Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169890 | AES61869.1 | 59.146 | 164 | 29 | 1 | 1 | 164 | 1 | 126 | 1.30e-53 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169890 | G7I2W4 | 59.146 | 164 | 29 | 1 | 1 | 164 | 1 | 126 | 6.23e-54 | 177 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0169890 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169890 | MtrunA17_Chr5g0399781 | 52.830 | 53 | 24 | 1 | 4 | 56 | 13 | 64 | 4.10e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGTGGTTTACATTTCA+AGG | 0.339580 | 1_4:-53397915 | Msa0169890:CDS |
| ATTGGTGTCGGCATCTCTAT+TGG | 0.346524 | 1_4:+53396946 | None:intergenic |
| ATTGGTGTCGGCGTCTCTAT+TGG | 0.349108 | 1_4:+53396928 | None:intergenic |
| CCACAAGCGTTACACAATAT+TGG | 0.380139 | 1_4:+53397929 | None:intergenic |
| TTTCAACAGAAACTCAAGTT+TGG | 0.389578 | 1_4:-53397973 | Msa0169890:CDS |
| AATCTTTCAAACCAAACTTC+AGG | 0.411413 | 1_4:-53397800 | Msa0169890:intron |
| CCAAGCAATGAGATAGGTCT+TGG | 0.425187 | 1_4:-53396799 | Msa0169890:CDS |
| CACAATATTGGCGTCTCGTA+TGG | 0.440494 | 1_4:+53397941 | None:intergenic |
| TCAAACAACAAAATATCGTC+AGG | 0.502407 | 1_4:+53396841 | Msa0169880:intron |
| TCTTGGATGCATTCGTCTAA+AGG | 0.502885 | 1_4:-53396782 | Msa0169890:CDS |
| TTTATACCAAGCAATGAGAT+AGG | 0.511374 | 1_4:-53396805 | Msa0169890:CDS |
| CCAATATTGTGTAACGCTTG+TGG | 0.532300 | 1_4:-53397929 | Msa0169890:CDS |
| GAAACTCAAGTTTGGCGCAA+AGG | 0.544030 | 1_4:-53397965 | Msa0169890:CDS |
| CCAAGACCTATCTCATTGCT+TGG | 0.545705 | 1_4:+53396799 | Msa0169880:intron |
| GGTTTACATTTCAAGGCGAA+AGG | 0.567422 | 1_4:-53397908 | Msa0169890:CDS |
| AATAGAGACGCCGACACCAA+TGG | 0.575440 | 1_4:-53396926 | Msa0169890:CDS |
| GTCGGCGTCTCTATTGGTGT+CGG | 0.578211 | 1_4:+53396934 | None:intergenic |
| TCTTCGGGAGATAGTTAGCA+AGG | 0.579240 | 1_4:+53397882 | None:intergenic |
| AAAAGCGTTCATTTGTAGAG+AGG | 0.581892 | 1_4:-53396993 | Msa0169890:CDS |
| GGAAACTCATCCATTGGTGT+CGG | 0.599667 | 1_4:+53396916 | None:intergenic |
| AGCCCTGCAAAATCAGTCAT+CGG | 0.602139 | 1_4:-53397858 | Msa0169890:CDS |
| GATACTTCTACAGATCAAGA+TGG | 0.615323 | 1_4:-53396754 | Msa0169890:CDS |
| CTTCGGGAGATAGTTAGCAA+GGG | 0.642252 | 1_4:+53397883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATGATATAAATTGAA+GGG | + | chr1_4:53397028-53397047 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | + | chr1_4:53397029-53397048 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | - | chr1_4:53397213-53397232 | Msa0169890:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | - | chr1_4:53397214-53397233 | Msa0169890:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | - | chr1_4:53397215-53397234 | Msa0169890:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | + | chr1_4:53397402-53397421 | None:intergenic | 15.0% |
| !! | AATAGATGATATAAATTGAA+GGG | + | chr1_4:53397028-53397047 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | + | chr1_4:53397029-53397048 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | - | chr1_4:53397213-53397232 | Msa0169890:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | - | chr1_4:53397214-53397233 | Msa0169890:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | - | chr1_4:53397215-53397234 | Msa0169890:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | + | chr1_4:53397402-53397421 | None:intergenic | 15.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | + | chr1_4:53396941-53396960 | None:intergenic | 20.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | + | chr1_4:53396941-53396960 | None:intergenic | 20.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | + | chr1_4:53396987-53397006 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | + | chr1_4:53396988-53397007 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | + | chr1_4:53396999-53397018 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | - | chr1_4:53397132-53397151 | Msa0169890:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | - | chr1_4:53397133-53397152 | Msa0169890:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | - | chr1_4:53397246-53397265 | Msa0169890:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | + | chr1_4:53397496-53397515 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | - | chr1_4:53397692-53397711 | Msa0169890:intron | 25.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | + | chr1_4:53396987-53397006 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | + | chr1_4:53396988-53397007 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | + | chr1_4:53396999-53397018 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | - | chr1_4:53397132-53397151 | Msa0169890:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | - | chr1_4:53397133-53397152 | Msa0169890:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | - | chr1_4:53397246-53397265 | Msa0169890:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | + | chr1_4:53397496-53397515 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | - | chr1_4:53397692-53397711 | Msa0169890:intron | 25.0% |
| TTTCAACAGAAACTCAAGTT+TGG | - | chr1_4:53396754-53396773 | Msa0169890:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | + | chr1_4:53396896-53396915 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | - | chr1_4:53396927-53396946 | Msa0169890:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | + | chr1_4:53396989-53397008 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | - | chr1_4:53397045-53397064 | Msa0169890:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | - | chr1_4:53397046-53397065 | Msa0169890:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | - | chr1_4:53397160-53397179 | Msa0169890:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | - | chr1_4:53397227-53397246 | Msa0169890:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | - | chr1_4:53397228-53397247 | Msa0169890:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | - | chr1_4:53397245-53397264 | Msa0169890:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | - | chr1_4:53397247-53397266 | Msa0169890:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | - | chr1_4:53397415-53397434 | Msa0169890:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | - | chr1_4:53397483-53397502 | Msa0169890:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | - | chr1_4:53397524-53397543 | Msa0169890:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | + | chr1_4:53397575-53397594 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | - | chr1_4:53397583-53397602 | Msa0169890:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | - | chr1_4:53397670-53397689 | Msa0169890:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | + | chr1_4:53397730-53397749 | None:intergenic | 30.0% |
| ! | TATAGACTAAGAAGCTTTTG+TGG | + | chr1_4:53397835-53397854 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | + | chr1_4:53397889-53397908 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | - | chr1_4:53397922-53397941 | Msa0169890:CDS | 30.0% | |
| TTTCAACAGAAACTCAAGTT+TGG | - | chr1_4:53396754-53396773 | Msa0169890:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | + | chr1_4:53396896-53396915 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | - | chr1_4:53396927-53396946 | Msa0169890:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | + | chr1_4:53396989-53397008 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | - | chr1_4:53397045-53397064 | Msa0169890:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | - | chr1_4:53397046-53397065 | Msa0169890:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | - | chr1_4:53397160-53397179 | Msa0169890:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | - | chr1_4:53397227-53397246 | Msa0169890:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | - | chr1_4:53397228-53397247 | Msa0169890:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | - | chr1_4:53397245-53397264 | Msa0169890:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | - | chr1_4:53397247-53397266 | Msa0169890:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | - | chr1_4:53397415-53397434 | Msa0169890:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | - | chr1_4:53397483-53397502 | Msa0169890:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | - | chr1_4:53397524-53397543 | Msa0169890:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | + | chr1_4:53397575-53397594 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | - | chr1_4:53397583-53397602 | Msa0169890:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | - | chr1_4:53397670-53397689 | Msa0169890:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | + | chr1_4:53397730-53397749 | None:intergenic | 30.0% |
| ! | TATAGACTAAGAAGCTTTTG+TGG | + | chr1_4:53397835-53397854 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | + | chr1_4:53397889-53397908 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | - | chr1_4:53397922-53397941 | Msa0169890:CDS | 30.0% | |
| TAAAACCCATGCACTAGAAA+AGG | + | chr1_4:53397054-53397073 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | - | chr1_4:53397159-53397178 | Msa0169890:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | - | chr1_4:53397365-53397384 | Msa0169890:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | - | chr1_4:53397673-53397692 | Msa0169890:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | - | chr1_4:53397674-53397693 | Msa0169890:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | + | chr1_4:53397681-53397700 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | - | chr1_4:53397734-53397753 | Msa0169890:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | + | chr1_4:53397820-53397839 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | - | chr1_4:53397973-53397992 | Msa0169890:CDS | 35.0% | |
| TAAAACCCATGCACTAGAAA+AGG | + | chr1_4:53397054-53397073 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | - | chr1_4:53397159-53397178 | Msa0169890:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | - | chr1_4:53397365-53397384 | Msa0169890:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | - | chr1_4:53397673-53397692 | Msa0169890:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | - | chr1_4:53397674-53397693 | Msa0169890:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | + | chr1_4:53397681-53397700 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | - | chr1_4:53397734-53397753 | Msa0169890:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | + | chr1_4:53397820-53397839 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | - | chr1_4:53397973-53397992 | Msa0169890:CDS | 35.0% | |
| CCACAAGCGTTACACAATAT+TGG | + | chr1_4:53396801-53396820 | Msa0169880:intron | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | - | chr1_4:53396798-53396817 | Msa0169890:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | - | chr1_4:53396812-53396831 | Msa0169890:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | - | chr1_4:53396819-53396838 | Msa0169890:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | - | chr1_4:53397060-53397079 | Msa0169890:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | - | chr1_4:53397164-53397183 | Msa0169890:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_4:53397292-53397311 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_4:53397293-53397312 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | - | chr1_4:53397364-53397383 | Msa0169890:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | - | chr1_4:53397374-53397393 | Msa0169890:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | - | chr1_4:53397375-53397394 | Msa0169890:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | - | chr1_4:53397945-53397964 | Msa0169890:CDS | 40.0% | |
| CCACAAGCGTTACACAATAT+TGG | + | chr1_4:53396801-53396820 | Msa0169880:intron | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | - | chr1_4:53396798-53396817 | Msa0169890:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | - | chr1_4:53396812-53396831 | Msa0169890:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | - | chr1_4:53396819-53396838 | Msa0169890:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | - | chr1_4:53397060-53397079 | Msa0169890:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | - | chr1_4:53397164-53397183 | Msa0169890:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_4:53397292-53397311 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_4:53397293-53397312 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | - | chr1_4:53397364-53397383 | Msa0169890:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | - | chr1_4:53397374-53397393 | Msa0169890:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | - | chr1_4:53397375-53397394 | Msa0169890:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | - | chr1_4:53397945-53397964 | Msa0169890:CDS | 40.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | - | chr1_4:53396762-53396781 | Msa0169890:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | + | chr1_4:53396789-53396808 | Msa0169880:intron | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | + | chr1_4:53396847-53396866 | Msa0169880:intron | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | + | chr1_4:53396848-53396867 | Msa0169880:intron | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | + | chr1_4:53396864-53396883 | Msa0169880:intron | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | - | chr1_4:53396869-53396888 | Msa0169890:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | + | chr1_4:53396874-53396893 | Msa0169880:intron | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | + | chr1_4:53397291-53397310 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | - | chr1_4:53397356-53397375 | Msa0169890:intron | 45.0% | |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | + | chr1_4:53397784-53397803 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | + | chr1_4:53397814-53397833 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | + | chr1_4:53397931-53397950 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | - | chr1_4:53397928-53397947 | Msa0169890:CDS | 45.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | - | chr1_4:53396762-53396781 | Msa0169890:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | + | chr1_4:53396789-53396808 | Msa0169880:intron | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | + | chr1_4:53396847-53396866 | Msa0169880:intron | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | + | chr1_4:53396848-53396867 | Msa0169880:intron | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | + | chr1_4:53396864-53396883 | Msa0169880:intron | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | - | chr1_4:53396869-53396888 | Msa0169890:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | + | chr1_4:53396874-53396893 | Msa0169880:intron | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | + | chr1_4:53397291-53397310 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | - | chr1_4:53397356-53397375 | Msa0169890:intron | 45.0% | |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | + | chr1_4:53397784-53397803 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | + | chr1_4:53397814-53397833 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | + | chr1_4:53397931-53397950 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | - | chr1_4:53397928-53397947 | Msa0169890:CDS | 45.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | + | chr1_4:53396863-53396882 | Msa0169880:intron | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | + | chr1_4:53396875-53396894 | Msa0169880:intron | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | + | chr1_4:53397802-53397821 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | - | chr1_4:53397801-53397820 | Msa0169890:CDS | 50.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | + | chr1_4:53396863-53396882 | Msa0169880:intron | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | + | chr1_4:53396875-53396894 | Msa0169880:intron | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | + | chr1_4:53397802-53397821 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | - | chr1_4:53397801-53397820 | Msa0169890:CDS | 50.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | + | chr1_4:53397796-53397815 | None:intergenic | 55.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | + | chr1_4:53397796-53397815 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53396750 | 53397999 | 53396750 | ID=Msa0169890;Name=Msa0169890 |
| chr1_4 | mRNA | 53396750 | 53397999 | 53396750 | ID=Msa0169890-mRNA-1;Parent=Msa0169890;Name=Msa0169890-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|168 |
| chr1_4 | exon | 53397801 | 53397999 | 53397801 | ID=Msa0169890-mRNA-1:exon:15900;Parent=Msa0169890-mRNA-1 |
| chr1_4 | exon | 53396750 | 53397057 | 53396750 | ID=Msa0169890-mRNA-1:exon:15899;Parent=Msa0169890-mRNA-1 |
| chr1_4 | CDS | 53397801 | 53397999 | 53397801 | ID=Msa0169890-mRNA-1:cds;Parent=Msa0169890-mRNA-1 |
| chr1_4 | CDS | 53396750 | 53397057 | 53396750 | ID=Msa0169890-mRNA-1:cds;Parent=Msa0169890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
