Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169090 | XP_003590676.1 | 93.846 | 325 | 20 | 0 | 1 | 325 | 1 | 325 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169090 | sp|Q8S3D5|LRL2_ARATH | 35.385 | 130 | 82 | 1 | 190 | 317 | 136 | 265 | 8.94e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169090 | G7IEF8 | 93.846 | 325 | 20 | 0 | 1 | 325 | 1 | 325 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0169090 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169090 | MtrunA17_Chr1g0185741 | 93.069 | 303 | 21 | 0 | 1 | 303 | 1 | 303 | 0.0 | 588 |
| Msa0169090 | MtrunA17_Chr4g0074161 | 33.133 | 166 | 82 | 4 | 181 | 317 | 194 | 359 | 1.72e-16 | 79.7 |
| Msa0169090 | MtrunA17_Chr1g0190731 | 32.117 | 137 | 81 | 1 | 190 | 314 | 199 | 335 | 2.97e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169090 | AT5G64980.1 | 43.902 | 123 | 67 | 2 | 191 | 311 | 218 | 340 | 4.83e-21 | 92.4 |
| Msa0169090 | AT5G64980.2 | 43.902 | 123 | 67 | 2 | 191 | 311 | 218 | 340 | 4.83e-21 | 92.4 |
| Msa0169090 | AT4G30980.1 | 35.385 | 130 | 82 | 1 | 190 | 317 | 136 | 265 | 9.09e-17 | 80.1 |
| Msa0169090 | AT4G30980.2 | 35.385 | 130 | 82 | 1 | 190 | 317 | 184 | 313 | 1.33e-16 | 80.1 |
| Msa0169090 | AT2G24260.2 | 33.533 | 167 | 84 | 5 | 170 | 317 | 23 | 181 | 1.43e-16 | 78.6 |
| Msa0169090 | AT2G24260.1 | 33.533 | 167 | 84 | 5 | 170 | 317 | 126 | 284 | 4.22e-16 | 78.6 |
| Msa0169090 | AT5G58010.1 | 32.432 | 148 | 76 | 4 | 190 | 315 | 105 | 250 | 6.25e-13 | 68.6 |
| Msa0169090 | AT1G03040.1 | 29.500 | 200 | 116 | 5 | 134 | 310 | 80 | 277 | 6.45e-12 | 65.9 |
| Msa0169090 | AT1G03040.2 | 28.571 | 196 | 120 | 4 | 133 | 310 | 79 | 272 | 6.89e-12 | 65.5 |
Find 78 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGCTGCCTCCTGATTT+TGG | 0.146986 | 1_4:-52164879 | None:intergenic |
| CATTATGGTTGATATATATT+TGG | 0.170861 | 1_4:+52166194 | Msa0169090:three_prime_UTR |
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1_4:+52163964 | Msa0169090:CDS |
| GTGCAAAAGGCTTAATTAAA+AGG | 0.208047 | 1_4:-52163554 | None:intergenic |
| GATTCTTCAAGTCATGATTT+TGG | 0.211671 | 1_4:+52164000 | Msa0169090:CDS |
| CCAAGCTAAACAAGGGTTAA+AGG | 0.249433 | 1_4:-52163642 | None:intergenic |
| TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1_4:+52164824 | Msa0169090:CDS |
| TTCAGAAACATCATGGTTAC+TGG | 0.281927 | 1_4:-52163743 | None:intergenic |
| TTACTTCCAAATCCAAAATC+AGG | 0.321359 | 1_4:+52164867 | Msa0169090:CDS |
| TGTTTGGATTATTTCTAGTT+TGG | 0.323791 | 1_4:+52166219 | Msa0169090:three_prime_UTR |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1_4:+52166016 | Msa0169090:CDS |
| ATATAACTCTTGAAAATCTA+TGG | 0.338045 | 1_4:+52166272 | Msa0169090:three_prime_UTR |
| TGATATATATTTGGTATGTT+TGG | 0.342554 | 1_4:+52166203 | Msa0169090:three_prime_UTR |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1_4:+52166097 | Msa0169090:CDS |
| TGCTTATCTCCAACTGAATC+AGG | 0.357388 | 1_4:-52164798 | None:intergenic |
| CAAATATATATCAACCATAA+TGG | 0.381821 | 1_4:-52166193 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1_4:+52166017 | Msa0169090:CDS |
| TCAGCTGTTGTAGTAGTGTT+TGG | 0.383509 | 1_4:-52163880 | None:intergenic |
| CTTGGTAGTGAATAAAATAA+TGG | 0.394469 | 1_4:+52163660 | Msa0169090:exon |
| GAAGCTCATATATTTGAAAC+TGG | 0.399824 | 1_4:+52164182 | Msa0169090:CDS |
| ACAGCTGAGTATAATATGAT+TGG | 0.401813 | 1_4:+52163895 | Msa0169090:CDS |
| ATTAAAAGTTAGAGAAAGAA+AGG | 0.406493 | 1_4:-52163499 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.412986 | 1_4:-52165138 | None:intergenic |
| TTTGGATTTGGAAGTAAAGA+AGG | 0.414312 | 1_4:-52164861 | None:intergenic |
| AAACAACAGATTACCACATC+TGG | 0.423786 | 1_4:-52165169 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1_4:-52166133 | None:intergenic |
| GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1_4:+52164825 | Msa0169090:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1_4:+52165980 | Msa0169090:intron |
| TACTACCAAGAGTTTGATAA+TGG | 0.442854 | 1_4:-52163924 | None:intergenic |
| CCTTTAACCCTTGTTTAGCT+TGG | 0.445034 | 1_4:+52163642 | Msa0169090:five_prime_UTR |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1_4:-52166107 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1_4:-52163783 | None:intergenic |
| ATTATTTCTAGTTTGGCCAT+TGG | 0.449578 | 1_4:+52166226 | Msa0169090:three_prime_UTR |
| ACTTGCATGAAAAGTAAGAT+AGG | 0.451879 | 1_4:+52166370 | Msa0169090:three_prime_UTR |
| ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1_4:-52164220 | None:intergenic |
| GTTAGCTAGCCTAGCTAGCT+TGG | 0.456823 | 1_4:-52166154 | None:intergenic |
| TTTCTGTGTTTAGATTTGTT+CGG | 0.468964 | 1_4:+52166320 | Msa0169090:three_prime_UTR |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1_4:+52163772 | Msa0169090:CDS |
| GCTTAATTAAAAGGGTATCA+TGG | 0.480694 | 1_4:-52163545 | None:intergenic |
| CAAATGAAGGGAAGTGCAAA+AGG | 0.482349 | 1_4:-52163567 | None:intergenic |
| GATGTTCTTCAGAAACATCA+TGG | 0.483475 | 1_4:-52163750 | None:intergenic |
| TGCAAAAGGCTTAATTAAAA+GGG | 0.486911 | 1_4:-52163553 | None:intergenic |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1_4:+52165328 | Msa0169090:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1_4:+52163781 | Msa0169090:CDS |
| CAGCTGAGTATAATATGATT+GGG | 0.492720 | 1_4:+52163896 | Msa0169090:CDS |
| AATAGCCATTATCAAACTCT+TGG | 0.493382 | 1_4:+52163919 | Msa0169090:CDS |
| ACTTTAACTTACCCAAATGA+AGG | 0.495766 | 1_4:-52163580 | None:intergenic |
| ATGGTTGAACCAAGCTAGCT+AGG | 0.499706 | 1_4:+52166145 | Msa0169090:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1_4:+52163949 | Msa0169090:CDS |
| CGGTTCTTGAATCCTTTGAT+CGG | 0.506444 | 1_4:+52166340 | Msa0169090:three_prime_UTR |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1_4:-52166020 | None:intergenic |
| AAGTTAGAGAAAGAAAGGTA+AGG | 0.518351 | 1_4:-52163494 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1_4:+52163718 | Msa0169090:CDS |
| TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1_4:+52164157 | Msa0169090:CDS |
| ATTCACTACCAAGCTAAACA+AGG | 0.551385 | 1_4:-52163650 | None:intergenic |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.552010 | 1_4:+52165538 | Msa0169090:intron |
| ACACAGGACTTATTTGTGAC+CGG | 0.561330 | 1_4:+52166393 | Msa0169090:three_prime_UTR |
| CAAGTCTAATAACCGATCAA+AGG | 0.572952 | 1_4:-52166352 | None:intergenic |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1_4:+52163791 | Msa0169090:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1_4:+52165373 | Msa0169090:CDS |
| CTCTTTGAATACAGCAACGC+AGG | 0.587080 | 1_4:+52165098 | Msa0169090:intron |
| TTCACTACCAAGCTAAACAA+GGG | 0.589987 | 1_4:-52163649 | None:intergenic |
| ACATGGACACCTGATTCAGT+TGG | 0.593145 | 1_4:+52164789 | Msa0169090:CDS |
| TGTAATAGGGTCATGCAACA+TGG | 0.593241 | 1_4:+52164772 | Msa0169090:intron |
| GTAGTGAATAAAATAATGGA+AGG | 0.599004 | 1_4:+52163664 | Msa0169090:exon |
| CTTTAACTTACCCAAATGAA+GGG | 0.601892 | 1_4:-52163579 | None:intergenic |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1_4:+52163782 | Msa0169090:CDS |
| CTTCCAAATCCAAAATCAGG+AGG | 0.618532 | 1_4:+52164870 | Msa0169090:CDS |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1_4:+52166018 | Msa0169090:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1_4:-52165592 | None:intergenic |
| AGTGTTTGGAAGATAACATG+AGG | 0.650470 | 1_4:-52163866 | None:intergenic |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1_4:+52166126 | Msa0169090:CDS |
| GGTGGGTACGTACACATGCA+AGG | 0.675976 | 1_4:-52163441 | None:intergenic |
| ATTGCTGCTGACTCCAGATG+TGG | 0.684981 | 1_4:+52165156 | Msa0169090:CDS |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1_4:+52166071 | Msa0169090:CDS |
| TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1_4:+52164211 | Msa0169090:CDS |
| TGAAAATCTATGGTACTCAG+AGG | 0.705901 | 1_4:+52166282 | Msa0169090:three_prime_UTR |
| TGAAAAGTAAGATAGGACAC+AGG | 0.717756 | 1_4:+52166377 | Msa0169090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATAAGTTATATATTA+TGG | + | chr1_4:52164427-52164446 | Msa0169090:intron | 10.0% |
| !!! | TTTTTTAACTTATTTTGATA+AGG | - | chr1_4:52164456-52164475 | None:intergenic | 10.0% |
| !!! | ATTCTGAAATTTATGATTAA+TGG | + | chr1_4:52164319-52164338 | Msa0169090:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1_4:52164598-52164617 | Msa0169090:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1_4:52164598-52164617 | Msa0169090:intron | 15.0% |
| !!! | TGTTGTAATAATTTTGTAAT+AGG | + | chr1_4:52164758-52164777 | Msa0169090:intron | 15.0% |
| !!! | GTTGTAATAATTTTGTAATA+GGG | + | chr1_4:52164759-52164778 | Msa0169090:intron | 15.0% |
| !! | ATTAAAATTCAGTTCATTAA+AGG | - | chr1_4:52165303-52165322 | None:intergenic | 15.0% |
| !! | AAAAAAAATTAGGATTGAAA+AGG | - | chr1_4:52165401-52165420 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTCTTCTTTATC+CGG | + | chr1_4:52165460-52165479 | Msa0169090:intron | 15.0% |
| !!! | ATTCTATTATTTTAAGCTTA+AGG | - | chr1_4:52165791-52165810 | None:intergenic | 15.0% |
| !!! | TTTTGTATGTTTTATTTACA+GGG | + | chr1_4:52165960-52165979 | Msa0169090:intron | 15.0% |
| !!! | TTTATTTTTATTCTCCATTA+TGG | + | chr1_4:52166179-52166198 | Msa0169090:three_prime_UTR | 15.0% |
| !! | ATTAAAAGTTAGAGAAAGAA+AGG | - | chr1_4:52163502-52163521 | None:intergenic | 20.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1_4:52163835-52163854 | None:intergenic | 20.0% |
| !! | AAATAAGCTGAATAAACTTA+TGG | + | chr1_4:52164529-52164548 | Msa0169090:intron | 20.0% |
| !!! | TAGAAAAAGTTTTACTTACA+CGG | - | chr1_4:52164938-52164957 | None:intergenic | 20.0% |
| !! | TATCTCTGATAAAATCATAA+GGG | + | chr1_4:52164956-52164975 | Msa0169090:intron | 20.0% |
| !!! | ATTTAAGTAGCTAGTTTTTT+TGG | + | chr1_4:52165232-52165251 | Msa0169090:intron | 20.0% |
| !!! | TTTAAGTAGCTAGTTTTTTT+GGG | + | chr1_4:52165233-52165252 | Msa0169090:intron | 20.0% |
| !!! | ATATATGTGCTACTTAAATT+TGG | - | chr1_4:52165260-52165279 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCTTCTTTATCC+GGG | + | chr1_4:52165461-52165480 | Msa0169090:intron | 20.0% |
| !!! | GTTTTGTATGTTTTATTTAC+AGG | + | chr1_4:52165959-52165978 | Msa0169090:intron | 20.0% |
| !! | CAAATATATATCAACCATAA+TGG | - | chr1_4:52166196-52166215 | None:intergenic | 20.0% |
| !!! | CATTATGGTTGATATATATT+TGG | + | chr1_4:52166194-52166213 | Msa0169090:three_prime_UTR | 20.0% |
| !! | TGATATATATTTGGTATGTT+TGG | + | chr1_4:52166203-52166222 | Msa0169090:three_prime_UTR | 20.0% |
| !! | ATATAACTCTTGAAAATCTA+TGG | + | chr1_4:52166272-52166291 | Msa0169090:three_prime_UTR | 20.0% |
| ! | TGCAAAAGGCTTAATTAAAA+GGG | - | chr1_4:52163556-52163575 | None:intergenic | 25.0% |
| ! | GTATATTGAAAAAGTGGTAA+AGG | - | chr1_4:52163611-52163630 | None:intergenic | 25.0% |
| ! | ACTTGAGTATATTGAAAAAG+TGG | - | chr1_4:52163617-52163636 | None:intergenic | 25.0% |
| !!! | CTTGGTAGTGAATAAAATAA+TGG | + | chr1_4:52163660-52163679 | Msa0169090:exon | 25.0% |
| !! | GTAGTGAATAAAATAATGGA+AGG | + | chr1_4:52163664-52163683 | Msa0169090:exon | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1_4:52163718-52163737 | Msa0169090:CDS | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1_4:52163826-52163845 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1_4:52164083-52164102 | Msa0169090:intron | 25.0% |
| ! | CTATCTCTGATAAAATCATA+AGG | + | chr1_4:52164955-52164974 | Msa0169090:intron | 25.0% |
| ! | GCAAAATTGTGTTAATGAAT+TGG | - | chr1_4:52165061-52165080 | None:intergenic | 25.0% |
| !!! | TGAACTGAATTTTAATTTGC+AGG | + | chr1_4:52165307-52165326 | Msa0169090:intron | 25.0% |
| !!! | GAACTGAATTTTAATTTGCA+GGG | + | chr1_4:52165308-52165327 | Msa0169090:intron | 25.0% |
| ! | TCACAGTAATGCAATATATA+AGG | - | chr1_4:52165625-52165644 | None:intergenic | 25.0% |
| ! | TACTCAAGAAATTATTTGCA+TGG | - | chr1_4:52165674-52165693 | None:intergenic | 25.0% |
| !! | TTGTTACTTGTACATTTCAT+AGG | + | chr1_4:52165714-52165733 | Msa0169090:intron | 25.0% |
| !! | TAACTTGTATTTACATGCAA+CGG | - | chr1_4:52165757-52165776 | None:intergenic | 25.0% |
| !!! | ATGTTTTATTTACAGGGTTA+TGG | + | chr1_4:52165966-52165985 | Msa0169090:intron | 25.0% |
| !!! | TGTTTTATTTACAGGGTTAT+GGG | + | chr1_4:52165967-52165986 | Msa0169090:intron | 25.0% |
| !!! | TGTTTGGATTATTTCTAGTT+TGG | + | chr1_4:52166219-52166238 | Msa0169090:three_prime_UTR | 25.0% |
| !! | TTTCTGTGTTTAGATTTGTT+CGG | + | chr1_4:52166320-52166339 | Msa0169090:three_prime_UTR | 25.0% |
| !!! | TCTGTTTTTTGTTTGTTGGT+GGG | - | chr1_4:52163461-52163480 | None:intergenic | 30.0% |
| !!! | TTGCTCTGTTTTTTGTTTGT+TGG | - | chr1_4:52163465-52163484 | None:intergenic | 30.0% |
| AAGTTAGAGAAAGAAAGGTA+AGG | - | chr1_4:52163497-52163516 | None:intergenic | 30.0% | |
| !! | GCTTAATTAAAAGGGTATCA+TGG | - | chr1_4:52163548-52163567 | None:intergenic | 30.0% |
| GTGCAAAAGGCTTAATTAAA+AGG | - | chr1_4:52163557-52163576 | None:intergenic | 30.0% | |
| ! | CTTTAACTTACCCAAATGAA+GGG | - | chr1_4:52163582-52163601 | None:intergenic | 30.0% |
| ! | ACTTTAACTTACCCAAATGA+AGG | - | chr1_4:52163583-52163602 | None:intergenic | 30.0% |
| CAAATTCAAAACCAACACTT+TGG | + | chr1_4:52163772-52163791 | Msa0169090:CDS | 30.0% | |
| ACAGCTGAGTATAATATGAT+TGG | + | chr1_4:52163895-52163914 | Msa0169090:CDS | 30.0% | |
| CAGCTGAGTATAATATGATT+GGG | + | chr1_4:52163896-52163915 | Msa0169090:CDS | 30.0% | |
| AATAGCCATTATCAAACTCT+TGG | + | chr1_4:52163919-52163938 | Msa0169090:CDS | 30.0% | |
| TACTACCAAGAGTTTGATAA+TGG | - | chr1_4:52163927-52163946 | None:intergenic | 30.0% | |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1_4:52164000-52164019 | Msa0169090:CDS | 30.0% |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1_4:52164027-52164046 | Msa0169090:intron | 30.0% | |
| ! | GAAGCTCATATATTTGAAAC+TGG | + | chr1_4:52164182-52164201 | Msa0169090:CDS | 30.0% |
| ATTAACTAACCTCAGTATAG+TGG | - | chr1_4:52164223-52164242 | None:intergenic | 30.0% | |
| ! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1_4:52164225-52164244 | Msa0169090:intron | 30.0% |
| AATCTATCTTGAAGAGCTTA+TGG | + | chr1_4:52164506-52164525 | Msa0169090:intron | 30.0% | |
| AGAGCTTATGAAAACAGTTT+AGG | - | chr1_4:52164561-52164580 | None:intergenic | 30.0% | |
| TATGCAAACGTGAAACTATT+TGG | - | chr1_4:52164723-52164742 | None:intergenic | 30.0% | |
| TGCTTCACAATTTGATCATA+TGG | + | chr1_4:52164824-52164843 | Msa0169090:CDS | 30.0% | |
| GCTTCACAATTTGATCATAT+GGG | + | chr1_4:52164825-52164844 | Msa0169090:CDS | 30.0% | |
| TTTGGATTTGGAAGTAAAGA+AGG | - | chr1_4:52164864-52164883 | None:intergenic | 30.0% | |
| TTACTTCCAAATCCAAAATC+AGG | + | chr1_4:52164867-52164886 | Msa0169090:CDS | 30.0% | |
| !! | TTTCTCACTTTTCTGTTTTG+TGG | - | chr1_4:52164901-52164920 | None:intergenic | 30.0% |
| ! | GTATATCTGCATTTTGAATG+TGG | - | chr1_4:52164982-52165001 | None:intergenic | 30.0% |
| TCTACAATAGCTAAAGAAAG+TGG | + | chr1_4:52165516-52165535 | Msa0169090:intron | 30.0% | |
| CTTGTACATTTCATAGGAAA+TGG | + | chr1_4:52165720-52165739 | Msa0169090:intron | 30.0% | |
| !!! | CATTTTTTGTCTTTTGAACC+AGG | + | chr1_4:52165881-52165900 | Msa0169090:intron | 30.0% |
| !! | ATTATTTCTAGTTTGGCCAT+TGG | + | chr1_4:52166226-52166245 | Msa0169090:three_prime_UTR | 30.0% |
| AGAAAAGAAAAAGTAGCCAA+TGG | - | chr1_4:52166245-52166264 | None:intergenic | 30.0% | |
| ACTTGCATGAAAAGTAAGAT+AGG | + | chr1_4:52166370-52166389 | Msa0169090:three_prime_UTR | 30.0% | |
| !!! | CTCTGTTTTTTGTTTGTTGG+TGG | - | chr1_4:52163462-52163481 | None:intergenic | 35.0% |
| ! | TTTTGCACTTCCCTTCATTT+GGG | + | chr1_4:52163569-52163588 | Msa0169090:five_prime_UTR | 35.0% |
| TTCACTACCAAGCTAAACAA+GGG | - | chr1_4:52163652-52163671 | None:intergenic | 35.0% | |
| ATTCACTACCAAGCTAAACA+AGG | - | chr1_4:52163653-52163672 | None:intergenic | 35.0% | |
| TTCAGAAACATCATGGTTAC+TGG | - | chr1_4:52163746-52163765 | None:intergenic | 35.0% | |
| GATGTTCTTCAGAAACATCA+TGG | - | chr1_4:52163753-52163772 | None:intergenic | 35.0% | |
| AGTGTTTGGAAGATAACATG+AGG | - | chr1_4:52163869-52163888 | None:intergenic | 35.0% | |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1_4:52163970-52163989 | None:intergenic | 35.0% |
| !!! | CAAGTCATGATTTTGGTGTT+AGG | + | chr1_4:52164007-52164026 | Msa0169090:CDS | 35.0% |
| !!! | TCATGATTTTGGTGTTAGGA+AGG | + | chr1_4:52164011-52164030 | Msa0169090:CDS | 35.0% |
| !!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1_4:52164132-52164151 | Msa0169090:intron | 35.0% |
| TCAAAATCTCCACTATACTG+AGG | + | chr1_4:52164211-52164230 | Msa0169090:CDS | 35.0% | |
| AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1_4:52164574-52164593 | Msa0169090:intron | 35.0% | |
| AAGCTCTTGTGAAGAGTTTA+TGG | + | chr1_4:52164643-52164662 | Msa0169090:intron | 35.0% | |
| ! | TATTCAAAGAGTACACGGTA+TGG | - | chr1_4:52165089-52165108 | None:intergenic | 35.0% |
| ! | TGCTGTATTCAAAGAGTACA+CGG | - | chr1_4:52165094-52165113 | None:intergenic | 35.0% |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1_4:52165141-52165160 | None:intergenic | 35.0% | |
| AAACAACAGATTACCACATC+TGG | - | chr1_4:52165172-52165191 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1_4:52165373-52165392 | Msa0169090:CDS | 35.0% | |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1_4:52165588-52165607 | Msa0169090:CDS | 35.0% |
| TATTTGCATGGAGCAGAATT+TGG | - | chr1_4:52165662-52165681 | None:intergenic | 35.0% | |
| ! | CACGTGTCTTTTACTAAAGA+CGG | - | chr1_4:52165855-52165874 | None:intergenic | 35.0% |
| TTATGTTAGAACAACAAGCC+TGG | - | chr1_4:52165902-52165921 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1_4:52165980-52165999 | Msa0169090:intron | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1_4:52166071-52166090 | Msa0169090:CDS | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1_4:52166110-52166129 | None:intergenic | 35.0% | |
| TGAAAATCTATGGTACTCAG+AGG | + | chr1_4:52166282-52166301 | Msa0169090:three_prime_UTR | 35.0% | |
| CAAGTCTAATAACCGATCAA+AGG | - | chr1_4:52166355-52166374 | None:intergenic | 35.0% | |
| TGAAAAGTAAGATAGGACAC+AGG | + | chr1_4:52166377-52166396 | Msa0169090:three_prime_UTR | 35.0% | |
| ! | CAAATGAAGGGAAGTGCAAA+AGG | - | chr1_4:52163570-52163589 | None:intergenic | 40.0% |
| ! | CTTTTGCACTTCCCTTCATT+TGG | + | chr1_4:52163568-52163587 | Msa0169090:five_prime_UTR | 40.0% |
| CCAAGCTAAACAAGGGTTAA+AGG | - | chr1_4:52163645-52163664 | None:intergenic | 40.0% | |
| ! | CCTTTAACCCTTGTTTAGCT+TGG | + | chr1_4:52163642-52163661 | Msa0169090:five_prime_UTR | 40.0% |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1_4:52163781-52163800 | Msa0169090:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1_4:52163782-52163801 | Msa0169090:CDS | 40.0% |
| TCAGCTGTTGTAGTAGTGTT+TGG | - | chr1_4:52163883-52163902 | None:intergenic | 40.0% | |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1_4:52163964-52163983 | Msa0169090:CDS | 40.0% |
| !!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1_4:52164131-52164150 | Msa0169090:intron | 40.0% |
| !!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1_4:52164152-52164171 | Msa0169090:CDS | 40.0% |
| TTGGAGAAATGATGAAGGAG+AGG | + | chr1_4:52164157-52164176 | Msa0169090:CDS | 40.0% | |
| TGTAATAGGGTCATGCAACA+TGG | + | chr1_4:52164772-52164791 | Msa0169090:intron | 40.0% | |
| TGCTTATCTCCAACTGAATC+AGG | - | chr1_4:52164801-52164820 | None:intergenic | 40.0% | |
| CTTCCAAATCCAAAATCAGG+AGG | + | chr1_4:52164870-52164889 | Msa0169090:CDS | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1_4:52165328-52165347 | Msa0169090:intron | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1_4:52165482-52165501 | None:intergenic | 40.0% | |
| AAAGAAAGTGGTTCCTTTGC+AGG | + | chr1_4:52165528-52165547 | Msa0169090:intron | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1_4:52165595-52165614 | None:intergenic | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1_4:52165606-52165625 | None:intergenic | 40.0% | |
| TCGATTGTGCCTACATCTTA+CGG | - | chr1_4:52165832-52165851 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1_4:52166016-52166035 | Msa0169090:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1_4:52166017-52166036 | Msa0169090:CDS | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1_4:52166018-52166037 | Msa0169090:CDS | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1_4:52166023-52166042 | None:intergenic | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1_4:52166126-52166145 | Msa0169090:CDS | 40.0% | |
| CGGTTCTTGAATCCTTTGAT+CGG | + | chr1_4:52166340-52166359 | Msa0169090:three_prime_UTR | 40.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1_4:52163786-52163805 | None:intergenic | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1_4:52163791-52163810 | Msa0169090:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1_4:52163949-52163968 | Msa0169090:CDS | 45.0% | |
| ! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1_4:52164138-52164157 | Msa0169090:intron | 45.0% |
| ACATGGACACCTGATTCAGT+TGG | + | chr1_4:52164789-52164808 | Msa0169090:CDS | 45.0% | |
| ! | CTGCCTCCTGATTTTGGATT+TGG | - | chr1_4:52164876-52164895 | None:intergenic | 45.0% |
| CTCTTTGAATACAGCAACGC+AGG | + | chr1_4:52165098-52165117 | Msa0169090:intron | 45.0% | |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1_4:52165538-52165557 | Msa0169090:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1_4:52165544-52165563 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1_4:52166097-52166116 | Msa0169090:CDS | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1_4:52166136-52166155 | None:intergenic | 45.0% | |
| ATGGTTGAACCAAGCTAGCT+AGG | + | chr1_4:52166145-52166164 | Msa0169090:CDS | 45.0% | |
| !! | TTCAAAAAAAAAAAAAAATT+AGG | - | chr1_4:52165411-52165430 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTTTTTTGAA+TGG | + | chr1_4:52165411-52165430 | Msa0169090:intron | 5.0% |
| !! | ATTGCTGCTGACTCCAGATG+TGG | + | chr1_4:52165156-52165175 | Msa0169090:CDS | 50.0% |
| ATCTTACGGCAGAGTGGCTA+TGG | - | chr1_4:52165818-52165837 | None:intergenic | 50.0% | |
| ! | GTTAGCTAGCCTAGCTAGCT+TGG | - | chr1_4:52166157-52166176 | None:intergenic | 50.0% |
| GGTGGGTACGTACACATGCA+AGG | - | chr1_4:52163444-52163463 | None:intergenic | 55.0% | |
| ! | GTGGAGCTGCCTCCTGATTT+TGG | - | chr1_4:52164882-52164901 | None:intergenic | 55.0% |
| GCCACTCTGCCGTAAGATGT+AGG | + | chr1_4:52165820-52165839 | Msa0169090:intron | 55.0% | |
| GCCTACATCTTACGGCAGAG+TGG | - | chr1_4:52165824-52165843 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52163436 | 52166415 | 52163436 | ID=Msa0169090;Name=Msa0169090 |
| chr1_4 | mRNA | 52163436 | 52166415 | 52163436 | ID=Msa0169090-mRNA-1;Parent=Msa0169090;Name=Msa0169090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=243|1|1|1|1|1|7|249|325 |
| chr1_4 | exon | 52163436 | 52164032 | 52163436 | ID=Msa0169090-mRNA-1:exon:15365;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52164146 | 52164232 | 52164146 | ID=Msa0169090-mRNA-1:exon:15366;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52164780 | 52164938 | 52164780 | ID=Msa0169090-mRNA-1:exon:15367;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52165112 | 52165177 | 52165112 | ID=Msa0169090-mRNA-1:exon:15368;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52165329 | 52165394 | 52165329 | ID=Msa0169090-mRNA-1:exon:15369;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52165550 | 52165609 | 52165550 | ID=Msa0169090-mRNA-1:exon:15370;Parent=Msa0169090-mRNA-1 |
| chr1_4 | exon | 52165981 | 52166415 | 52165981 | ID=Msa0169090-mRNA-1:exon:15371;Parent=Msa0169090-mRNA-1 |
| chr1_4 | five_prime_UTR | 52163436 | 52163678 | 52163436 | ID=Msa0169090-mRNA-1:five_prime_utr;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52163679 | 52164032 | 52163679 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52164146 | 52164232 | 52164146 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52164780 | 52164938 | 52164780 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52165112 | 52165177 | 52165112 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52165329 | 52165394 | 52165329 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52165550 | 52165609 | 52165550 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | CDS | 52165981 | 52166166 | 52165981 | ID=Msa0169090-mRNA-1:cds;Parent=Msa0169090-mRNA-1 |
| chr1_4 | three_prime_UTR | 52166167 | 52166415 | 52166167 | ID=Msa0169090-mRNA-1:three_prime_utr;Parent=Msa0169090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
