AlfalfaGEDB | Msa0164960

M. sativa cultivar zhongmu-4 / Msa0164960

KEGG: K08286
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164960	XP_013450752.1	96.190	630	22	2	1	628	1	630	0.0	1253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164960	sp\|P15792\|KPK1_PHAVU	74.568	637	125	12	1	628	1	609	0.0	907

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164960	A0A072UG73	96.190	630	22	2	1	628	1	630	0.0	1253

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164960	MtrunA17_Chr6g0449401	90.855	667	22	3	1	628	13	679	0.0	1214
Msa0164960	MtrunA17_Chr7g0227331	69.207	643	158	15	1	628	1	618	0.0	832
Msa0164960	MtrunA17_Chr2g0290691	68.560	493	131	5	159	628	113	604	0.0	700
Msa0164960	MtrunA17_Chr7g0250631	62.083	509	163	7	148	628	255	761	0.0	630
Msa0164960	MtrunA17_Chr8g0335351	66.667	462	142	6	148	599	261	720	0.0	612
Msa0164960	MtrunA17_Chr1g0179101	64.407	413	139	4	192	600	413	821	0.0	548
Msa0164960	MtrunA17_Chr7g0266031	59.653	461	173	6	148	600	388	843	0.0	547
Msa0164960	MtrunA17_Chr3g0080101	59.060	447	161	7	163	601	337	769	1.50e-179	529
Msa0164960	MtrunA17_Chr2g0309421	58.166	447	159	8	204	628	131	571	1.30e-178	518
Msa0164960	MtrunA17_Chr8g0356291	61.962	418	149	6	189	600	65	478	7.49e-178	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0164960	AT5G47750.1	69.231	494	123	7	159	628	98	586	690
Msa0164960	AT4G26610.1	68.916	489	140	6	148	628	22	506	672
Msa0164960	AT5G55910.2	68.699	492	134	7	151	628	13	498	665
Msa0164960	AT5G55910.1	68.699	492	134	7	151	628	13	498	665
Msa0164960	AT3G27580.2	66.926	514	130	8	140	628	80	578	662
Msa0164960	AT3G27580.1	66.926	514	130	8	140	628	80	578	662
Msa0164960	AT2G44830.2	67.925	424	123	7	192	607	303	721	590
Msa0164960	AT2G44830.3	67.925	424	123	7	192	607	303	721	590
Msa0164960	AT2G44830.1	67.925	424	123	7	192	607	303	721	590
Msa0164960	AT5G40030.1	62.322	422	133	7	225	628	86	499	542

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Find 134 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCAACTGAAAATGAAGT+TGG	0.456517	1_4:+44908835	Msa0164960:CDS
AAGAAACAATGGAAGGTTGC+CGG	0.439220	1_4:+44906670	Msa0164960:CDS
AAGCTGACAGTAGGAGATTC+TGG	0.319263	1_4:-44908640	None:intergenic
AAGCTGTACGAGCTCGCGAG+GGG	0.625680	1_4:+44907125	Msa0164960:CDS
AAGGGAGGCCGCGAAGAACG+GGG	0.663699	1_4:-44906512	None:intergenic
AATCTACAGAGACCTTAAAC+CGG	0.553690	1_4:+44908132	Msa0164960:CDS
AATGTGTTGGTGAGAGAAGA+TGG	0.540509	1_4:+44908157	Msa0164960:CDS
AATTCTAAATAATTTCCAGA+AGG	0.569121	1_4:-44908865	None:intergenic
ACACTCACTGACTTCAGTAC+TGG	0.535887	1_4:-44906912	None:intergenic
ACAGCCTTCCTATAACATCA+GGG	0.679147	1_4:+44906486	Msa0164960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTGTTCCAAAAAAGATC+TGG	-	chr1_4:44906570-44906589	None:intergenic	30.0%
TAACTACATAGCTGTTTAGA+TGG	-	chr1_4:44906628-44906647	None:intergenic	30.0%
TCATATCACGAAAGAAACAA+TGG	+	chr1_4:44906659-44906678	Msa0164960:CDS	30.0%
AGAACTTGAGTCAAAATTCT+CGG	-	chr1_4:44906732-44906751	None:intergenic	30.0%
ATTCTTCGGTTGATTAACAA+CGG	-	chr1_4:44906801-44906820	None:intergenic	30.0%
GACTGAGAATTGTAATTCTT+CGG	-	chr1_4:44906815-44906834	None:intergenic	30.0%
TGCTTTGTATAAACCTCATA+AGG	+	chr1_4:44907075-44907094	Msa0164960:CDS	30.0%
CTTATATCATTTGCCTTATG+AGG	-	chr1_4:44907091-44907110	None:intergenic	30.0%
TGTAATTTATTAGCCCTGTT+TGG	+	chr1_4:44907607-44907626	Msa0164960:intron	30.0%
TATCTTATGAAAAGCTCAGT+TGG	-	chr1_4:44907674-44907693	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	44906413	44908900	44906413	ID=Msa0164960;Name=Msa0164960
chr1_4	mRNA	44906413	44908900	44906413	ID=Msa0164960-mRNA-1;Parent=Msa0164960;Name=Msa0164960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|628
chr1_4	exon	44906413	44907476	44906413	ID=Msa0164960-mRNA-1:exon:12903;Parent=Msa0164960-mRNA-1
chr1_4	exon	44908078	44908900	44908078	ID=Msa0164960-mRNA-1:exon:12904;Parent=Msa0164960-mRNA-1
chr1_4	CDS	44906413	44907476	44906413	ID=Msa0164960-mRNA-1:cds;Parent=Msa0164960-mRNA-1
chr1_4	CDS	44908078	44908900	44908078	ID=Msa0164960-mRNA-1:cds;Parent=Msa0164960-mRNA-1

Gene Sequence

>Msa0164960

ATGGAGTCTCCTATGACTGCAGTTGAAACTATTGCAGAGGTTCAGAATTCAGTTTCTGAGGTACCGATACGCCACAGCCTTCCTATAACATCAGGGATTCCCCGTTCTTCGCGGCCTCCCTTATATAGAAATAATCAAGGAGCTTCTTCTTCTTCCAGATCTTTTTTGGAACAAAGACATTATCATCATAATTATGGAACAAAGAAGATTCACCATCTAAACAGCTATGTAGTTAATCAAAAGCATTCATATCACGAAAGAAACAATGGAAGGTTGCCGGCAAAATTATGCAGCAAGCAAATGTTTGATGATGATTCCGAGAATTTTGACTCAAGTTCTGAAGTATTAGAATCTGACAATAGTATCTTAGTTCCATCGAAACGAGCCGTTGTTAATCAACCGAAGAATTACAATTCTCAGTCAGAGACTAGTTTTTGTCCTAGTCCTCAGAACAGTTACTATTCAGCCACTGTCTATTCGGAAGCGAAACAAAGTTTCACCAGTACTGAAGTCAGTGAGTGTGTGAGTGTTGATGGTAAGTCGTGTGAGAGCGGAGAAGTTCCGAATTTCAGTGATTTTAATGAGAGTAGGAAAACCAGTATCTGTAGAGCGAGTACCGGAAGTGATGTTAGTGATGAAAGCAACACGAGTAGTTTGAGCGGTGCTTTGTATAAACCTCATAAGGCAAATGATATAAGATGGGAAGCGATTCAAGCTGTACGAGCTCGCGAGGGGATGTTGGAAATGAGGCATTTTAGAATATTGAAGAGATTGGGAAGTGGAGATATAGGAAATGTGTATCTAGCTGAACTTAGTGGCACAAGGACTTCTTTTGCTATGAAACTCATGAACAAAACCGAGCTTGCGACTCGTAAGAAGCTACTGAGGGCTCAGACGGAAAGAGAGATATTGCAGTCTTTAGATCATCCTTTTTTACCTACATTATATACACACTTTGAGACTGAGACACTCTCTTGCTTGGTAATGGAGTTTTGTCCCGGTGGCGACCTTCATGCAATCAGGCAAAGACAACCTGGGAAGTATTTTTCAGAGCACGCTGTCAGGTTTTATGTTGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAATAATCTACAGAGACCTTAAACCGGAGAATGTGTTGGTGAGAGAAGATGGTCATATCATGCTCTCAGATTTCGATCTCTCTCTAAGGTGCACCGTCAGTCCAACTCTAGTGAAGTCATCAAACCCGATCACTGAAACTAAAAGCTCCGGATACTGCATTCAGCCAGCCTGTGCAATGCAGCCTGACTGCATCCAACATGCATGCTTTTTGCCACGGTTTCTATCCGGAAAATCCAAAGAGAAAAAATTCAGACTAAAGAATGACATGCATCACCAAATGACACCTCTCCCTGAGCTAGTTGCAGAGCCAACAAGTGCGCGGTCAATGTCCTTTGTAGGCACACACGAGTACTTGGCGCCTGAAATTATTAAAGGAGAAGGACATGGAAGTGCTGTGGATTGGTGGACGTTCGGGATATTCTTATACGAACTCTTGTTTGGTCGAACACCGTTCAAAGGTTCTGGGAATCGAACCACGATGTTTAATGTTGTTGGGCAGCCTTTAAGGTTTCCAGAATCTCCTACTGTCAGCTTTGCTGCAAGGGACTTGATCAGAGGTTTACTTGTGAAAGAGCCCCAACACCGTCTTGCCTATAGACGCGGAGCTACCGAAATCAAACAACATCCGTTCTTTCACAATGTGAACTGGGCACTGATCCGCTGCGCTAATCCTCCAGAGGTACCAAGACCAATGATGATGAAACCAAACTCAACTGAAAATGAAGTTGGAATGAACCCTTCTGGAAATTATTTAGAATTTGATTACTTTTGA

Protein sequence

>Msa0164960

MESPMTAVETIAEVQNSVSEVPIRHSLPITSGIPRSSRPPLYRNNQGASSSSRSFLEQRHYHHNYGTKKIHHLNSYVVNQKHSYHERNNGRLPAKLCSKQMFDDDSENFDSSSEVLESDNSILVPSKRAVVNQPKNYNSQSETSFCPSPQNSYYSATVYSEAKQSFTSTEVSECVSVDGKSCESGEVPNFSDFNESRKTSICRASTGSDVSDESNTSSLSGALYKPHKANDIRWEAIQAVRAREGMLEMRHFRILKRLGSGDIGNVYLAELSGTRTSFAMKLMNKTELATRKKLLRAQTEREILQSLDHPFLPTLYTHFETETLSCLVMEFCPGGDLHAIRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNPITETKSSGYCIQPACAMQPDCIQHACFLPRFLSGKSKEKKFRLKNDMHHQMTPLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRTTMFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRPMMMKPNSTENEVGMNPSGNYLEFDYF*