AlfalfaGEDB | Msa0163890

M. sativa cultivar zhongmu-4 / Msa0163890

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163890	XP_013468040.1	97.919	769	14	1	1	767	91	859	0.0	1543

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163890	sp\|Q9LFA2\|KIPK1_ARATH	55.569	844	282	25	4	767	104	934	0.0	802

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163890	A0A072VJS9	97.919	769	14	1	1	767	91	859	0.0	1543

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163890	MtrunA17_Chr1g0179101	97.919	769	14	1	1	767	91	859	0.0	1543
Msa0163890	MtrunA17_Chr7g0266031	72.693	791	185	12	1	767	93	876	0.0	1077
Msa0163890	MtrunA17_Chr2g0290691	64.399	441	150	6	302	735	127	567	0.0	587
Msa0163890	MtrunA17_Chr8g0335351	58.386	471	169	8	277	728	258	720	0.0	550
Msa0163890	MtrunA17_Chr7g0250631	59.023	471	172	9	310	767	299	761	0.0	550
Msa0163890	MtrunA17_Chr7g0227331	67.363	383	119	3	353	729	207	589	0.0	545
Msa0163890	MtrunA17_Chr6g0449401	58.225	462	148	5	309	729	193	650	0.0	536
Msa0163890	MtrunA17_Chr2g0309421	55.605	446	180	6	334	767	132	571	5.67e-165	488
Msa0163890	MtrunA17_Chr8g0356291	58.015	393	154	7	353	739	101	488	6.02e-153	456
Msa0163890	MtrunA17_Chr4g0063311	53.061	392	169	4	353	729	66	457	1.08e-139	421

Showing 1 to 10 of 111 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163890	AT3G52890.2	55.569	844	282	25	4	767	104	934	0.0	802
Msa0163890	AT3G52890.4	55.569	844	282	25	4	767	104	934	0.0	802
Msa0163890	AT3G52890.1	55.569	844	282	25	4	767	104	934	0.0	802
Msa0163890	AT3G52890.3	55.569	844	282	25	4	767	104	934	0.0	802
Msa0163890	AT2G36350.1	52.558	860	298	21	3	767	105	949	0.0	757
Msa0163890	AT5G03640.2	70.742	458	105	10	329	767	479	926	0.0	659
Msa0163890	AT5G03640.2	30.986	284	136	11	6	281	106	337	4.77e-12	70.1
Msa0163890	AT5G03640.1	70.742	458	105	10	329	767	479	926	0.0	659
Msa0163890	AT5G03640.1	30.986	284	136	11	6	281	106	337	4.77e-12	70.1
Msa0163890	AT5G47750.1	61.345	476	173	7	302	767	112	586	0.0	587

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Find 187 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACATCCGTTCTTCGA+GGG	0.549529	1_4:-42301516	Msa0163890:CDS
AAACTGACAAATGGGCTATC+AGG	0.299972	1_4:+42301621	None:intergenic
AAACTTGGTTGTGGAGACAT+TGG	0.554545	1_4:-42303543	Msa0163890:CDS
AAAGAGCCTGAAAACCGATT+GGG	0.543386	1_4:-42301564	Msa0163890:CDS
AAATCTGTCATGTCTTGTCA+TGG	0.562494	1_4:-42303346	Msa0163890:CDS
AAATGTGCTTTATAAGGTGT+AGG	0.608095	1_4:-42301203	Msa0163890:three_prime_UTR
AACAACATCCGTTCTTCGAG+GGG	0.572629	1_4:-42301515	Msa0163890:CDS
AACATTCTTGTTCGAGAAGA+CGG	0.493896	1_4:-42302107	Msa0163890:CDS
AACCGATTGGGTACAGAGAA+AGG	0.450567	1_4:-42301552	Msa0163890:CDS
AACTCGAATTCACAAAGGTC+TGG	0.477570	1_4:+42301450	None:intergenic

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTAAAAAAGCCAATGACAA+TGG	-	chr1_4:42301171-42301190	Msa0163890:three_prime_UTR	30.0%
AAGAGACCTATGTATATCTA+AGG	-	chr1_4:42301252-42301271	Msa0163890:three_prime_UTR	30.0%
ATGAAAAGGTTATCAAAGTC+AGG	-	chr1_4:42301292-42301311	Msa0163890:three_prime_UTR	30.0%
GATACAGACATTGTACAATT+CGG	-	chr1_4:42301345-42301364	Msa0163890:exon	30.0%
GAATGTTCATCAAGTAAAGT+TGG	-	chr1_4:42301589-42301608	Msa0163890:CDS	30.0%
ATGTTCATCAAGTAAAGTTG+GGG	-	chr1_4:42301591-42301610	Msa0163890:CDS	30.0%
ATCATTAGAACCCATTCAAA+TGG	-	chr1_4:42301624-42301643	Msa0163890:CDS	30.0%
GATTCTTCCCCTAAAAAATT+AGG	-	chr1_4:42301718-42301737	Msa0163890:CDS	30.0%
TCCTCATCTACATCAATAAA+TGG	-	chr1_4:42301784-42301803	Msa0163890:CDS	30.0%
TTATTTGCTTCATTTGACTG+AGG	+	chr1_4:42301925-42301944	None:intergenic	30.0%

Showing 1 to 10 of 301 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	42301062	42304839	42301062	ID=Msa0163890;Name=Msa0163890
chr1_4	mRNA	42301062	42304839	42301062	ID=Msa0163890-mRNA-1;Parent=Msa0163890;Name=Msa0163890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=122\|1\|1\|1\|1\|1\|2\|291\|767
chr1_4	exon	42301062	42302208	42301062	ID=Msa0163890-mRNA-1:exon:12299;Parent=Msa0163890-mRNA-1
chr1_4	exon	42303270	42304839	42303270	ID=Msa0163890-mRNA-1:exon:12298;Parent=Msa0163890-mRNA-1
chr1_4	five_prime_UTR	42304718	42304839	42304718	ID=Msa0163890-mRNA-1:five_prime_utr;Parent=Msa0163890-mRNA-1
chr1_4	CDS	42303270	42304717	42303270	ID=Msa0163890-mRNA-1:cds;Parent=Msa0163890-mRNA-1
chr1_4	CDS	42301353	42302208	42301353	ID=Msa0163890-mRNA-1:cds;Parent=Msa0163890-mRNA-1
chr1_4	three_prime_UTR	42301062	42301352	42301062	ID=Msa0163890-mRNA-1:three_prime_utr;Parent=Msa0163890-mRNA-1

Gene Sequence

>Msa0163890

ATGACAATGGGTGTACCTCGATCCCCACGAGTTGGGATTTCTGAGCCGGTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCGGAAATGGCTGCTATGAAAAGGTTATCAAAGTCAGGAGCTTCTCCAAGAATATCAGAGGCCGGGAAGATACAGACATTGTACAATTCGGTTGTCACTGATGCTAGGAGATCAGGGCCTTCTAACGTTGACAGCAGTAAAAGGAGTTCAACTGAAATACCTCCGGTGCTGGAAGAAAGCAAGTCGCTTGGCTTGAATAAAGAATCACAGTCTCTTCAAACTTCCAAAAGTGTATTGAGCCAAAATGTTCAGTCTTCCGAAATTGCAGTTGCAGAAAATGAAACAGGGGCTTCATTGATGCGAAGTGATTTGGAATGTTCATCAAGTAAAGTTGGGGTTTCATCCCAATCATTAGAACCCATTCAAATGGAAAAACAAATGTCTGCTTCTTCTCCACCTTGTTGTAACACCAATGGAAGTAAAGTAGAGTTGCCTGAAAAAGATTCTTCCCCTAAAAAATTAGGAAATAAAGCATCTACACGGAAAGGTATGTTGCAAACAACATCTTCCTCATCTACATCAATAAATGGCAATAGAGTGTGTAAACTTTCGCGCCACAGCCCCCGAGCAGTAAAATCGATCATAAAAAACAAGAGTTTGGGTAAGAAGAAACCAAAGCAGGGTTCTGATTCTGGTTTACATGTTCCTCAGTCAAATGAAGCAAATAACAAGTCAGTTCCTGCTACAACTCCACTTGTTTGCGAGAGATGTTGGTGTGAAATAGAAAACAGCAAAGGTAATATAACACCGGGCCCTGCAGATGGAATAAACTTGAAGAGCGTGCTCTCTGGGCCAGCACCAACTGGTTGTAACAACAGTAGAGAAGTTGCAAAAGTGAAAAAGAATGGCAGATTGAAAGAGCAGCTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACTACAGCAGTAGTACAAGTACCAGCGACGAGAGTAATGTCAGTGGTTCTAGTTTTGGCAATAGGCCTCACATGTCAAAGGATTTTAGATGGCAAGCCATACGAGATGCTCAAATGCAGCATGGAGTATTAGGCTTGAGAAACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGTACCGTATATCTTTCTGAACTAATTGGCCAAAATTGTTTGTTTGCTATTAAAGTAATGGACAATGAATTTTTGGCACGAAGGAAGAAGATGCCTAGGGCACAAACTGAAAGGGAAATATTACGAATGCTGGATCATCCTTTTCTTCCAACACTCTATGCACAGTTTACATCAGAAAATCTGTCATGTCTTGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGTAGATGTTTTTCAGAACCAGCAGCAAGGTTTTACGTTGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTCGGAGTTGTTTACCGTGATTTGAAACCAGAGAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACTGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTTCTGATATAGATCCTGCCAAGGTTTCTGGTACATGTGCAAAGTCAAGCTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCATGCTTCAGTCCTAGATTCTTACCACCCGGGGCAAAAGCAAGAAAACTCAAAGCTGATCTTGCTGCTCATATCAGATCACTGCCACAGCTTGTGGCAGAGCCCACGGATGCAAGATCAAACTCTTTTGTTGGTACTCATGAATACCTAGCGCCCGAGATCATCAAAGGAGAGGGACATGGAGCTGCTGTTGATTGGTGGACCTTTGGTGTTTTTCTGTACGAGCTTTTATATGGTAGAACACCCTTCAAAGGTTCTAATAATGAAGAAACGTTAGCCAATGTCGTGTTGCAAAATCTCAGATTCCCTGATAGCCCATTTGTCAGTTTCCAAGCAAGGGATCTTATCAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGATTGGGTACAGAGAAAGGGGCTGCAGAGATTAAACAACATCCGTTCTTCGAGGGGCTTAATTGGGCCTTAATACGTTGTGCTATTCCACCAGAACTTCCAGACCTTTGTGAATTCGAGTTGGGAGTTTCAGACATGATCGCACAGTCACAAAGCAAGGGTGGTAAATATTTAGAGTGTACAACAACAGGTGGACAAGTGGAATTTGAGTTGTTTTAG

Protein sequence

>Msa0163890

MTMGVPRSPRVGISEPVTLKQALRDLCISKASEMAAMKRLSKSGASPRISEAGKIQTLYNSVVTDARRSGPSNVDSSKRSSTEIPPVLEESKSLGLNKESQSLQTSKSVLSQNVQSSEIAVAENETGASLMRSDLECSSSKVGVSSQSLEPIQMEKQMSASSPPCCNTNGSKVELPEKDSSPKKLGNKASTRKGMLQTTSSSSTSINGNRVCKLSRHSPRAVKSIIKNKSLGKKKPKQGSDSGLHVPQSNEANNKSVPATTPLVCERCWCEIENSKGNITPGPADGINLKSVLSGPAPTGCNNSREVAKVKKNGRLKEQLEFSQSSKSSQGDYSSSTSTSDESNVSGSSFGNRPHMSKDFRWQAIRDAQMQHGVLGLRNFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSSDIDPAKVSGTCAKSSCIEPFCIEPSCQVACFSPRFLPPGAKARKLKADLAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGVSDMIAQSQSKGGKYLECTTTGGQVEFELF*