AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168420 MtrunA17_Chr1g0184841 99.645 282 1 0 1 282 1 282 0.0 576
Msa0168420 MtrunA17_Chr1g0190731 80.571 175 34 0 104 278 177 351 3.03e-97 290
Msa0168420 MtrunA17_Chr4g0074161 65.854 164 46 3 108 262 194 356 3.05e-63 204
Msa0168420 MtrunA17_Chr1g0152131 51.579 95 45 1 91 184 231 325 1.42e-22 96.3
Msa0168420 MtrunA17_Chr7g0234761 60.000 75 29 1 111 184 308 382 4.43e-22 95.5
Msa0168420 MtrunA17_Chr8g0339091 60.000 75 29 1 111 184 282 356 7.41e-22 94.7
Msa0168420 MtrunA17_Chr3g0131771 48.980 98 49 1 112 208 139 236 7.64e-22 93.2
Msa0168420 MtrunA17_Chr3g0144641 65.152 66 22 1 120 184 191 256 5.00e-21 91.7
Msa0168420 MtrunA17_Chr8g0365941 63.636 66 23 1 120 184 305 370 3.00e-20 90.1
Msa0168420 MtrunA17_Chr4g0035101 63.636 66 23 1 120 184 143 208 3.56e-20 89.0
Msa0168420 MtrunA17_Chr5g0415291 56.000 75 32 1 111 184 103 177 5.69e-20 86.3
Msa0168420 MtrunA17_Chr5g0421111 62.687 67 24 1 119 184 364 430 6.84e-20 89.4
Msa0168420 MtrunA17_Chr8g0363921 60.606 66 25 1 120 184 151 216 1.44e-19 86.3
Msa0168420 MtrunA17_Chr8g0385911 50.588 85 37 2 119 202 144 224 1.67e-19 86.7
Msa0168420 MtrunA17_Chr4g0014771 62.121 66 24 1 119 183 117 182 1.99e-18 81.3
Msa0168420 MtrunA17_Chr1g0193321 50.000 74 33 1 122 195 464 533 7.33e-18 83.6
Msa0168420 MtrunA17_Chr1g0152651 58.462 65 27 0 119 183 273 337 1.23e-17 82.0
Msa0168420 MtrunA17_Chr1g0174271 54.667 75 33 1 113 186 291 365 1.58e-17 81.6
Msa0168420 MtrunA17_Chr3g0134741 48.780 82 42 0 119 200 228 309 2.62e-17 80.5
Msa0168420 MtrunA17_Chr1g0174161 48.864 88 39 3 119 205 159 241 3.28e-17 80.1
Msa0168420 MtrunA17_Chr6g0484271 57.576 66 27 1 120 184 155 220 3.74e-17 79.3
Msa0168420 MtrunA17_Chr1g0182791 50.000 72 32 1 122 193 319 386 3.96e-17 81.3
Msa0168420 MtrunA17_Chr5g0393721 56.923 65 28 0 119 183 223 287 5.49e-17 79.7
Msa0168420 MtrunA17_Chr1g0153241 42.697 89 44 2 100 188 71 152 6.80e-17 78.6
Msa0168420 MtrunA17_Chr7g0258161 56.716 67 28 1 119 184 172 238 3.53e-16 77.4
Msa0168420 MtrunA17_Chr7g0270871 53.571 56 26 0 131 186 213 268 3.99e-16 77.4
Msa0168420 MtrunA17_Chr1g0207311 51.316 76 37 0 108 183 184 259 4.56e-16 76.6
Msa0168420 MtrunA17_Chr7g0262691 45.070 71 39 0 122 192 254 324 6.67e-16 77.4
Msa0168420 MtrunA17_Chr3g0134001 48.750 80 40 1 113 192 164 242 1.33e-15 75.1
Msa0168420 MtrunA17_Chr7g0271251 47.368 76 37 1 122 197 434 506 1.44e-15 76.6
Msa0168420 MtrunA17_Chr8g0351881 52.174 69 32 1 119 186 315 383 1.62e-15 75.9
Msa0168420 MtrunA17_Chr7g0258181 45.882 85 36 2 103 186 235 310 2.14e-15 75.1
Msa0168420 MtrunA17_Chr3g0095391 49.206 63 32 0 122 184 311 373 2.35e-15 75.9
Msa0168420 MtrunA17_Chr4g0032951 53.623 69 31 1 119 186 354 422 2.38e-15 75.5
Msa0168420 MtrunA17_Chr5g0435021 41.304 92 50 2 93 183 193 281 3.03e-15 74.3
Msa0168420 MtrunA17_Chr2g0329041 54.688 64 28 1 119 181 331 394 9.29e-15 73.9
Msa0168420 MtrunA17_Chr1g0207301 47.059 68 36 0 116 183 284 351 1.01e-14 73.6
Msa0168420 MtrunA17_Chr5g0402031 41.304 92 46 2 131 217 116 204 1.27e-14 73.2
Msa0168420 MtrunA17_Chr8g0384141 49.333 75 38 0 108 182 102 176 1.31e-14 72.0
Msa0168420 MtrunA17_Chr1g0185741 33.333 126 72 1 126 251 190 303 2.24e-14 72.0
Msa0168420 MtrunA17_Chr3g0087771 53.030 66 30 1 119 183 321 386 7.07e-14 71.2
Msa0168420 MtrunA17_Chr7g0231461 43.750 64 36 0 120 183 297 360 1.70e-12 67.4
Msa0168420 MtrunA17_Chr7g0243041 47.170 53 28 0 127 179 33 85 5.29e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168420 AT4G02590.2 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0168420 AT4G02590.1 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0168420 AT4G02590.3 78.723 235 44 4 53 281 12 246 2.00e-115 332
Msa0168420 AT1G03040.1 68.919 296 62 8 8 282 16 302 1.61e-112 327
Msa0168420 AT1G03040.3 63.240 321 69 7 8 282 16 333 3.77e-108 317
Msa0168420 AT1G03040.2 67.797 295 62 9 8 282 16 297 4.71e-108 315
Msa0168420 AT2G24260.2 65.359 153 48 2 113 262 28 178 1.28e-62 198
Msa0168420 AT2G24260.1 65.359 153 48 2 113 262 131 281 1.49e-60 196
Msa0168420 AT5G58010.1 49.541 218 81 5 72 276 62 263 3.12e-60 193
Msa0168420 AT4G30980.1 57.714 175 64 2 106 280 116 280 6.67e-59 190
Msa0168420 AT4G30980.2 57.714 175 64 2 106 280 164 328 1.14e-58 191
Msa0168420 AT5G50915.3 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0168420 AT5G50915.4 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0168420 AT5G50915.1 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0168420 AT5G50915.2 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0168420 AT5G48560.2 61.333 75 28 1 111 184 292 366 3.67e-22 95.9
Msa0168420 AT5G48560.1 61.333 75 28 1 111 184 292 366 3.77e-22 96.3
Msa0168420 AT3G23690.1 45.378 119 55 3 67 184 147 256 4.77e-21 92.0
Msa0168420 AT1G10120.2 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0168420 AT1G10120.1 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0168420 AT3G07340.1 64.179 67 23 1 119 184 257 323 1.44e-20 91.3
Msa0168420 AT3G07340.2 65.152 66 22 1 120 184 258 323 1.53e-20 91.3
Msa0168420 AT4G34530.1 62.687 67 24 1 119 184 171 237 1.57e-20 90.1
Msa0168420 AT1G68920.3 63.636 66 23 1 120 184 302 367 2.48e-20 90.9
Msa0168420 AT1G68920.1 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0168420 AT1G68920.4 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0168420 AT1G68920.2 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0168420 AT5G62610.2 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0168420 AT5G62610.1 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0168420 AT1G26260.3 52.273 88 36 3 119 205 171 253 7.49e-20 88.2
Msa0168420 AT1G26260.5 52.273 88 36 3 119 205 200 282 7.49e-20 88.6
Msa0168420 AT1G26260.4 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0168420 AT1G26260.1 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0168420 AT1G26260.6 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0168420 AT1G26260.2 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0168420 AT4G33880.1 51.685 89 43 0 116 204 262 350 2.34e-19 87.0
Msa0168420 AT2G18300.1 60.606 66 25 1 120 184 185 250 2.38e-19 86.7
Msa0168420 AT2G18300.2 60.606 66 25 1 120 184 185 250 2.40e-19 86.7
Msa0168420 AT2G18300.3 60.606 66 25 1 120 184 185 250 3.33e-19 86.7
Msa0168420 AT1G25330.1 52.326 86 39 2 112 196 96 180 3.65e-19 84.3
Msa0168420 AT1G59640.1 60.606 66 25 1 120 184 136 201 4.82e-19 84.7
Msa0168420 AT1G73830.2 62.121 66 24 1 120 184 147 212 4.90e-19 84.7
Msa0168420 AT1G73830.1 62.121 66 24 1 120 184 147 212 5.19e-19 84.7
Msa0168420 AT4G36540.2 59.091 66 26 1 120 184 141 206 8.85e-19 84.7
Msa0168420 AT4G36540.1 59.091 66 26 1 120 184 141 206 9.07e-19 84.7
Msa0168420 AT2G14760.1 50.575 87 43 0 116 202 233 319 1.17e-18 84.7
Msa0168420 AT1G59640.2 60.606 66 25 1 120 184 136 201 1.49e-18 84.7
Msa0168420 AT1G18400.2 56.000 75 31 2 119 192 144 217 2.20e-18 82.8
Msa0168420 AT1G18400.1 60.606 66 25 1 120 184 145 210 4.40e-18 82.0
Msa0168420 AT3G57800.2 39.416 137 58 3 120 231 204 340 4.93e-18 83.6
Msa0168420 AT1G27740.1 43.158 95 53 1 90 183 136 230 9.34e-18 81.3
Msa0168420 AT2G42300.1 43.697 119 54 5 119 229 184 297 2.15e-17 81.3
Msa0168420 AT4G09180.1 60.606 66 25 1 119 183 183 248 2.84e-17 79.7
Msa0168420 AT1G09530.3 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G09530.2 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G09530.5 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G09530.1 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G09530.4 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G09530.6 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0168420 AT1G35460.1 60.606 66 25 1 119 183 180 245 6.22e-17 79.0
Msa0168420 AT2G42300.4 54.023 87 34 4 120 205 185 266 7.89e-17 79.0
Msa0168420 AT2G42280.1 56.522 69 29 1 119 186 278 346 8.26e-17 79.7
Msa0168420 AT2G20180.7 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0168420 AT2G20180.1 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0168420 AT2G20180.5 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0168420 AT2G20180.4 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0168420 AT2G20180.6 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0168420 AT2G20180.2 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0168420 AT2G20180.3 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0168420 AT2G14760.3 45.000 100 42 1 116 202 233 332 2.88e-16 78.2
Msa0168420 AT5G43175.1 49.275 69 35 0 115 183 127 195 3.01e-16 76.3
Msa0168420 AT2G42280.3 59.375 64 25 1 119 181 278 341 8.79e-16 77.0
Msa0168420 AT2G20180.8 51.667 60 29 0 122 181 280 339 1.32e-15 76.3
Msa0168420 AT1G51140.1 55.072 69 30 1 119 186 303 371 5.69e-15 74.7
Msa0168420 AT3G21330.1 60.714 56 22 0 127 182 276 331 1.17e-14 73.6
Msa0168420 AT1G66470.1 47.945 73 37 1 129 200 204 276 1.64e-14 72.8
Msa0168420 AT5G37800.1 47.945 73 37 1 129 200 210 282 2.51e-14 72.0
Msa0168420 AT4G36930.1 50.847 59 29 0 126 184 197 255 4.28e-14 72.0
Msa0168420 AT5G67110.1 50.847 59 28 1 131 188 98 156 1.06e-13 68.9
Msa0168420 AT4G28790.1 44.118 68 38 0 117 184 268 335 2.06e-13 70.1
Msa0168420 AT4G00050.2 45.312 64 35 0 120 183 105 168 2.49e-13 69.3
Msa0168420 AT4G00050.1 45.312 64 35 0 120 183 207 270 4.95e-13 68.9
Msa0168420 AT4G00050.3 45.312 64 35 0 120 183 207 270 6.02e-13 68.6
Msa0168420 AT4G28815.2 43.860 57 32 0 123 179 71 127 9.24e-13 66.6
Msa0168420 AT2G46970.2 39.189 74 41 1 122 195 194 263 2.17e-12 67.0
Msa0168420 AT2G46970.1 39.189 74 41 1 122 195 225 294 2.23e-12 67.0
Msa0168420 AT2G46970.3 39.189 74 41 1 122 195 203 272 2.31e-12 67.0
Msa0168420 AT4G28815.1 43.860 57 32 0 123 179 147 203 2.35e-12 66.6
Msa0168420 AT2G43140.1 36.220 127 66 4 59 182 83 197 2.55e-12 65.1
Msa0168420 AT2G43140.2 53.846 65 29 1 119 182 230 294 2.77e-12 66.2
Msa0168420 AT5G01305.1 47.541 61 32 0 119 179 36 96 3.63e-12 63.9
Msa0168420 AT4G28800.1 36.000 75 44 1 123 197 252 322 4.56e-12 66.2
Msa0168420 AT2G43010.1 53.333 60 28 0 123 182 254 313 4.91e-12 66.2
Msa0168420 AT2G43010.2 53.333 60 28 0 123 182 254 313 4.93e-12 66.2
Msa0168420 AT4G28790.2 43.750 64 36 0 117 180 268 331 5.40e-12 65.9
Msa0168420 AT2G43010.3 53.333 60 28 0 123 182 261 320 5.45e-12 65.9
Msa0168420 AT3G59060.3 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0168420 AT3G59060.2 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0168420 AT3G59060.4 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0168420 AT3G59060.1 49.206 63 32 0 122 184 252 314 6.38e-12 65.9
Msa0168420 AT2G43010.5 53.333 60 28 0 123 182 296 355 6.80e-12 65.9
Msa0168420 AT2G43010.4 53.333 60 28 0 123 182 254 313 7.31e-12 65.5
Msa0168420 AT4G00120.1 43.210 81 44 2 114 192 105 185 1.13e-11 63.2

Find 155 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGAGTGGGAAGCGTTTC+CGG 0.137108 1_4:-51015313 Msa0168420:CDS
AAGAAGGGGTTTCGCTTTAT+TGG 0.207337 1_4:+51015705 None:intergenic
CGGGAGTGGGAAGCGTTTCC+GGG 0.277270 1_4:-51015312 Msa0168420:CDS
TCATGCACCGGTTTATCATT+TGG 0.277273 1_4:-51015390 Msa0168420:CDS
AGCGCCTCATCTACTACTTC+TGG 0.285746 1_4:-51012063 Msa0168420:three_prime_UTR
GTGGCTTGTTTGTTGACTAT+TGG 0.286493 1_4:-51011263 Msa0168420:three_prime_UTR
CAAATCAATGACTAAAATTA+AGG 0.288738 1_4:+51012009 None:intergenic
TATAGTAGCTTAGTATGAAT+TGG 0.293266 1_4:+51011457 None:intergenic
CATGCACCGGTTTATCATTT+GGG 0.298977 1_4:-51015389 Msa0168420:CDS
ATTACCTCGACTGACGATAA+TGG 0.304796 1_4:+51012436 None:intergenic
AAAGAATAGCTGAAAGAATC+AGG 0.318251 1_4:-51013948 Msa0168420:CDS
TATGGAAAATTTCTTGTAAA+GGG 0.323225 1_4:-51011864 Msa0168420:three_prime_UTR
TCTCACCTTGGCGCCGGAGG+TGG 0.327568 1_4:-51015416 Msa0168420:CDS
AGTTTCAGGCTTAACTATAC+TGG 0.328183 1_4:+51012146 None:intergenic
TATGGAGGAGGAATAGTTTC+AGG 0.332933 1_4:+51012132 None:intergenic
TTGAAGCCTGATGAAGCTTC+CGG 0.337349 1_4:-51015332 Msa0168420:CDS
CGCACTCTAGGTCGCATTGC+TGG 0.338179 1_4:+51014155 None:intergenic
AGCAGACCCTATCCTGTCTA+TGG 0.355480 1_4:-51011882 Msa0168420:three_prime_UTR
TCTGAGTGACTAGTTGAAAA+TGG 0.367989 1_4:+51015658 None:intergenic
CATCACTAATAAATACTATA+TGG 0.373746 1_4:+51011693 None:intergenic
TGAAGCCTGATGAAGCTTCC+GGG 0.376117 1_4:-51015331 Msa0168420:CDS
CCTCTTCTTGCCCGCACTCT+AGG 0.378408 1_4:+51014143 None:intergenic
ATAGTAGCTTAGTATGAATT+GGG 0.382743 1_4:+51011458 None:intergenic
TTACCTCGACTGACGATAAT+GGG 0.384485 1_4:+51012437 None:intergenic
CATAAAGTTGCATTCAAAGT+AGG 0.388409 1_4:-51011986 Msa0168420:three_prime_UTR
CCACTCCCGGAAGCTTCATC+AGG 0.392070 1_4:+51015326 None:intergenic
GTGGGACCTTGTAAAAGGTT+AGG 0.393557 1_4:-51011723 Msa0168420:three_prime_UTR
AGCTCATGGAAGAAAATGTT+GGG 0.395774 1_4:-51012260 Msa0168420:CDS
CATTGTCGAAGGCATGTCTA+TGG 0.405574 1_4:+51012114 None:intergenic
GGGATGTGGGACCTTGTAAA+AGG 0.408505 1_4:-51011728 Msa0168420:three_prime_UTR
TGACTAAAATTAAGGAGGTT+AGG 0.414380 1_4:+51012017 None:intergenic
GATTTCCTTGAACAAATTCT+CGG 0.419929 1_4:-51015515 Msa0168420:CDS
CTATGGAAAATTTCTTGTAA+AGG 0.421865 1_4:-51011865 Msa0168420:three_prime_UTR
GTTTCGCTTTATTGGATGCT+TGG 0.428370 1_4:+51015713 None:intergenic
CCGTCGGCGGAGGTGAAATT+CGG 0.429325 1_4:+51015488 None:intergenic
TTTGGGTTTGAGCTTGGACC+AGG 0.429629 1_4:-51015372 Msa0168420:CDS
TTATCATTTGGGTTTGAGCT+TGG 0.431085 1_4:-51015378 Msa0168420:CDS
CAGGAAGAAGGAAGTGAGAG+TGG 0.433710 1_4:-51012342 Msa0168420:CDS
CTCACCTTGGCGCCGGAGGT+GGG 0.435501 1_4:-51015415 Msa0168420:CDS
TCACTTGAGAGTTAAGAATC+AGG 0.440998 1_4:+51011380 None:intergenic
GGTCGCATTGCTGGTGGTTG+TGG 0.453211 1_4:+51014164 None:intergenic
CTCAAACCCAAATGATAAAC+CGG 0.453773 1_4:+51015383 None:intergenic
CGGAGGTGGGTTTCATGCAC+CGG 0.455643 1_4:-51015402 Msa0168420:CDS
GCGCCTCATCTACTACTTCT+GGG 0.457754 1_4:-51012062 Msa0168420:three_prime_UTR
GAAGACCGAGAATTTGTTCA+AGG 0.461614 1_4:+51015510 None:intergenic
TGGGAGAAACCAACCAGCTT+GGG 0.463571 1_4:-51012322 Msa0168420:CDS
GGAACAGACAAATAACTTGC+GGG 0.464105 1_4:+51012038 None:intergenic
GGCGACGCTGCCTCTCACCT+TGG 0.464276 1_4:-51015428 Msa0168420:CDS
GACTGATCGAGCTGCCATGC+TGG 0.479757 1_4:-51013150 Msa0168420:CDS
TTGAGCTTGGACCAGGGTAA+AGG 0.479838 1_4:-51015365 Msa0168420:CDS
CCGGAAACGCTTCCCACTCC+CGG 0.481302 1_4:+51015313 None:intergenic
GCCTCTCACCTTGGCGCCGG+AGG 0.483203 1_4:-51015419 Msa0168420:CDS
AAGGTGAGAGGCAGCGTCGC+CGG 0.485809 1_4:+51015430 None:intergenic
TTGTTGACTATTGGATGGAT+TGG 0.486343 1_4:-51011254 Msa0168420:three_prime_UTR
GAGGCGCTCGATGGGACCAC+TGG 0.486947 1_4:+51012078 None:intergenic
TCCCCACAGCATCGCTGAAA+GGG 0.487553 1_4:-51014108 Msa0168420:intron
CTTGTTTGTTGACTATTGGA+TGG 0.488344 1_4:-51011259 Msa0168420:three_prime_UTR
AGCTTAGTATGAATTGGGTT+AGG 0.488605 1_4:+51011463 None:intergenic
ATTGCAGATGCCAGTGAGAT+GGG 0.492955 1_4:+51012195 None:intergenic
TTGGACCAGGGTAAAGGAGG+AGG 0.494681 1_4:-51015359 Msa0168420:CDS
TGTTGAAGTGCAATAGATAA+TGG 0.494811 1_4:-51011650 Msa0168420:three_prime_UTR
CCTGATGAAGCTTCCGGGAG+TGG 0.498744 1_4:-51015326 Msa0168420:CDS
AGCGTCGGTTCCGTCGGCGG+AGG 0.501900 1_4:+51015478 None:intergenic
CCGAATTTCACCTCCGCCGA+CGG 0.502344 1_4:-51015488 Msa0168420:CDS
TTCAGACACAAGACACAAGA+AGG 0.502645 1_4:+51015689 None:intergenic
AGCCGGTGCAGTGGCTCCAC+TGG 0.503330 1_4:-51012470 Msa0168420:CDS
TGGGACCTTGTAAAAGGTTA+GGG 0.504824 1_4:-51011722 Msa0168420:three_prime_UTR
ATGAGTAGATTGGGTGGAGC+CGG 0.504884 1_4:-51012487 Msa0168420:CDS
GAAATCGTCGGCGGGTGTAT+CGG 0.505672 1_4:+51015532 None:intergenic
GGAGCAGCAGGAACTGTAGT+AGG 0.506388 1_4:+51014185 None:intergenic
TCACCCTTTCAGCGATGCTG+TGG 0.507317 1_4:+51014105 None:intergenic
CGGAGAAGCGTCGGTTCCGT+CGG 0.507774 1_4:+51015472 None:intergenic
GCTGGTGGTTGTGGAGCAGC+AGG 0.508567 1_4:+51014173 None:intergenic
AAGCTCATGGAAGAAAATGT+TGG 0.509498 1_4:-51012261 Msa0168420:CDS
GTGGGAGAAACCAACCAGCT+TGG 0.509556 1_4:-51012323 Msa0168420:CDS
CTTACTGATTAAGAGCCACT+TGG 0.510794 1_4:+51011409 None:intergenic
GCTGCCTCTCACCTTGGCGC+CGG 0.514077 1_4:-51015422 Msa0168420:CDS
ACCACTTCTCCCAAGCTGGT+TGG 0.515047 1_4:+51012313 None:intergenic
AGCAGGAACTGTAGTAGGCA+TGG 0.515934 1_4:+51014190 None:intergenic
TTGAGGTGTGTGTATGTGTG+TGG 0.524731 1_4:-51011568 Msa0168420:three_prime_UTR
GACATGCCTTCGACAATGCT+TGG 0.526093 1_4:-51012109 Msa0168420:three_prime_UTR
TATTGCAGATGCCAGTGAGA+TGG 0.526193 1_4:+51012194 None:intergenic
CACCCTTTCAGCGATGCTGT+GGG 0.526622 1_4:+51014106 None:intergenic
AGTTGTCCGACGGTTGCGAT+TGG 0.526806 1_4:+51012169 None:intergenic
AAAACTTGTCAAAGTTGATG+TGG 0.526940 1_4:-51011282 Msa0168420:three_prime_UTR
ACCAACCAGCTTGGGAGAAG+TGG 0.527139 1_4:-51012314 Msa0168420:CDS
GAGTTAAGCTGCAGCATCAT+CGG 0.527777 1_4:+51015452 None:intergenic
TGATGTAAGTGCTTTGATAG+TGG 0.527825 1_4:-51011770 Msa0168420:three_prime_UTR
TAGTAGATGAGGCGCTCGAT+GGG 0.530898 1_4:+51012070 None:intergenic
ATCCCCACAGCATCGCTGAA+AGG 0.531960 1_4:-51014109 Msa0168420:CDS
CGGTGCATGAAACCCACCTC+CGG 0.534315 1_4:+51015403 None:intergenic
TTAGACCACTTCTCCCAAGC+TGG 0.534418 1_4:+51012309 None:intergenic
CTGCATAATGCCCATCTCAC+TGG 0.536918 1_4:-51012205 Msa0168420:CDS
GATGTAAGTGCTTTGATAGT+GGG 0.537670 1_4:-51011769 Msa0168420:three_prime_UTR
CTGATGAAGCTTCCGGGAGT+GGG 0.540261 1_4:-51015325 Msa0168420:CDS
AATGGTTGCTTTAAGAATGC+TGG 0.540682 1_4:-51011632 Msa0168420:three_prime_UTR
AGGAAGAAGGAAGTGAGAGT+GGG 0.541139 1_4:-51012341 Msa0168420:CDS
GATGCAGTTTCTTCAATCAA+AGG 0.543892 1_4:-51012232 Msa0168420:CDS
ACCTCCGGCGCCAAGGTGAG+AGG 0.549716 1_4:+51015418 None:intergenic
CGAAGGCATGTCTATGGAGG+AGG 0.550678 1_4:+51012120 None:intergenic
AGCAATGCGACCTAGAGTGC+GGG 0.553479 1_4:-51014153 Msa0168420:CDS
TGAGGTGTGTGTATGTGTGT+GGG 0.555367 1_4:-51011567 Msa0168420:three_prime_UTR
TACCAGTGGAGCCACTGCAC+CGG 0.556175 1_4:+51012468 None:intergenic
AGTGCGGGCAAGAAGAGGAC+AGG 0.556988 1_4:-51014138 Msa0168420:CDS
AGAAGCGTCGGTTCCGTCGG+CGG 0.557440 1_4:+51015475 None:intergenic
ACGTGCTGTATGGATATGAA+TGG 0.559178 1_4:-51011334 Msa0168420:three_prime_UTR
ATGTAAGTGCTTTGATAGTG+GGG 0.560271 1_4:-51011768 Msa0168420:three_prime_UTR
GAAACCCACCTCCGGCGCCA+AGG 0.561728 1_4:+51015411 None:intergenic
AAAGCAAGTAGCTAAGCTCA+TGG 0.563532 1_4:-51012274 Msa0168420:CDS
ATTCTTAAGACTTCAAGTGA+AGG 0.565023 1_4:-51013105 Msa0168420:intron
TGGGAGAAGTGGTCTAATGA+TGG 0.569736 1_4:-51012303 Msa0168420:CDS
AAGCTACTATAATCAAGTAA+TGG 0.569880 1_4:-51011445 Msa0168420:three_prime_UTR
ATTGGGTGGAGCCGGTGCAG+TGG 0.571354 1_4:-51012479 Msa0168420:CDS
TGGACCAGGGTAAAGGAGGA+GGG 0.575554 1_4:-51015358 Msa0168420:CDS
AGCTTGGACCAGGGTAAAGG+AGG 0.576625 1_4:-51015362 Msa0168420:CDS
CCTAGAGTGCGGGCAAGAAG+AGG 0.582770 1_4:-51014143 Msa0168420:CDS
GCAGGAACTGTAGTAGGCAT+GGG 0.583605 1_4:+51014191 None:intergenic
TGTTCAAGGAAATCGTCGGC+GGG 0.587670 1_4:+51015524 None:intergenic
TATTAGTGATGTAACTCTAG+AGG 0.590895 1_4:-51011681 Msa0168420:three_prime_UTR
GCACGTAAAAGTTGAGAGCA+TGG 0.596826 1_4:+51011351 None:intergenic
ACTCTAGGTCGCATTGCTGG+TGG 0.603281 1_4:+51014158 None:intergenic
TTGAGCATGAGTAGATTGGG+TGG 0.604660 1_4:-51012493 Msa0168420:CDS
CAGCATCATCGGAGAAGCGT+CGG 0.604818 1_4:+51015463 None:intergenic
AAAACCCTCCTCCTTTACCC+TGG 0.605221 1_4:+51015354 None:intergenic
TTACTGATTAAGAGCCACTT+GGG 0.607539 1_4:+51011410 None:intergenic
TTGTATCAACAAGATCCTCC+CGG 0.608383 1_4:+51015294 None:intergenic
GTAGTAGATGAGGCGCTCGA+TGG 0.608554 1_4:+51012069 None:intergenic
AAGAATAGCTGAAAGAATCA+GGG 0.613018 1_4:-51013947 Msa0168420:CDS
TCGTCGGCGGGTGTATCGGA+AGG 0.615492 1_4:+51015536 None:intergenic
TTGGGTTTGAGCTTGGACCA+GGG 0.616126 1_4:-51015371 Msa0168420:CDS
TGCCATGCTGGATGAAATTG+TGG 0.617577 1_4:-51013138 Msa0168420:CDS
ATCAATGACTAAAATTAAGG+AGG 0.621549 1_4:+51012012 None:intergenic
CAGCAATGCGACCTAGAGTG+CGG 0.622938 1_4:-51014154 Msa0168420:CDS
ATCCACAATTTCATCCAGCA+TGG 0.624370 1_4:+51013136 None:intergenic
AGGAACAGACAAATAACTTG+CGG 0.627300 1_4:+51012037 None:intergenic
ACCCTTTCAGCGATGCTGTG+GGG 0.628979 1_4:+51014107 None:intergenic
TGTCGAAGGCATGTCTATGG+AGG 0.632032 1_4:+51012117 None:intergenic
TTGTTCAAGGAAATCGTCGG+CGG 0.636210 1_4:+51015523 None:intergenic
ATGATGCTGCAGCTTAACTC+CGG 0.636220 1_4:-51015449 Msa0168420:CDS
ACTATACTGGAGTTGTCCGA+CGG 0.639351 1_4:+51012159 None:intergenic
TCAGACACAAGACACAAGAA+GGG 0.642723 1_4:+51015690 None:intergenic
TCATGTACCTTGTTGACACT+AGG 0.645489 1_4:+51013907 None:intergenic
GGTCCCAGAAGTAGTAGATG+AGG 0.654289 1_4:+51012059 None:intergenic
GACCTTGTAAAAGGTTAGGG+TGG 0.659952 1_4:-51011719 Msa0168420:three_prime_UTR
GAGTGGGAAGCGTTTCCGGG+AGG 0.662373 1_4:-51015309 Msa0168420:CDS
AATATACCAATCGCAACCGT+CGG 0.663547 1_4:-51012175 Msa0168420:CDS
AATGGGATGTCAGTTACCAG+TGG 0.664418 1_4:+51012454 None:intergenic
ACTTGTTCCTAGTGTCAACA+AGG 0.667852 1_4:-51013914 Msa0168420:intron
CATCCCATTATCGTCAGTCG+AGG 0.668468 1_4:-51012440 Msa0168420:intron
CAGACACAAGACACAAGAAG+GGG 0.669068 1_4:+51015691 None:intergenic
GATGTGCCAAGCATTGTCGA+AGG 0.672703 1_4:+51012103 None:intergenic
GCTCATGGAAGAAAATGTTG+GGG 0.678396 1_4:-51012259 Msa0168420:CDS
AATTTGTTCAAGGAAATCGT+CGG 0.683744 1_4:+51015520 None:intergenic
ATGCTTGGCACATCATCCAG+TGG 0.687924 1_4:-51012094 Msa0168420:three_prime_UTR
GGAACTTGATTGTGCCCAAG+TGG 0.700408 1_4:-51011424 Msa0168420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATTTTTTTTT+TGG - chr1_4:51013730-51013749 Msa0168420:intron 0.0%
!!! TATATATATATTTTTTTTTT+GGG - chr1_4:51013731-51013750 Msa0168420:intron 0.0%
!!! AAACTAATTTTGTTTAATTT+TGG - chr1_4:51011812-51011831 Msa0168420:three_prime_UTR 10.0%
!!! ACGATAAATTTTATTTTTAA+GGG + chr1_4:51012190-51012209 None:intergenic 10.0%
!!! TACGATAAATTTTATTTTTA+AGG + chr1_4:51012191-51012210 None:intergenic 10.0%
!! TGAATAATGATTATATATTA+TGG - chr1_4:51012308-51012327 Msa0168420:CDS 10.0%
!!! TTTTATTTTTATTGCAATAT+AGG - chr1_4:51013116-51013135 Msa0168420:CDS 10.0%
!!! AAATTTTATAATATATTGTC+TGG + chr1_4:51014621-51014640 None:intergenic 10.0%
!!! TTATGTTAAGTTACATTTTT+AGG + chr1_4:51011726-51011745 None:intergenic 15.0%
!!! TAATTTTGTTTAATTTTGGT+GGG - chr1_4:51011816-51011835 Msa0168420:three_prime_UTR 15.0%
!! TAAGATATTAGAAAATACAT+GGG + chr1_4:51012605-51012624 None:intergenic 15.0%
!! TTAAGATATTAGAAAATACA+TGG + chr1_4:51012606-51012625 None:intergenic 15.0%
!!! TTTGTAATCATTATTTTGTT+GGG - chr1_4:51014045-51014064 Msa0168420:intron 15.0%
!!! TATAAAATTTTGTATTGTTC+AGG - chr1_4:51014631-51014650 Msa0168420:intron 15.0%
!!! TTTTCCTTTTTGTATAAAAA+AGG - chr1_4:51015181-51015200 Msa0168420:intron 15.0%
!! TGTTTATTCAAAAAAGTAAT+TGG - chr1_4:51015455-51015474 Msa0168420:CDS 15.0%
!!! TTTTCTTTACTTTTCAGTTA+TGG - chr1_4:51011425-51011444 Msa0168420:three_prime_UTR 20.0%
!!! CTAATTTTGTTTAATTTTGG+TGG - chr1_4:51011815-51011834 Msa0168420:three_prime_UTR 20.0%
!! TTATTCATTCATCTTTAAGT+TGG + chr1_4:51012295-51012314 None:intergenic 20.0%
!! ATTATATATTATGGTATGTG+TGG - chr1_4:51012317-51012336 Msa0168420:CDS 20.0%
!! TTATATATTATGGTATGTGT+GGG - chr1_4:51012318-51012337 Msa0168420:CDS 20.0%
!!! TTTTCTGCTATATTTACATT+AGG + chr1_4:51012404-51012423 None:intergenic 20.0%
!!! ATTGGTATTTTATGTAATCT+TGG - chr1_4:51013326-51013345 Msa0168420:intron 20.0%
!!! AACTGATTTTGGTATTAAAT+TGG + chr1_4:51013495-51013514 None:intergenic 20.0%
!!! ATGTTTATTACAATTAGTCT+GGG - chr1_4:51013595-51013614 Msa0168420:intron 20.0%
!!! TATATTTTTTTTTTGGGACT+TGG - chr1_4:51013737-51013756 Msa0168420:intron 20.0%
!!! ATTTGATTTCTATCTTTGTT+AGG - chr1_4:51013941-51013960 Msa0168420:CDS 20.0%
!!! CTTTGTAATCATTATTTTGT+TGG - chr1_4:51014044-51014063 Msa0168420:intron 20.0%
!! AATAAAATCAAATGGCTAAT+GGG + chr1_4:51014116-51014135 None:intergenic 20.0%
!! AATTGTATCTTAATATTCAC+CGG + chr1_4:51014147-51014166 None:intergenic 20.0%
!!! TTTTGTTGAAAACTAGATAT+TGG + chr1_4:51014302-51014321 None:intergenic 20.0%
!! CAAATCAATGACTAAAATTA+AGG + chr1_4:51014986-51015005 None:intergenic 20.0%
!! CAAAAAAAAAGAAAAGACTA+TGG + chr1_4:51015035-51015054 None:intergenic 20.0%
!!! TAGTCTTTTCTTTTTTTTTG+CGG - chr1_4:51015035-51015054 Msa0168420:intron 20.0%
!! TATGGAAAATTTCTTGTAAA+GGG - chr1_4:51015128-51015147 Msa0168420:intron 20.0%
!! CATCACTAATAAATACTATA+TGG + chr1_4:51015302-51015321 None:intergenic 20.0%
! ATAGTGTATTACTATTTACC+TGG - chr1_4:51011884-51011903 Msa0168420:three_prime_UTR 25.0%
! TAGTGTATTACTATTTACCT+GGG - chr1_4:51011885-51011904 Msa0168420:three_prime_UTR 25.0%
! GAAAACATTTCAGACTTTAA+TGG - chr1_4:51012020-51012039 Msa0168420:three_prime_UTR 25.0%
!!! TGAATTGTTATTGGTTTTTG+TGG - chr1_4:51012214-51012233 Msa0168420:CDS 25.0%
!!! GAATTGTTATTGGTTTTTGT+GGG - chr1_4:51012215-51012234 Msa0168420:CDS 25.0%
!!! AAATATAGCAGAAAAGTACT+TGG - chr1_4:51012409-51012428 Msa0168420:intron 25.0%
! TAAGACAAAAAAATGCTACT+TGG + chr1_4:51012744-51012763 None:intergenic 25.0%
! CGAATGATTAACATTTAATG+AGG - chr1_4:51012933-51012952 Msa0168420:intron 25.0%
!!! ACACAATCTAAAACTGATTT+TGG + chr1_4:51013506-51013525 None:intergenic 25.0%
! CATGTTTATTACAATTAGTC+TGG - chr1_4:51013594-51013613 Msa0168420:intron 25.0%
!! TCATCTTTTAACCTTTTGAT+AGG + chr1_4:51013628-51013647 None:intergenic 25.0%
! ATGGAAATATTATACAGAAG+AGG + chr1_4:51013789-51013808 None:intergenic 25.0%
!!! ATACACAGTTTTAGATACAA+TGG + chr1_4:51013808-51013827 None:intergenic 25.0%
! CTTTGTTAGGTCTATAATTA+AGG - chr1_4:51013954-51013973 Msa0168420:CDS 25.0%
! GAATAAAATCAAATGGCTAA+TGG + chr1_4:51014117-51014136 None:intergenic 25.0%
! TCATCGTGAATAAAATCAAA+TGG + chr1_4:51014124-51014143 None:intergenic 25.0%
! CATTGAAAATTAGACCTATT+TGG + chr1_4:51014265-51014284 None:intergenic 25.0%
! GTTGCTGACAAATTTAAATT+TGG + chr1_4:51014421-51014440 None:intergenic 25.0%
! AATTATTCAAATCATGTCGT+TGG - chr1_4:51014576-51014595 Msa0168420:intron 25.0%
! ATCAATGACTAAAATTAAGG+AGG + chr1_4:51014983-51015002 None:intergenic 25.0%
! CTATGGAAAATTTCTTGTAA+AGG - chr1_4:51015127-51015146 Msa0168420:intron 25.0%
!!! CCATCCTTTTTTATACAAAA+AGG + chr1_4:51015188-51015207 None:intergenic 25.0%
!! CCTTTTTGTATAAAAAAGGA+TGG - chr1_4:51015185-51015204 Msa0168420:intron 25.0%
!! TTTTGTATAAAAAAGGATGG+AGG - chr1_4:51015188-51015207 Msa0168420:intron 25.0%
!!! TGATGCTTTTTGTTTATTTG+AGG - chr1_4:51015407-51015426 Msa0168420:CDS 25.0%
!! AATTGGACCTCTTTTTATAA+TGG - chr1_4:51015472-51015491 Msa0168420:CDS 25.0%
!! ATTGGACCTCTTTTTATAAT+GGG - chr1_4:51015473-51015492 Msa0168420:CDS 25.0%
! ATAGTAGCTTAGTATGAATT+GGG + chr1_4:51015537-51015556 None:intergenic 25.0%
! TATAGTAGCTTAGTATGAAT+TGG + chr1_4:51015538-51015557 None:intergenic 25.0%
! AAGCTACTATAATCAAGTAA+TGG - chr1_4:51015547-51015566 Msa0168420:CDS 25.0%
! AATTTGTTCAAGGAAATCGT+CGG + chr1_4:51011475-51011494 None:intergenic 30.0%
GATTTCCTTGAACAAATTCT+CGG - chr1_4:51011477-51011496 Msa0168420:three_prime_UTR 30.0%
ATCATCTGTTTAAGCTGAAT+TGG - chr1_4:51011843-51011862 Msa0168420:three_prime_UTR 30.0%
! AATAATTATGCCAGCTTTGT+TGG - chr1_4:51011966-51011985 Msa0168420:three_prime_UTR 30.0%
AAACTAGCAGTAAGTAAGAA+TGG - chr1_4:51012050-51012069 Msa0168420:three_prime_UTR 30.0%
!! AAATAACTTGTTACTTCACC+AGG + chr1_4:51012129-51012148 None:intergenic 30.0%
TGGTGAAGTAACAAGTTATT+TGG - chr1_4:51012128-51012147 Msa0168420:exon 30.0%
GGTGAAGTAACAAGTTATTT+GGG - chr1_4:51012129-51012148 Msa0168420:exon 30.0%
ATCGTAGCATGAATTGTTAT+TGG - chr1_4:51012205-51012224 Msa0168420:CDS 30.0%
TAAAGATCATACACCAAGTT+AGG + chr1_4:51012259-51012278 None:intergenic 30.0%
GAACTAGCAATAAGTAAGAA+TGG + chr1_4:51012472-51012491 None:intergenic 30.0%
GAAAACATTTCAGACTTTGA+TGG + chr1_4:51012502-51012521 None:intergenic 30.0%
AAGGCAGAAAGGTAAATATA+AGG + chr1_4:51012694-51012713 None:intergenic 30.0%
TATATTTACCTTTCTGCCTT+TGG - chr1_4:51012694-51012713 Msa0168420:intron 30.0%
ATATTTACCTTTCTGCCTTT+GGG - chr1_4:51012695-51012714 Msa0168420:intron 30.0%
! AAGTTTTTGCAGACTTTTCA+TGG - chr1_4:51012774-51012793 Msa0168420:intron 30.0%
! AGTTTTTGCAGACTTTTCAT+GGG - chr1_4:51012775-51012794 Msa0168420:intron 30.0%
AAATCACATTGCTAATTCCT+TGG - chr1_4:51012959-51012978 Msa0168420:intron 30.0%
AAAGAATAGCTGAAAGAATC+AGG - chr1_4:51013044-51013063 Msa0168420:intron 30.0%
AAGAATAGCTGAAAGAATCA+GGG - chr1_4:51013045-51013064 Msa0168420:intron 30.0%
TAAGATACGGAGACAAAATT+TGG - chr1_4:51013214-51013233 Msa0168420:intron 30.0%
!!! TTTCAGCACTGTTTTTGTTT+CGG + chr1_4:51013260-51013279 None:intergenic 30.0%
! AACAAAAACAGTGCTGAAAT+TGG - chr1_4:51013261-51013280 Msa0168420:intron 30.0%
AATTAAATCATCCTTCGAGT+GGG + chr1_4:51013427-51013446 None:intergenic 30.0%
! TTGTGTTTGAGTTTGGAAAA+TGG - chr1_4:51013455-51013474 Msa0168420:intron 30.0%
AAATTTCATGTTCGCCAAAT+CGG + chr1_4:51013673-51013692 None:intergenic 30.0%
!! TTCTGAAGTATAAAGTCTTC+TGG - chr1_4:51013699-51013718 Msa0168420:intron 30.0%
ATTCTTAAGACTTCAAGTGA+AGG - chr1_4:51013887-51013906 Msa0168420:intron 30.0%
GAAATCAAATGTGAAATCCA+TGG + chr1_4:51013931-51013950 None:intergenic 30.0%
!! TAATTAAGGTTAGCTTGAAC+TGG - chr1_4:51013968-51013987 Msa0168420:intron 30.0%
TAATGATTACAAAGAGTGAG+AGG + chr1_4:51014038-51014057 None:intergenic 30.0%
!! TTATTTTGTTGGGATTCAAC+TGG - chr1_4:51014055-51014074 Msa0168420:intron 30.0%
! TTGATTTTATTCACGATGAC+CGG - chr1_4:51014125-51014144 Msa0168420:CDS 30.0%
TCGGATAGTTGGATATTATT+GGG + chr1_4:51014210-51014229 None:intergenic 30.0%
TTCGGATAGTTGGATATTAT+TGG + chr1_4:51014211-51014230 None:intergenic 30.0%
AATAATATCCAACTATCCGA+AGG - chr1_4:51014210-51014229 Msa0168420:intron 30.0%
ATAATATCCAACTATCCGAA+GGG - chr1_4:51014211-51014230 Msa0168420:intron 30.0%
! TGTTCTTTTGTCTATCTTTC+AGG - chr1_4:51014474-51014493 Msa0168420:intron 30.0%
! TTTTGTATTGTTCAGGAAGA+AGG - chr1_4:51014638-51014657 Msa0168420:intron 30.0%
TGACTAAAATTAAGGAGGTT+AGG + chr1_4:51014978-51014997 None:intergenic 30.0%
CATAAAGTTGCATTCAAAGT+AGG - chr1_4:51015006-51015025 Msa0168420:intron 30.0%
! TATCAGCTTTTGTCAATACA+GGG - chr1_4:51015061-51015080 Msa0168420:intron 30.0%
! AATTTTCCATAGACAGGATA+GGG + chr1_4:51015119-51015138 None:intergenic 30.0%
! AAATTTTCCATAGACAGGAT+AGG + chr1_4:51015120-51015139 None:intergenic 30.0%
! ACAAGAAATTTTCCATAGAC+AGG + chr1_4:51015125-51015144 None:intergenic 30.0%
!!! GGGTTTTTAGTTTTTGTAGT+GGG - chr1_4:51015244-51015263 Msa0168420:intron 30.0%
TATTAGTGATGTAACTCTAG+AGG - chr1_4:51015311-51015330 Msa0168420:CDS 30.0%
TGTTGAAGTGCAATAGATAA+TGG - chr1_4:51015342-51015361 Msa0168420:CDS 30.0%
!! AAAGCATCATCATTTTCTTC+TGG + chr1_4:51015396-51015415 None:intergenic 30.0%
!! AAAACTTGTCAAAGTTGATG+TGG - chr1_4:51015710-51015729 Msa0168420:five_prime_UTR 30.0%
! TCTGAGTGACTAGTTGAAAA+TGG + chr1_4:51011337-51011356 None:intergenic 35.0%
CTCAAACCCAAATGATAAAC+CGG + chr1_4:51011612-51011631 None:intergenic 35.0%
! TTATCATTTGGGTTTGAGCT+TGG - chr1_4:51011614-51011633 Msa0168420:three_prime_UTR 35.0%
TGTTTAAGCTGAATTGGACT+TGG - chr1_4:51011849-51011868 Msa0168420:three_prime_UTR 35.0%
!!! TTGTTATTGGTTTTTGTGGG+TGG - chr1_4:51012218-51012237 Msa0168420:CDS 35.0%
! TTTTTGTGGGTGGTTCATTT+TGG - chr1_4:51012228-51012247 Msa0168420:CDS 35.0%
TATTATGGTATGTGTGGGAT+TGG - chr1_4:51012323-51012342 Msa0168420:CDS 35.0%
TACTGTTGGCAATGTCTAAA+CGG + chr1_4:51012567-51012586 None:intergenic 35.0%
CATTAGCATTAAGCATACCA+AGG + chr1_4:51012979-51012998 None:intergenic 35.0%
CTTCAGAGTAAACACGAAAA+GGG + chr1_4:51013189-51013208 None:intergenic 35.0%
ACTTCAGAGTAAACACGAAA+AGG + chr1_4:51013190-51013209 None:intergenic 35.0%
!! CTCTGAAGTGAGATAAGATA+CGG - chr1_4:51013201-51013220 Msa0168420:intron 35.0%
!!! TTCAGCACTGTTTTTGTTTC+GGG + chr1_4:51013259-51013278 None:intergenic 35.0%
AGTATTGTTCAATGCGTACT+TGG - chr1_4:51013351-51013370 Msa0168420:intron 35.0%
GAATTAAATCATCCTTCGAG+TGG + chr1_4:51013428-51013447 None:intergenic 35.0%
! TAACTCGTTGTGTTTGAGTT+TGG - chr1_4:51013448-51013467 Msa0168420:intron 35.0%
! ACCTCTCATGTTCTGTTTTA+CGG - chr1_4:51013561-51013580 Msa0168420:intron 35.0%
TGGGAAACAATCCTATCAAA+AGG - chr1_4:51013614-51013633 Msa0168420:intron 35.0%
!!! TTTTTTTTGGGACTTGGTTG+TGG - chr1_4:51013743-51013762 Msa0168420:intron 35.0%
!! GTCAAAAGGCATTGGTAAAT+AGG + chr1_4:51014016-51014035 None:intergenic 35.0%
TGGTTAAAGTAGCAACAACA+TGG + chr1_4:51014187-51014206 None:intergenic 35.0%
GATAGTTGGATATTATTGGG+TGG + chr1_4:51014207-51014226 None:intergenic 35.0%
TCGATTGTCTTTCACCAAAT+AGG - chr1_4:51014248-51014267 Msa0168420:intron 35.0%
TGATTTCTCTAGACACATGT+GGG - chr1_4:51014338-51014357 Msa0168420:intron 35.0%
TGTACATGAAAGTGAAAGCA+AGG - chr1_4:51014382-51014401 Msa0168420:intron 35.0%
!! GTTTTGAGCATGAGTAGATT+GGG - chr1_4:51014496-51014515 Msa0168420:intron 35.0%
AAGCTCATGGAAGAAAATGT+TGG - chr1_4:51014731-51014750 Msa0168420:intron 35.0%
AGCTCATGGAAGAAAATGTT+GGG - chr1_4:51014732-51014751 Msa0168420:intron 35.0%
GATGCAGTTTCTTCAATCAA+AGG - chr1_4:51014760-51014779 Msa0168420:intron 35.0%
AGTTTCAGGCTTAACTATAC+TGG + chr1_4:51014849-51014868 None:intergenic 35.0%
AGGAACAGACAAATAACTTG+CGG + chr1_4:51014958-51014977 None:intergenic 35.0%
! GTATCAGCTTTTGTCAATAC+AGG - chr1_4:51015060-51015079 Msa0168420:intron 35.0%
TAAAAAAGGATGGAGGTTAG+TGG - chr1_4:51015195-51015214 Msa0168420:intron 35.0%
TGATGTAAGTGCTTTGATAG+TGG - chr1_4:51015222-51015241 Msa0168420:intron 35.0%
! GATGTAAGTGCTTTGATAGT+GGG - chr1_4:51015223-51015242 Msa0168420:intron 35.0%
!! ATGTAAGTGCTTTGATAGTG+GGG - chr1_4:51015224-51015243 Msa0168420:intron 35.0%
!!! GGGGTTTTTAGTTTTTGTAG+TGG - chr1_4:51015243-51015262 Msa0168420:intron 35.0%
!! TTAGTTTTTGTAGTGGGATG+TGG - chr1_4:51015250-51015269 Msa0168420:intron 35.0%
!! TAGTTTTTGTAGTGGGATGT+GGG - chr1_4:51015251-51015270 Msa0168420:intron 35.0%
!! AATGGTTGCTTTAAGAATGC+TGG - chr1_4:51015360-51015379 Msa0168420:CDS 35.0%
TCTCCTCCCATTATAAAAAG+AGG + chr1_4:51015482-51015501 None:intergenic 35.0%
!! TTTTATAATGGGAGGAGAGA+TGG - chr1_4:51015484-51015503 Msa0168420:CDS 35.0%
AGCTTAGTATGAATTGGGTT+AGG + chr1_4:51015532-51015551 None:intergenic 35.0%
! TTACTGATTAAGAGCCACTT+GGG + chr1_4:51015585-51015604 None:intergenic 35.0%
TCACTTGAGAGTTAAGAATC+AGG + chr1_4:51015615-51015634 None:intergenic 35.0%
! CTTGTTTGTTGACTATTGGA+TGG - chr1_4:51015733-51015752 Msa0168420:five_prime_UTR 35.0%
! TTGTTGACTATTGGATGGAT+TGG - chr1_4:51015738-51015757 Msa0168420:five_prime_UTR 35.0%
! GTTTCGCTTTATTGGATGCT+TGG + chr1_4:51011282-51011301 None:intergenic 40.0%
AAGAAGGGGTTTCGCTTTAT+TGG + chr1_4:51011290-51011309 None:intergenic 40.0%
TCAGACACAAGACACAAGAA+GGG + chr1_4:51011305-51011324 None:intergenic 40.0%
TTCAGACACAAGACACAAGA+AGG + chr1_4:51011306-51011325 None:intergenic 40.0%
! GAAGACCGAGAATTTGTTCA+AGG + chr1_4:51011485-51011504 None:intergenic 40.0%
!! TCATGCACCGGTTTATCATT+TGG - chr1_4:51011602-51011621 Msa0168420:three_prime_UTR 40.0%
!! CATGCACCGGTTTATCATTT+GGG - chr1_4:51011603-51011622 Msa0168420:three_prime_UTR 40.0%
TTGTATCAACAAGATCCTCC+CGG + chr1_4:51011701-51011720 None:intergenic 40.0%
!! AGCTGAATTGGACTTGGTTT+TGG - chr1_4:51011855-51011874 Msa0168420:three_prime_UTR 40.0%
TTACTATTTACCTGGGTCTC+AGG - chr1_4:51011892-51011911 Msa0168420:three_prime_UTR 40.0%
TAAGCTACTACCAACAAAGC+TGG + chr1_4:51011979-51011998 None:intergenic 40.0%
TAGACATTGCCAACAGTACT+TGG - chr1_4:51012569-51012588 Msa0168420:intron 40.0%
! AAAACGACTCCAAGTACTGT+TGG + chr1_4:51012581-51012600 None:intergenic 40.0%
!!! TCTGCGCAACTGTTTTTGAA+CGG + chr1_4:51013023-51013042 None:intergenic 40.0%
ACTTGTTCCTAGTGTCAACA+AGG - chr1_4:51013078-51013097 Msa0168420:intron 40.0%
TCATGTACCTTGTTGACACT+AGG + chr1_4:51013088-51013107 None:intergenic 40.0%
TCTATAGAACTTGCGCAATC+AGG - chr1_4:51013154-51013173 Msa0168420:intron 40.0%
! TGCTGAAATTGGAGCTTTGT+GGG - chr1_4:51013272-51013291 Msa0168420:intron 40.0%
!! GACTGATTTTCCTTGTTGCT+AGG - chr1_4:51013302-51013321 Msa0168420:intron 40.0%
! TTTTCCTTGTTGCTAGGCAT+TGG - chr1_4:51013308-51013327 Msa0168420:intron 40.0%
AATACCAATGCCTAGCAACA+AGG + chr1_4:51013315-51013334 None:intergenic 40.0%
! CTATAGTTCTACACAGACAC+TGG - chr1_4:51013389-51013408 Msa0168420:intron 40.0%
! ACATGAGAGGTATGCTTATC+TGG + chr1_4:51013552-51013571 None:intergenic 40.0%
ACCGTAAAACAGAACATGAG+AGG + chr1_4:51013565-51013584 None:intergenic 40.0%
TCTGCATATAGTCTCCGATT+TGG - chr1_4:51013656-51013675 Msa0168420:intron 40.0%
ATCCACAATTTCATCCAGCA+TGG + chr1_4:51013859-51013878 None:intergenic 40.0%
ACAAAGAGTGAGAGGTCAAA+AGG + chr1_4:51014030-51014049 None:intergenic 40.0%
!!! CTGAGATGCCATTTTGGTAT+GGG - chr1_4:51014089-51014108 Msa0168420:intron 40.0%
! TAATGGGTCCCATACCAAAA+TGG + chr1_4:51014100-51014119 None:intergenic 40.0%
CATGTGTCTAGAGAAATCAC+TGG + chr1_4:51014337-51014356 None:intergenic 40.0%
GTGATTTCTCTAGACACATG+TGG - chr1_4:51014337-51014356 Msa0168420:intron 40.0%
!!! GGTTTTGAGCATGAGTAGAT+TGG - chr1_4:51014495-51014514 Msa0168420:intron 40.0%
TTACCTCGACTGACGATAAT+GGG + chr1_4:51014558-51014577 None:intergenic 40.0%
ATTACCTCGACTGACGATAA+TGG + chr1_4:51014559-51014578 None:intergenic 40.0%
!! GAGCTTAGCTACTTGCTTTT+CGG + chr1_4:51014717-51014736 None:intergenic 40.0%
AAAGCAAGTAGCTAAGCTCA+TGG - chr1_4:51014718-51014737 Msa0168420:intron 40.0%
GCTCATGGAAGAAAATGTTG+GGG - chr1_4:51014733-51014752 Msa0168420:intron 40.0%
AATATACCAATCGCAACCGT+CGG - chr1_4:51014817-51014836 Msa0168420:intron 40.0%
TATGGAGGAGGAATAGTTTC+AGG + chr1_4:51014863-51014882 None:intergenic 40.0%
! GGAACAGACAAATAACTTGC+GGG + chr1_4:51014957-51014976 None:intergenic 40.0%
!!! AGGGTCTGCTTGCATTTTTT+AGG + chr1_4:51015100-51015119 None:intergenic 40.0%
TGGGACCTTGTAAAAGGTTA+GGG - chr1_4:51015270-51015289 Msa0168420:intron 40.0%
! TACCACCCTAACCTTTTACA+AGG + chr1_4:51015278-51015297 None:intergenic 40.0%
!! GGACCTCTTTTTATAATGGG+AGG - chr1_4:51015476-51015495 Msa0168420:CDS 40.0%
! CTTACTGATTAAGAGCCACT+TGG + chr1_4:51015586-51015605 None:intergenic 40.0%
! CTCAACTTTTACGTGCTGTA+TGG - chr1_4:51015648-51015667 Msa0168420:five_prime_UTR 40.0%
ACGTGCTGTATGGATATGAA+TGG - chr1_4:51015658-51015677 Msa0168420:five_prime_UTR 40.0%
!! GTGGCTTGTTTGTTGACTAT+TGG - chr1_4:51015729-51015748 Msa0168420:five_prime_UTR 40.0%
CAGACACAAGACACAAGAAG+GGG + chr1_4:51011304-51011323 None:intergenic 45.0%
TTGTTCAAGGAAATCGTCGG+CGG + chr1_4:51011472-51011491 None:intergenic 45.0%
GAGTTAAGCTGCAGCATCAT+CGG + chr1_4:51011543-51011562 None:intergenic 45.0%
ATGATGCTGCAGCTTAACTC+CGG - chr1_4:51011543-51011562 Msa0168420:three_prime_UTR 45.0%
TTGAAGCCTGATGAAGCTTC+CGG - chr1_4:51011660-51011679 Msa0168420:three_prime_UTR 45.0%
GTCTCAGGTTTGATTCTCCT+CGG - chr1_4:51011907-51011926 Msa0168420:three_prime_UTR 45.0%
!! ATTCTCCTCGGTGCCAATTT+GGG - chr1_4:51011919-51011938 Msa0168420:three_prime_UTR 45.0%
CTAAATTCGCCCACCCAAAT+TGG + chr1_4:51011935-51011954 None:intergenic 45.0%
CATTCTTCAATTCAGCTGCC+TGG - chr1_4:51012108-51012127 Msa0168420:three_prime_UTR 45.0%
AGGGTCATGCTATGACAAGT+TGG + chr1_4:51012171-51012190 None:intergenic 45.0%
!!! CATTTTGGTAGCGCCTAACT+TGG - chr1_4:51012243-51012262 Msa0168420:CDS 45.0%
GAGCTACTACCAACTGAGAA+TGG - chr1_4:51012541-51012560 Msa0168420:intron 45.0%
TCTAAACGGCCATTCTCAGT+TGG + chr1_4:51012553-51012572 None:intergenic 45.0%
TTTACCTTTCTGCCTTTGGG+AGG - chr1_4:51012698-51012717 Msa0168420:intron 45.0%
AGAACTTGCGCAATCAGGTA+AGG - chr1_4:51013159-51013178 Msa0168420:intron 45.0%
GTGCTGAAATTGGAGCTTTG+TGG - chr1_4:51013271-51013290 Msa0168420:intron 45.0%
! GCTGAAATTGGAGCTTTGTG+GGG - chr1_4:51013273-51013292 Msa0168420:intron 45.0%
! TGAGAGGTATGCTTATCTGG+AGG + chr1_4:51013549-51013568 None:intergenic 45.0%
GTGGTCTGCTGTATTTCTCT+TGG - chr1_4:51013762-51013781 Msa0168420:intron 45.0%
TGCCATGCTGGATGAAATTG+TGG - chr1_4:51013854-51013873 Msa0168420:intron 45.0%
! TAGTGCTTTTGTGAGCTCCA+TGG - chr1_4:51013911-51013930 Msa0168420:intron 45.0%
! AGTGAGAGGTCAAAAGGCAT+TGG + chr1_4:51014024-51014043 None:intergenic 45.0%
CCATACCAAAATGGCATCTC+AGG + chr1_4:51014091-51014110 None:intergenic 45.0%
!!! CCTGAGATGCCATTTTGGTA+TGG - chr1_4:51014088-51014107 Msa0168420:intron 45.0%
GTGAAAGCAAGGCTCTTCAT+TGG - chr1_4:51014393-51014412 Msa0168420:intron 45.0%
TTGAGCATGAGTAGATTGGG+TGG - chr1_4:51014499-51014518 Msa0168420:intron 45.0%
AATGGGATGTCAGTTACCAG+TGG + chr1_4:51014541-51014560 None:intergenic 45.0%
AGGAAGAAGGAAGTGAGAGT+GGG - chr1_4:51014651-51014670 Msa0168420:intron 45.0%
TGGGAGAAGTGGTCTAATGA+TGG - chr1_4:51014689-51014708 Msa0168420:intron 45.0%
ATTGCAGATGCCAGTGAGAT+GGG + chr1_4:51014800-51014819 None:intergenic 45.0%
TATTGCAGATGCCAGTGAGA+TGG + chr1_4:51014801-51014820 None:intergenic 45.0%
ACTATACTGGAGTTGTCCGA+CGG + chr1_4:51014836-51014855 None:intergenic 45.0%
! CATTGTCGAAGGCATGTCTA+TGG + chr1_4:51014881-51014900 None:intergenic 45.0%
GTGGGACCTTGTAAAAGGTT+AGG - chr1_4:51015269-51015288 Msa0168420:intron 45.0%
GACCTTGTAAAAGGTTAGGG+TGG - chr1_4:51015273-51015292 Msa0168420:intron 45.0%
TTGAGGTGTGTGTATGTGTG+TGG - chr1_4:51015424-51015443 Msa0168420:CDS 45.0%
TGAGGTGTGTGTATGTGTGT+GGG - chr1_4:51015425-51015444 Msa0168420:CDS 45.0%
GCACGTAAAAGTTGAGAGCA+TGG + chr1_4:51015644-51015663 None:intergenic 45.0%
TGTTCAAGGAAATCGTCGGC+GGG + chr1_4:51011471-51011490 None:intergenic 50.0%
! TTTGGGTTTGAGCTTGGACC+AGG - chr1_4:51011620-51011639 Msa0168420:three_prime_UTR 50.0%
TTGGGTTTGAGCTTGGACCA+GGG - chr1_4:51011621-51011640 Msa0168420:three_prime_UTR 50.0%
TTGAGCTTGGACCAGGGTAA+AGG - chr1_4:51011627-51011646 Msa0168420:three_prime_UTR 50.0%
AAAACCCTCCTCCTTTACCC+TGG + chr1_4:51011641-51011660 None:intergenic 50.0%
TGAAGCCTGATGAAGCTTCC+GGG - chr1_4:51011661-51011680 Msa0168420:three_prime_UTR 50.0%
GAGAATCAAACCTGAGACCC+AGG + chr1_4:51011905-51011924 None:intergenic 50.0%
!! GATTCTCCTCGGTGCCAATT+TGG - chr1_4:51011918-51011937 Msa0168420:three_prime_UTR 50.0%
! ATGGTATGTGTGGGATTGGC+TGG - chr1_4:51012327-51012346 Msa0168420:CDS 50.0%
!! AGGTCCTGGAGAAGTGTTGT+TGG - chr1_4:51012718-51012737 Msa0168420:intron 50.0%
TTGGCCAACAACACTTCTCC+AGG + chr1_4:51012725-51012744 None:intergenic 50.0%
GCAGGAACTGTAGTAGGCAT+GGG + chr1_4:51012804-51012823 None:intergenic 50.0%
AGCAGGAACTGTAGTAGGCA+TGG + chr1_4:51012805-51012824 None:intergenic 50.0%
CTTGCGCAATCAGGTAAGGA+TGG - chr1_4:51013163-51013182 Msa0168420:intron 50.0%
CATGTCTGTTTCCCACTCGA+AGG - chr1_4:51013413-51013432 Msa0168420:intron 50.0%
!! GCGATCCTGAGATGCCATTT+TGG - chr1_4:51014083-51014102 Msa0168420:intron 50.0%
GTTGAAGCCCTTCGGATAGT+TGG + chr1_4:51014221-51014240 None:intergenic 50.0%
TATCCGAAGGGCTTCAACTG+TGG - chr1_4:51014223-51014242 Msa0168420:intron 50.0%
AGTCCACAGTTGAAGCCCTT+CGG + chr1_4:51014229-51014248 None:intergenic 50.0%
ATGAGTAGATTGGGTGGAGC+CGG - chr1_4:51014505-51014524 Msa0168420:intron 50.0%
CATCCCATTATCGTCAGTCG+AGG - chr1_4:51014552-51014571 Msa0168420:intron 50.0%
CAGGAAGAAGGAAGTGAGAG+TGG - chr1_4:51014650-51014669 Msa0168420:intron 50.0%
TGGGAGAAACCAACCAGCTT+GGG - chr1_4:51014670-51014689 Msa0168420:intron 50.0%
TTAGACCACTTCTCCCAAGC+TGG + chr1_4:51014686-51014705 None:intergenic 50.0%
CTGCATAATGCCCATCTCAC+TGG - chr1_4:51014787-51014806 Msa0168420:intron 50.0%
! TGTCGAAGGCATGTCTATGG+AGG + chr1_4:51014878-51014897 None:intergenic 50.0%
GACATGCCTTCGACAATGCT+TGG - chr1_4:51014883-51014902 Msa0168420:intron 50.0%
! GATGTGCCAAGCATTGTCGA+AGG + chr1_4:51014892-51014911 None:intergenic 50.0%
ATGCTTGGCACATCATCCAG+TGG - chr1_4:51014898-51014917 Msa0168420:intron 50.0%
! TAGTAGATGAGGCGCTCGAT+GGG + chr1_4:51014925-51014944 None:intergenic 50.0%
AGCGCCTCATCTACTACTTC+TGG - chr1_4:51014929-51014948 Msa0168420:intron 50.0%
GCGCCTCATCTACTACTTCT+GGG - chr1_4:51014930-51014949 Msa0168420:intron 50.0%
GGTCCCAGAAGTAGTAGATG+AGG + chr1_4:51014936-51014955 None:intergenic 50.0%
AGCAGACCCTATCCTGTCTA+TGG - chr1_4:51015110-51015129 Msa0168420:intron 50.0%
GGGATGTGGGACCTTGTAAA+AGG - chr1_4:51015264-51015283 Msa0168420:intron 50.0%
GGAACTTGATTGTGCCCAAG+TGG - chr1_4:51015568-51015587 Msa0168420:exon 50.0%
GAAATCGTCGGCGGGTGTAT+CGG + chr1_4:51011463-51011482 None:intergenic 55.0%
! CAGCATCATCGGAGAAGCGT+CGG + chr1_4:51011532-51011551 None:intergenic 55.0%
AGCTTGGACCAGGGTAAAGG+AGG - chr1_4:51011630-51011649 Msa0168420:three_prime_UTR 55.0%
TTGGACCAGGGTAAAGGAGG+AGG - chr1_4:51011633-51011652 Msa0168420:three_prime_UTR 55.0%
TGGACCAGGGTAAAGGAGGA+GGG - chr1_4:51011634-51011653 Msa0168420:three_prime_UTR 55.0%
CTGATGAAGCTTCCGGGAGT+GGG - chr1_4:51011667-51011686 Msa0168420:three_prime_UTR 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1_4:51011923-51011942 Msa0168420:three_prime_UTR 55.0%
AGGACCTCCCAAAGGCAGAA+AGG + chr1_4:51012705-51012724 None:intergenic 55.0%
! TTTCTGCCTTTGGGAGGTCC+TGG - chr1_4:51012704-51012723 Msa0168420:intron 55.0%
ACTTCTCCAGGACCTCCCAA+AGG + chr1_4:51012713-51012732 None:intergenic 55.0%
GGAGCAGCAGGAACTGTAGT+AGG + chr1_4:51012810-51012829 None:intergenic 55.0%
ACTCTAGGTCGCATTGCTGG+TGG + chr1_4:51012837-51012856 None:intergenic 55.0%
CAGCAATGCGACCTAGAGTG+CGG - chr1_4:51012838-51012857 Msa0168420:intron 55.0%
AGCAATGCGACCTAGAGTGC+GGG - chr1_4:51012839-51012858 Msa0168420:intron 55.0%
ATCCCCACAGCATCGCTGAA+AGG - chr1_4:51012883-51012902 Msa0168420:intron 55.0%
TCCCCACAGCATCGCTGAAA+GGG - chr1_4:51012884-51012903 Msa0168420:intron 55.0%
ACCCTTTCAGCGATGCTGTG+GGG + chr1_4:51012888-51012907 None:intergenic 55.0%
CACCCTTTCAGCGATGCTGT+GGG + chr1_4:51012889-51012908 None:intergenic 55.0%
TCACCCTTTCAGCGATGCTG+TGG + chr1_4:51012890-51012909 None:intergenic 55.0%
GTGGGAGAAACCAACCAGCT+TGG - chr1_4:51014669-51014688 Msa0168420:intron 55.0%
ACCAACCAGCTTGGGAGAAG+TGG - chr1_4:51014678-51014697 Msa0168420:intron 55.0%
ACCACTTCTCCCAAGCTGGT+TGG + chr1_4:51014682-51014701 None:intergenic 55.0%
AGTTGTCCGACGGTTGCGAT+TGG + chr1_4:51014826-51014845 None:intergenic 55.0%
! CGAAGGCATGTCTATGGAGG+AGG + chr1_4:51014875-51014894 None:intergenic 55.0%
! GTAGTAGATGAGGCGCTCGA+TGG + chr1_4:51014926-51014945 None:intergenic 55.0%
CCGTCGGCGGAGGTGAAATT+CGG + chr1_4:51011507-51011526 None:intergenic 60.0%
CCGAATTTCACCTCCGCCGA+CGG - chr1_4:51011504-51011523 Msa0168420:three_prime_UTR 60.0%
CGGTGCATGAAACCCACCTC+CGG + chr1_4:51011592-51011611 None:intergenic 60.0%
! CGGAGGTGGGTTTCATGCAC+CGG - chr1_4:51011590-51011609 Msa0168420:three_prime_UTR 60.0%
CCACTCCCGGAAGCTTCATC+AGG + chr1_4:51011669-51011688 None:intergenic 60.0%
CCTGATGAAGCTTCCGGGAG+TGG - chr1_4:51011666-51011685 Msa0168420:three_prime_UTR 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1_4:51011922-51011941 Msa0168420:three_prime_UTR 60.0%
GGTCGCATTGCTGGTGGTTG+TGG + chr1_4:51012831-51012850 None:intergenic 60.0%
CGCACTCTAGGTCGCATTGC+TGG + chr1_4:51012840-51012859 None:intergenic 60.0%
CCTCTTCTTGCCCGCACTCT+AGG + chr1_4:51012852-51012871 None:intergenic 60.0%
CCTAGAGTGCGGGCAAGAAG+AGG - chr1_4:51012849-51012868 Msa0168420:intron 60.0%
AGTGCGGGCAAGAAGAGGAC+AGG - chr1_4:51012854-51012873 Msa0168420:intron 60.0%
GACTGATCGAGCTGCCATGC+TGG - chr1_4:51013842-51013861 Msa0168420:intron 60.0%
TACCAGTGGAGCCACTGCAC+CGG + chr1_4:51014527-51014546 None:intergenic 60.0%
TCGTCGGCGGGTGTATCGGA+AGG + chr1_4:51011459-51011478 None:intergenic 65.0%
!! AGAAGCGTCGGTTCCGTCGG+CGG + chr1_4:51011520-51011539 None:intergenic 65.0%
!! CGGAGAAGCGTCGGTTCCGT+CGG + chr1_4:51011523-51011542 None:intergenic 65.0%
AAGGTGAGAGGCAGCGTCGC+CGG + chr1_4:51011565-51011584 None:intergenic 65.0%
CCGGAAACGCTTCCCACTCC+CGG + chr1_4:51011682-51011701 None:intergenic 65.0%
!! CCGGGAGTGGGAAGCGTTTC+CGG - chr1_4:51011679-51011698 Msa0168420:three_prime_UTR 65.0%
!! CGGGAGTGGGAAGCGTTTCC+GGG - chr1_4:51011680-51011699 Msa0168420:three_prime_UTR 65.0%
!! GAGTGGGAAGCGTTTCCGGG+AGG - chr1_4:51011683-51011702 Msa0168420:three_prime_UTR 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1_4:51011927-51011946 None:intergenic 65.0%
GCTGGTGGTTGTGGAGCAGC+AGG + chr1_4:51012822-51012841 None:intergenic 65.0%
ATTGGGTGGAGCCGGTGCAG+TGG - chr1_4:51014513-51014532 Msa0168420:intron 65.0%
GGCGACGCTGCCTCTCACCT+TGG - chr1_4:51011564-51011583 Msa0168420:three_prime_UTR 70.0%
GCTGCCTCTCACCTTGGCGC+CGG - chr1_4:51011570-51011589 Msa0168420:three_prime_UTR 70.0%
ACCTCCGGCGCCAAGGTGAG+AGG + chr1_4:51011577-51011596 None:intergenic 70.0%
! TCTCACCTTGGCGCCGGAGG+TGG - chr1_4:51011576-51011595 Msa0168420:three_prime_UTR 70.0%
! CTCACCTTGGCGCCGGAGGT+GGG - chr1_4:51011577-51011596 Msa0168420:three_prime_UTR 70.0%
GAAACCCACCTCCGGCGCCA+AGG + chr1_4:51011584-51011603 None:intergenic 70.0%
AGCCGGTGCAGTGGCTCCAC+TGG - chr1_4:51014522-51014541 Msa0168420:intron 70.0%
! GAGGCGCTCGATGGGACCAC+TGG + chr1_4:51014917-51014936 None:intergenic 70.0%
!! AGCGTCGGTTCCGTCGGCGG+AGG + chr1_4:51011517-51011536 None:intergenic 75.0%
! GCCTCTCACCTTGGCGCCGG+AGG - chr1_4:51011573-51011592 Msa0168420:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51011252 51015762 51011252 ID=Msa0168420;Name=Msa0168420
chr1_4 mRNA 51011252 51015762 51011252 ID=Msa0168420-mRNA-1;Parent=Msa0168420;Name=Msa0168420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=192|1|1|1|1|1|6|879|282
chr1_4 exon 51011252 51012361 51011252 ID=Msa0168420-mRNA-1:exon:15010;Parent=Msa0168420-mRNA-1
chr1_4 exon 51012441 51012518 51012441 ID=Msa0168420-mRNA-1:exon:15009;Parent=Msa0168420-mRNA-1
chr1_4 exon 51013106 51013171 51013106 ID=Msa0168420-mRNA-1:exon:15008;Parent=Msa0168420-mRNA-1
chr1_4 exon 51013915 51013980 51013915 ID=Msa0168420-mRNA-1:exon:15007;Parent=Msa0168420-mRNA-1
chr1_4 exon 51014109 51014228 51014109 ID=Msa0168420-mRNA-1:exon:15006;Parent=Msa0168420-mRNA-1
chr1_4 exon 51015283 51015762 51015283 ID=Msa0168420-mRNA-1:exon:15005;Parent=Msa0168420-mRNA-1
chr1_4 five_prime_UTR 51015571 51015762 51015571 ID=Msa0168420-mRNA-1:five_prime_utr;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51015283 51015570 51015283 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51014109 51014228 51014109 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51013915 51013980 51013915 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51013106 51013171 51013106 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51012441 51012518 51012441 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 CDS 51012131 51012361 51012131 ID=Msa0168420-mRNA-1:cds;Parent=Msa0168420-mRNA-1
chr1_4 three_prime_UTR 51011252 51012130 51011252 ID=Msa0168420-mRNA-1:three_prime_utr;Parent=Msa0168420-mRNA-1
Gene Sequence

>Msa0168420

ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCCGGAGGTGGGTTTCATGCACCGGTTTATCATTTGGGTTTGAGCTTGGACCAGGGTAAAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAAAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGACCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGACTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG
Protein sequence

>Msa0168420

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*