Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167780 | sp|Q8L3W1|VRN1_ARATH | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 8.25e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167780 | A0A396IHE6 | 65.031 | 326 | 107 | 3 | 1 | 323 | 1 | 322 | 3.15e-147 | 426 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0167780 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167780 | MtrunA17_Chr4g0067431 | 65.031 | 326 | 107 | 3 | 1 | 323 | 1 | 322 | 6.06e-151 | 426 |
| Msa0167780 | MtrunA17_Chr1g0163221 | 58.642 | 324 | 110 | 7 | 1 | 323 | 1 | 301 | 1.44e-111 | 328 |
| Msa0167780 | MtrunA17_Chr6g0467351 | 64.407 | 236 | 71 | 3 | 1 | 233 | 1 | 226 | 2.45e-98 | 289 |
| Msa0167780 | MtrunA17_Chr1g0163061 | 57.358 | 265 | 68 | 2 | 1 | 220 | 1 | 265 | 4.05e-78 | 239 |
| Msa0167780 | MtrunA17_Chr1g0163071 | 29.412 | 306 | 192 | 8 | 28 | 321 | 2 | 295 | 1.51e-33 | 125 |
| Msa0167780 | MtrunA17_Chr3g0131891 | 32.051 | 312 | 177 | 12 | 10 | 312 | 17 | 302 | 5.99e-32 | 121 |
| Msa0167780 | MtrunA17_Chr1g0163131 | 30.159 | 315 | 190 | 15 | 8 | 311 | 14 | 309 | 7.75e-31 | 118 |
| Msa0167780 | MtrunA17_Chr3g0103181 | 28.990 | 307 | 177 | 10 | 10 | 312 | 10 | 279 | 1.78e-29 | 114 |
| Msa0167780 | MtrunA17_Chr1g0163251 | 28.525 | 305 | 178 | 10 | 12 | 311 | 9 | 278 | 2.28e-28 | 113 |
| Msa0167780 | MtrunA17_Chr8g0390841 | 27.187 | 320 | 208 | 10 | 10 | 321 | 37 | 339 | 1.47e-27 | 112 |
| Msa0167780 | MtrunA17_Chr1g0208771 | 27.243 | 301 | 191 | 10 | 27 | 317 | 12 | 294 | 4.37e-27 | 110 |
| Msa0167780 | MtrunA17_Chr1g0163181 | 29.932 | 294 | 187 | 11 | 21 | 311 | 14 | 291 | 1.15e-26 | 108 |
| Msa0167780 | MtrunA17_Chr3g0103151 | 38.562 | 153 | 85 | 5 | 10 | 158 | 10 | 157 | 5.44e-26 | 101 |
| Msa0167780 | MtrunA17_Chr1g0163261 | 28.197 | 305 | 190 | 9 | 8 | 311 | 5 | 281 | 5.72e-26 | 105 |
| Msa0167780 | MtrunA17_Chr7g0233561 | 27.063 | 303 | 187 | 8 | 10 | 298 | 16 | 298 | 1.65e-25 | 104 |
| Msa0167780 | MtrunA17_Chr6g0467361 | 52.326 | 86 | 41 | 0 | 233 | 318 | 7 | 92 | 7.49e-25 | 96.3 |
| Msa0167780 | MtrunA17_Chr7g0233571 | 44.737 | 114 | 60 | 2 | 10 | 123 | 8 | 118 | 1.83e-24 | 99.0 |
| Msa0167780 | MtrunA17_Chr1g0163201 | 27.451 | 306 | 177 | 9 | 27 | 319 | 18 | 291 | 8.04e-24 | 100 |
| Msa0167780 | MtrunA17_Chr7g0233541 | 25.926 | 297 | 189 | 8 | 28 | 312 | 2 | 279 | 1.24e-23 | 98.6 |
| Msa0167780 | MtrunA17_Chr7g0233521 | 29.470 | 302 | 155 | 12 | 28 | 312 | 2 | 262 | 1.66e-23 | 97.8 |
| Msa0167780 | MtrunA17_Chr1g0163231 | 27.044 | 318 | 184 | 10 | 1 | 311 | 1 | 277 | 3.24e-23 | 97.4 |
| Msa0167780 | MtrunA17_Chr1g0163101 | 34.118 | 170 | 89 | 6 | 9 | 168 | 14 | 170 | 2.00e-22 | 92.4 |
| Msa0167780 | MtrunA17_Chr1g0171611 | 26.667 | 315 | 177 | 9 | 1 | 311 | 1 | 265 | 7.50e-22 | 93.6 |
| Msa0167780 | MtrunA17_Chr4g0033961 | 25.320 | 391 | 203 | 11 | 12 | 317 | 6 | 392 | 7.84e-22 | 95.5 |
| Msa0167780 | MtrunA17_Chr3g0103171 | 27.740 | 292 | 174 | 9 | 27 | 312 | 5 | 265 | 8.13e-22 | 92.8 |
| Msa0167780 | MtrunA17_Chr5g0419201 | 32.979 | 188 | 105 | 6 | 1 | 174 | 1 | 181 | 4.59e-21 | 89.0 |
| Msa0167780 | MtrunA17_Chr7g0233531 | 26.207 | 290 | 180 | 8 | 28 | 312 | 2 | 262 | 3.53e-20 | 88.6 |
| Msa0167780 | MtrunA17_Chr1g0154161 | 26.910 | 301 | 175 | 10 | 10 | 298 | 28 | 295 | 7.24e-20 | 88.6 |
| Msa0167780 | MtrunA17_Chr3g0103191 | 26.872 | 227 | 138 | 5 | 10 | 235 | 10 | 209 | 1.59e-19 | 86.3 |
| Msa0167780 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 87 | 6 | 28 | 182 | 2 | 150 | 7.66e-19 | 82.0 |
| Msa0167780 | MtrunA17_Chr1g0162161 | 37.500 | 144 | 77 | 7 | 28 | 166 | 4 | 139 | 1.04e-18 | 81.6 |
| Msa0167780 | MtrunA17_Chr1g0163191 | 38.168 | 131 | 66 | 5 | 1 | 127 | 2 | 121 | 3.68e-18 | 80.5 |
| Msa0167780 | MtrunA17_Chr1g0163081 | 36.364 | 121 | 66 | 4 | 28 | 141 | 6 | 122 | 3.98e-18 | 79.7 |
| Msa0167780 | MtrunA17_Chr1g0163121 | 35.772 | 123 | 68 | 5 | 26 | 141 | 9 | 127 | 4.85e-17 | 76.6 |
| Msa0167780 | MtrunA17_Chr3g0077411 | 24.383 | 324 | 179 | 11 | 1 | 314 | 251 | 518 | 1.46e-16 | 80.1 |
| Msa0167780 | MtrunA17_Chr3g0077411 | 31.034 | 145 | 94 | 3 | 11 | 153 | 24 | 164 | 7.90e-13 | 68.9 |
| Msa0167780 | MtrunA17_Chr1g0154191 | 24.390 | 328 | 204 | 10 | 10 | 298 | 20 | 342 | 6.12e-16 | 77.8 |
| Msa0167780 | MtrunA17_Chr5g0429931 | 25.773 | 291 | 152 | 10 | 27 | 312 | 10 | 241 | 1.19e-15 | 75.5 |
| Msa0167780 | MtrunA17_Chr1g0163241 | 33.099 | 142 | 79 | 5 | 15 | 152 | 14 | 143 | 5.63e-15 | 71.6 |
| Msa0167780 | MtrunA17_Chr1g0163141 | 30.814 | 172 | 101 | 6 | 26 | 183 | 9 | 176 | 1.61e-14 | 70.9 |
| Msa0167780 | MtrunA17_Chr3g0077461 | 31.646 | 158 | 99 | 3 | 11 | 160 | 236 | 392 | 1.86e-14 | 73.9 |
| Msa0167780 | MtrunA17_Chr1g0154151 | 25.510 | 294 | 184 | 10 | 28 | 298 | 20 | 301 | 3.43e-14 | 72.4 |
| Msa0167780 | MtrunA17_Chr1g0154131 | 26.471 | 306 | 168 | 12 | 23 | 305 | 193 | 464 | 3.63e-14 | 72.8 |
| Msa0167780 | MtrunA17_Chr3g0077451 | 22.759 | 290 | 155 | 8 | 26 | 312 | 10 | 233 | 3.24e-13 | 68.2 |
| Msa0167780 | MtrunA17_Chr1g0154171 | 25.000 | 340 | 209 | 12 | 13 | 319 | 23 | 349 | 5.59e-13 | 68.9 |
| Msa0167780 | MtrunA17_Chr1g0162441 | 32.353 | 102 | 68 | 1 | 12 | 113 | 7 | 107 | 2.27e-11 | 64.3 |
| Msa0167780 | MtrunA17_Chr1g0163161 | 38.298 | 94 | 48 | 4 | 40 | 127 | 1 | 90 | 4.44e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167780 | AT3G18990.1 | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 8.39e-24 | 100 |
| Msa0167780 | AT3G18990.2 | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 1.29e-23 | 100 |
| Msa0167780 | AT1G49475.1 | 37.903 | 124 | 74 | 3 | 5 | 127 | 26 | 147 | 2.27e-16 | 76.6 |
| Msa0167780 | AT3G18960.1 | 32.143 | 112 | 74 | 2 | 2 | 112 | 19 | 129 | 8.94e-16 | 75.5 |
| Msa0167780 | AT3G18960.2 | 32.143 | 112 | 74 | 2 | 2 | 112 | 19 | 129 | 9.73e-16 | 74.7 |
| Msa0167780 | AT4G01580.1 | 31.250 | 112 | 75 | 2 | 2 | 112 | 19 | 129 | 2.03e-15 | 73.9 |
| Msa0167780 | AT4G33280.1 | 26.126 | 333 | 187 | 13 | 10 | 316 | 23 | 322 | 1.63e-12 | 67.8 |
| Msa0167780 | AT3G18960.3 | 31.395 | 86 | 58 | 1 | 27 | 112 | 8 | 92 | 8.81e-11 | 60.5 |
Find 39 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 1_4:-49815122 | Msa0167780:CDS |
| TTATCTCTAATCCACATTTA+TGG | 0.145830 | 1_4:+49816755 | None:intergenic |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 1_4:-49815169 | Msa0167780:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 1_4:+49816324 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 1_4:-49815080 | Msa0167780:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 1_4:+49815227 | None:intergenic |
| CTACTGAAAAGAAAGTTTAT+TGG | 0.286292 | 1_4:-49816909 | Msa0167780:CDS |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 1_4:-49816821 | Msa0167780:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 1_4:+49816631 | None:intergenic |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 1_4:+49816934 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.332878 | 1_4:-49816908 | Msa0167780:CDS |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 1_4:+49815075 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 1_4:-49816882 | Msa0167780:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 1_4:-49817203 | Msa0167780:intron |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 1_4:+49816976 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 1_4:-49815121 | Msa0167780:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 1_4:+49815125 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 1_4:+49816727 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 1_4:-49815168 | Msa0167780:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 1_4:-49816286 | Msa0167780:intron |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 1_4:+49816539 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 1_4:+49816728 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 1_4:-49816301 | Msa0167780:CDS |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 1_4:-49816310 | Msa0167780:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 1_4:-49817211 | Msa0167780:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 1_4:-49817256 | Msa0167780:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 1_4:+49816975 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 1_4:-49816680 | Msa0167780:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 1_4:-49815217 | Msa0167780:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 1_4:-49815209 | Msa0167780:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 1_4:-49815120 | Msa0167780:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 1_4:+49815084 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 1_4:+49816325 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 1_4:-49816967 | Msa0167780:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 1_4:-49815213 | Msa0167780:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 1_4:+49816935 | None:intergenic |
| GTGATTGTACTCCATAAATG+TGG | 0.649956 | 1_4:-49816766 | Msa0167780:CDS |
| GAGGATCCTTCATCTTCGAG+AGG | 0.651394 | 1_4:-49816661 | Msa0167780:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 1_4:-49815119 | Msa0167780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | - | chr1_4:49816555-49816574 | Msa0167780:CDS | 10.0% |
| !! | ATAAAAAAAAATATTCACTA+CGG | - | chr1_4:49816638-49816657 | Msa0167780:CDS | 10.0% |
| !!! | AATTTTAATCTTATTTATGT+TGG | - | chr1_4:49816555-49816574 | Msa0167780:CDS | 10.0% |
| !! | ATAAAAAAAAATATTCACTA+CGG | - | chr1_4:49816638-49816657 | Msa0167780:CDS | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | - | chr1_4:49815808-49815827 | Msa0167780:intron | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | - | chr1_4:49815976-49815995 | Msa0167780:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | + | chr1_4:49816042-49816061 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | + | chr1_4:49816068-49816087 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATATTCACTAC+GGG | - | chr1_4:49816639-49816658 | Msa0167780:CDS | 15.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | - | chr1_4:49815808-49815827 | Msa0167780:intron | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | - | chr1_4:49815976-49815995 | Msa0167780:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | + | chr1_4:49816042-49816061 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | + | chr1_4:49816068-49816087 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATATTCACTAC+GGG | - | chr1_4:49816639-49816658 | Msa0167780:CDS | 15.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | - | chr1_4:49815331-49815350 | Msa0167780:intron | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | + | chr1_4:49815626-49815645 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | - | chr1_4:49815709-49815728 | Msa0167780:intron | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | - | chr1_4:49815722-49815741 | Msa0167780:intron | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | - | chr1_4:49815822-49815841 | Msa0167780:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | + | chr1_4:49816220-49816239 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | + | chr1_4:49816475-49816494 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | + | chr1_4:49816541-49816560 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | + | chr1_4:49816542-49816561 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | - | chr1_4:49816929-49816948 | Msa0167780:CDS | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | + | chr1_4:49816933-49816952 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | - | chr1_4:49816935-49816954 | Msa0167780:CDS | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | + | chr1_4:49817117-49817136 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | - | chr1_4:49817117-49817136 | Msa0167780:intron | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | - | chr1_4:49817118-49817137 | Msa0167780:intron | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | - | chr1_4:49817119-49817138 | Msa0167780:intron | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | - | chr1_4:49815331-49815350 | Msa0167780:intron | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | + | chr1_4:49815626-49815645 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | - | chr1_4:49815709-49815728 | Msa0167780:intron | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | - | chr1_4:49815722-49815741 | Msa0167780:intron | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | - | chr1_4:49815822-49815841 | Msa0167780:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | + | chr1_4:49816220-49816239 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | + | chr1_4:49816475-49816494 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | + | chr1_4:49816541-49816560 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | + | chr1_4:49816542-49816561 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | - | chr1_4:49816929-49816948 | Msa0167780:CDS | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | + | chr1_4:49816933-49816952 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | - | chr1_4:49816935-49816954 | Msa0167780:CDS | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | + | chr1_4:49817117-49817136 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | - | chr1_4:49817117-49817136 | Msa0167780:intron | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | - | chr1_4:49817118-49817137 | Msa0167780:intron | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | - | chr1_4:49817119-49817138 | Msa0167780:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | + | chr1_4:49815012-49815031 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | - | chr1_4:49815169-49815188 | Msa0167780:CDS | 25.0% |
| !! | ACTTTCTTTTCAGTAGTATT+AGG | + | chr1_4:49815326-49815345 | None:intergenic | 25.0% |
| ! | CTACTGAAAAGAAAGTTTAT+TGG | - | chr1_4:49815330-49815349 | Msa0167780:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | - | chr1_4:49815357-49815376 | Msa0167780:intron | 25.0% |
| ! | TTATCTCTAATCCACATTTA+TGG | + | chr1_4:49815487-49815506 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | + | chr1_4:49815661-49815680 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | - | chr1_4:49815781-49815800 | Msa0167780:intron | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | - | chr1_4:49815985-49816004 | Msa0167780:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | + | chr1_4:49816055-49816074 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | - | chr1_4:49816218-49816237 | Msa0167780:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | + | chr1_4:49816492-49816511 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | - | chr1_4:49816595-49816614 | Msa0167780:CDS | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | - | chr1_4:49816596-49816615 | Msa0167780:CDS | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | - | chr1_4:49816759-49816778 | Msa0167780:CDS | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | - | chr1_4:49816760-49816779 | Msa0167780:CDS | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | + | chr1_4:49816897-49816916 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | - | chr1_4:49817070-49817089 | Msa0167780:intron | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | - | chr1_4:49817071-49817090 | Msa0167780:intron | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | - | chr1_4:49817120-49817139 | Msa0167780:intron | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | + | chr1_4:49817167-49817186 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | - | chr1_4:49817236-49817255 | Msa0167780:CDS | 25.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | + | chr1_4:49815012-49815031 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | - | chr1_4:49815169-49815188 | Msa0167780:CDS | 25.0% |
| !! | ACTTTCTTTTCAGTAGTATT+AGG | + | chr1_4:49815326-49815345 | None:intergenic | 25.0% |
| ! | CTACTGAAAAGAAAGTTTAT+TGG | - | chr1_4:49815330-49815349 | Msa0167780:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | - | chr1_4:49815357-49815376 | Msa0167780:intron | 25.0% |
| ! | TTATCTCTAATCCACATTTA+TGG | + | chr1_4:49815487-49815506 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | + | chr1_4:49815661-49815680 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | - | chr1_4:49815781-49815800 | Msa0167780:intron | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | - | chr1_4:49815985-49816004 | Msa0167780:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | + | chr1_4:49816055-49816074 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | - | chr1_4:49816218-49816237 | Msa0167780:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | + | chr1_4:49816492-49816511 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | - | chr1_4:49816595-49816614 | Msa0167780:CDS | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | - | chr1_4:49816596-49816615 | Msa0167780:CDS | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | - | chr1_4:49816759-49816778 | Msa0167780:CDS | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | - | chr1_4:49816760-49816779 | Msa0167780:CDS | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | + | chr1_4:49816897-49816916 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | - | chr1_4:49817070-49817089 | Msa0167780:intron | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | - | chr1_4:49817071-49817090 | Msa0167780:intron | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | - | chr1_4:49817120-49817139 | Msa0167780:intron | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | + | chr1_4:49817167-49817186 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | - | chr1_4:49817236-49817255 | Msa0167780:CDS | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr1_4:49815368-49815387 | Msa0167780:intron | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | + | chr1_4:49815514-49815533 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | + | chr1_4:49815515-49815534 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | - | chr1_4:49815559-49815578 | Msa0167780:intron | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | - | chr1_4:49815726-49815745 | Msa0167780:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | + | chr1_4:49815802-49815821 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | - | chr1_4:49815953-49815972 | Msa0167780:intron | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | - | chr1_4:49816095-49816114 | Msa0167780:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | - | chr1_4:49816230-49816249 | Msa0167780:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | + | chr1_4:49816245-49816264 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | + | chr1_4:49816396-49816415 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | + | chr1_4:49816460-49816479 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | + | chr1_4:49816461-49816480 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | + | chr1_4:49816593-49816612 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | - | chr1_4:49816644-49816663 | Msa0167780:CDS | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | - | chr1_4:49816645-49816664 | Msa0167780:CDS | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | - | chr1_4:49816748-49816767 | Msa0167780:CDS | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | - | chr1_4:49816764-49816783 | Msa0167780:CDS | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | - | chr1_4:49816984-49817003 | Msa0167780:CDS | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | + | chr1_4:49817000-49817019 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | - | chr1_4:49817010-49817029 | Msa0167780:intron | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | + | chr1_4:49817158-49817177 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | - | chr1_4:49817159-49817178 | Msa0167780:intron | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | - | chr1_4:49817178-49817197 | Msa0167780:intron | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | + | chr1_4:49817250-49817269 | None:intergenic | 30.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr1_4:49815368-49815387 | Msa0167780:intron | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | + | chr1_4:49815514-49815533 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | + | chr1_4:49815515-49815534 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | - | chr1_4:49815559-49815578 | Msa0167780:intron | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | - | chr1_4:49815726-49815745 | Msa0167780:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | + | chr1_4:49815802-49815821 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | - | chr1_4:49815953-49815972 | Msa0167780:intron | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | - | chr1_4:49816095-49816114 | Msa0167780:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | - | chr1_4:49816230-49816249 | Msa0167780:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | + | chr1_4:49816245-49816264 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | + | chr1_4:49816396-49816415 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | + | chr1_4:49816460-49816479 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | + | chr1_4:49816461-49816480 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | + | chr1_4:49816593-49816612 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | - | chr1_4:49816644-49816663 | Msa0167780:CDS | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | - | chr1_4:49816645-49816664 | Msa0167780:CDS | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | - | chr1_4:49816748-49816767 | Msa0167780:CDS | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | - | chr1_4:49816764-49816783 | Msa0167780:CDS | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | - | chr1_4:49816984-49817003 | Msa0167780:CDS | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | + | chr1_4:49817000-49817019 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | - | chr1_4:49817010-49817029 | Msa0167780:intron | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | + | chr1_4:49817158-49817177 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | - | chr1_4:49817159-49817178 | Msa0167780:intron | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | - | chr1_4:49817178-49817197 | Msa0167780:intron | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | + | chr1_4:49817250-49817269 | None:intergenic | 30.0% |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | + | chr1_4:49815041-49815060 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr1_4:49815042-49815061 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | + | chr1_4:49815267-49815286 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | - | chr1_4:49815267-49815286 | Msa0167780:intron | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr1_4:49815372-49815391 | Msa0167780:intron | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | - | chr1_4:49815418-49815437 | Msa0167780:intron | 35.0% |
| GTGATTGTACTCCATAAATG+TGG | - | chr1_4:49815473-49815492 | Msa0167780:intron | 35.0% | |
| TATGAAATGTTGCATGTGCT+TGG | + | chr1_4:49815703-49815722 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | - | chr1_4:49815878-49815897 | Msa0167780:intron | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | + | chr1_4:49815917-49815936 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | - | chr1_4:49815938-49815957 | Msa0167780:intron | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | - | chr1_4:49816237-49816256 | Msa0167780:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | - | chr1_4:49816331-49816350 | Msa0167780:CDS | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | + | chr1_4:49816397-49816416 | None:intergenic | 35.0% |
| AAATATTCACTACGGGTATG+GGG | - | chr1_4:49816646-49816665 | Msa0167780:CDS | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | + | chr1_4:49816823-49816842 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | + | chr1_4:49817015-49817034 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | - | chr1_4:49817124-49817143 | Msa0167780:intron | 35.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | + | chr1_4:49815041-49815060 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr1_4:49815042-49815061 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | + | chr1_4:49815267-49815286 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | - | chr1_4:49815267-49815286 | Msa0167780:intron | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr1_4:49815372-49815391 | Msa0167780:intron | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | - | chr1_4:49815418-49815437 | Msa0167780:intron | 35.0% |
| GTGATTGTACTCCATAAATG+TGG | - | chr1_4:49815473-49815492 | Msa0167780:intron | 35.0% | |
| TATGAAATGTTGCATGTGCT+TGG | + | chr1_4:49815703-49815722 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | - | chr1_4:49815878-49815897 | Msa0167780:intron | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | + | chr1_4:49815917-49815936 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | - | chr1_4:49815938-49815957 | Msa0167780:intron | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | - | chr1_4:49816237-49816256 | Msa0167780:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | - | chr1_4:49816331-49816350 | Msa0167780:CDS | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | + | chr1_4:49816397-49816416 | None:intergenic | 35.0% |
| AAATATTCACTACGGGTATG+GGG | - | chr1_4:49816646-49816665 | Msa0167780:CDS | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | + | chr1_4:49816823-49816842 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | + | chr1_4:49817015-49817034 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | - | chr1_4:49817124-49817143 | Msa0167780:intron | 35.0% | |
| TCTTCTCATGAACCTGATCA+TGG | - | chr1_4:49814983-49815002 | Msa0167780:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | + | chr1_4:49814998-49815017 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | - | chr1_4:49815028-49815047 | Msa0167780:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | - | chr1_4:49815036-49815055 | Msa0167780:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | + | chr1_4:49815266-49815285 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | - | chr1_4:49815272-49815291 | Msa0167780:intron | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | + | chr1_4:49815307-49815326 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | + | chr1_4:49815308-49815327 | None:intergenic | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | + | chr1_4:49815611-49815630 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | + | chr1_4:49815685-49815704 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | + | chr1_4:49815918-49815937 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | - | chr1_4:49815929-49815948 | Msa0167780:intron | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | + | chr1_4:49816157-49816176 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | + | chr1_4:49816161-49816180 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | + | chr1_4:49816277-49816296 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | + | chr1_4:49816278-49816297 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | - | chr1_4:49816377-49816396 | Msa0167780:CDS | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | + | chr1_4:49816451-49816470 | None:intergenic | 40.0% | |
| GGGTAGACGTATATTAGACT+GGG | + | chr1_4:49816521-49816540 | None:intergenic | 40.0% | |
| TGGGTAGACGTATATTAGAC+TGG | + | chr1_4:49816522-49816541 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | - | chr1_4:49816721-49816740 | Msa0167780:CDS | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | + | chr1_4:49816810-49816829 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | + | chr1_4:49816811-49816830 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | - | chr1_4:49816814-49816833 | Msa0167780:CDS | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | + | chr1_4:49816818-49816837 | None:intergenic | 40.0% | |
| TCTTCTCATGAACCTGATCA+TGG | - | chr1_4:49814983-49815002 | Msa0167780:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | + | chr1_4:49814998-49815017 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | - | chr1_4:49815028-49815047 | Msa0167780:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | - | chr1_4:49815036-49815055 | Msa0167780:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | + | chr1_4:49815266-49815285 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | - | chr1_4:49815272-49815291 | Msa0167780:intron | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | + | chr1_4:49815307-49815326 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | + | chr1_4:49815308-49815327 | None:intergenic | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | + | chr1_4:49815611-49815630 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | + | chr1_4:49815685-49815704 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | + | chr1_4:49815918-49815937 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | - | chr1_4:49815929-49815948 | Msa0167780:intron | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | + | chr1_4:49816157-49816176 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | + | chr1_4:49816161-49816180 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | + | chr1_4:49816277-49816296 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | + | chr1_4:49816278-49816297 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | - | chr1_4:49816377-49816396 | Msa0167780:CDS | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | + | chr1_4:49816451-49816470 | None:intergenic | 40.0% | |
| GGGTAGACGTATATTAGACT+GGG | + | chr1_4:49816521-49816540 | None:intergenic | 40.0% | |
| TGGGTAGACGTATATTAGAC+TGG | + | chr1_4:49816522-49816541 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | - | chr1_4:49816721-49816740 | Msa0167780:CDS | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | + | chr1_4:49816810-49816829 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | + | chr1_4:49816811-49816830 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | - | chr1_4:49816814-49816833 | Msa0167780:CDS | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | + | chr1_4:49816818-49816837 | None:intergenic | 40.0% | |
| ! | CTTTTGCCTCTCGAAGATGA+AGG | + | chr1_4:49815587-49815606 | None:intergenic | 45.0% |
| TTCGGTCGGGTAACGAATAT+GGG | + | chr1_4:49816134-49816153 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | + | chr1_4:49816158-49816177 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | + | chr1_4:49816162-49816181 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | - | chr1_4:49816175-49816194 | Msa0167780:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | - | chr1_4:49816176-49816195 | Msa0167780:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | + | chr1_4:49816180-49816199 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | + | chr1_4:49816272-49816291 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | + | chr1_4:49816276-49816295 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | + | chr1_4:49816300-49816319 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | + | chr1_4:49816363-49816382 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | - | chr1_4:49816720-49816739 | Msa0167780:CDS | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | + | chr1_4:49816726-49816745 | None:intergenic | 45.0% | |
| ! | CTTTTGCCTCTCGAAGATGA+AGG | + | chr1_4:49815587-49815606 | None:intergenic | 45.0% |
| TTCGGTCGGGTAACGAATAT+GGG | + | chr1_4:49816134-49816153 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | + | chr1_4:49816158-49816177 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | + | chr1_4:49816162-49816181 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | - | chr1_4:49816175-49816194 | Msa0167780:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | - | chr1_4:49816176-49816195 | Msa0167780:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | + | chr1_4:49816180-49816199 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | + | chr1_4:49816272-49816291 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | + | chr1_4:49816276-49816295 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | + | chr1_4:49816300-49816319 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | + | chr1_4:49816363-49816382 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | - | chr1_4:49816720-49816739 | Msa0167780:CDS | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | + | chr1_4:49816726-49816745 | None:intergenic | 45.0% | |
| GAGGATCCTTCATCTTCGAG+AGG | - | chr1_4:49815578-49815597 | Msa0167780:intron | 50.0% | |
| GTTCGGTCGGGTAACGAATA+TGG | + | chr1_4:49816135-49816154 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | + | chr1_4:49816152-49816171 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | + | chr1_4:49816181-49816200 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | + | chr1_4:49816265-49816284 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | - | chr1_4:49816280-49816299 | Msa0167780:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | + | chr1_4:49816301-49816320 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | - | chr1_4:49816383-49816402 | Msa0167780:CDS | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | + | chr1_4:49816805-49816824 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | - | chr1_4:49817022-49817041 | Msa0167780:intron | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | - | chr1_4:49817026-49817045 | Msa0167780:intron | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | - | chr1_4:49817030-49817049 | Msa0167780:intron | 50.0% | |
| GAGGATCCTTCATCTTCGAG+AGG | - | chr1_4:49815578-49815597 | Msa0167780:intron | 50.0% | |
| GTTCGGTCGGGTAACGAATA+TGG | + | chr1_4:49816135-49816154 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | + | chr1_4:49816152-49816171 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | + | chr1_4:49816181-49816200 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | + | chr1_4:49816265-49816284 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | - | chr1_4:49816280-49816299 | Msa0167780:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | + | chr1_4:49816301-49816320 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | - | chr1_4:49816383-49816402 | Msa0167780:CDS | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | + | chr1_4:49816805-49816824 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | - | chr1_4:49817022-49817041 | Msa0167780:intron | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | - | chr1_4:49817026-49817045 | Msa0167780:intron | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | - | chr1_4:49817030-49817049 | Msa0167780:intron | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | - | chr1_4:49815098-49815117 | Msa0167780:CDS | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | + | chr1_4:49815102-49815121 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | - | chr1_4:49815099-49815118 | Msa0167780:CDS | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | + | chr1_4:49815103-49815122 | None:intergenic | 55.0% |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | + | chr1_4:49816147-49816166 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | + | chr1_4:49816148-49816167 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | + | chr1_4:49816290-49816309 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | - | chr1_4:49816344-49816363 | Msa0167780:CDS | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | - | chr1_4:49816656-49816675 | Msa0167780:CDS | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | - | chr1_4:49816657-49816676 | Msa0167780:CDS | 55.0% | |
| AATCTCACCCCCGTCCCTAT+GGG | + | chr1_4:49816692-49816711 | None:intergenic | 55.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | - | chr1_4:49815098-49815117 | Msa0167780:CDS | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | + | chr1_4:49815102-49815121 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | - | chr1_4:49815099-49815118 | Msa0167780:CDS | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | + | chr1_4:49815103-49815122 | None:intergenic | 55.0% |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | + | chr1_4:49816147-49816166 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | + | chr1_4:49816148-49816167 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | + | chr1_4:49816290-49816309 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | - | chr1_4:49816344-49816363 | Msa0167780:CDS | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | - | chr1_4:49816656-49816675 | Msa0167780:CDS | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | - | chr1_4:49816657-49816676 | Msa0167780:CDS | 55.0% | |
| AATCTCACCCCCGTCCCTAT+GGG | + | chr1_4:49816692-49816711 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | - | chr1_4:49816292-49816311 | Msa0167780:CDS | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | + | chr1_4:49816347-49816366 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | + | chr1_4:49816351-49816370 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | - | chr1_4:49816674-49816693 | Msa0167780:CDS | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | - | chr1_4:49816675-49816694 | Msa0167780:CDS | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | - | chr1_4:49816679-49816698 | Msa0167780:CDS | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | - | chr1_4:49816680-49816699 | Msa0167780:CDS | 60.0% | |
| GAATCTCACCCCCGTCCCTA+TGG | + | chr1_4:49816693-49816712 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | + | chr1_4:49816802-49816821 | None:intergenic | 60.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | - | chr1_4:49816292-49816311 | Msa0167780:CDS | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | + | chr1_4:49816347-49816366 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | + | chr1_4:49816351-49816370 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | - | chr1_4:49816674-49816693 | Msa0167780:CDS | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | - | chr1_4:49816675-49816694 | Msa0167780:CDS | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | - | chr1_4:49816679-49816698 | Msa0167780:CDS | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | - | chr1_4:49816680-49816699 | Msa0167780:CDS | 60.0% | |
| GAATCTCACCCCCGTCCCTA+TGG | + | chr1_4:49816693-49816712 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | + | chr1_4:49816802-49816821 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | - | chr1_4:49816681-49816700 | Msa0167780:CDS | 65.0% | |
| ACCCCCGTCCCTATGGGTTC+GGG | + | chr1_4:49816686-49816705 | None:intergenic | 65.0% | |
| CACCCCCGTCCCTATGGGTT+CGG | + | chr1_4:49816687-49816706 | None:intergenic | 65.0% | |
| TGCCCGAACCCATAGGGACG+GGG | - | chr1_4:49816681-49816700 | Msa0167780:CDS | 65.0% | |
| ACCCCCGTCCCTATGGGTTC+GGG | + | chr1_4:49816686-49816705 | None:intergenic | 65.0% | |
| CACCCCCGTCCCTATGGGTT+CGG | + | chr1_4:49816687-49816706 | None:intergenic | 65.0% | |
| GCCCGAACCCATAGGGACGG+GGG | - | chr1_4:49816682-49816701 | Msa0167780:CDS | 70.0% | |
| GCCCGAACCCATAGGGACGG+GGG | - | chr1_4:49816682-49816701 | Msa0167780:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49814980 | 49817281 | 49814980 | ID=Msa0167780;Name=Msa0167780 |
| chr1_4 | mRNA | 49814980 | 49817281 | 49814980 | ID=Msa0167780-mRNA-1;Parent=Msa0167780;Name=Msa0167780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|323 |
| chr1_4 | exon | 49817204 | 49817281 | 49817204 | ID=Msa0167780-mRNA-1:exon:14711;Parent=Msa0167780-mRNA-1 |
| chr1_4 | exon | 49816518 | 49817004 | 49816518 | ID=Msa0167780-mRNA-1:exon:14710;Parent=Msa0167780-mRNA-1 |
| chr1_4 | exon | 49816287 | 49816417 | 49816287 | ID=Msa0167780-mRNA-1:exon:14709;Parent=Msa0167780-mRNA-1 |
| chr1_4 | exon | 49814980 | 49815255 | 49814980 | ID=Msa0167780-mRNA-1:exon:14708;Parent=Msa0167780-mRNA-1 |
| chr1_4 | CDS | 49817204 | 49817281 | 49817204 | ID=Msa0167780-mRNA-1:cds;Parent=Msa0167780-mRNA-1 |
| chr1_4 | CDS | 49816518 | 49817004 | 49816518 | ID=Msa0167780-mRNA-1:cds;Parent=Msa0167780-mRNA-1 |
| chr1_4 | CDS | 49816287 | 49816417 | 49816287 | ID=Msa0167780-mRNA-1:cds;Parent=Msa0167780-mRNA-1 |
| chr1_4 | CDS | 49814980 | 49815255 | 49814980 | ID=Msa0167780-mRNA-1:cds;Parent=Msa0167780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
