AlfalfaGEDB | Msa0163800

M. sativa cultivar zhongmu-4 / Msa0163800

KEGG: -
GO: GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163800	KEH42071.1	95.192	312	12	3	1	311	178	487	0.0	601

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163800	sp\|Q9SA82\|BH052_ARATH	44.118	170	93	1	135	304	95	262	9.05e-33	125

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163800	A0A072VKB3	95.192	312	12	3	1	311	178	487	0.0	601

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TFs/TRs:

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Gene ID	Type	Classification
Msa0163800	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163800	MtrunA17_Chr1g0179061	96.266	241	7	2	1	240	1	240	1.50e-170	473
Msa0163800	MtrunA17_Chr2g0311101	81.424	323	23	11	1	311	13	310	6.10e-160	448
Msa0163800	MtrunA17_Chr8g0384141	58.491	53	22	0	181	233	125	177	1.90e-13	69.3
Msa0163800	MtrunA17_Chr3g0134001	58.491	53	22	0	181	233	182	234	1.24e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163800	AT1G30670.1	44.118	170	93	1	135	304	95	262	9.20e-34	125
Msa0163800	AT2G34820.1	41.315	213	116	3	97	304	81	289	3.32e-29	113
Msa0163800	AT3G21330.1	60.377	53	21	0	181	233	280	332	2.10e-13	70.5
Msa0163800	AT5G01305.1	50.000	58	29	0	181	238	48	105	1.19e-12	65.5
Msa0163800	AT4G00120.1	52.830	53	25	0	181	233	123	175	6.59e-12	63.9

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Find 49 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAACTATTCTTGCTT+TGG	0.325467	1_4:+42140846	None:intergenic
AAGGGTCTGAAACAGCTTGC+TGG	0.388228	1_4:-42140888	Msa0163800:CDS
AAGTTGTTGGTAGTTTGAAT+AGG	0.402079	1_4:+42142848	None:intergenic
AAGTTTCTTCAAGCTCAAGT+TGG	0.567049	1_4:-42142230	Msa0163800:CDS
AATAGTTAGAGGGAAAATGG+TGG	0.625963	1_4:+42142774	None:intergenic
AATGTGGTGACAAACTCTTT+TGG	0.390869	1_4:+42140951	None:intergenic
ACAAGTAGTTGATCTTGACA+AGG	0.633389	1_4:+42142674	None:intergenic
ACGCCAAAAGCTATGCTACG+AGG	0.715032	1_4:-42142555	Msa0163800:CDS
ACTGAGAAGACACAAGAGCT+TGG	0.499993	1_4:-42142320	Msa0163800:CDS
ACTTATGGAAACATTTAGCA+AGG	0.569731	1_4:-42142198	Msa0163800:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTGATTTCTAAGTTGT+TGG	+	chr1_4:42140918-42140937	None:intergenic	30.0%
TCAAATAGTTAGAGGGAAAA+TGG	+	chr1_4:42140982-42141001	None:intergenic	30.0%
ACTTATGGAAACATTTAGCA+AGG	-	chr1_4:42141552-42141571	Msa0163800:intron	30.0%
TTATTAGAGCTCATAGTTGA+AGG	-	chr1_4:42141614-42141633	Msa0163800:intron	30.0%
ACTCAAATGATTACAAGCAA+AGG	+	chr1_4:42141816-42141835	None:intergenic	30.0%
CTATGTAACTGTTTAACACA+AGG	-	chr1_4:42142251-42142270	Msa0163800:CDS	30.0%
TACAGTTTCTCTTGAACAAA+TGG	+	chr1_4:42142757-42142776	None:intergenic	30.0%
ATCAAAACCTACCATTCTTA+AGG	-	chr1_4:42142843-42142862	Msa0163800:CDS	30.0%
TCAAAACCTACCATTCTTAA+GGG	-	chr1_4:42142844-42142863	Msa0163800:CDS	30.0%
AGTAGTGATTTCTAAGTTGT+TGG	+	chr1_4:42140918-42140937	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	42140854	42142918	42140854	ID=Msa0163800;Name=Msa0163800
chr1_4	mRNA	42140854	42142918	42140854	ID=Msa0163800-mRNA-1;Parent=Msa0163800;Name=Msa0163800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|311
chr1_4	exon	42142199	42142918	42142199	ID=Msa0163800-mRNA-1:exon:12217;Parent=Msa0163800-mRNA-1
chr1_4	exon	42140854	42141069	42140854	ID=Msa0163800-mRNA-1:exon:12216;Parent=Msa0163800-mRNA-1
chr1_4	CDS	42142199	42142918	42142199	ID=Msa0163800-mRNA-1:cds;Parent=Msa0163800-mRNA-1
chr1_4	CDS	42140854	42141069	42140854	ID=Msa0163800-mRNA-1:cds;Parent=Msa0163800-mRNA-1

Gene Sequence

>Msa0163800

ATGGGAGCACTTAGCACATACTTCAACTATAATTGTTACCCTTATCAACCTATTCAAACTACCAACAACTTAGAAATCACTACTTTTCAACATCATGAACAAGAACAATTTGTGCAACAAAACCACCATTTTCCCTCTAACTATTTGAATGAAACTTCTCTTTTAGATGAAAGCTTCATTTTTCAAACTCCTTGTTTTTACTCAAATGAAACTTACCCTAACCCTTGTCAAGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGGCTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCACCAATTACCTTACATGTCCAAAACGCCAAAAGCTATGCTACGAGGAGAAAAGAGAGGAACCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTTTTGCTTCCTTTGAGGCAGAACCCTTTGCTGCTTCAAAAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGCTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCGAGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAATTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACAAAAACTACTTCTTTCTCCATTTGTTCAAGAGAAACTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTGAGCAATCATAATAATGTTCAATCAAAACCTACCATTCTTAAGGGTCTGAAACAGCTTGCTGGGACTGAGATTGAGAAGAAACCAAAGCAAGAATAG

Protein sequence

>Msa0163800

MGALSTYFNYNCYPYQPIQTTNNLEITTFQHHEQEQFVQQNHHFPSNYLNETSLLDESFIFQTPCFYSNETYPNPCQDQLLVDSTFSSQNDGFVSMNEIFPNEEDFTNYLTCPKRQKLCYEEKREEPQQELLNSTNFFVDEFMTNPNPFASFEAEPFAASKKIVDVVQCEKKVAERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFSKEEKEPPPSEDLQKLLLSPFVQEKLYSEEKCFVPKEFVTTLSNHNNVQSKPTILKGLKQLAGTEIEKKPKQE*