGAAAGAAATTTTGTT+TGG - chr1_4:41287396-41287415 None:intergenic 15.0%
!! AAACAAAATTTCTTTCAATA+TGG + chr1_4:41287395-41287414 Msa0163290:CDS 15.0%
!!! CATTACTATAAAATATTTTC+AGG + chr1_4:41287637-41287656 Msa0163290:intron 15.0%
!! AATTAACCAAAATAAGAAAT+CGG - chr1_4:41288662-41288681 None:intergenic 15.0%
!! AACATATATGATAATATGAA+AGG - chr1_4:41288734-41288753 None:intergenic 15.0%
!!! ATATTGAAAGAAATTTTGTT+TGG - chr1_4:41287396-41287415 None:intergenic 15.0%
!! AAACAAAATTTCTTTCAATA+TGG + chr1_4:41287395-41287414 Msa0163290:CDS 15.0%
!!! CATTACTATAAAATATTTTC+AGG + chr1_4:41287637-41287656 Msa0163290:intron 15.0%
!! AATTAACCAAAATAAGAAAT+CGG - chr1_4:41288662-41288681 None:intergenic 15.0%
!! AACATATATGATAATATGAA+AGG - chr1_4:41288734-41288753 None:intergenic 15.0%
!! AAAAAATCAGTGTAATTAGA+TGG - chr1_4:41287125-41287144 None:intergenic 20.0%
!! AAAGAATCCAATATAAGAAA+AGG + chr1_4:41287560-41287579 Msa0163290:CDS 20.0%
!!! TAAAATATTTTCAGGTTCTT+AGG + chr1_4:41287645-41287664 Msa0163290:intron 20.0%
!!! AAAATATTTTCAGGTTCTTA+GGG + chr1_4:41287646-41287665 Msa0163290:intron 20.0%
!! TTATGATACATGTTCTTAAA+TGG - chr1_4:41288153-41288172 None:intergenic 20.0%
!!! TTTGGTTAATTTTGAACAAA+TGG + chr1_4:41288671-41288690 Msa0163290:intron 20.0%
!! AAAAAATCAGTGTAATTAGA+TGG - chr1_4:41287125-41287144 None:intergenic 20.0%
!! AAAGAATCCAATATAAGAAA+AGG + chr1_4:41287560-41287579 Msa0163290:CDS 20.0%
!!! TAAAATATTTTCAGGTTCTT+AGG + chr1_4:41287645-41287664 Msa0163290:intron 20.0%
!!! AAAATATTTTCAGGTTCTTA+GGG + chr1_4:41287646-41287665 Msa0163290:intron 20.0%
!! TTATGATACATGTTCTTAAA+TGG - chr1_4:41288153-41288172 None:intergenic 20.0%
!!! TTTGGTTAATTTTGAACAAA+TGG + chr1_4:41288671-41288690 Msa0163290:intron 20.0%
!! CGTTATATTGATTGGATTTA+TGG - chr1_4:41287151-41287170 None:intergenic 25.0%
!!! GGATTTGTTATATACTCTAT+TGG + chr1_4:41287670-41287689 Msa0163290:intron 25.0%
!! TCTTTATCTTCAATCCTTTT+AGG + chr1_4:41287939-41287958 Msa0163290:intron 25.0%
! TATAAATTTATAACGACGTG+CGG + chr1_4:41288104-41288123 Msa0163290:intron 25.0%
! AAAATCACTGAAGATACTTA+TGG - chr1_4:41288587-41288606 None:intergenic 25.0%
!!! CTATTTGTTTTTGCAAATGA+GGG - chr1_4:41288829-41288848 None:intergenic 25.0%
!!! TCTATTTGTTTTTGCAAATG+AGG - chr1_4:41288830-41288849 None:intergenic 25.0%
! AGATTTCAATTTCACTAATC+TGG - chr1_4:41288889-41288908 None:intergenic 25.0%
! TAATCCAGACATATATTGTT+TGG + chr1_4:41288934-41288953 Msa0163290:intron 25.0%
! AATACCAAACAATATATGTC+TGG - chr1_4:41288941-41288960 None:intergenic 25.0%
! TATTAATCTAGAAAGAGTCA+TGG + chr1_4:41288957-41288976 Msa0163290:intron 25.0%
!!! ATTATGTTGGTGGAATTTTT+TGG - chr1_4:41289217-41289236 None:intergenic 25.0%
! ATACTCAATGTTCATTATGT+TGG - chr1_4:41289230-41289249 None:intergenic 25.0%
!! CGTTATATTGATTGGATTTA+TGG - chr1_4:41287151-41287170 None:intergenic 25.0%
!!! GGATTTGTTATATACTCTAT+TGG + chr1_4:41287670-41287689 Msa0163290:intron 25.0%
!! TCTTTATCTTCAATCCTTTT+AGG + chr1_4:41287939-41287958 Msa0163290:intron 25.0%
! TATAAATTTATAACGACGTG+CGG + chr1_4:41288104-41288123 Msa0163290:intron 25.0%
! AAAATCACTGAAGATACTTA+TGG - chr1_4:41288587-41288606 None:intergenic 25.0%
!!! CTATTTGTTTTTGCAAATGA+GGG - chr1_4:41288829-41288848 None:intergenic 25.0%
!!! TCTATTTGTTTTTGCAAATG+AGG - chr1_4:41288830-41288849 None:intergenic 25.0%
! AGATTTCAATTTCACTAATC+TGG - chr1_4:41288889-41288908 None:intergenic 25.0%
! TAATCCAGACATATATTGTT+TGG + chr1_4:41288934-41288953 Msa0163290:intron 25.0%
! AATACCAAACAATATATGTC+TGG - chr1_4:41288941-41288960 None:intergenic 25.0%
! TATTAATCTAGAAAGAGTCA+TGG + chr1_4:41288957-41288976 Msa0163290:intron 25.0%
!!! ATTATGTTGGTGGAATTTTT+TGG - chr1_4:41289217-41289236 None:intergenic 25.0%
! ATACTCAATGTTCATTATGT+TGG - chr1_4:41289230-41289249 None:intergenic 25.0%
AGGATGTTCGTTATATTGAT+TGG - chr1_4:41287159-41287178 None:intergenic 30.0%
TATAACGAACATCCTCTTAA+TGG + chr1_4:41287164-41287183 Msa0163290:CDS 30.0%
ATAACGAACATCCTCTTAAT+GGG + chr1_4:41287165-41287184 Msa0163290:CDS 30.0%
GTTCATTGAAAATGGTTTGA+TGG - chr1_4:41287225-41287244 None:intergenic 30.0%
!! TTCGTTATAGTTTGGTGTAA+AGG - chr1_4:41287321-41287340 None:intergenic 30.0%
TACACCAAACTATAACGAAA+TGG + chr1_4:41287322-41287341 Msa0163290:CDS 30.0%
AAATTCCTATGTCTGTGTTA+AGG - chr1_4:41287364-41287383 None:intergenic 30.0%
! TAACACAGACATAGGAATTT+TGG + chr1_4:41287364-41287383 Msa0163290:CDS 30.0%
!! ACTCTATTGGTTCAATTTGA+TGG + chr1_4:41287683-41287702 Msa0163290:intron 30.0%
TAGGATTCTTGTCAAATTGT+TGG + chr1_4:41287806-41287825 Msa0163290:intron 30.0%
TCAAATTGTTGGACTATTCT+GGG + chr1_4:41287817-41287836 Msa0163290:CDS 30.0%
ACTATTCTGGGTTTAATAAC+TGG + chr1_4:41287829-41287848 Msa0163290:CDS 30.0%
CAGATTGCTAAGTTTATGAA+TGG + chr1_4:41287855-41287874 Msa0163290:CDS 30.0%
GTAAGAGATAAAAGCCTAAA+AGG - chr1_4:41287956-41287975 None:intergenic 30.0%
! ATAGATATGCCATTTATCAC+TGG + chr1_4:41288521-41288540 Msa0163290:intron 30.0%
! TTTTGTTCTCCAGTGATAAA+TGG - chr1_4:41288533-41288552 None:intergenic 30.0%
AGATACTTATGGATAAAGCA+TGG - chr1_4:41288576-41288595 None:intergenic 30.0%
!!! TCCTTACCGATTTCTTATTT+TGG + chr1_4:41288653-41288672 Msa0163290:intron 30.0%
ACCAAAATAAGAAATCGGTA+AGG - chr1_4:41288657-41288676 None:intergenic 30.0%
CAACGAAATCACTAATTCTA+AGG + chr1_4:41289177-41289196 Msa0163290:CDS 30.0%
! TAATTCTAAGGATGTTCAGA+AGG + chr1_4:41289189-41289208 Msa0163290:CDS 30.0%
AATGTGACAATGATGTTGAA+TGG + chr1_4:41289367-41289386 Msa0163290:CDS 30.0%
AGGATGTTCGTTATATTGAT+TGG - chr1_4:41287159-41287178 None:intergenic 30.0%
TATAACGAACATCCTCTTAA+TGG + chr1_4:41287164-41287183 Msa0163290:CDS 30.0%
ATAACGAACATCCTCTTAAT+GGG + chr1_4:41287165-41287184 Msa0163290:CDS 30.0%
GTTCATTGAAAATGGTTTGA+TGG - chr1_4:41287225-41287244 None:intergenic 30.0%
!! TTCGTTATAGTTTGGTGTAA+AGG - chr1_4:41287321-41287340 None:intergenic 30.0%
TACACCAAACTATAACGAAA+TGG + chr1_4:41287322-41287341 Msa0163290:CDS 30.0%
AAATTCCTATGTCTGTGTTA+AGG - chr1_4:41287364-41287383 None:intergenic 30.0%
! TAACACAGACATAGGAATTT+TGG + chr1_4:41287364-41287383 Msa0163290:CDS 30.0%
!! ACTCTATTGGTTCAATTTGA+TGG + chr1_4:41287683-41287702 Msa0163290:intron 30.0%
TAGGATTCTTGTCAAATTGT+TGG + chr1_4:41287806-41287825 Msa0163290:intron 30.0%
TCAAATTGTTGGACTATTCT+GGG + chr1_4:41287817-41287836 Msa0163290:CDS 30.0%
ACTATTCTGGGTTTAATAAC+TGG + chr1_4:41287829-41287848 Msa0163290:CDS 30.0%
CAGATTGCTAAGTTTATGAA+TGG + chr1_4:41287855-41287874 Msa0163290:CDS 30.0%
GTAAGAGATAAAAGCCTAAA+AGG - chr1_4:41287956-41287975 None:intergenic 30.0%
! ATAGATATGCCATTTATCAC+TGG + chr1_4:41288521-41288540 Msa0163290:intron 30.0%
! TTTTGTTCTCCAGTGATAAA+TGG - chr1_4:41288533-41288552 None:intergenic 30.0%
AGATACTTATGGATAAAGCA+TGG - chr1_4:41288576-41288595 None:intergenic 30.0%
!!! TCCTTACCGATTTCTTATTT+TGG + chr1_4:41288653-41288672 Msa0163290:intron 30.0%
ACCAAAATAAGAAATCGGTA+AGG - chr1_4:41288657-41288676 None:intergenic 30.0%
CAACGAAATCACTAATTCTA+AGG + chr1_4:41289177-41289196 Msa0163290:CDS 30.0%
! TAATTCTAAGGATGTTCAGA+AGG + chr1_4:41289189-41289208 Msa0163290:CDS 30.0%
AATGTGACAATGATGTTGAA+TGG + chr1_4:41289367-41289386 Msa0163290:CDS 30.0%
TAACGAACATCCTCTTAATG+GGG + chr1_4:41287166-41287185 Msa0163290:CDS 35.0%
GAAAATGGTTTGATGGAAGA+AGG - chr1_4:41287218-41287237 None:intergenic 35.0%
ATCGATGAAAAATTCGCTCT+GGG - chr1_4:41287285-41287304 None:intergenic 35.0%
!! TAGTTTGGTGTAAAGGTCAT+TGG - chr1_4:41287314-41287333 None:intergenic 35.0%
GCTTCCATTTCGTTATAGTT+TGG - chr1_4:41287329-41287348 None:intergenic 35.0%
TTTCCATAAACTAGTGATGG+TGG - chr1_4:41287455-41287474 None:intergenic 35.0%
TGGTTTCCATAAACTAGTGA+TGG - chr1_4:41287458-41287477 None:intergenic 35.0%
TGAGAATGTTTCCTTGATCA+TGG - chr1_4:41287490-41287509 None:intergenic 35.0%
!!! CCATTGGCCTTTTCTTATAT+TGG - chr1_4:41287570-41287589 None:intergenic 35.0%
CCAATATAAGAAAAGGCCAA+TGG + chr1_4:41287567-41287586 Msa0163290:CDS 35.0%
!!! ATATTTTCAGGTTCTTAGGG+TGG + chr1_4:41287649-41287668 Msa0163290:intron 35.0%
GTCAAATTGTTGGACTATTC+TGG + chr1_4:41287816-41287835 Msa0163290:CDS 35.0%
AAGTTTATGAATGGCAGAAG+CGG + chr1_4:41287864-41287883 Msa0163290:CDS 35.0%
GATAAAGACACCTTAATGTC+CGG - chr1_4:41287927-41287946 None:intergenic 35.0%
GGATAAAGCATGGATACATA+TGG - chr1_4:41288566-41288585 None:intergenic 35.0%
! TGAAAGGAGAAGCGTAAAAA+CGG - chr1_4:41288718-41288737 None:intergenic 35.0%
CTCAATGTTCATTATGTTGG+TGG - chr1_4:41289227-41289246 None:intergenic 35.0%
CGATATGAAATTTCTGAGTG+TGG + chr1_4:41289298-41289317 Msa0163290:CDS 35.0%
! TGGTGTTAACTTTGAAGGTT+TGG + chr1_4:41289318-41289337 Msa0163290:CDS 35.0%
! ATGATGTTGAATGGTGATGA+TGG + chr1_4:41289376-41289395 Msa0163290:CDS 35.0%
TGAGATTGGATCGTATCAAA+TGG + chr1_4:41289429-41289448 Msa0163290:CDS 35.0%
TAACGAACATCCTCTTAATG+GGG + chr1_4:41287166-41287185 Msa0163290:CDS 35.0%
GAAAATGGTTTGATGGAAGA+AGG - chr1_4:41287218-41287237 None:intergenic 35.0%
ATCGATGAAAAATTCGCTCT+GGG - chr1_4:41287285-41287304 None:intergenic 35.0%
!! TAGTTTGGTGTAAAGGTCAT+TGG - chr1_4:41287314-41287333 None:intergenic 35.0%
GCTTCCATTTCGTTATAGTT+TGG - chr1_4:41287329-41287348 None:intergenic 35.0%
TTTCCATAAACTAGTGATGG+TGG - chr1_4:41287455-41287474 None:intergenic 35.0%
TGGTTTCCATAAACTAGTGA+TGG - chr1_4:41287458-41287477 None:intergenic 35.0%
TGAGAATGTTTCCTTGATCA+TGG - chr1_4:41287490-41287509 None:intergenic 35.0%
!!! CCATTGGCCTTTTCTTATAT+TGG - chr1_4:41287570-41287589 None:intergenic 35.0%
CCAATATAAGAAAAGGCCAA+TGG + chr1_4:41287567-41287586 Msa0163290:CDS 35.0%
!!! ATATTTTCAGGTTCTTAGGG+TGG + chr1_4:41287649-41287668 Msa0163290:intron 35.0%
GTCAAATTGTTGGACTATTC+TGG + chr1_4:41287816-41287835 Msa0163290:CDS 35.0%
AAGTTTATGAATGGCAGAAG+CGG + chr1_4:41287864-41287883 Msa0163290:CDS 35.0%
GATAAAGACACCTTAATGTC+CGG - chr1_4:41287927-41287946 None:intergenic 35.0%
GGATAAAGCATGGATACATA+TGG - chr1_4:41288566-41288585 None:intergenic 35.0%
! TGAAAGGAGAAGCGTAAAAA+CGG - chr1_4:41288718-41288737 None:intergenic 35.0%
CTCAATGTTCATTATGTTGG+TGG - chr1_4:41289227-41289246 None:intergenic 35.0%
CGATATGAAATTTCTGAGTG+TGG + chr1_4:41289298-41289317 Msa0163290:CDS 35.0%
! TGGTGTTAACTTTGAAGGTT+TGG + chr1_4:41289318-41289337 Msa0163290:CDS 35.0%
! ATGATGTTGAATGGTGATGA+TGG + chr1_4:41289376-41289395 Msa0163290:CDS 35.0%
TGAGATTGGATCGTATCAAA+TGG + chr1_4:41289429-41289448 Msa0163290:CDS 35.0%
TCAGTGTAATTAGATGGTGC+AGG - chr1_4:41287119-41287138 None:intergenic 40.0%
! GAACTACCATAGAAGTGTGA+TGG - chr1_4:41287196-41287215 None:intergenic 40.0%
! GGGGTTTGGTTCATTGAAAA+TGG - chr1_4:41287233-41287252 None:intergenic 40.0%
GATCGATGAAAAATTCGCTC+TGG - chr1_4:41287286-41287305 None:intergenic 40.0%
TTCCTATGTCTGTGTTAAGG+AGG - chr1_4:41287361-41287380 None:intergenic 40.0%
! CTACCACCATCACTAGTTTA+TGG + chr1_4:41287449-41287468 Msa0163290:CDS 40.0%
TTTCCTTGATCATGGTCTTC+TGG - chr1_4:41287482-41287501 None:intergenic 40.0%
! AATGGACTCATGATGAGGAT+GGG + chr1_4:41287585-41287604 Msa0163290:CDS 40.0%
! GAAAGGAGAAGCGTAAAAAC+GGG - chr1_4:41288717-41288736 None:intergenic 40.0%
ATCGAAGCTCACAAGATAGT+TGG + chr1_4:41289004-41289023 Msa0163290:CDS 40.0%
TCGAAGCTCACAAGATAGTT+GGG + chr1_4:41289005-41289024 Msa0163290:CDS 40.0%
GAAATTGCAAAGAGACTTCC+TGG + chr1_4:41289040-41289059 Msa0163290:CDS 40.0%
TTCCTTTCGAACTATTTCGC+CGG - chr1_4:41289138-41289157 None:intergenic 40.0%
ATCGAACATCACTAAGACCA+GGG - chr1_4:41289282-41289301 None:intergenic 40.0%
TATCGAACATCACTAAGACC+AGG - chr1_4:41289283-41289302 None:intergenic 40.0%
! GAGTGTGGTGTTAACTTTGA+AGG + chr1_4:41289313-41289332 Msa0163290:CDS 40.0%
! TGAAGGTTTGGTTACTTCAG+TGG + chr1_4:41289330-41289349 Msa0163290:CDS 40.0%
!! GTTGAATGGTGATGATGGAA+TGG + chr1_4:41289381-41289400 Msa0163290:CDS 40.0%
TCAGTGTAATTAGATGGTGC+AGG - chr1_4:41287119-41287138 None:intergenic 40.0%
! GAACTACCATAGAAGTGTGA+TGG - chr1_4:41287196-41287215 None:intergenic 40.0%
! GGGGTTTGGTTCATTGAAAA+TGG - chr1_4:41287233-41287252 None:intergenic 40.0%
GATCGATGAAAAATTCGCTC+TGG - chr1_4:41287286-41287305 None:intergenic 40.0%
TTCCTATGTCTGTGTTAAGG+AGG - chr1_4:41287361-41287380 None:intergenic 40.0%
! CTACCACCATCACTAGTTTA+TGG + chr1_4:41287449-41287468 Msa0163290:CDS 40.0%
TTTCCTTGATCATGGTCTTC+TGG - chr1_4:41287482-41287501 None:intergenic 40.0%
! AATGGACTCATGATGAGGAT+GGG + chr1_4:41287585-41287604 Msa0163290:CDS 40.0%
! GAAAGGAGAAGCGTAAAAAC+GGG - chr1_4:41288717-41288736 None:intergenic 40.0%
ATCGAAGCTCACAAGATAGT+TGG + chr1_4:41289004-41289023 Msa0163290:CDS 40.0%
TCGAAGCTCACAAGATAGTT+GGG + chr1_4:41289005-41289024 Msa0163290:CDS 40.0%
GAAATTGCAAAGAGACTTCC+TGG + chr1_4:41289040-41289059 Msa0163290:CDS 40.0%
TTCCTTTCGAACTATTTCGC+CGG - chr1_4:41289138-41289157 None:intergenic 40.0%
ATCGAACATCACTAAGACCA+GGG - chr1_4:41289282-41289301 None:intergenic 40.0%
TATCGAACATCACTAAGACC+AGG - chr1_4:41289283-41289302 None:intergenic 40.0%
! GAGTGTGGTGTTAACTTTGA+AGG + chr1_4:41289313-41289332 Msa0163290:CDS 40.0%
! TGAAGGTTTGGTTACTTCAG+TGG + chr1_4:41289330-41289349 Msa0163290:CDS 40.0%
!! GTTGAATGGTGATGATGGAA+TGG + chr1_4:41289381-41289400 Msa0163290:CDS 40.0%
GCAGGTGTAAGAGTAGAACT+TGG - chr1_4:41287101-41287120 None:intergenic 45.0%
TGATGGTTCACCCCATTAAG+AGG - chr1_4:41287179-41287198 None:intergenic 45.0%
GGTGAACCATCACACTTCTA+TGG + chr1_4:41287187-41287206 Msa0163290:CDS 45.0%
TGTTTGCAGTCGTGTGTGAA+GGG - chr1_4:41287253-41287272 None:intergenic 45.0%
! AAATTCGCTCTGGGTTCCAT+TGG - chr1_4:41287276-41287295 None:intergenic 45.0%
TGTGTTAAGGAGGTCATGCA+TGG - chr1_4:41287351-41287370 None:intergenic 45.0%
GACCTCCTTAACACAGACAT+AGG + chr1_4:41287356-41287375 Msa0163290:CDS 45.0%
!! AACTAGTGATGGTGGTAGAG+AGG - chr1_4:41287447-41287466 None:intergenic 45.0%
CTTGATCATGGTCTTCTGGT+TGG - chr1_4:41287478-41287497 None:intergenic 45.0%
CAACCAGAAGACCATGATCA+AGG + chr1_4:41287476-41287495 Msa0163290:CDS 45.0%
TGACCAGATGCGACAAAAGA+AGG + chr1_4:41287511-41287530 Msa0163290:CDS 45.0%
! GAACCTTCTTTTGTCGCATC+TGG - chr1_4:41287517-41287536 None:intergenic 45.0%
CATCCTCATCATGAGTCCAT+TGG - chr1_4:41287586-41287605 None:intergenic 45.0%
! CAATGGACTCATGATGAGGA+TGG + chr1_4:41287584-41287603 Msa0163290:CDS 45.0%
ATGGCATAACCATCTTCGAC+CGG + chr1_4:41287905-41287924 Msa0163290:CDS 45.0%
GAAAGAGTCATGGAGTGAAG+AGG + chr1_4:41288967-41288986 Msa0163290:intron 45.0%
TCGGCTTCTTTGTAGCATTC+AGG - chr1_4:41289114-41289133 None:intergenic 45.0%
ATGCTACAAAGAAGCCGAAC+CGG + chr1_4:41289116-41289135 Msa0163290:CDS 45.0%
! TTCGAACTATTTCGCCGGTT+CGG - chr1_4:41289133-41289152 None:intergenic 45.0%
AACCGGCGAAATAGTTCGAA+AGG + chr1_4:41289133-41289152 Msa0163290:CDS 45.0%
GACAATACCTATACCAACCC+TGG + chr1_4:41289262-41289281 Msa0163290:CDS 45.0%
!! ACTAAGACCAGGGTTGGTAT+AGG - chr1_4:41289272-41289291 None:intergenic 45.0%
AACATCACTAAGACCAGGGT+TGG - chr1_4:41289278-41289297 None:intergenic 45.0%
GTTACTTCAGTGGAAGAACC+TGG + chr1_4:41289340-41289359 Msa0163290:CDS 45.0%
ATCATTGTCACATTGCCACC+AGG - chr1_4:41289361-41289380 None:intergenic 45.0%
GGCACAATGAGTCATGAGAT+TGG + chr1_4:41289415-41289434 Msa0163290:CDS 45.0%
GCAGGTGTAAGAGTAGAACT+TGG - chr1_4:41287101-41287120 None:intergenic 45.0%
TGATGGTTCACCCCATTAAG+AGG - chr1_4:41287179-41287198 None:intergenic 45.0%
GGTGAACCATCACACTTCTA+TGG + chr1_4:41287187-41287206 Msa0163290:CDS 45.0%
TGTTTGCAGTCGTGTGTGAA+GGG - chr1_4:41287253-41287272 None:intergenic 45.0%
! AAATTCGCTCTGGGTTCCAT+TGG - chr1_4:41287276-41287295 None:intergenic 45.0%
TGTGTTAAGGAGGTCATGCA+TGG - chr1_4:41287351-41287370 None:intergenic 45.0%
GACCTCCTTAACACAGACAT+AGG + chr1_4:41287356-41287375 Msa0163290:CDS 45.0%
!! AACTAGTGATGGTGGTAGAG+AGG - chr1_4:41287447-41287466 None:intergenic 45.0%
CTTGATCATGGTCTTCTGGT+TGG - chr1_4:41287478-41287497 None:intergenic 45.0%
CAACCAGAAGACCATGATCA+AGG + chr1_4:41287476-41287495 Msa0163290:CDS 45.0%
TGACCAGATGCGACAAAAGA+AGG + chr1_4:41287511-41287530 Msa0163290:CDS 45.0%
! GAACCTTCTTTTGTCGCATC+TGG - chr1_4:41287517-41287536 None:intergenic 45.0%
CATCCTCATCATGAGTCCAT+TGG - chr1_4:41287586-41287605 None:intergenic 45.0%
! CAATGGACTCATGATGAGGA+TGG + chr1_4:41287584-41287603 Msa0163290:CDS 45.0%
ATGGCATAACCATCTTCGAC+CGG + chr1_4:41287905-41287924 Msa0163290:CDS 45.0%
GAAAGAGTCATGGAGTGAAG+AGG + chr1_4:41288967-41288986 Msa0163290:intron 45.0%
TCGGCTTCTTTGTAGCATTC+AGG - chr1_4:41289114-41289133 None:intergenic 45.0%
ATGCTACAAAGAAGCCGAAC+CGG + chr1_4:41289116-41289135 Msa0163290:CDS 45.0%
! TTCGAACTATTTCGCCGGTT+CGG - chr1_4:41289133-41289152 None:intergenic 45.0%
AACCGGCGAAATAGTTCGAA+AGG + chr1_4:41289133-41289152 Msa0163290:CDS 45.0%
GACAATACCTATACCAACCC+TGG + chr1_4:41289262-41289281 Msa0163290:CDS 45.0%
!! ACTAAGACCAGGGTTGGTAT+AGG - chr1_4:41289272-41289291 None:intergenic 45.0%
AACATCACTAAGACCAGGGT+TGG - chr1_4:41289278-41289297 None:intergenic 45.0%
GTTACTTCAGTGGAAGAACC+TGG + chr1_4:41289340-41289359 Msa0163290:CDS 45.0%
ATCATTGTCACATTGCCACC+AGG - chr1_4:41289361-41289380 None:intergenic 45.0%
GGCACAATGAGTCATGAGAT+TGG + chr1_4:41289415-41289434 Msa0163290:CDS 45.0%
!!! AATAATTTTTTTATTTTTGT+AGG + chr1_4:41287787-41287806 Msa0163290:intron 5.0%
!!! TTTTTTTTTGAAAAAATATT+TGG + chr1_4:41288607-41288626 Msa0163290:intron 5.0%
!!! AATAATTTTTTTATTTTTGT+AGG + chr1_4:41287787-41287806 Msa0163290:intron 5.0%
!!! TTTTTTTTTGAAAAAATATT+TGG + chr1_4:41288607-41288626 Msa0163290:intron 5.0%
TGGTTGCAAGAGAACCAGTG+CGG - chr1_4:41287081-41287100 None:intergenic 50.0%
GTTTGCAGTCGTGTGTGAAG+GGG - chr1_4:41287252-41287271 None:intergenic 50.0%
GTGTTTGCAGTCGTGTGTGA+AGG - chr1_4:41287254-41287273 None:intergenic 50.0%
CACACGACTGCAAACACCAA+TGG + chr1_4:41287257-41287276 Msa0163290:CDS 50.0%
! AGGCCAATGGACTCATGATG+AGG + chr1_4:41287580-41287599 Msa0163290:CDS 50.0%
CAGAAGCGGAAAACAGTGCA+GGG + chr1_4:41287878-41287897 Msa0163290:CDS 50.0%
GAAAACAGTGCAGGGAGAGA+TGG + chr1_4:41287886-41287905 Msa0163290:CDS 50.0%
CCTTAATGTCCGGTCGAAGA+TGG - chr1_4:41287917-41287936 None:intergenic 50.0%
CCATCTTCGACCGGACATTA+AGG + chr1_4:41287914-41287933 Msa0163290:CDS 50.0%
AGAACTCCGTCAAGAACCGT+TGG + chr1_4:41289071-41289090 Msa0163290:CDS 50.0%
GGAGTTCCAACGGTTCTTGA+CGG - chr1_4:41289080-41289099 None:intergenic 50.0%
ACTTCAGTGGAAGAACCTGG+TGG + chr1_4:41289343-41289362 Msa0163290:CDS 50.0%
!! GGTGATGATGGAATGGCAAG+TGG + chr1_4:41289388-41289407 Msa0163290:CDS 50.0%
TGGTTGCAAGAGAACCAGTG+CGG - chr1_4:41287081-41287100 None:intergenic 50.0%
GTTTGCAGTCGTGTGTGAAG+GGG - chr1_4:41287252-41287271 None:intergenic 50.0%
GTGTTTGCAGTCGTGTGTGA+AGG - chr1_4:41287254-41287273 None:intergenic 50.0%
CACACGACTGCAAACACCAA+TGG + chr1_4:41287257-41287276 Msa0163290:CDS 50.0%
! AGGCCAATGGACTCATGATG+AGG + chr1_4:41287580-41287599 Msa0163290:CDS 50.0%
CAGAAGCGGAAAACAGTGCA+GGG + chr1_4:41287878-41287897 Msa0163290:CDS 50.0%
GAAAACAGTGCAGGGAGAGA+TGG + chr1_4:41287886-41287905 Msa0163290:CDS 50.0%
CCTTAATGTCCGGTCGAAGA+TGG - chr1_4:41287917-41287936 None:intergenic 50.0%
CCATCTTCGACCGGACATTA+AGG + chr1_4:41287914-41287933 Msa0163290:CDS 50.0%
AGAACTCCGTCAAGAACCGT+TGG + chr1_4:41289071-41289090 Msa0163290:CDS 50.0%
GGAGTTCCAACGGTTCTTGA+CGG - chr1_4:41289080-41289099 None:intergenic 50.0%
ACTTCAGTGGAAGAACCTGG+TGG + chr1_4:41289343-41289362 Msa0163290:CDS 50.0%
!! GGTGATGATGGAATGGCAAG+TGG + chr1_4:41289388-41289407 Msa0163290:CDS 50.0%
GTTGCAAGAGAACCAGTGCG+GGG - chr1_4:41287079-41287098 None:intergenic 55.0%
GGTTGCAAGAGAACCAGTGC+GGG - chr1_4:41287080-41287099 None:intergenic 55.0%
CAGTCGTGTGTGAAGGGGTT+TGG - chr1_4:41287247-41287266 None:intergenic 55.0%
GCAGAAGCGGAAAACAGTGC+AGG + chr1_4:41287877-41287896 Msa0163290:CDS 55.0%
ACGGAGTTCTCAGTACGTCC+AGG - chr1_4:41289061-41289080 None:intergenic 55.0%
TGCGCTTAGCGGAGTTCCAA+CGG - chr1_4:41289090-41289109 None:intergenic 55.0%
AGCATTCAGGCTGCGCTTAG+CGG - chr1_4:41289101-41289120 None:intergenic 55.0%
GATGGAATGGCAAGTGGCTC+TGG + chr1_4:41289394-41289413 Msa0163290:CDS 55.0%
GTTGCAAGAGAACCAGTGCG+GGG - chr1_4:41287079-41287098 None:intergenic 55.0%
GGTTGCAAGAGAACCAGTGC+GGG - chr1_4:41287080-41287099 None:intergenic 55.0%
CAGTCGTGTGTGAAGGGGTT+TGG - chr1_4:41287247-41287266 None:intergenic 55.0%
GCAGAAGCGGAAAACAGTGC+AGG + chr1_4:41287877-41287896 Msa0163290:CDS 55.0%
ACGGAGTTCTCAGTACGTCC+AGG - chr1_4:41289061-41289080 None:intergenic 55.0%
TGCGCTTAGCGGAGTTCCAA+CGG - chr1_4:41289090-41289109 None:intergenic 55.0%
AGCATTCAGGCTGCGCTTAG+CGG - chr1_4:41289101-41289120 None:intergenic 55.0%
GATGGAATGGCAAGTGGCTC+TGG + chr1_4:41289394-41289413 Msa0163290:CDS 55.0%
AGAACCAGTGCGGGGATCTC+TGG - chr1_4:41287071-41287090 None:intergenic 60.0%
AGAACCAGTGCGGGGATCTC+TGG - chr1_4:41287071-41287090 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41287065 41289477 41287065 ID=Msa0163290;Name=Msa0163290
chr1_4 mRNA 41287065 41289477 41287065 ID=Msa0163290-mRNA-1;Parent=Msa0163290;Name=Msa0163290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|0.66|3|0|393
chr1_4 exon 41287065 41287606 41287065 ID=Msa0163290-mRNA-1:exon:11841;Parent=Msa0163290-mRNA-1
chr1_4 exon 41287809 41287935 41287809 ID=Msa0163290-mRNA-1:exon:11842;Parent=Msa0163290-mRNA-1
chr1_4 exon 41288968 41289477 41288968 ID=Msa0163290-mRNA-1:exon:11843;Parent=Msa0163290-mRNA-1
chr1_4 CDS 41287065 41287606 41287065 ID=Msa0163290-mRNA-1:cds;Parent=Msa0163290-mRNA-1
chr1_4 CDS 41287809 41287935 41287809 ID=Msa0163290-mRNA-1:cds;Parent=Msa0163290-mRNA-1
chr1_4 CDS 41288968 41289477 41288968 ID=Msa0163290-mRNA-1:cds;Parent=Msa0163290-mRNA-1
Gene Sequence

>Msa0163290

AAACCAGAGATCCCCGCACTGGTTCTCTTGCAACCAAGTTCTACTCTTACACCTGCACCATCTAATTACACTGATTTTTTGTACCATAAATCCAATCAATATAACGAACATCCTCTTAATGGGGTGAACCATCACACTTCTATGGTAGTTCCTTCTTCCATCAAACCATTTTCAATGAACCAAACCCCTTCACACACGACTGCAAACACCAATGGAACCCAGAGCGAATTTTTCATCGATCAAAATCCAATGACCTTTACACCAAACTATAACGAAATGGAAGCCATGCATGACCTCCTTAACACAGACATAGGAATTTTGGATTTGTCCAAACAAAATTTCTTTCAATATGGTGAAACTTTACAATCTCGAGTAATTTCCTCTCTACCACCATCACTAGTTTATGGAAACCAACCAGAAGACCATGATCAAGGAAACATTCTCATTGACCAGATGCGACAAAAGAAGGTTCACAAAGACAAAGAAATTCAACAAAAAGAATCCAATATAAGAAAAGGCCAATGGACTCATGATGAGGATGGGATTCTTGTCAAATTGTTGGACTATTCTGGGTTTAATAACTGGTCTCAGATTGCTAAGTTTATGAATGGCAGAAGCGGAAAACAGTGCAGGGAGAGATGGCATAACCATCTTCGACCGGACATTAAGAAAGAGTCATGGAGTGAAGAGGAAGATAGAATATTGATCGAAGCTCACAAGATAGTTGGGAACAAGTTTGCTGAAATTGCAAAGAGACTTCCTGGACGTACTGAGAACTCCGTCAAGAACCGTTGGAACTCCGCTAAGCGCAGCCTGAATGCTACAAAGAAGCCGAACCGGCGAAATAGTTCGAAAGGAACACTACTTCATAAATACATCAACGAAATCACTAATTCTAAGGATGTTCAGAAGGTGCCAAAAAATTCCACCAACATAATGAACATTGAGTATCAGACAAATTTCGACAATACCTATACCAACCCTGGTCTTAGTGATGTTCGATATGAAATTTCTGAGTGTGGTGTTAACTTTGAAGGTTTGGTTACTTCAGTGGAAGAACCTGGTGGCAATGTGACAATGATGTTGAATGGTGATGATGGAATGGCAAGTGGCTCTGGCACAATGAGTCATGAGATTGGATCGTATCAAATGGAGTTTTTTCCTCATGTTAGTGATCTA
Protein sequence

>Msa0163290

KPEIPALVLLQPSSTLTPAPSNYTDFLYHKSNQYNEHPLNGVNHHTSMVVPSSIKPFSMNQTPSHTTANTNGTQSEFFIDQNPMTFTPNYNEMEAMHDLLNTDIGILDLSKQNFFQYGETLQSRVISSLPPSLVYGNQPEDHDQGNILIDQMRQKKVHKDKEIQQKESNIRKGQWTHDEDGILVKLLDYSGFNNWSQIAKFMNGRSGKQCRERWHNHLRPDIKKESWSEEEDRILIEAHKIVGNKFAEIAKRLPGRTENSVKNRWNSAKRSLNATKKPNRRNSSKGTLLHKYINEITNSKDVQKVPKNSTNIMNIEYQTNFDNTYTNPGLSDVRYEISECGVNFEGLVTSVEEPGGNVTMMLNGDDGMASGSGTMSHEIGSYQMEFFPHVSDL