AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169340 MtrunA17_Chr1g0186061 96.484 256 9 0 1 256 1 256 0.0 511
Msa0169340 MtrunA17_Chr1g0168661 64.015 264 86 5 2 264 3 258 9.54e-108 312
Msa0169340 MtrunA17_Chr1g0209661 65.455 110 38 0 16 125 23 132 7.24e-52 171
Msa0169340 MtrunA17_Chr1g0194291 68.571 105 33 0 21 125 22 126 1.97e-51 169
Msa0169340 MtrunA17_Chr7g0228231 65.455 110 38 0 21 130 15 124 6.08e-51 166
Msa0169340 MtrunA17_Chr6g0450101 66.667 105 35 0 21 125 15 119 2.79e-50 164
Msa0169340 MtrunA17_Chr1g0194301 65.714 105 36 0 21 125 34 138 2.92e-50 166
Msa0169340 MtrunA17_Chr4g0039971 62.037 108 41 0 16 123 9 116 2.43e-47 160
Msa0169340 MtrunA17_Chr2g0327821 59.821 112 45 0 15 126 1 112 5.43e-47 156
Msa0169340 MtrunA17_Chr5g0434571 47.283 184 88 4 21 197 49 230 8.39e-47 159
Msa0169340 MtrunA17_Chr3g0131121 62.727 110 41 0 14 123 6 115 1.74e-46 157
Msa0169340 MtrunA17_Chr3g0115821 61.111 108 42 0 16 123 8 115 2.95e-46 157
Msa0169340 MtrunA17_Chr4g0030881 61.818 110 35 1 21 123 8 117 3.45e-46 155
Msa0169340 MtrunA17_Chr4g0057031 66.019 103 35 0 21 123 13 115 5.90e-46 155
Msa0169340 MtrunA17_Chr7g0275911 63.810 105 38 0 22 126 14 118 6.22e-46 154
Msa0169340 MtrunA17_Chr8g0346561 66.667 102 34 0 22 123 14 115 6.56e-46 155
Msa0169340 MtrunA17_Chr4g0037141 40.625 192 98 4 14 205 6 181 1.92e-45 154
Msa0169340 MtrunA17_Chr4g0070641 62.857 105 39 0 22 126 14 118 2.51e-45 150
Msa0169340 MtrunA17_Chr4g0070611 62.857 105 39 0 22 126 14 118 2.95e-45 154
Msa0169340 MtrunA17_Chr2g0293911 67.619 105 34 0 21 125 25 129 1.13e-44 153
Msa0169340 MtrunA17_Chr5g0395281 56.481 108 47 0 16 123 8 115 1.25e-44 152
Msa0169340 MtrunA17_Chr4g0068061 64.423 104 37 0 21 124 13 116 4.27e-44 152
Msa0169340 MtrunA17_Chr1g0187761 57.522 113 48 0 21 133 13 125 5.01e-44 149
Msa0169340 MtrunA17_Chr4g0068921 65.714 105 36 0 21 125 25 129 5.58e-44 147
Msa0169340 MtrunA17_Chr7g0274581 58.095 105 44 0 21 125 13 117 6.63e-44 147
Msa0169340 MtrunA17_Chr3g0110351 62.857 105 39 0 21 125 13 117 7.57e-44 150
Msa0169340 MtrunA17_Chr1g0193371 60.177 113 45 0 13 125 5 117 8.59e-44 152
Msa0169340 MtrunA17_Chr7g0217741 64.078 103 37 0 21 123 13 115 9.41e-44 150
Msa0169340 MtrunA17_Chr3g0121241 63.208 106 39 0 21 126 43 148 1.24e-43 150
Msa0169340 MtrunA17_Chr5g0410961 56.780 118 51 0 21 138 13 130 1.64e-43 150
Msa0169340 MtrunA17_Chr2g0328771 51.079 139 60 1 21 151 21 159 2.02e-43 149
Msa0169340 MtrunA17_Chr5g0435101 59.804 102 41 0 22 123 13 114 2.10e-43 146
Msa0169340 MtrunA17_Chr1g0180391 38.565 223 120 6 21 237 20 231 2.87e-43 147
Msa0169340 MtrunA17_Chr2g0281071 60.194 103 41 0 21 123 14 116 3.49e-43 150
Msa0169340 MtrunA17_Chr8g0349261 61.538 104 39 1 21 123 14 117 3.58e-43 148
Msa0169340 MtrunA17_Chr8g0385321 60.000 110 44 0 14 123 6 115 5.61e-43 148
Msa0169340 MtrunA17_Chr1g0203411 58.095 105 44 0 21 125 13 117 6.61e-43 147
Msa0169340 MtrunA17_Chr7g0261281 54.400 125 53 2 21 145 13 133 6.90e-43 147
Msa0169340 MtrunA17_Chr3g0117091 48.551 138 69 1 19 156 11 146 1.42e-42 148
Msa0169340 MtrunA17_Chr3g0080861 58.261 115 48 0 11 125 28 142 1.42e-42 152
Msa0169340 MtrunA17_Chr2g0323411 60.194 103 41 0 21 123 13 115 1.58e-42 147
Msa0169340 MtrunA17_Chr1g0211161 60.000 105 42 0 19 123 12 116 2.84e-42 144
Msa0169340 MtrunA17_Chr3g0099131 61.165 103 40 0 21 123 42 144 3.34e-42 151
Msa0169340 MtrunA17_Chr4g0048511 59.223 103 42 0 21 123 14 116 5.02e-42 147
Msa0169340 MtrunA17_Chr1g0167691 58.252 103 43 0 21 123 13 115 5.94e-42 144
Msa0169340 MtrunA17_Chr8g0342541 55.357 112 50 0 13 124 5 116 6.58e-42 146
Msa0169340 MtrunA17_Chr1g0167661 50.781 128 61 1 21 148 13 138 7.01e-42 144
Msa0169340 MtrunA17_Chr4g0022931 48.592 142 72 1 21 161 14 155 9.32e-42 144
Msa0169340 MtrunA17_Chr2g0330041 55.856 111 49 0 13 123 5 115 1.84e-41 146
Msa0169340 MtrunA17_Chr8g0354661 60.952 105 41 0 21 125 38 142 2.35e-41 149
Msa0169340 MtrunA17_Chr4g0042671 62.136 103 39 0 21 123 13 115 2.40e-41 146
Msa0169340 MtrunA17_Chr8g0342521 56.757 111 48 0 13 123 5 115 2.44e-41 145
Msa0169340 MtrunA17_Chr4g0044421 59.804 102 41 0 22 123 14 115 2.71e-41 140
Msa0169340 MtrunA17_Chr7g0228891 47.403 154 75 2 21 171 13 163 3.29e-41 142
Msa0169340 MtrunA17_Chr1g0193801 35.600 250 134 3 13 262 5 227 3.89e-41 145
Msa0169340 MtrunA17_Chr7g0271241 62.500 104 39 0 13 116 5 108 4.10e-41 145
Msa0169340 MtrunA17_Chr6g0453471 61.165 103 40 0 21 123 13 115 4.57e-41 144
Msa0169340 MtrunA17_Chr1g0203441 61.538 104 40 0 21 124 14 117 4.73e-41 142
Msa0169340 MtrunA17_Chr3g0092401 43.671 158 87 1 21 176 14 171 5.80e-41 143
Msa0169340 MtrunA17_Chr4g0022881 58.095 105 44 0 21 125 13 117 9.83e-41 140
Msa0169340 MtrunA17_Chr2g0309911 53.982 113 52 0 11 123 2 114 1.00e-40 142
Msa0169340 MtrunA17_Chr6g0470971 56.881 109 47 0 15 123 9 117 1.08e-40 141
Msa0169340 MtrunA17_Chr1g0154031 59.048 105 43 0 21 125 77 181 1.41e-40 144
Msa0169340 MtrunA17_Chr2g0323351 47.651 149 72 3 21 165 13 159 1.61e-40 140
Msa0169340 MtrunA17_Chr7g0270891 56.637 113 49 0 13 125 5 117 1.95e-40 143
Msa0169340 MtrunA17_Chr4g0022901 54.310 116 53 0 21 136 14 129 3.79e-40 140
Msa0169340 MtrunA17_Chr4g0032401 58.559 111 46 0 18 128 15 125 5.31e-40 141
Msa0169340 MtrunA17_Chr8g0343831 58.333 108 44 1 22 128 10 117 5.33e-40 139
Msa0169340 MtrunA17_Chr4g0060721 45.033 151 80 1 21 168 14 164 9.02e-40 140
Msa0169340 MtrunA17_Chr1g0194951 59.223 103 42 0 21 123 13 115 9.72e-40 141
Msa0169340 MtrunA17_Chr7g0217221 58.095 105 44 0 21 125 13 117 1.14e-39 139
Msa0169340 MtrunA17_Chr3g0088461 54.955 111 50 0 15 125 17 127 1.32e-39 140
Msa0169340 MtrunA17_Chr4g0058631 59.048 105 43 0 19 123 11 115 1.99e-39 140
Msa0169340 MtrunA17_Chr7g0254411 51.200 125 55 1 21 139 13 137 3.32e-39 139
Msa0169340 MtrunA17_Chr8g0387421 53.982 113 52 0 13 125 5 117 3.92e-39 138
Msa0169340 MtrunA17_Chr8g0342481 54.464 112 50 1 13 123 5 116 5.53e-39 140
Msa0169340 MtrunA17_Chr1g0151941 52.294 109 51 1 16 123 8 116 7.55e-39 136
Msa0169340 MtrunA17_Chr4g0055981 52.212 113 54 0 22 134 57 169 8.41e-39 135
Msa0169340 MtrunA17_Chr4g0022911 56.311 103 45 0 21 123 14 116 2.10e-38 135
Msa0169340 MtrunA17_Chr4g0022891 40.645 155 87 2 21 170 13 167 5.04e-38 133
Msa0169340 MtrunA17_Chr5g0397231 54.717 106 48 0 13 118 5 110 9.78e-38 135
Msa0169340 MtrunA17_Chr3g0103281 54.545 110 50 0 14 123 6 115 1.59e-37 134
Msa0169340 MtrunA17_Chr6g0452271 56.311 103 45 0 21 123 13 115 3.22e-37 134
Msa0169340 MtrunA17_Chr7g0269831 63.462 104 38 0 21 124 13 116 3.71e-37 134
Msa0169340 MtrunA17_Chr2g0322521 61.165 103 40 0 21 123 30 132 5.80e-37 134
Msa0169340 MtrunA17_Chr5g0417821 57.282 103 44 0 21 123 8 110 5.85e-37 132
Msa0169340 MtrunA17_Chr6g0453211 57.576 99 42 0 21 119 13 111 1.24e-36 132
Msa0169340 MtrunA17_Chr2g0327351 59.596 99 39 1 21 118 13 111 1.81e-36 131
Msa0169340 MtrunA17_Chr1g0192411 55.140 107 48 0 19 125 11 117 2.10e-36 133
Msa0169340 MtrunA17_Chr1g0152011 52.500 120 54 2 21 137 13 132 2.29e-36 132
Msa0169340 MtrunA17_Chr4g0028311 55.769 104 45 1 21 123 13 116 9.47e-36 130
Msa0169340 MtrunA17_Chr2g0311221 56.566 99 43 0 21 119 15 113 1.15e-35 129
Msa0169340 MtrunA17_Chr7g0264641 52.212 113 53 1 21 132 13 125 2.70e-35 127
Msa0169340 MtrunA17_Chr3g0135311 55.769 104 45 1 21 123 13 116 2.70e-35 129
Msa0169340 MtrunA17_Chr7g0240821 46.154 130 66 1 25 154 6 131 3.43e-35 125
Msa0169340 MtrunA17_Chr5g0434931 32.203 236 145 3 21 241 36 271 9.19e-35 126
Msa0169340 MtrunA17_Chr5g0400821 45.255 137 71 2 21 156 13 146 2.03e-34 126
Msa0169340 MtrunA17_Chr5g0434911 32.245 245 145 5 21 261 22 249 2.21e-34 125
Msa0169340 MtrunA17_Chr5g0434831 53.153 111 51 1 15 124 1 111 4.30e-33 119
Msa0169340 MtrunA17_Chr4g0054391 54.639 97 43 1 21 116 13 109 4.41e-33 122
Msa0169340 MtrunA17_Chr3g0099141 58.140 86 36 0 16 101 36 121 8.68e-33 117
Msa0169340 MtrunA17_Chr7g0220341 34.043 235 140 7 21 250 26 250 1.09e-32 120
Msa0169340 MtrunA17_Chr8g0360111 54.000 100 46 0 21 120 26 125 1.10e-32 120
Msa0169340 MtrunA17_Chr4g0072751 54.545 99 44 1 21 118 13 111 1.20e-32 122
Msa0169340 MtrunA17_Chr7g0228991 54.808 104 47 0 21 124 30 133 1.26e-32 120
Msa0169340 MtrunA17_Chr8g0334881 50.962 104 50 1 16 118 6 109 1.50e-32 121
Msa0169340 MtrunA17_Chr5g0440781 50.485 103 50 1 21 122 13 115 1.85e-32 117
Msa0169340 MtrunA17_Chr4g0013361 42.537 134 72 2 21 149 11 144 5.21e-32 119
Msa0169340 MtrunA17_Chr5g0440761 50.000 106 52 1 21 125 13 118 5.28e-32 118
Msa0169340 MtrunA17_Chr5g0441141 50.000 106 52 1 21 125 13 118 5.69e-32 119
Msa0169340 MtrunA17_Chr7g0247131 64.474 76 27 0 51 126 9 84 8.26e-32 118
Msa0169340 MtrunA17_Chr6g0487491 47.059 119 54 2 14 123 6 124 9.10e-32 117
Msa0169340 MtrunA17_Chr5g0441131 48.113 106 54 1 21 125 10 115 1.27e-30 112
Msa0169340 MtrunA17_Chr5g0434841 50.450 111 54 1 15 124 14 124 2.69e-30 115
Msa0169340 MtrunA17_Chr3g0133601 49.038 104 50 2 22 124 37 138 9.02e-30 111
Msa0169340 MtrunA17_Chr6g0454921 40.268 149 78 4 22 162 15 160 1.28e-28 108
Msa0169340 MtrunA17_Chr5g0401731 48.276 116 56 3 9 123 3 115 1.51e-28 110
Msa0169340 MtrunA17_Chr8g0342511 54.217 83 38 0 13 95 5 87 2.37e-28 104
Msa0169340 MtrunA17_Chr8g0342531 54.118 85 39 0 13 97 5 89 2.43e-28 106
Msa0169340 MtrunA17_Chr4g0042611 55.952 84 37 0 13 96 5 88 2.68e-28 103
Msa0169340 MtrunA17_Chr4g0053431 49.020 102 51 1 22 123 5 105 1.20e-27 107
Msa0169340 MtrunA17_Chr5g0395221 55.263 76 34 0 21 96 13 88 2.10e-27 101
Msa0169340 MtrunA17_Chr4g0008551 48.544 103 50 2 22 123 38 138 2.18e-27 108
Msa0169340 MtrunA17_Chr2g0323321 58.750 80 33 0 21 100 12 91 2.51e-27 102
Msa0169340 MtrunA17_Chr2g0294811 56.250 80 35 0 21 100 13 92 4.84e-27 101
Msa0169340 MtrunA17_Chr5g0429661 44.355 124 61 3 22 139 122 243 5.82e-27 107
Msa0169340 MtrunA17_Chr8g0342461 51.163 86 41 1 13 97 5 90 1.68e-26 100
Msa0169340 MtrunA17_Chr8g0342471 51.163 86 41 1 13 97 5 90 3.25e-26 100
Msa0169340 MtrunA17_Chr5g0437321 49.000 100 48 2 22 120 19 116 4.76e-25 100
Msa0169340 MtrunA17_Chr7g0238631 48.544 103 50 2 22 123 113 213 8.53e-25 103
Msa0169340 MtrunA17_Chr7g0238631 37.037 108 66 2 19 125 58 164 3.14e-13 69.3
Msa0169340 MtrunA17_Chr4g0058991 46.296 108 51 3 22 124 209 314 3.31e-24 100
Msa0169340 MtrunA17_Chr3g0139671 44.660 103 54 2 22 123 85 185 3.45e-24 101
Msa0169340 MtrunA17_Chr3g0139671 34.234 111 66 3 19 128 30 134 2.88e-11 63.5
Msa0169340 MtrunA17_Chr3g0117511 46.939 98 49 2 20 116 181 276 4.13e-24 100
Msa0169340 MtrunA17_Chr1g0157731 45.631 103 53 2 22 123 91 191 5.32e-24 101
Msa0169340 MtrunA17_Chr1g0157731 33.981 103 66 2 19 120 36 137 2.51e-11 63.5
Msa0169340 MtrunA17_Chr5g0425591 48.780 82 41 1 21 101 10 91 1.11e-22 89.4
Msa0169340 MtrunA17_Chr5g0417621 41.818 110 61 2 22 130 134 241 1.57e-22 95.9
Msa0169340 MtrunA17_Chr6g0480581 44.898 98 51 2 22 118 4 99 1.81e-22 92.8
Msa0169340 MtrunA17_Chr5g0397841 50.000 96 45 2 22 116 110 203 2.95e-22 95.5
Msa0169340 MtrunA17_Chr4g0042501 38.095 126 74 3 22 145 105 228 6.26e-22 94.0
Msa0169340 MtrunA17_Chr7g0229101 56.338 71 31 0 51 121 3 73 1.58e-21 89.7
Msa0169340 MtrunA17_Chr7g0228531 45.361 97 51 2 22 118 220 314 1.82e-21 92.8
Msa0169340 MtrunA17_Chr3g0093811 54.795 73 33 0 51 123 13 85 4.21e-21 89.7
Msa0169340 MtrunA17_Chr6g0460661 39.796 98 56 2 22 118 16 111 5.12e-21 87.0
Msa0169340 MtrunA17_Chr6g0453751 48.889 90 37 2 21 101 21 110 5.93e-21 85.9
Msa0169340 MtrunA17_Chr7g0238651 44.554 101 53 2 25 123 10 109 1.02e-20 90.1
Msa0169340 MtrunA17_Chr7g0229131 52.778 72 34 0 51 122 3 74 2.65e-20 85.5
Msa0169340 MtrunA17_Chr5g0434901 52.113 71 34 0 51 121 4 74 1.37e-19 82.0
Msa0169340 MtrunA17_Chr3g0125801 43.689 103 55 2 22 123 16 116 3.50e-19 84.7
Msa0169340 MtrunA17_Chr6g0460671 34.328 134 78 3 8 140 92 216 1.10e-18 84.3
Msa0169340 MtrunA17_Chr7g0254261 44.898 98 51 2 22 118 89 184 1.33e-18 84.0
Msa0169340 MtrunA17_Chr7g0228481 39.474 114 64 3 22 132 220 331 1.08e-17 82.0
Msa0169340 MtrunA17_Chr1g0177901 41.379 87 50 1 32 118 4 89 1.52e-17 79.0
Msa0169340 MtrunA17_Chr8g0362231 39.450 109 65 1 25 133 25 132 4.51e-17 80.1
Msa0169340 MtrunA17_Chr7g0233061 38.000 100 53 3 22 118 180 273 8.62e-17 79.0
Msa0169340 MtrunA17_Chr5g0416341 37.624 101 62 1 25 125 29 128 1.28e-16 79.0
Msa0169340 MtrunA17_Chr7g0228401 41.379 87 48 2 33 118 290 374 1.67e-15 75.9
Msa0169340 MtrunA17_Chr1g0193901 47.059 85 43 2 19 101 10 94 3.22e-14 67.4
Msa0169340 MtrunA17_Chr1g0193891 47.059 85 43 2 19 101 10 94 3.22e-14 67.4
Msa0169340 MtrunA17_Chr1g0193871 47.059 85 43 2 19 101 10 94 3.22e-14 67.4
Msa0169340 MtrunA17_Chr1g0193881 47.059 85 43 2 19 101 10 94 3.22e-14 67.4
Msa0169340 MtrunA17_Chr5g0434871 59.524 42 17 0 82 123 2 43 2.74e-11 58.2
Msa0169340 MtrunA17_Chr5g0395231 29.762 168 92 5 96 263 15 156 9.86e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169340 AT3G24310.1 56.031 257 102 5 17 264 15 269 2.47e-83 251
Msa0169340 AT4G13480.1 50.185 271 104 6 15 264 1 261 3.23e-81 245
Msa0169340 AT3G30210.1 50.685 219 89 4 21 239 28 227 2.68e-62 197
Msa0169340 AT1G48000.1 71.429 105 30 0 21 125 33 137 9.84e-52 169
Msa0169340 AT3G27810.1 66.667 105 35 0 21 125 21 125 2.71e-50 165
Msa0169340 AT5G59780.3 63.964 111 40 0 15 125 3 113 3.16e-50 165
Msa0169340 AT3G46130.1 64.286 112 40 0 14 125 3 114 3.76e-50 166
Msa0169340 AT5G40350.1 67.647 102 33 0 21 122 18 119 1.78e-49 162
Msa0169340 AT2G47190.1 61.261 111 43 0 16 126 16 126 1.78e-48 162
Msa0169340 AT3G01530.1 60.526 114 45 0 16 129 21 134 1.82e-48 159
Msa0169340 AT1G68320.1 64.762 105 37 0 21 125 20 124 3.84e-48 161
Msa0169340 AT1G25340.1 62.857 105 39 0 21 125 19 123 9.35e-47 157
Msa0169340 AT2G16720.1 52.482 141 65 1 14 154 6 144 2.01e-46 156
Msa0169340 AT3G53200.1 62.617 107 40 0 17 123 6 112 6.68e-46 154
Msa0169340 AT4G09460.1 40.404 198 102 3 22 219 14 195 2.02e-45 152
Msa0169340 AT4G34990.1 44.624 186 77 3 14 176 6 188 2.14e-45 154
Msa0169340 AT1G22640.1 64.706 102 36 0 22 123 14 115 5.19e-45 152
Msa0169340 AT1G06180.1 58.407 113 47 0 21 133 13 125 5.59e-45 152
Msa0169340 AT5G49620.1 66.964 112 37 0 14 125 20 131 1.42e-44 152
Msa0169340 AT5G26660.1 61.062 113 44 0 13 125 5 117 1.50e-44 154
Msa0169340 AT1G35515.1 60.177 113 45 0 14 126 6 118 1.75e-44 149
Msa0169340 AT5G14750.1 58.491 106 44 0 18 123 14 119 2.05e-44 149
Msa0169340 AT4G38620.1 40.722 194 105 3 14 207 6 189 2.10e-44 151
Msa0169340 AT5G16770.4 59.259 108 44 0 16 123 8 115 2.22e-44 152
Msa0169340 AT5G16770.3 59.259 108 44 0 16 123 8 115 2.22e-44 152
Msa0169340 AT3G06490.1 67.619 105 34 0 21 125 20 124 2.94e-44 152
Msa0169340 AT5G10280.1 58.182 110 46 0 14 123 6 115 3.05e-44 152
Msa0169340 AT5G16770.1 59.259 108 44 0 16 123 8 115 4.26e-44 152
Msa0169340 AT5G16770.2 59.259 108 44 0 16 123 8 115 4.26e-44 152
Msa0169340 AT4G28110.1 59.223 103 42 0 21 123 13 115 6.07e-44 150
Msa0169340 AT5G65230.1 60.185 108 43 0 16 123 8 115 6.51e-44 151
Msa0169340 AT5G54230.1 62.136 103 39 0 21 123 13 115 6.75e-44 151
Msa0169340 AT3G13540.1 63.107 103 38 0 21 123 24 126 9.90e-44 149
Msa0169340 AT4G21440.1 58.333 108 45 0 16 123 8 115 1.07e-43 151
Msa0169340 AT2G32460.1 57.759 116 49 0 10 125 8 123 1.08e-43 154
Msa0169340 AT5G07690.1 63.725 102 37 0 21 122 13 114 1.17e-43 151
Msa0169340 AT5G40330.1 56.481 108 47 0 16 123 8 115 1.55e-43 147
Msa0169340 AT4G12350.1 63.107 103 38 0 21 123 13 115 1.78e-43 149
Msa0169340 AT3G02940.2 59.259 108 44 0 16 123 8 115 2.08e-43 150
Msa0169340 AT4G05100.1 60.194 103 41 0 21 123 14 116 2.18e-43 150
Msa0169340 AT3G61250.1 60.194 103 41 0 21 123 13 115 2.98e-43 149
Msa0169340 AT5G07700.1 62.136 103 39 0 21 123 13 115 3.25e-43 150
Msa0169340 AT5G07700.2 62.136 103 39 0 21 123 13 115 3.25e-43 150
Msa0169340 AT3G02940.1 59.259 108 44 0 16 123 8 115 3.73e-43 149
Msa0169340 AT3G02940.3 59.259 108 44 0 16 123 8 115 3.73e-43 149
Msa0169340 AT5G61420.2 62.136 103 39 0 21 123 13 115 4.13e-43 150
Msa0169340 AT3G01140.2 64.078 103 37 0 21 123 13 115 4.28e-43 150
Msa0169340 AT2G31180.1 61.165 103 40 0 21 123 13 115 5.22e-43 147
Msa0169340 AT1G18570.1 63.107 103 38 0 21 123 14 116 5.33e-43 150
Msa0169340 AT5G15310.4 63.107 103 38 0 21 123 13 115 5.60e-43 147
Msa0169340 AT1G34670.1 59.259 108 44 0 16 123 8 115 5.79e-43 150
Msa0169340 AT3G11440.2 62.136 103 39 0 21 123 42 144 6.46e-43 152
Msa0169340 AT4G22680.1 62.136 103 39 0 21 123 13 115 8.20e-43 147
Msa0169340 AT3G01140.1 64.078 103 37 0 21 123 56 158 9.64e-43 150
Msa0169340 AT3G47600.1 56.303 119 52 0 21 139 13 131 9.84e-43 149
Msa0169340 AT1G66230.1 48.252 143 73 1 21 162 13 155 9.99e-43 147
Msa0169340 AT5G15310.1 63.107 103 38 0 21 123 13 115 1.18e-42 148
Msa0169340 AT3G27920.1 54.622 119 54 0 16 134 10 128 1.24e-42 145
Msa0169340 AT5G15310.2 63.107 103 38 0 21 123 13 115 1.42e-42 147
Msa0169340 AT1G57560.1 53.333 135 54 1 13 138 5 139 1.58e-42 147
Msa0169340 AT2G32460.2 60.952 105 41 0 21 125 7 111 1.62e-42 151
Msa0169340 AT1G57560.2 59.459 111 45 0 13 123 5 115 2.23e-42 146
Msa0169340 AT5G06100.1 62.136 103 39 0 21 123 33 135 2.52e-42 150
Msa0169340 AT3G11440.3 62.136 103 39 0 21 123 42 144 3.19e-42 152
Msa0169340 AT3G11440.4 62.136 103 39 0 21 123 42 144 3.19e-42 152
Msa0169340 AT3G11440.1 62.136 103 39 0 21 123 42 144 3.19e-42 152
Msa0169340 AT5G60890.1 58.182 110 46 0 16 125 8 117 3.32e-42 146
Msa0169340 AT5G16600.1 44.970 169 73 2 21 169 13 181 3.52e-42 147
Msa0169340 AT1G25340.2 60.000 105 37 1 21 125 19 118 4.12e-42 145
Msa0169340 AT5G62470.2 48.684 152 67 2 21 161 13 164 4.73e-42 147
Msa0169340 AT1G09540.1 59.292 113 46 0 13 125 5 117 5.16e-42 147
Msa0169340 AT5G06100.5 62.136 103 39 0 21 123 33 135 9.09e-42 150
Msa0169340 AT5G06100.2 62.136 103 39 0 21 123 33 135 9.09e-42 150
Msa0169340 AT5G06100.3 62.136 103 39 0 21 123 33 135 9.09e-42 150
Msa0169340 AT5G06100.4 62.136 103 39 0 21 123 33 135 9.09e-42 150
Msa0169340 AT1G25340.3 60.000 105 37 1 21 125 19 118 9.27e-42 145
Msa0169340 AT3G23250.1 52.137 117 56 0 21 137 13 129 1.71e-41 144
Msa0169340 AT3G62610.1 60.194 103 41 0 21 123 13 115 2.61e-41 145
Msa0169340 AT4G01680.3 58.407 113 47 0 13 125 5 117 2.91e-41 142
Msa0169340 AT1G74080.1 62.745 102 38 0 21 122 13 114 3.03e-41 145
Msa0169340 AT5G62320.1 59.091 110 38 1 21 123 14 123 4.71e-41 142
Msa0169340 AT2G26960.1 62.136 103 39 0 20 122 20 122 4.95e-41 146
Msa0169340 AT5G49620.2 59.524 126 37 1 14 125 20 145 6.45e-41 143
Msa0169340 AT3G13890.2 54.955 111 50 0 13 123 5 115 7.31e-41 144
Msa0169340 AT4G17785.2 61.165 103 40 0 21 123 14 116 8.47e-41 144
Msa0169340 AT4G01680.1 58.407 113 47 0 13 125 5 117 9.24e-41 143
Msa0169340 AT5G49330.1 61.165 103 40 0 21 123 13 115 9.28e-41 144
Msa0169340 AT4G17785.1 61.165 103 40 0 21 123 14 116 1.05e-40 144
Msa0169340 AT1G08810.1 54.098 122 55 1 21 142 13 133 1.37e-40 141
Msa0169340 AT2G47460.1 58.491 106 44 0 21 126 13 118 2.02e-40 143
Msa0169340 AT5G52600.1 58.252 103 43 0 21 123 13 115 5.39e-40 137
Msa0169340 AT1G79180.1 53.509 114 53 0 21 134 15 128 9.64e-40 140
Msa0169340 AT1G74650.1 60.194 103 41 0 21 123 13 115 1.06e-39 140
Msa0169340 AT5G62470.1 48.026 152 67 3 21 161 13 163 1.36e-39 140
Msa0169340 AT3G12720.1 55.340 103 46 0 21 123 23 125 1.54e-39 139
Msa0169340 AT1G56160.1 52.727 110 52 0 14 123 8 117 1.65e-39 139
Msa0169340 AT5G12870.1 53.390 118 55 0 13 130 11 128 1.75e-39 139
Msa0169340 AT1G63910.1 53.043 115 54 0 13 127 5 119 2.42e-39 140
Msa0169340 AT3G08500.1 57.944 107 45 0 19 125 29 135 3.27e-39 139
Msa0169340 AT5G55020.1 59.804 102 41 0 21 122 27 128 3.46e-39 143
Msa0169340 AT3G48920.1 58.491 106 44 0 17 122 15 120 6.21e-39 137
Msa0169340 AT1G74430.1 53.448 116 52 1 8 123 2 115 1.39e-38 136
Msa0169340 AT4G25560.1 57.547 106 45 0 18 123 8 113 1.55e-38 136
Msa0169340 AT1G16490.1 55.340 103 46 0 21 123 15 117 2.19e-38 135
Msa0169340 AT3G28910.1 58.252 103 43 0 21 123 13 115 2.51e-38 137
Msa0169340 AT4G26930.1 48.227 141 66 2 21 159 20 155 2.58e-38 138
Msa0169340 AT5G35550.1 56.863 102 44 0 22 123 16 117 3.04e-38 135
Msa0169340 AT3G13890.1 50.833 120 50 1 13 123 5 124 7.30e-38 137
Msa0169340 AT5G14340.1 58.491 106 44 0 21 126 25 130 9.64e-38 134
Msa0169340 AT4G01680.2 52.800 125 47 1 13 125 5 129 1.22e-37 135
Msa0169340 AT3G12820.1 50.862 116 57 0 8 123 2 117 1.48e-37 132
Msa0169340 AT3G28470.1 58.163 98 41 0 21 118 13 110 2.59e-37 134
Msa0169340 AT5G56110.1 56.481 108 47 0 16 123 8 115 2.67e-37 134
Msa0169340 AT5G52260.1 58.095 105 44 0 19 123 11 115 4.70e-37 132
Msa0169340 AT4G37780.1 44.218 147 74 2 21 166 13 152 7.06e-37 132
Msa0169340 AT3G46130.3 74.324 74 19 0 52 125 9 82 1.39e-35 127
Msa0169340 AT5G59780.2 64.835 91 28 1 35 125 6 92 1.44e-35 127
Msa0169340 AT3G46130.4 65.169 89 27 1 37 125 8 92 1.97e-35 127
Msa0169340 AT5G23000.1 52.252 111 52 1 14 123 6 116 4.41e-35 128
Msa0169340 AT5G65790.1 45.324 139 63 2 21 158 13 139 1.00e-34 128
Msa0169340 AT1G66370.1 46.043 139 55 2 21 139 9 147 1.18e-34 125
Msa0169340 AT5G57620.1 43.590 156 74 3 21 162 13 168 3.00e-34 126
Msa0169340 AT3G27810.2 69.863 73 22 0 53 125 4 76 3.50e-34 122
Msa0169340 AT3G49690.1 54.206 107 48 1 21 126 13 119 3.84e-34 125
Msa0169340 AT3G53200.2 73.239 71 19 0 53 123 9 79 6.81e-34 122
Msa0169340 AT2G36890.1 54.808 104 46 1 21 123 13 116 9.17e-34 124
Msa0169340 AT1G18710.1 49.138 116 57 1 8 123 2 115 1.63e-33 123
Msa0169340 AT2G36890.2 54.808 104 46 1 21 123 54 157 1.91e-33 124
Msa0169340 AT1G79180.2 41.497 147 53 1 21 134 15 161 2.90e-33 124
Msa0169340 AT5G40350.2 70.000 70 21 0 53 122 5 74 8.12e-33 118
Msa0169340 AT1G66380.1 55.340 103 46 0 21 123 9 111 1.74e-31 114
Msa0169340 AT1G56650.1 55.340 103 46 0 21 123 9 111 1.94e-31 117
Msa0169340 AT3G60460.1 50.485 103 50 1 21 122 12 114 5.10e-31 117
Msa0169340 AT5G26660.2 69.863 73 22 0 53 125 14 86 7.43e-31 117
Msa0169340 AT1G66390.1 55.340 103 46 0 21 123 9 111 8.45e-31 115
Msa0169340 AT2G26950.1 51.546 97 47 0 20 116 16 112 1.58e-30 117
Msa0169340 AT3G47600.2 60.714 84 33 0 53 136 39 122 5.51e-29 112
Msa0169340 AT4G37260.1 42.748 131 70 3 22 149 13 141 6.83e-28 109
Msa0169340 AT3G27785.1 54.167 96 41 2 22 116 189 282 8.06e-28 110
Msa0169340 AT2G23290.1 48.696 115 55 3 10 123 2 113 1.44e-27 108
Msa0169340 AT5G14750.3 63.235 68 25 0 56 123 18 85 2.94e-27 103
Msa0169340 AT3G12820.2 64.706 68 24 0 56 123 2 69 4.91e-27 103
Msa0169340 AT2G39880.1 49.038 104 50 2 22 124 50 151 8.24e-27 107
Msa0169340 AT5G58850.1 47.826 115 52 3 22 130 105 217 2.54e-26 106
Msa0169340 AT3G09230.1 46.552 116 55 3 22 136 55 164 2.57e-26 106
Msa0169340 AT5G35550.2 57.895 76 32 0 48 123 45 120 4.46e-26 103
Msa0169340 AT5G02320.1 48.544 103 50 2 22 123 127 227 7.12e-26 106
Msa0169340 AT5G02320.1 37.864 103 62 2 19 120 72 173 4.35e-13 69.3
Msa0169340 AT5G02320.2 48.544 103 50 2 22 123 127 227 7.12e-26 106
Msa0169340 AT5G02320.2 37.864 103 62 2 19 120 72 173 4.35e-13 69.3
Msa0169340 AT5G02320.3 48.544 103 50 2 22 123 67 167 9.27e-26 105
Msa0169340 AT5G02320.3 37.864 103 62 2 19 120 12 113 5.78e-13 68.6
Msa0169340 AT5G11510.5 35.526 152 89 3 22 172 81 224 1.88e-25 105
Msa0169340 AT5G11510.5 34.951 103 65 2 19 120 26 127 5.42e-12 65.9
Msa0169340 AT5G11510.2 35.526 152 89 3 22 172 81 224 2.11e-25 105
Msa0169340 AT5G11510.2 34.951 103 65 2 19 120 26 127 5.62e-12 65.9
Msa0169340 AT5G11510.3 35.526 152 89 3 22 172 81 224 2.25e-25 105
Msa0169340 AT5G11510.3 34.951 103 65 2 19 120 26 127 6.10e-12 65.9
Msa0169340 AT5G11510.1 35.526 152 89 3 22 172 81 224 2.25e-25 105
Msa0169340 AT5G11510.1 34.951 103 65 2 19 120 26 127 6.10e-12 65.9
Msa0169340 AT5G11510.4 35.526 152 89 3 22 172 81 224 2.25e-25 105
Msa0169340 AT5G11510.4 34.951 103 65 2 19 120 26 127 6.10e-12 65.9
Msa0169340 AT3G09370.2 46.667 105 53 2 22 125 135 237 2.94e-25 104
Msa0169340 AT3G09370.2 36.893 103 63 2 19 120 80 181 1.15e-11 64.7
Msa0169340 AT3G09370.1 46.667 105 53 2 22 125 130 232 3.29e-25 104
Msa0169340 AT3G09370.1 36.893 103 63 2 19 120 75 176 1.25e-11 64.7
Msa0169340 AT3G09370.3 46.667 105 53 2 22 125 143 245 3.78e-25 104
Msa0169340 AT3G09370.3 36.893 103 63 2 19 120 88 189 1.03e-11 65.1
Msa0169340 AT4G18770.1 42.735 117 60 3 12 123 207 321 6.01e-25 102
Msa0169340 AT3G55730.1 45.631 103 53 2 22 123 56 156 9.20e-25 102
Msa0169340 AT5G11050.1 44.828 116 59 3 22 136 105 216 1.18e-24 102
Msa0169340 AT3G50060.1 44.660 103 54 2 22 123 6 106 5.49e-24 98.6
Msa0169340 AT5G67300.1 45.631 103 53 2 22 123 6 106 1.88e-23 97.1
Msa0169340 AT4G32730.1 44.660 103 54 2 22 123 87 187 2.62e-23 99.4
Msa0169340 AT4G32730.1 31.356 118 79 2 4 120 17 133 2.61e-12 67.0
Msa0169340 AT4G32730.5 44.660 103 54 2 22 123 87 187 2.83e-23 99.4
Msa0169340 AT4G32730.5 31.356 118 79 2 4 120 17 133 3.24e-12 66.6
Msa0169340 AT4G32730.4 44.660 103 54 2 22 123 87 187 2.83e-23 99.4
Msa0169340 AT4G32730.4 31.356 118 79 2 4 120 17 133 3.24e-12 66.6
Msa0169340 AT4G32730.3 44.660 103 54 2 22 123 87 187 2.83e-23 99.4
Msa0169340 AT4G32730.3 31.356 118 79 2 4 120 17 133 3.24e-12 66.6
Msa0169340 AT4G32730.2 44.660 103 54 2 22 123 87 187 2.83e-23 99.4
Msa0169340 AT4G32730.2 31.356 118 79 2 4 120 17 133 3.24e-12 66.6
Msa0169340 AT1G69560.1 40.870 115 65 2 22 135 107 219 4.93e-23 96.3
Msa0169340 AT1G69560.2 40.870 115 65 2 22 135 123 235 5.54e-23 96.7
Msa0169340 AT5G40360.1 45.263 95 51 1 22 116 158 251 7.67e-23 96.3
Msa0169340 AT1G17950.1 47.917 96 47 2 22 116 5 98 1.33e-22 93.6
Msa0169340 AT1G26780.1 40.000 115 66 2 22 135 98 210 1.97e-22 94.0
Msa0169340 AT1G26780.2 40.000 115 66 2 22 135 98 210 3.74e-22 94.4
Msa0169340 AT1G73410.1 43.519 108 58 2 22 128 6 111 1.81e-21 90.5
Msa0169340 AT1G73410.2 43.519 108 58 2 22 128 6 111 2.21e-21 89.4
Msa0169340 AT1G22640.3 63.793 58 21 0 66 123 1 58 2.30e-21 89.4
Msa0169340 AT5G17800.1 43.269 104 58 1 22 125 93 195 2.66e-21 91.7
Msa0169340 AT3G23250.2 52.778 72 34 0 66 137 1 72 8.68e-21 88.6
Msa0169340 AT3G29020.1 40.000 110 63 2 22 130 65 172 9.08e-21 88.6
Msa0169340 AT1G66380.3 54.545 77 35 0 47 123 2 78 1.02e-20 84.7
Msa0169340 AT4G33450.1 41.176 119 66 3 22 138 19 135 1.82e-20 88.2
Msa0169340 AT3G29020.2 40.000 110 63 2 22 130 67 174 3.01e-20 88.6
Msa0169340 AT5G59780.1 75.000 48 12 0 78 125 1 48 3.01e-20 85.5
Msa0169340 AT5G14750.4 58.621 58 24 0 66 123 1 58 4.54e-20 84.3
Msa0169340 AT5G14750.2 58.621 58 24 0 66 123 1 58 4.54e-20 84.3
Msa0169340 AT3G46130.2 75.000 48 12 0 78 125 1 48 7.60e-20 85.1
Msa0169340 AT2G25230.1 43.158 95 51 2 25 118 29 121 4.71e-19 84.0
Msa0169340 AT1G71030.1 47.500 80 41 1 44 123 5 83 1.04e-18 82.0
Msa0169340 AT1G71030.2 53.846 65 30 0 59 123 5 69 1.14e-18 81.6
Msa0169340 AT2G37630.1 41.584 101 56 2 25 123 7 106 1.22e-18 84.7
Msa0169340 AT4G00540.2 45.283 106 52 3 22 123 103 206 3.42e-18 83.6
Msa0169340 AT4G00540.1 45.283 106 52 3 22 123 101 204 6.19e-18 83.2
Msa0169340 AT1G66380.2 48.750 80 41 0 21 100 9 88 9.87e-18 77.0
Msa0169340 AT1G18960.1 39.216 102 59 2 22 123 10 108 1.99e-17 80.5
Msa0169340 AT1G14350.2 35.897 117 72 2 25 141 28 141 2.90e-16 78.2
Msa0169340 AT1G14350.1 35.897 117 72 2 25 141 28 141 2.90e-16 78.2
Msa0169340 AT2G02820.3 34.259 108 70 1 25 132 33 139 1.51e-15 75.5
Msa0169340 AT2G02820.2 37.143 105 59 2 25 126 33 133 1.88e-15 76.3
Msa0169340 AT2G02820.1 37.143 105 59 2 25 126 33 133 2.03e-15 75.9
Msa0169340 AT5G39700.1 38.776 98 59 1 21 118 55 151 7.55e-15 71.2
Msa0169340 AT5G40430.1 39.048 105 59 4 25 128 57 157 1.30e-14 72.0
Msa0169340 AT4G25560.2 63.043 46 17 0 78 123 2 47 4.91e-14 69.7
Msa0169340 AT3G18100.4 33.333 123 72 3 2 117 360 479 2.61e-12 67.0
Msa0169340 AT3G18100.2 32.540 126 75 3 2 120 308 430 3.23e-12 66.6
Msa0169340 AT3G18100.3 32.540 126 75 3 2 120 473 595 3.57e-12 66.6
Msa0169340 AT3G18100.1 33.333 123 72 3 2 117 521 640 3.63e-12 66.6
Msa0169340 AT5G61420.1 74.286 35 9 0 89 123 2 36 3.02e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTTAAGGTCTGGTCTT+AGG 0.259563 1_4:+52554431 None:intergenic
ATTTCTTTCAATATGTATTC+AGG 0.268017 1_4:-52554893 None:intergenic
AACTCTGTCTCTAGGCTTGC+AGG 0.297134 1_4:-52554746 Msa0169340:intron
GTGTTATCTGACCCTTCTTA+AGG 0.320325 1_4:+52554419 None:intergenic
ATCTCATTGTCAGTTCTTCC+CGG 0.346112 1_4:+52554188 None:intergenic
AACAATTGCAAGAAGCTTGC+CGG 0.352730 1_4:-52554207 Msa0169340:CDS
TTTACAGGGCTGAGAAGAAA+TGG 0.355023 1_4:-52554484 Msa0169340:intron
GTGTAATGGAAGAAGATAGA+TGG 0.371974 1_4:-52554844 Msa0169340:CDS
ATCTGACCCTTCTTAAGGTC+TGG 0.379207 1_4:+52554424 None:intergenic
AGAATTTGTGGGATGAACTT+TGG 0.380605 1_4:-52553818 Msa0169340:CDS
TGCTGATACACAAGAACAAC+AGG 0.383909 1_4:-52553907 Msa0169340:CDS
TGGAACTTGGATGATGCTCT+TGG 0.418349 1_4:-52553798 Msa0169340:CDS
ACAATGAGATAAAGAACTAT+TGG 0.425896 1_4:-52554175 Msa0169340:CDS
CCCCTCTGATAGTGCTGAAA+AGG 0.431504 1_4:-52554123 Msa0169340:CDS
TACATGCTAGGTGGGGAAAC+AGG 0.437338 1_4:-52554369 Msa0169340:intron
TTCTCAAGAGACACAAGAAA+TGG 0.446329 1_4:-52553940 Msa0169340:CDS
ACTACATTGTGCACATTGGC+TGG 0.456615 1_4:+52553744 None:intergenic
CTTCAAATGAAGAGAATTTG+TGG 0.464547 1_4:-52553830 Msa0169340:CDS
TTCTTGTGTATCAGCATACA+TGG 0.469010 1_4:+52553914 None:intergenic
CAATATGTATTCAGGAATGA+TGG 0.474198 1_4:-52554885 None:intergenic
TTACAGGGCTGAGAAGAAAT+GGG 0.476247 1_4:-52554483 Msa0169340:intron
GTGGGATGAACTTTGGAACT+TGG 0.486294 1_4:-52553811 Msa0169340:CDS
TGTGTCTCTTGAGAAGTAGA+AGG 0.496024 1_4:+52553948 None:intergenic
CCTAGAGCTACATGCTAGGT+GGG 0.498599 1_4:-52554377 Msa0169340:CDS
AGCTGCATGGTGAAGGCAGA+TGG 0.509674 1_4:-52554769 Msa0169340:CDS
ATGAGATAAAGAACTATTGG+AGG 0.513857 1_4:-52554172 Msa0169340:CDS
ACAATTGCAAGAAGCTTGCC+GGG 0.514007 1_4:-52554206 Msa0169340:CDS
TTCAAATGAAGAGAATTTGT+GGG 0.514100 1_4:-52553829 Msa0169340:CDS
CCCACCTAGCATGTAGCTCT+AGG 0.519377 1_4:+52554377 None:intergenic
CCTAAGACCAGACCTTAAGA+AGG 0.523078 1_4:-52554431 Msa0169340:CDS
CAATACAACATGGATATGAA+AGG 0.529980 1_4:-52554017 Msa0169340:CDS
TCTATGCTCAATGATAATAG+TGG 0.536144 1_4:-52553873 Msa0169340:CDS
AATACAACATGGATATGAAA+GGG 0.545056 1_4:-52554016 Msa0169340:CDS
GCAGATGGAACTCTGTCTCT+AGG 0.556467 1_4:-52554754 Msa0169340:CDS
ATAGATGGAGGAAAGGACCT+TGG 0.564310 1_4:-52554829 Msa0169340:CDS
GAAGAAGATAGATGGAGGAA+AGG 0.569212 1_4:-52554836 Msa0169340:CDS
GGAAAAGTTGTAGACTGAGA+TGG 0.570618 1_4:-52554462 Msa0169340:CDS
GGAATGATGGAAGGAAACAC+TGG 0.575742 1_4:-52554872 Msa0169340:CDS
AAACACTGGATGGAGTGTAA+TGG 0.585481 1_4:-52554858 Msa0169340:CDS
GAAAAGTTGTAGACTGAGAT+GGG 0.586925 1_4:-52554461 Msa0169340:CDS
GAAAGGACCTTGGACTTCTG+AGG 0.594052 1_4:-52554819 Msa0169340:CDS
GATCATAGACTTGTTGCTTG+AGG 0.595685 1_4:-52553994 Msa0169340:CDS
TAATGGAAGAAGATAGATGG+AGG 0.601607 1_4:-52554841 Msa0169340:CDS
ATGTATTCAGGAATGATGGA+AGG 0.607186 1_4:-52554881 Msa0169340:CDS
TTGTCTTCCTCAGAAGTCCA+AGG 0.607855 1_4:+52554812 None:intergenic
TATGTCAAGCTGCATGGTGA+AGG 0.610102 1_4:-52554776 Msa0169340:CDS
TGATGGAAGGAAACACTGGA+TGG 0.616620 1_4:-52554868 Msa0169340:CDS
TCCTAGAGCTACATGCTAGG+TGG 0.619467 1_4:-52554378 Msa0169340:CDS
AGCAACTACATTGTGCACAT+TGG 0.622143 1_4:+52553740 None:intergenic
TAATCCTAGAGCTACATGCT+AGG 0.625705 1_4:-52554381 Msa0169340:CDS
CTAAGACCAGACCTTAAGAA+GGG 0.632926 1_4:-52554430 Msa0169340:CDS
CTAGAGCTACATGCTAGGTG+GGG 0.652296 1_4:-52554376 Msa0169340:CDS
ATTGAGTATGTCAAGCTGCA+TGG 0.654811 1_4:-52554782 Msa0169340:CDS
ACAACAACTGCAATACAACA+TGG 0.663800 1_4:-52554027 Msa0169340:CDS
GCTGATACACAAGAACAACA+GGG 0.786231 1_4:-52553906 Msa0169340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAGTAAAATTAAT+TGG - chr1_4:52554014-52554033 Msa0169340:CDS 10.0%
!! AAAATAATATATGATCAATA+AGG + chr1_4:52554107-52554126 None:intergenic 10.0%
!! AAATAACAAGTAAAATTAAT+TGG - chr1_4:52554014-52554033 Msa0169340:CDS 10.0%
!! AAAATAATATATGATCAATA+AGG + chr1_4:52554107-52554126 None:intergenic 10.0%
!! TAAGAATTGTAAGAAAAAAA+TGG + chr1_4:52554081-52554100 None:intergenic 15.0%
!!! TGATCATATATTATTTTTAC+AGG - chr1_4:52554110-52554129 Msa0169340:CDS 15.0%
!!! GATCATATATTATTTTTACA+GGG - chr1_4:52554111-52554130 Msa0169340:CDS 15.0%
!! TACTAAATAAAAAACATTTC+AGG - chr1_4:52554374-52554393 Msa0169340:CDS 15.0%
!! TAAGAATTGTAAGAAAAAAA+TGG + chr1_4:52554081-52554100 None:intergenic 15.0%
!!! TGATCATATATTATTTTTAC+AGG - chr1_4:52554110-52554129 Msa0169340:CDS 15.0%
!!! GATCATATATTATTTTTACA+GGG - chr1_4:52554111-52554130 Msa0169340:CDS 15.0%
!! TACTAAATAAAAAACATTTC+AGG - chr1_4:52554374-52554393 Msa0169340:CDS 15.0%
!! ACAAAAATGTGTATAAAGTT+TGG + chr1_4:52553905-52553924 None:intergenic 20.0%
!! AATTGGTATTAATTAAACCA+AGG + chr1_4:52553956-52553975 None:intergenic 20.0%
!! AATTGTAAGAAAAAAATGGA+TGG + chr1_4:52554077-52554096 None:intergenic 20.0%
!! TAAATAAAAAACATTTCAGG+TGG - chr1_4:52554377-52554396 Msa0169340:CDS 20.0%
!! ACAAAAATGTGTATAAAGTT+TGG + chr1_4:52553905-52553924 None:intergenic 20.0%
!! AATTGGTATTAATTAAACCA+AGG + chr1_4:52553956-52553975 None:intergenic 20.0%
!! AATTGTAAGAAAAAAATGGA+TGG + chr1_4:52554077-52554096 None:intergenic 20.0%
!! TAAATAAAAAACATTTCAGG+TGG - chr1_4:52554377-52554396 Msa0169340:CDS 20.0%
! CAATTTACCAAGTAGAAATT+TGG + chr1_4:52554042-52554061 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG - chr1_4:52554434-52554453 Msa0169340:CDS 25.0%
! AATACAACATGGATATGAAA+GGG - chr1_4:52554593-52554612 Msa0169340:intron 25.0%
! TTCAAATGAAGAGAATTTGT+GGG - chr1_4:52554780-52554799 Msa0169340:CDS 25.0%
! CAATTTACCAAGTAGAAATT+TGG + chr1_4:52554042-52554061 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG - chr1_4:52554434-52554453 Msa0169340:CDS 25.0%
! AATACAACATGGATATGAAA+GGG - chr1_4:52554593-52554612 Msa0169340:intron 25.0%
! TTCAAATGAAGAGAATTTGT+GGG - chr1_4:52554780-52554799 Msa0169340:CDS 25.0%
! AAGGTACAAAGTACTATGTT+AGG + chr1_4:52553937-52553956 None:intergenic 30.0%
TAACATAGTACTTTGTACCT+TGG - chr1_4:52553936-52553955 Msa0169340:CDS 30.0%
ACTTCTAATGTGAAGTCAAT+TGG + chr1_4:52553973-52553992 None:intergenic 30.0%
ATGAGATAAAGAACTATTGG+AGG - chr1_4:52554437-52554456 Msa0169340:CDS 30.0%
CAATACAACATGGATATGAA+AGG - chr1_4:52554592-52554611 Msa0169340:intron 30.0%
TCTATGCTCAATGATAATAG+TGG - chr1_4:52554736-52554755 Msa0169340:intron 30.0%
CTTCAAATGAAGAGAATTTG+TGG - chr1_4:52554779-52554798 Msa0169340:CDS 30.0%
! AAGGTACAAAGTACTATGTT+AGG + chr1_4:52553937-52553956 None:intergenic 30.0%
TAACATAGTACTTTGTACCT+TGG - chr1_4:52553936-52553955 Msa0169340:CDS 30.0%
ACTTCTAATGTGAAGTCAAT+TGG + chr1_4:52553973-52553992 None:intergenic 30.0%
ATGAGATAAAGAACTATTGG+AGG - chr1_4:52554437-52554456 Msa0169340:CDS 30.0%
CAATACAACATGGATATGAA+AGG - chr1_4:52554592-52554611 Msa0169340:intron 30.0%
TCTATGCTCAATGATAATAG+TGG - chr1_4:52554736-52554755 Msa0169340:intron 30.0%
CTTCAAATGAAGAGAATTTG+TGG - chr1_4:52554779-52554798 Msa0169340:CDS 30.0%
! ATGTATTCAGGAATGATGGA+AGG - chr1_4:52553728-52553747 Msa0169340:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG - chr1_4:52553765-52553784 Msa0169340:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG - chr1_4:52553768-52553787 Msa0169340:CDS 35.0%
! ATTGGCTCCAAATTTCTACT+TGG - chr1_4:52554032-52554051 Msa0169340:CDS 35.0%
GAAAAGTTGTAGACTGAGAT+GGG - chr1_4:52554148-52554167 Msa0169340:CDS 35.0%
CTAGAAACACGTAAGTTCAA+GGG + chr1_4:52554284-52554303 None:intergenic 35.0%
TCTAGAAACACGTAAGTTCA+AGG + chr1_4:52554285-52554304 None:intergenic 35.0%
CGAAAAATCGTTCTTTCAAG+AGG - chr1_4:52554509-52554528 Msa0169340:intron 35.0%
ACAACAACTGCAATACAACA+TGG - chr1_4:52554582-52554601 Msa0169340:intron 35.0%
TTCTCAAGAGACACAAGAAA+TGG - chr1_4:52554669-52554688 Msa0169340:intron 35.0%
TTCTTGTGTATCAGCATACA+TGG + chr1_4:52554698-52554717 None:intergenic 35.0%
AGAATTTGTGGGATGAACTT+TGG - chr1_4:52554791-52554810 Msa0169340:CDS 35.0%
! ATGTATTCAGGAATGATGGA+AGG - chr1_4:52553728-52553747 Msa0169340:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG - chr1_4:52553765-52553784 Msa0169340:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG - chr1_4:52553768-52553787 Msa0169340:CDS 35.0%
! ATTGGCTCCAAATTTCTACT+TGG - chr1_4:52554032-52554051 Msa0169340:CDS 35.0%
GAAAAGTTGTAGACTGAGAT+GGG - chr1_4:52554148-52554167 Msa0169340:CDS 35.0%
CTAGAAACACGTAAGTTCAA+GGG + chr1_4:52554284-52554303 None:intergenic 35.0%
TCTAGAAACACGTAAGTTCA+AGG + chr1_4:52554285-52554304 None:intergenic 35.0%
CGAAAAATCGTTCTTTCAAG+AGG - chr1_4:52554509-52554528 Msa0169340:intron 35.0%
ACAACAACTGCAATACAACA+TGG - chr1_4:52554582-52554601 Msa0169340:intron 35.0%
TTCTCAAGAGACACAAGAAA+TGG - chr1_4:52554669-52554688 Msa0169340:intron 35.0%
TTCTTGTGTATCAGCATACA+TGG + chr1_4:52554698-52554717 None:intergenic 35.0%
AGAATTTGTGGGATGAACTT+TGG - chr1_4:52554791-52554810 Msa0169340:CDS 35.0%
AAACACTGGATGGAGTGTAA+TGG - chr1_4:52553751-52553770 Msa0169340:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG - chr1_4:52553773-52553792 Msa0169340:CDS 40.0%
ATTGAGTATGTCAAGCTGCA+TGG - chr1_4:52553827-52553846 Msa0169340:CDS 40.0%
TTTACAGGGCTGAGAAGAAA+TGG - chr1_4:52554125-52554144 Msa0169340:CDS 40.0%
TTACAGGGCTGAGAAGAAAT+GGG - chr1_4:52554126-52554145 Msa0169340:CDS 40.0%
GGAAAAGTTGTAGACTGAGA+TGG - chr1_4:52554147-52554166 Msa0169340:CDS 40.0%
CTAAGACCAGACCTTAAGAA+GGG - chr1_4:52554179-52554198 Msa0169340:CDS 40.0%
GTGTTATCTGACCCTTCTTA+AGG + chr1_4:52554193-52554212 None:intergenic 40.0%
TAATCCTAGAGCTACATGCT+AGG - chr1_4:52554228-52554247 Msa0169340:intron 40.0%
AACAATTGCAAGAAGCTTGC+CGG - chr1_4:52554402-52554421 Msa0169340:CDS 40.0%
ATCTCATTGTCAGTTCTTCC+CGG + chr1_4:52554424-52554443 None:intergenic 40.0%
!! GATCATAGACTTGTTGCTTG+AGG - chr1_4:52554615-52554634 Msa0169340:intron 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG + chr1_4:52554664-52554683 None:intergenic 40.0%
TGCTGATACACAAGAACAAC+AGG - chr1_4:52554702-52554721 Msa0169340:intron 40.0%
GCTGATACACAAGAACAACA+GGG - chr1_4:52554703-52554722 Msa0169340:intron 40.0%
AGCAACTACATTGTGCACAT+TGG + chr1_4:52554872-52554891 None:intergenic 40.0%
AAACACTGGATGGAGTGTAA+TGG - chr1_4:52553751-52553770 Msa0169340:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG - chr1_4:52553773-52553792 Msa0169340:CDS 40.0%
ATTGAGTATGTCAAGCTGCA+TGG - chr1_4:52553827-52553846 Msa0169340:CDS 40.0%
TTTACAGGGCTGAGAAGAAA+TGG - chr1_4:52554125-52554144 Msa0169340:CDS 40.0%
TTACAGGGCTGAGAAGAAAT+GGG - chr1_4:52554126-52554145 Msa0169340:CDS 40.0%
GGAAAAGTTGTAGACTGAGA+TGG - chr1_4:52554147-52554166 Msa0169340:CDS 40.0%
CTAAGACCAGACCTTAAGAA+GGG - chr1_4:52554179-52554198 Msa0169340:CDS 40.0%
GTGTTATCTGACCCTTCTTA+AGG + chr1_4:52554193-52554212 None:intergenic 40.0%
TAATCCTAGAGCTACATGCT+AGG - chr1_4:52554228-52554247 Msa0169340:intron 40.0%
AACAATTGCAAGAAGCTTGC+CGG - chr1_4:52554402-52554421 Msa0169340:CDS 40.0%
ATCTCATTGTCAGTTCTTCC+CGG + chr1_4:52554424-52554443 None:intergenic 40.0%
!! GATCATAGACTTGTTGCTTG+AGG - chr1_4:52554615-52554634 Msa0169340:intron 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG + chr1_4:52554664-52554683 None:intergenic 40.0%
TGCTGATACACAAGAACAAC+AGG - chr1_4:52554702-52554721 Msa0169340:intron 40.0%
GCTGATACACAAGAACAACA+GGG - chr1_4:52554703-52554722 Msa0169340:intron 40.0%
AGCAACTACATTGTGCACAT+TGG + chr1_4:52554872-52554891 None:intergenic 40.0%
! GGAATGATGGAAGGAAACAC+TGG - chr1_4:52553737-52553756 Msa0169340:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG - chr1_4:52553741-52553760 Msa0169340:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG - chr1_4:52553780-52553799 Msa0169340:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG + chr1_4:52553800-52553819 None:intergenic 45.0%
TATGTCAAGCTGCATGGTGA+AGG - chr1_4:52553833-52553852 Msa0169340:CDS 45.0%
! CCTTCTTAAGGTCTGGTCTT+AGG + chr1_4:52554181-52554200 None:intergenic 45.0%
CCTAAGACCAGACCTTAAGA+AGG - chr1_4:52554178-52554197 Msa0169340:CDS 45.0%
ATCTGACCCTTCTTAAGGTC+TGG + chr1_4:52554188-52554207 None:intergenic 45.0%
ACAATTGCAAGAAGCTTGCC+GGG - chr1_4:52554403-52554422 Msa0169340:CDS 45.0%
! AGCACTATCAGAGGGGTTTT+TGG + chr1_4:52554482-52554501 None:intergenic 45.0%
! CCTTTTCAGCACTATCAGAG+GGG + chr1_4:52554489-52554508 None:intergenic 45.0%
! GCCTTTTCAGCACTATCAGA+GGG + chr1_4:52554490-52554509 None:intergenic 45.0%
!! GTGGGATGAACTTTGGAACT+TGG - chr1_4:52554798-52554817 Msa0169340:CDS 45.0%
TGGAACTTGGATGATGCTCT+TGG - chr1_4:52554811-52554830 Msa0169340:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG + chr1_4:52554868-52554887 None:intergenic 45.0%
! GGAATGATGGAAGGAAACAC+TGG - chr1_4:52553737-52553756 Msa0169340:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG - chr1_4:52553741-52553760 Msa0169340:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG - chr1_4:52553780-52553799 Msa0169340:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG + chr1_4:52553800-52553819 None:intergenic 45.0%
TATGTCAAGCTGCATGGTGA+AGG - chr1_4:52553833-52553852 Msa0169340:CDS 45.0%
! CCTTCTTAAGGTCTGGTCTT+AGG + chr1_4:52554181-52554200 None:intergenic 45.0%
CCTAAGACCAGACCTTAAGA+AGG - chr1_4:52554178-52554197 Msa0169340:CDS 45.0%
ATCTGACCCTTCTTAAGGTC+TGG + chr1_4:52554188-52554207 None:intergenic 45.0%
ACAATTGCAAGAAGCTTGCC+GGG - chr1_4:52554403-52554422 Msa0169340:CDS 45.0%
! AGCACTATCAGAGGGGTTTT+TGG + chr1_4:52554482-52554501 None:intergenic 45.0%
! CCTTTTCAGCACTATCAGAG+GGG + chr1_4:52554489-52554508 None:intergenic 45.0%
! GCCTTTTCAGCACTATCAGA+GGG + chr1_4:52554490-52554509 None:intergenic 45.0%
!! GTGGGATGAACTTTGGAACT+TGG - chr1_4:52554798-52554817 Msa0169340:CDS 45.0%
TGGAACTTGGATGATGCTCT+TGG - chr1_4:52554811-52554830 Msa0169340:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG + chr1_4:52554868-52554887 None:intergenic 45.0%
GAAAGGACCTTGGACTTCTG+AGG - chr1_4:52553790-52553809 Msa0169340:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG - chr1_4:52553855-52553874 Msa0169340:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG - chr1_4:52553863-52553882 Msa0169340:CDS 50.0%
TCCTAGAGCTACATGCTAGG+TGG - chr1_4:52554231-52554250 Msa0169340:intron 50.0%
CCTAGAGCTACATGCTAGGT+GGG - chr1_4:52554232-52554251 Msa0169340:intron 50.0%
CTAGAGCTACATGCTAGGTG+GGG - chr1_4:52554233-52554252 Msa0169340:intron 50.0%
TACATGCTAGGTGGGGAAAC+AGG - chr1_4:52554240-52554259 Msa0169340:intron 50.0%
! CCCCTCTGATAGTGCTGAAA+AGG - chr1_4:52554486-52554505 Msa0169340:intron 50.0%
! CGCCTTTTCAGCACTATCAG+AGG + chr1_4:52554491-52554510 None:intergenic 50.0%
GAAAGGACCTTGGACTTCTG+AGG - chr1_4:52553790-52553809 Msa0169340:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG - chr1_4:52553855-52553874 Msa0169340:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG - chr1_4:52553863-52553882 Msa0169340:CDS 50.0%
TCCTAGAGCTACATGCTAGG+TGG - chr1_4:52554231-52554250 Msa0169340:intron 50.0%
CCTAGAGCTACATGCTAGGT+GGG - chr1_4:52554232-52554251 Msa0169340:intron 50.0%
CTAGAGCTACATGCTAGGTG+GGG - chr1_4:52554233-52554252 Msa0169340:intron 50.0%
TACATGCTAGGTGGGGAAAC+AGG - chr1_4:52554240-52554259 Msa0169340:intron 50.0%
! CCCCTCTGATAGTGCTGAAA+AGG - chr1_4:52554486-52554505 Msa0169340:intron 50.0%
! CGCCTTTTCAGCACTATCAG+AGG + chr1_4:52554491-52554510 None:intergenic 50.0%
AGCTGCATGGTGAAGGCAGA+TGG - chr1_4:52553840-52553859 Msa0169340:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG + chr1_4:52554235-52554254 None:intergenic 55.0%
ACCCGTGTTGCGTTACGACA+CGG - chr1_4:52554329-52554348 Msa0169340:intron 55.0%
ACCCGTGTCGTAACGCAACA+CGG + chr1_4:52554334-52554353 None:intergenic 55.0%
AGCTGCATGGTGAAGGCAGA+TGG - chr1_4:52553840-52553859 Msa0169340:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG + chr1_4:52554235-52554254 None:intergenic 55.0%
ACCCGTGTTGCGTTACGACA+CGG - chr1_4:52554329-52554348 Msa0169340:intron 55.0%
ACCCGTGTCGTAACGCAACA+CGG + chr1_4:52554334-52554353 None:intergenic 55.0%
GTCGTAACGCAACACGGGTC+TGG + chr1_4:52554328-52554347 None:intergenic 60.0%
CCCGTGTCGTAACGCAACAC+GGG + chr1_4:52554333-52554352 None:intergenic 60.0%
CCCGTGTTGCGTTACGACAC+GGG - chr1_4:52554330-52554349 Msa0169340:intron 60.0%
GTCGTAACGCAACACGGGTC+TGG + chr1_4:52554328-52554347 None:intergenic 60.0%
CCCGTGTCGTAACGCAACAC+GGG + chr1_4:52554333-52554352 None:intergenic 60.0%
CCCGTGTTGCGTTACGACAC+GGG - chr1_4:52554330-52554349 Msa0169340:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52553728 52554903 52553728 ID=Msa0169340;Name=Msa0169340
chr1_4 mRNA 52553728 52554903 52553728 ID=Msa0169340-mRNA-1;Parent=Msa0169340;Name=Msa0169340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|264
chr1_4 exon 52554747 52554903 52554747 ID=Msa0169340-mRNA-1:exon:15595;Parent=Msa0169340-mRNA-1
chr1_4 exon 52554370 52554499 52554370 ID=Msa0169340-mRNA-1:exon:15594;Parent=Msa0169340-mRNA-1
chr1_4 exon 52553728 52554235 52553728 ID=Msa0169340-mRNA-1:exon:15593;Parent=Msa0169340-mRNA-1
chr1_4 CDS 52554747 52554903 52554747 ID=Msa0169340-mRNA-1:cds;Parent=Msa0169340-mRNA-1
chr1_4 CDS 52554370 52554499 52554370 ID=Msa0169340-mRNA-1:cds;Parent=Msa0169340-mRNA-1
chr1_4 CDS 52553728 52554235 52553728 ID=Msa0169340-mRNA-1:cds;Parent=Msa0169340-mRNA-1
Gene Sequence

>Msa0169340

ATGTATTCAGGAATGATGGAAGGAAACACTGGATGGAGTGTAATGGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTACTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGGCTGAGAAGAAATGGGAAAAGTTGTAGACTGAGATGGGTGAACTACCTAAGACCAGACCTTAAGAAGGGTCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTACATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCGGGAAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGACCAAAAACCCCTCTGATAGTGCTGAAAAGGCGAAAAATCGTTCTTTCAAGAGGCAGCAACAACAACAATTGAAGAAACAACAGCAACAAGTTCAGATGCAGCAACAACAACTGCAATACAACATGGATATGAAAGGGATCATAGACTTGTTGCTTGAGGAAAATGACTACTGTACTAGTGTGCCTTCTACTTCTCAAGAGACACAAGAAATGGTTTCCATGTATGCTGATACACAAGAACAACAGGGTTGCTTTTATTCTATGCTCAATGATAATAGTGGTAATGTCTATGCACAAGAGTCTTCAAATGAAGAGAATTTGTGGGATGAACTTTGGAACTTGGATGATGCTCTTGGAAATTCAATGCAGCTAATGCTTCAAGCAAAGCCAGCCAATGTGCACAATGTAGTTGCTCCCTTTTGTTAA
Protein sequence

>Msa0169340

MYSGMMEGNTGWSVMEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLAGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKNPSDSAEKAKNRSFKRQQQQQLKKQQQQVQMQQQQLQYNMDMKGIIDLLLEENDYCTSVPSTSQETQEMVSMYADTQEQQGCFYSMLNDNSGNVYAQESSNEENLWDELWNLDDALGNSMQLMLQAKPANVHNVVAPFC*