AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170150 MtrunA17_Chr1g0187571 98.922 464 5 0 1 464 1 464 0.0 945
Msa0170150 MtrunA17_Chr1g0166821 86.452 465 55 3 1 464 1 458 0.0 768
Msa0170150 MtrunA17_Chr7g0261501 76.840 462 101 5 2 458 1 461 0.0 703
Msa0170150 MtrunA17_Chr1g0183631 72.451 461 114 8 2 458 1 452 0.0 671
Msa0170150 MtrunA17_Chr2g0329981 60.421 475 171 7 2 462 1 472 0.0 545
Msa0170150 MtrunA17_Chr8g0342821 59.916 479 158 9 2 458 1 467 0.0 536
Msa0170150 MtrunA17_Chr4g0071031 77.143 315 68 2 2 316 1 311 0.0 531
Msa0170150 MtrunA17_Chr1g0167261 71.545 369 73 4 1 366 1 340 0.0 524
Msa0170150 MtrunA17_Chr8g0390211 59.954 432 150 7 2 423 1 419 1.31e-179 509
Msa0170150 MtrunA17_Chr6g0486611 60.373 429 148 8 2 420 1 417 2.72e-179 508
Msa0170150 MtrunA17_Chr2g0299661 59.712 417 149 7 2 417 1 399 1.41e-173 495
Msa0170150 MtrunA17_Chr1g0146151 66.242 314 106 0 2 315 1 314 1.09e-160 461
Msa0170150 MtrunA17_Chr3g0140071 54.005 437 178 5 2 422 1 430 8.31e-160 459
Msa0170150 MtrunA17_Chr7g0214531 39.100 289 157 6 6 278 31 316 1.66e-58 202
Msa0170150 MtrunA17_Chr3g0140431 39.068 279 157 6 6 274 32 307 3.25e-56 196
Msa0170150 MtrunA17_Chr1g0146301 37.993 279 160 6 6 274 118 393 2.92e-55 195
Msa0170150 MtrunA17_Chr1g0213321 37.676 284 163 6 6 278 113 393 1.35e-54 193
Msa0170150 MtrunA17_Chr7g0253211 37.943 282 159 5 10 278 324 602 2.45e-53 192
Msa0170150 MtrunA17_Chr8g0340491 36.879 282 156 6 10 274 128 404 8.76e-50 180
Msa0170150 MtrunA17_Chr5g0405421 25.455 220 147 6 9 220 98 308 4.85e-13 71.2
Msa0170150 MtrunA17_Chr7g0245031 32.857 140 80 4 108 247 250 375 2.19e-12 68.9
Msa0170150 MtrunA17_Chr4g0072831 30.065 153 75 5 8 154 8 134 8.75e-12 66.2
Msa0170150 MtrunA17_Chr7g0267751 27.189 217 134 9 10 216 135 337 2.07e-11 66.2
Msa0170150 MtrunA17_Chr4g0075541 26.241 282 178 10 12 282 89 351 2.50e-11 65.1
Msa0170150 MtrunA17_Chr7g0267771 27.064 218 133 7 10 216 88 290 2.52e-11 65.5
Msa0170150 MtrunA17_Chr1g0203881 24.809 262 167 8 9 251 40 290 3.01e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170150 AT3G23340.1 75.862 464 89 6 2 464 1 442 0.0 713
Msa0170150 AT4G14340.1 74.249 466 101 5 2 464 7 456 0.0 710
Msa0170150 AT4G28540.1 73.950 476 102 9 2 458 5 477 0.0 687
Msa0170150 AT5G43320.1 71.933 481 116 8 2 464 1 480 0.0 686
Msa0170150 AT3G23340.2 73.276 464 87 7 2 464 1 428 0.0 679
Msa0170150 AT1G04440.1 71.338 471 124 7 2 464 1 468 0.0 664
Msa0170150 AT1G03930.1 73.093 472 109 4 2 458 1 469 0.0 657
Msa0170150 AT5G44100.1 72.479 476 110 6 2 458 1 474 0.0 628
Msa0170150 AT5G44100.2 72.479 476 110 6 2 458 1 474 0.0 628
Msa0170150 AT4G14340.2 84.404 327 50 1 2 327 7 333 0.0 597
Msa0170150 AT5G43320.2 80.655 336 54 2 2 329 1 333 0.0 567
Msa0170150 AT5G43320.3 80.655 336 54 2 2 329 1 333 0.0 567
Msa0170150 AT1G72710.1 69.474 380 106 4 2 374 1 377 0.0 544
Msa0170150 AT4G26100.1 63.158 437 146 9 2 433 1 427 0.0 532
Msa0170150 AT5G57015.1 72.619 336 87 3 2 337 1 331 0.0 521
Msa0170150 AT2G19470.1 74.839 310 75 1 2 311 1 307 0.0 517
Msa0170150 AT4G28880.3 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0170150 AT4G28880.2 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0170150 AT4G28880.1 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0170150 AT4G28880.4 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0170150 AT4G28860.2 70.717 321 89 2 2 322 1 316 6.79e-175 495
Msa0170150 AT4G28860.1 70.717 321 89 2 2 322 1 316 3.41e-174 495
Msa0170150 AT4G08800.1 64.430 298 74 2 2 299 1 266 2.86e-143 411
Msa0170150 AT2G25760.2 40.000 280 153 4 10 274 107 386 4.02e-60 209
Msa0170150 AT2G25760.1 39.643 280 151 5 10 274 107 383 2.14e-57 201
Msa0170150 AT3G13670.1 36.678 289 164 6 6 278 131 416 2.17e-54 193
Msa0170150 AT5G18190.2 37.234 282 161 5 10 278 130 408 4.54e-54 192
Msa0170150 AT5G18190.1 37.234 282 161 5 10 278 130 408 4.54e-54 192
Msa0170150 AT3G03940.1 37.234 282 161 5 10 278 140 418 4.79e-54 192
Msa0170150 AT3G06030.1 25.926 216 141 5 9 214 67 273 1.20e-12 70.5
Msa0170150 AT2G38910.1 26.667 285 156 10 2 246 119 390 3.86e-12 68.9
Msa0170150 AT3G50530.1 26.872 227 143 7 6 220 144 359 4.05e-12 68.9
Msa0170150 AT1G09000.1 25.581 215 141 4 10 214 69 274 3.69e-11 65.9
Msa0170150 AT5G39440.1 27.354 223 147 6 10 228 19 230 3.77e-11 65.5
Msa0170150 AT2G17890.1 23.423 222 149 7 9 220 107 317 4.26e-11 65.5
Msa0170150 AT1G09000.2 25.581 215 141 4 10 214 69 274 8.40e-11 64.7
Msa0170150 AT1G30270.1 28.049 246 139 12 8 237 29 252 8.74e-11 64.3

Find 182 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGATTGGTGTTGGGTTT+TGG 0.197653 1_4:-53983151 None:intergenic
TCATTTAATAATCGTGCTTC+TGG 0.214021 1_4:+53989307 Msa0170150:CDS
GACTCCTCTTATATCTCTTT+TGG 0.225564 1_4:+53989565 Msa0170150:three_prime_UTR
CTGGGAAAATTTCGGGATTC+CGG 0.230740 1_4:-53983097 None:intergenic
AAAATTGCTATGTAAGTTTC+TGG 0.243029 1_4:+53989735 Msa0170150:three_prime_UTR
TGTCACTTGGCACTGGAAAA+AGG 0.247125 1_4:+53989374 Msa0170150:CDS
TTTGAAATTTAGCTTGAATT+AGG 0.260045 1_4:+53983589 Msa0170150:five_prime_UTR
TTTAGAAATTTGTTAATATA+TGG 0.266874 1_4:+53989646 Msa0170150:three_prime_UTR
CGGGTATTCCCCATTTAAAA+TGG 0.292102 1_4:+53985041 Msa0170150:CDS
GCTTGATAAGACAGGTCTTT+TGG 0.292884 1_4:-53989167 None:intergenic
TTTCTCTCTGTTCTGTTTGT+GGG 0.298944 1_4:+53983408 Msa0170150:five_prime_UTR
ATTATTAAATGATGATGATT+TGG 0.313853 1_4:-53989296 None:intergenic
TTCAAGCTCGGAAGGAAAAT+TGG 0.317743 1_4:+53983654 Msa0170150:CDS
TTGAGTCGATGAAGTGGAAT+TGG 0.320093 1_4:-53983211 None:intergenic
GTGATGATGGATCATGTAAT+TGG 0.322381 1_4:+53983624 Msa0170150:exon
CTTGGTTCACCAGAAGAGTT+TGG 0.328063 1_4:-53989196 None:intergenic
TGAGTCGATGAAGTGGAATT+GGG 0.330154 1_4:-53983210 None:intergenic
CACAAATTGGATCTAGTTCC+AGG 0.331261 1_4:+53988417 Msa0170150:CDS
TGGGAAAATTTCGGGATTCC+GGG 0.335282 1_4:-53983096 None:intergenic
AAAATTGGTGGTGGGTCATT+TGG 0.338722 1_4:+53983669 Msa0170150:CDS
AGCAGCCGTCCAAACTCTTC+TGG 0.341980 1_4:+53989187 Msa0170150:CDS
TAAGATTGTGCTGGAAATAT+AGG 0.343670 1_4:+53983512 Msa0170150:five_prime_UTR
AGAGGAAGTTGCTCTTAAAT+TGG 0.345528 1_4:+53983829 Msa0170150:CDS
TTTAACCTTCTCGGATGAAT+AGG 0.346286 1_4:-53988281 None:intergenic
TCATAAAGAAATTCCTTGAA+TGG 0.354599 1_4:-53989529 None:intergenic
TAGATTCTCGGGTGCAGTTC+AGG 0.359219 1_4:+53988904 Msa0170150:CDS
ATTCCCCATTTAAAATGGTT+TGG 0.360672 1_4:+53985046 Msa0170150:CDS
GAATTCAAATTTAACCTTCT+CGG 0.361148 1_4:-53988290 None:intergenic
ATATTGAAGTATCCACAAAT+TGG 0.362130 1_4:+53988404 Msa0170150:CDS
AATAGTGTGGAAAGAGGATA+TGG 0.362313 1_4:-53983169 None:intergenic
CATTTAATAATCGTGCTTCT+GGG 0.365719 1_4:+53989308 Msa0170150:CDS
GAGAGAGTAGAACGGCCTTC+AGG 0.366937 1_4:+53988599 Msa0170150:CDS
ACTTGTTTAACTATTGCAAT+AGG 0.374193 1_4:+53985125 Msa0170150:CDS
TTCAGGTGGACCAGAGATTC+GGG 0.376581 1_4:+53988880 Msa0170150:intron
TGACCTCCTTGGACCAAGTC+TGG 0.378575 1_4:+53985099 Msa0170150:CDS
TTTCAGGTGGACCAGAGATT+CGG 0.384714 1_4:+53988879 Msa0170150:intron
TTTAGCTTGAATTAGGAGAT+TGG 0.391245 1_4:+53983596 Msa0170150:five_prime_UTR
GCGGGTTATAATACCTCTAT+AGG 0.393119 1_4:-53988024 None:intergenic
TATGTTCTAGTGTACATTCA+TGG 0.401338 1_4:+53989790 Msa0170150:three_prime_UTR
GTCATAAATCCAGGACAATC+AGG 0.401717 1_4:+53988575 Msa0170150:CDS
ACTCTCTCTCCTGATTGTCC+TGG 0.401749 1_4:-53988584 None:intergenic
GTACATTCATGGAATGGAAT+TGG 0.404103 1_4:+53989801 Msa0170150:three_prime_UTR
AGTTTGATTATGTGTTTGAT+TGG 0.406009 1_4:+53988378 Msa0170150:CDS
TGGAATGGAATTGGCGAGTA+AGG 0.413433 1_4:+53989810 Msa0170150:three_prime_UTR
AGAGGATATGGATTGGTGTT+GGG 0.415851 1_4:-53983157 None:intergenic
ACAAAGCAGAAGAGATGATC+TGG 0.417037 1_4:+53987807 Msa0170150:CDS
AAATTGTACATGCTTCTTCA+AGG 0.419496 1_4:+53984857 Msa0170150:CDS
GGAATTGGCGAGTAAGGATT+GGG 0.419680 1_4:+53989816 Msa0170150:three_prime_UTR
ATTTCTTTATGAAGAAGCTT+TGG 0.421445 1_4:+53989540 Msa0170150:three_prime_UTR
TTTAGGACGCAAAGCAAATC+AGG 0.425650 1_4:+53985349 Msa0170150:CDS
TTTATGACTGGTTTCCCACT+TGG 0.426175 1_4:-53988560 None:intergenic
AAAATAGGTAAAATATGAAA+AGG 0.427523 1_4:-53983257 None:intergenic
TTTAAAATGGTTTGGAGTTG+AGG 0.433665 1_4:+53985054 Msa0170150:CDS
GTCATTTGGAGAGCTCTACT+TGG 0.434739 1_4:+53983683 Msa0170150:CDS
TTAGCTTGAATTAGGAGATT+GGG 0.435311 1_4:+53983597 Msa0170150:five_prime_UTR
CATCCATGCTGAAATATTCA+TGG 0.435352 1_4:-53989595 None:intergenic
ACAAATTGATGATTTGTTCA+AGG 0.437148 1_4:-53989858 None:intergenic
GATTGTCCTGGATTTATGAC+TGG 0.439156 1_4:-53988572 None:intergenic
TTAAAATGGTTTGGAGTTGA+GGG 0.440355 1_4:+53985055 Msa0170150:CDS
GTAGTGAAGTTGAGGATGTT+TGG 0.441312 1_4:-53984828 None:intergenic
CGGCTAGAGCGGCTTTCACT+TGG 0.441375 1_4:-53989214 None:intergenic
GTGTGCATGGTGATCATTCC+AGG 0.443890 1_4:+53988957 Msa0170150:CDS
AACTGTTTCCCAGTCTCCCT+TGG 0.448040 1_4:+53987935 Msa0170150:intron
GCAAGTGTTAATACTCATCT+AGG 0.449215 1_4:+53987672 Msa0170150:CDS
CAGGTATACATAATTGATTA+CGG 0.449576 1_4:+53987008 Msa0170150:intron
ACATGTTGTCTCTTCGTGAA+TGG 0.449603 1_4:-53989621 None:intergenic
ACCGCAACGATCGGCAGTAA+TGG 0.450799 1_4:-53988212 None:intergenic
TCAGGTGTTAATGTACAAAC+TGG 0.455615 1_4:+53983806 Msa0170150:intron
TGGAATTGGCGAGTAAGGAT+TGG 0.457588 1_4:+53989815 Msa0170150:three_prime_UTR
TCCAATGTTGGGTCCATTCA+AGG 0.462914 1_4:+53989516 Msa0170150:three_prime_UTR
TAAAGTACTCACCCGGGCCC+TGG 0.463637 1_4:-53988435 None:intergenic
TGCTACTGCTCAAGAGCAAT+CGG 0.463680 1_4:-53989234 None:intergenic
CATGTTGTCTCTTCGTGAAT+GGG 0.465371 1_4:-53989620 None:intergenic
TGAGGATGTTTGGTCTTCAC+AGG 0.466320 1_4:-53984818 None:intergenic
CATGAATATTTCAGCATGGA+TGG 0.469973 1_4:+53989596 Msa0170150:three_prime_UTR
AGAGATTCGGGATAGATTCT+CGG 0.471393 1_4:+53988892 Msa0170150:CDS
AATTTCGGGATTCCGGGAAA+AGG 0.474919 1_4:-53983090 None:intergenic
GAGAATCTATCCCGAATCTC+TGG 0.479581 1_4:-53988890 None:intergenic
AACACCAAAAGAGATATAAG+AGG 0.479596 1_4:-53989569 None:intergenic
TTAAACAAGTCTTCCAGACT+TGG 0.485095 1_4:-53985112 None:intergenic
GAACTCCTGTCACTTGGCAC+TGG 0.485260 1_4:+53989367 Msa0170150:CDS
TTGGATCTAGTTCCAGGGCC+CGG 0.486826 1_4:+53988423 Msa0170150:CDS
CCTTGGCAAGGTTTGAAAGC+TGG 0.488040 1_4:+53987952 Msa0170150:CDS
CAGGCATTTGCAAGAAGGAA+TGG 0.490425 1_4:+53988923 Msa0170150:CDS
AAGAGGATATGGATTGGTGT+TGG 0.492124 1_4:-53983158 None:intergenic
TGGATCTAGTTCCAGGGCCC+GGG 0.493698 1_4:+53988424 Msa0170150:CDS
AGCTTTGAACTCCTGTCACT+TGG 0.494711 1_4:+53989361 Msa0170150:CDS
CTCTTGAGATACGAATAATC+AGG 0.495706 1_4:-53988246 None:intergenic
CAGTTCAGGCATTTGCAAGA+AGG 0.496735 1_4:+53988918 Msa0170150:CDS
TTTCCCAGTCTCCCTTGGCA+AGG 0.501011 1_4:+53987940 Msa0170150:intron
GAAGATGCTTACTCCTATAG+AGG 0.503426 1_4:+53988011 Msa0170150:CDS
GAGTATTAACACTTGCATAC+CGG 0.504831 1_4:-53987665 None:intergenic
GAGATTCGGGATAGATTCTC+GGG 0.507677 1_4:+53988893 Msa0170150:CDS
AAAAGTTGTGATGTGAAGTC+AGG 0.509486 1_4:-53983018 None:intergenic
CTGGAACTAGATCCAATTTG+TGG 0.509685 1_4:-53988416 None:intergenic
AAATAGGTAAAATATGAAAA+GGG 0.510670 1_4:-53983256 None:intergenic
CTCATCTGAAGATCTATGCC+TGG 0.513835 1_4:-53988975 None:intergenic
TGGATCTGTCTTTGAGGACA+AGG 0.515041 1_4:-53983131 None:intergenic
AATTGTACATGCTTCTTCAA+GGG 0.515160 1_4:+53984858 Msa0170150:CDS
TTTGCAAGAAGGAATGGATC+TGG 0.516230 1_4:+53988929 Msa0170150:CDS
AAACAAACATGGTACCTGTA+TGG 0.519200 1_4:-53987074 None:intergenic
CTAACCACGTCTTTAGAAGA+TGG 0.525542 1_4:-53988998 None:intergenic
TTAAATTTGAGTCGATGAAG+TGG 0.529967 1_4:-53983217 None:intergenic
TTTGACTCGTAGTGAAGTTG+AGG 0.532224 1_4:-53984836 None:intergenic
CCAGCTTTCAAACCTTGCCA+AGG 0.533106 1_4:-53987952 None:intergenic
TCCTTGAATGGACCCAACAT+TGG 0.534362 1_4:-53989517 None:intergenic
GTTAATACTCATCTAGGAGT+TGG 0.534550 1_4:+53987678 Msa0170150:CDS
AGTATTAACACTTGCATACC+GGG 0.534714 1_4:-53987664 None:intergenic
GGGAAACCAGTCATAAATCC+AGG 0.534889 1_4:+53988566 Msa0170150:CDS
TCCATTACTGCCGATCGTTG+CGG 0.536213 1_4:+53988211 Msa0170150:CDS
TGAATGGACCCAACATTGGA+TGG 0.539367 1_4:-53989513 None:intergenic
TCATTTGGAGAGCTCTACTT+GGG 0.539914 1_4:+53983684 Msa0170150:CDS
GGACGGCTGCTTGATAAGAC+AGG 0.541596 1_4:-53989175 None:intergenic
CACACAAGCATATACCATAC+AGG 0.541677 1_4:+53987060 Msa0170150:CDS
CTCGGAAGGAAAATTGGTGG+TGG 0.543152 1_4:+53983660 Msa0170150:CDS
CAGCTTTCAAACCTTGCCAA+GGG 0.543251 1_4:-53987951 None:intergenic
TATCTTCAAACCGCAACGAT+CGG 0.543597 1_4:-53988221 None:intergenic
CGTGACCTATTCATCCGAGA+AGG 0.545158 1_4:+53988276 Msa0170150:CDS
TTTGTGCAAGGCACATCCGT+TGG 0.545816 1_4:+53988173 Msa0170150:CDS
GGCTGCTTGTAATAATTACA+TGG 0.548094 1_4:+53989667 Msa0170150:three_prime_UTR
GATTTGTTCAAGGAGAAGAT+TGG 0.550673 1_4:-53989848 None:intergenic
GCCATGGCAATTGACCTCCT+TGG 0.551055 1_4:+53985088 Msa0170150:CDS
CTTGAGTCAAGCAAGGGTCA+TGG 0.555144 1_4:+53989429 Msa0170150:three_prime_UTR
AGTTGTCAGGCTTTATATCA+CGG 0.558010 1_4:-53985316 None:intergenic
ATTGTACATGCTTCTTCAAG+GGG 0.562314 1_4:+53984859 Msa0170150:CDS
CCGGGAAAAGGAAAGAAAAG+TGG 0.562774 1_4:-53983078 None:intergenic
AAAACCTCACTGGAACTGCC+CGG 0.564841 1_4:+53987646 Msa0170150:CDS
TCTAGTGTACATTCATGGAA+TGG 0.565103 1_4:+53989795 Msa0170150:three_prime_UTR
ATAGTGAATAGTGTGGAAAG+AGG 0.572143 1_4:-53983175 None:intergenic
CAGGTGGGATAGATGAGATG+TGG 0.573028 1_4:-53982999 None:intergenic
GGATCTGGCCATGGTGTGCA+TGG 0.573110 1_4:+53988944 Msa0170150:CDS
CGTGCTTCTGGGGCAAGAGG+TGG 0.573464 1_4:+53989319 Msa0170150:CDS
GTGGAAAATTCAAGCTCGGA+AGG 0.575556 1_4:+53983646 Msa0170150:CDS
GAGTCGATGAAGTGGAATTG+GGG 0.577689 1_4:-53983209 None:intergenic
AATTGATGTGTGTAGTAGAG+TGG 0.579591 1_4:+53983565 Msa0170150:five_prime_UTR
ATTGGTGGAAAATTCAAGCT+CGG 0.586349 1_4:+53983642 Msa0170150:CDS
AGAGATGATCTGGAATCACT+TGG 0.587254 1_4:+53987817 Msa0170150:CDS
CTTCCATGAATATTTCAGCA+TGG 0.593378 1_4:+53989592 Msa0170150:three_prime_UTR
AATCGTGCTTCTGGGGCAAG+AGG 0.593465 1_4:+53989316 Msa0170150:CDS
GTTCACCAGAAGAGTTTGGA+CGG 0.595743 1_4:-53989192 None:intergenic
ATTTAATAATCGTGCTTCTG+GGG 0.598016 1_4:+53989309 Msa0170150:CDS
AGTTGTGATGTGAAGTCAGG+TGG 0.598192 1_4:-53983015 None:intergenic
TCCAAGGAGGTCAATTGCCA+TGG 0.600545 1_4:-53985089 None:intergenic
CAGGCTTTATATCACGGTGA+AGG 0.608260 1_4:-53985310 None:intergenic
AATTAAGATAGTGAATAGTG+TGG 0.609487 1_4:-53983182 None:intergenic
CAGACTTCTTGAGTCAAGCA+AGG 0.611739 1_4:+53989422 Msa0170150:three_prime_UTR
GCTTGTGTGTGTGAAGATCT+CGG 0.612004 1_4:-53987046 None:intergenic
AAGTATGATGTAAATTCCAA+CGG 0.613345 1_4:-53988189 None:intergenic
GTTGTGATGTGAAGTCAGGT+GGG 0.617901 1_4:-53983014 None:intergenic
AGTCTTCCAGACTTGGTCCA+AGG 0.617923 1_4:-53985105 None:intergenic
TACACTAGAACATAGTACTC+AGG 0.619256 1_4:-53989781 None:intergenic
ACAAATTGGATCTAGTTCCA+GGG 0.625877 1_4:+53988418 Msa0170150:CDS
GTTGAGTACATGCACTCCCG+TGG 0.629864 1_4:+53985284 Msa0170150:CDS
ATGATGGATCATGTAATTGG+TGG 0.630712 1_4:+53983627 Msa0170150:CDS
AAGCTCGGAAGGAAAATTGG+TGG 0.634557 1_4:+53983657 Msa0170150:CDS
TGTGGAAAGAGGATATGGAT+TGG 0.636850 1_4:-53983164 None:intergenic
TCGGAAGGAAAATTGGTGGT+GGG 0.637716 1_4:+53983661 Msa0170150:CDS
AGACTTCTTGAGTCAAGCAA+GGG 0.639265 1_4:+53989423 Msa0170150:three_prime_UTR
AGAAGGAATGGATCTGGCCA+TGG 0.643782 1_4:+53988935 Msa0170150:CDS
TGAGGGTGACTACAATGCCA+TGG 0.644969 1_4:+53985072 Msa0170150:CDS
GGTACAAAATATGCATCACA+AGG 0.646634 1_4:-53989760 None:intergenic
TGTTAATGTACAAACTGGAG+AGG 0.648733 1_4:+53983811 Msa0170150:CDS
ACTACTCAGAGGACTCAACC+AGG 0.650293 1_4:+53989265 Msa0170150:CDS
AATATACAGAGCAATCAACA+AGG 0.652324 1_4:-53989488 None:intergenic
CCGCGTAGCTCTTCTCGTCA+CGG 0.653072 1_4:+53989136 Msa0170150:CDS
TGTAGCAAGCTGATTCTGAG+AGG 0.654308 1_4:+53989113 Msa0170150:intron
AATGATCACCATGCACACCA+TGG 0.661002 1_4:-53988952 None:intergenic
GATGATTTGGACTCAAGACC+TGG 0.661178 1_4:-53989283 None:intergenic
ATCACGGTGAAGGAAACCAC+GGG 0.662401 1_4:-53985300 None:intergenic
TCAAGAGCAATCGGCTAGAG+CGG 0.663121 1_4:-53989225 None:intergenic
AATCAGGAGAGAGAGTAGAA+CGG 0.663172 1_4:+53988591 Msa0170150:CDS
CATACCGGGCAGTTCCAGTG+AGG 0.669824 1_4:-53987650 None:intergenic
TATCACGGTGAAGGAAACCA+CGG 0.680680 1_4:-53985301 None:intergenic
CTTCCAGACTTGGTCCAAGG+AGG 0.681469 1_4:-53985102 None:intergenic
TTGTACATGCTTCTTCAAGG+GGG 0.696070 1_4:+53984860 Msa0170150:CDS
GTGGTCGTGATGATACACTC+AGG 0.697269 1_4:+53989338 Msa0170150:CDS
GAATTGGCGAGTAAGGATTG+GGG 0.697779 1_4:+53989817 Msa0170150:three_prime_UTR
TGAGCCATCTTCTAAAGACG+TGG 0.710607 1_4:+53988994 Msa0170150:CDS
ATATACAGAGCAATCAACAA+GGG 0.716709 1_4:-53989487 None:intergenic
GCAGACTATCTACTACTCAG+AGG 0.717657 1_4:+53989254 Msa0170150:CDS
GTACAAAATATGCATCACAA+GGG 0.738084 1_4:-53989759 None:intergenic
CCGTGACGAGAAGAGCTACG+CGG 0.803013 1_4:-53989136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAATAAACATTAATTT+GGG - chr1_4:53986188-53986207 None:intergenic 10.0%
!! AAACTAAATAAACATTAATT+TGG - chr1_4:53986189-53986208 None:intergenic 10.0%
!! TTAAATATTTAAGAAAATAC+AGG - chr1_4:53986684-53986703 None:intergenic 10.0%
!!! CTTTTTTTATTTTAATAACT+CGG + chr1_4:53987910-53987929 Msa0170150:intron 10.0%
!!! TTTTTTTATTTTAATAACTC+GGG + chr1_4:53987911-53987930 Msa0170150:intron 10.0%
!!! TTTAGAAATTTGTTAATATA+TGG + chr1_4:53989646-53989665 Msa0170150:three_prime_UTR 10.0%
!! AAATAGGTAAAATATGAAAA+GGG - chr1_4:53983259-53983278 None:intergenic 15.0%
!! AAAATAGGTAAAATATGAAA+AGG - chr1_4:53983260-53983279 None:intergenic 15.0%
!!! ATAGATGGTTTTTTTTTTTT+TGG + chr1_4:53983910-53983929 Msa0170150:intron 15.0%
!!! TAAAAATTCCTTTCTTTTAA+AGG - chr1_4:53984214-53984233 None:intergenic 15.0%
!!! TTAAAAGAAAGGAATTTTTA+AGG + chr1_4:53984214-53984233 Msa0170150:intron 15.0%
!!! TACAGCATTTTTTTTTTTTT+TGG - chr1_4:53985625-53985644 None:intergenic 15.0%
!!! TAAATTTCATTCTTTAGTTT+AGG - chr1_4:53985784-53985803 None:intergenic 15.0%
!!! TATTATTTAGTTTTGATAGT+TGG + chr1_4:53986432-53986451 Msa0170150:intron 15.0%
!!! AAATTTTATAAGGATGTAAA+TGG + chr1_4:53987387-53987406 Msa0170150:intron 15.0%
!!! AATTTTATAAGGATGTAAAT+GGG + chr1_4:53987388-53987407 Msa0170150:intron 15.0%
!!! TAAAGTTTTATTGTTCTTTA+TGG + chr1_4:53988693-53988712 Msa0170150:intron 15.0%
!!! ATTATTAAATGATGATGATT+TGG - chr1_4:53989299-53989318 None:intergenic 15.0%
!!! TTTGAAATTTAGCTTGAATT+AGG + chr1_4:53983589-53983608 Msa0170150:five_prime_UTR 20.0%
!!! GTTGCTATATTTTTGTTTAT+TGG + chr1_4:53984112-53984131 Msa0170150:intron 20.0%
!! TTAGAGACATAACTAATAAA+TGG + chr1_4:53984344-53984363 Msa0170150:intron 20.0%
!! TAATAAATGGAAAGATCATA+TGG + chr1_4:53984357-53984376 Msa0170150:intron 20.0%
!! AAAGATCAAGCTAATTAAAA+AGG - chr1_4:53984619-53984638 None:intergenic 20.0%
!!! AGCTTTCTTTTAAAAGTATA+GGG - chr1_4:53985218-53985237 None:intergenic 20.0%
!!! ATTTTTACTTATAAGCAACT+CGG + chr1_4:53985243-53985262 Msa0170150:intron 20.0%
!! AAAGTAAATAATCTATCCTA+TGG - chr1_4:53985594-53985613 None:intergenic 20.0%
!! TAAATAATCCCAATAAATAG+AGG - chr1_4:53985707-53985726 None:intergenic 20.0%
!! GTGAAAAATATGAAAAGTAA+AGG + chr1_4:53985752-53985771 Msa0170150:intron 20.0%
!!! ATCCTTCTTTTATAGATTTA+AGG + chr1_4:53986067-53986086 Msa0170150:intron 20.0%
!! TTCCTTAAATCTATAAAAGA+AGG - chr1_4:53986072-53986091 None:intergenic 20.0%
!!! TTTTATAGATTTAAGGAATC+AGG + chr1_4:53986074-53986093 Msa0170150:intron 20.0%
!! TAATTTGGGTATATCAATAT+TGG - chr1_4:53986174-53986193 None:intergenic 20.0%
!! CAAAAGTAATCATAATATCA+AGG - chr1_4:53986369-53986388 None:intergenic 20.0%
!!! CTTGATATTATGATTACTTT+TGG + chr1_4:53986367-53986386 Msa0170150:intron 20.0%
!!! TAGGATTTTTATGAACTAAT+TGG + chr1_4:53986486-53986505 Msa0170150:intron 20.0%
!!! ATTTTACTACTTTTTCTACT+TGG + chr1_4:53986543-53986562 Msa0170150:intron 20.0%
!!! TTACTTCCATTTTGATTTTT+AGG + chr1_4:53986587-53986606 Msa0170150:intron 20.0%
!! AGAATACCTAAAAATCAAAA+TGG - chr1_4:53986596-53986615 None:intergenic 20.0%
!! GTATTAAAAAAACACTAAGT+TGG + chr1_4:53986880-53986899 Msa0170150:intron 20.0%
!!! AATTGTTTTTAATACATTGC+AGG + chr1_4:53986989-53987008 Msa0170150:intron 20.0%
!!! CAATGTTTTTAAACTTCAAA+AGG - chr1_4:53987161-53987180 None:intergenic 20.0%
!!! AGTTTAAAAACATTGTTTTG+TGG + chr1_4:53987166-53987185 Msa0170150:intron 20.0%
!!! TTATTTTAACATAAATGAGC+TGG - chr1_4:53987261-53987280 None:intergenic 20.0%
!! TAATCAAAACAATCACATAA+AGG - chr1_4:53988060-53988079 None:intergenic 20.0%
!!! TTTTGATTACTAGAATACTT+GGG + chr1_4:53988071-53988090 Msa0170150:intron 20.0%
!! TTCTTTGCAACATATATAAT+TGG - chr1_4:53988126-53988145 None:intergenic 20.0%
!!! ATTTTTCCCTCTAATAATAA+TGG + chr1_4:53988655-53988674 Msa0170150:intron 20.0%
!! AATATGCCATTATTATTAGA+GGG - chr1_4:53988664-53988683 None:intergenic 20.0%
!! TGCTACAAAAATTAAGAATT+AGG - chr1_4:53989100-53989119 None:intergenic 20.0%
! TGAAAGAGAAAGAAAGAAAA+TGG - chr1_4:53983056-53983075 None:intergenic 25.0%
! AATTAAGATAGTGAATAGTG+TGG - chr1_4:53983185-53983204 None:intergenic 25.0%
!! TCATATTTTACCTATTTTCG+AGG + chr1_4:53983262-53983281 Msa0170150:five_prime_UTR 25.0%
!!! GTTTTCTTTTTTGAGGTATT+GGG + chr1_4:53983430-53983449 Msa0170150:five_prime_UTR 25.0%
!! ACACTTTTGTATCTCAATTT+TGG + chr1_4:53983486-53983505 Msa0170150:five_prime_UTR 25.0%
!!! ACCTTATATATTGTTTTGCT+AGG + chr1_4:53983723-53983742 Msa0170150:intron 25.0%
! TCCTAGCAAAACAATATATA+AGG - chr1_4:53983727-53983746 None:intergenic 25.0%
!!! TGAAGTTATTGACTTCTATT+GGG + chr1_4:53983856-53983875 Msa0170150:intron 25.0%
! AAACAATATGCATGTCAATA+AGG + chr1_4:53983970-53983989 Msa0170150:intron 25.0%
! ATTTGACAATGAAAAACCTA+AGG + chr1_4:53984255-53984274 Msa0170150:intron 25.0%
! TTTGACAATGAAAAACCTAA+GGG + chr1_4:53984256-53984275 Msa0170150:intron 25.0%
!!! CTGTTTTTCTATTTTTCCAA+TGG - chr1_4:53984505-53984524 None:intergenic 25.0%
! AGAAAAACAGAGAAAACAAA+TGG + chr1_4:53984515-53984534 Msa0170150:intron 25.0%
! TTGAGGGGAAAAATAATAAA+AGG - chr1_4:53984899-53984918 None:intergenic 25.0%
!! AACTCCAAACCATTTTAAAT+GGG - chr1_4:53985053-53985072 None:intergenic 25.0%
! ACTTGTTTAACTATTGCAAT+AGG + chr1_4:53985125-53985144 Msa0170150:CDS 25.0%
!!! GAGCTTTCTTTTAAAAGTAT+AGG - chr1_4:53985219-53985238 None:intergenic 25.0%
! AATCACAACTGAAACTAATT+CGG - chr1_4:53985452-53985471 None:intergenic 25.0%
!!! TCAACTTAATTGATTTGATG+AGG + chr1_4:53985504-53985523 Msa0170150:intron 25.0%
! GAGATCATTAGGAAATTATT+AGG - chr1_4:53985551-53985570 None:intergenic 25.0%
!! AAAGTATTAAAGGAAAAGCA+AGG - chr1_4:53985658-53985677 None:intergenic 25.0%
!! ATTTCATTCTTTAGTTTAGG+AGG - chr1_4:53985781-53985800 None:intergenic 25.0%
!!! CTAAGATGTTATGTTTTGAA+TGG + chr1_4:53986025-53986044 Msa0170150:intron 25.0%
!!! ATGTTATGTTTTGAATGGAA+GGG + chr1_4:53986030-53986049 Msa0170150:intron 25.0%
!!! TATGTGTTTCTGGAAATAAA+AGG - chr1_4:53986116-53986135 None:intergenic 25.0%
!!! TCTTGCTTTAAGATAGAAAA+TGG - chr1_4:53986321-53986340 None:intergenic 25.0%
! TATACACAATTCAACTATGT+AGG + chr1_4:53986467-53986486 Msa0170150:intron 25.0%
!!! GATTTTTAGGTATTCTTTTC+AGG + chr1_4:53986600-53986619 Msa0170150:intron 25.0%
!!! TTTAACTTGATTTCCAAGAA+TGG - chr1_4:53986799-53986818 None:intergenic 25.0%
!!! ATTCTGTGCTGATTTTTTTT+TGG + chr1_4:53986951-53986970 Msa0170150:intron 25.0%
! CAGGTATACATAATTGATTA+CGG + chr1_4:53987008-53987027 Msa0170150:intron 25.0%
! TTAAACTTCAAAAGGTGAAA+AGG - chr1_4:53987153-53987172 None:intergenic 25.0%
!!! TAGACTTCATATTCCTTTTT+TGG + chr1_4:53987283-53987302 Msa0170150:intron 25.0%
! ATCATTATGTATTCAAGACA+AGG - chr1_4:53987328-53987347 None:intergenic 25.0%
!! CAGACAGGTTAAATTTTATA+AGG + chr1_4:53987377-53987396 Msa0170150:intron 25.0%
!! CAAGTTTGGGAATATTATTT+TGG - chr1_4:53987458-53987477 None:intergenic 25.0%
! AACGATAAATAAACAAGTGA+TGG - chr1_4:53987541-53987560 None:intergenic 25.0%
!!! GTTTTGATTACTAGAATACT+TGG + chr1_4:53988070-53988089 Msa0170150:intron 25.0%
! AAGTATGATGTAAATTCCAA+CGG - chr1_4:53988192-53988211 None:intergenic 25.0%
! GAATTCAAATTTAACCTTCT+CGG - chr1_4:53988293-53988312 None:intergenic 25.0%
! ATTTAGTAATGTTTCTTCAC+AGG + chr1_4:53988350-53988369 Msa0170150:intron 25.0%
! AGTTTGATTATGTGTTTGAT+TGG + chr1_4:53988378-53988397 Msa0170150:CDS 25.0%
!! ATATTGAAGTATCCACAAAT+TGG + chr1_4:53988404-53988423 Msa0170150:CDS 25.0%
!!! TGTATTTCTAGCAAAACTAA+AGG + chr1_4:53988499-53988518 Msa0170150:intron 25.0%
! GAATATGCCATTATTATTAG+AGG - chr1_4:53988665-53988684 None:intergenic 25.0%
! GATTGTTATGCTTATATTTC+AGG + chr1_4:53988863-53988882 Msa0170150:intron 25.0%
!! TATATTTTCCATCCAATGTT+GGG + chr1_4:53989505-53989524 Msa0170150:three_prime_UTR 25.0%
! TCATAAAGAAATTCCTTGAA+TGG - chr1_4:53989532-53989551 None:intergenic 25.0%
! ATTTCTTTATGAAGAAGCTT+TGG + chr1_4:53989540-53989559 Msa0170150:three_prime_UTR 25.0%
!!! ATTTTTTTCTGCTGAAGAAA+AGG + chr1_4:53989693-53989712 Msa0170150:three_prime_UTR 25.0%
! AAAATTGCTATGTAAGTTTC+TGG + chr1_4:53989735-53989754 Msa0170150:three_prime_UTR 25.0%
!!! ACAAATTGATGATTTGTTCA+AGG - chr1_4:53989861-53989880 None:intergenic 25.0%
!! TTTTTGCTTAAATGCAGTTT+TGG + chr1_4:53989893-53989912 Msa0170150:three_prime_UTR 25.0%
!!! TTGCAGTTTTAGCAAAATAA+GGG - chr1_4:53989921-53989940 None:intergenic 25.0%
!!! ATTGCAGTTTTAGCAAAATA+AGG - chr1_4:53989922-53989941 None:intergenic 25.0%
! AATTTTGCTGGGAAAATTTC+GGG - chr1_4:53983107-53983126 None:intergenic 30.0%
! GAATTTTGCTGGGAAAATTT+CGG - chr1_4:53983108-53983127 None:intergenic 30.0%
TTAAATTTGAGTCGATGAAG+TGG - chr1_4:53983220-53983239 None:intergenic 30.0%
!! TTTGTGGGTTTTCTTTTTTG+AGG + chr1_4:53983423-53983442 Msa0170150:five_prime_UTR 30.0%
!!! GGTTTTCTTTTTTGAGGTAT+TGG + chr1_4:53983429-53983448 Msa0170150:five_prime_UTR 30.0%
TAAGATTGTGCTGGAAATAT+AGG + chr1_4:53983512-53983531 Msa0170150:five_prime_UTR 30.0%
!! TTTAGCTTGAATTAGGAGAT+TGG + chr1_4:53983596-53983615 Msa0170150:five_prime_UTR 30.0%
! TTAGCTTGAATTAGGAGATT+GGG + chr1_4:53983597-53983616 Msa0170150:five_prime_UTR 30.0%
! TCGTTTTCTATGCTTTTGTT+TGG + chr1_4:53983782-53983801 Msa0170150:intron 30.0%
!! GTGAAGTTATTGACTTCTAT+TGG + chr1_4:53983855-53983874 Msa0170150:intron 30.0%
!!! AGGAATGTTGATTTTTCTAC+TGG + chr1_4:53983884-53983903 Msa0170150:intron 30.0%
TGGTTACTTGAATTTCAGTT+AGG + chr1_4:53984132-53984151 Msa0170150:intron 30.0%
! ACATGTTGCCTTTAAAAGAA+AGG + chr1_4:53984203-53984222 Msa0170150:intron 30.0%
TTTAAGGATAACGATTGAGT+TGG + chr1_4:53984230-53984249 Msa0170150:intron 30.0%
ATGGCTATAGTATGATCAAA+TGG + chr1_4:53984376-53984395 Msa0170150:intron 30.0%
CAGACTATATTTGTAACCAT+TGG + chr1_4:53984486-53984505 Msa0170150:intron 30.0%
AAGCTAATTAAAAAGGATGC+TGG - chr1_4:53984612-53984631 None:intergenic 30.0%
! AGCTTGATCTTTTAAACAAC+TGG + chr1_4:53984627-53984646 Msa0170150:intron 30.0%
CTGAATGCAAAATGAAAATC+TGG - chr1_4:53984705-53984724 None:intergenic 30.0%
TGACAAACAAAGGAAGAAAA+AGG - chr1_4:53984794-53984813 None:intergenic 30.0%
!! TTTTTCTTCCTTTGTTTGTC+AGG + chr1_4:53984793-53984812 Msa0170150:intron 30.0%
AAATTGTACATGCTTCTTCA+AGG + chr1_4:53984857-53984876 Msa0170150:CDS 30.0%
AATTGTACATGCTTCTTCAA+GGG + chr1_4:53984858-53984877 Msa0170150:CDS 30.0%
! ATGAAGAAGCATAATTTGAG+GGG - chr1_4:53984914-53984933 None:intergenic 30.0%
! GATGAAGAAGCATAATTTGA+GGG - chr1_4:53984915-53984934 None:intergenic 30.0%
! AGATGAAGAAGCATAATTTG+AGG - chr1_4:53984916-53984935 None:intergenic 30.0%
!! TTCCTCTTTTCTTTTTGAAG+CGG + chr1_4:53985021-53985040 Msa0170150:intron 30.0%
! ATTCCCCATTTAAAATGGTT+TGG + chr1_4:53985046-53985065 Msa0170150:CDS 30.0%
! ACTCCAAACCATTTTAAATG+GGG - chr1_4:53985052-53985071 None:intergenic 30.0%
! CAACTCCAAACCATTTTAAA+TGG - chr1_4:53985054-53985073 None:intergenic 30.0%
! TTTAAAATGGTTTGGAGTTG+AGG + chr1_4:53985054-53985073 Msa0170150:CDS 30.0%
! TTAAAATGGTTTGGAGTTGA+GGG + chr1_4:53985055-53985074 Msa0170150:CDS 30.0%
! AAAGCCTGACAACTTTTTAA+TGG + chr1_4:53985325-53985344 Msa0170150:CDS 30.0%
! AAGCCTGACAACTTTTTAAT+GGG + chr1_4:53985326-53985345 Msa0170150:CDS 30.0%
AAACCCATTAAAAAGTTGTC+AGG - chr1_4:53985332-53985351 None:intergenic 30.0%
!!! GACAACTTTTTAATGGGTTT+AGG + chr1_4:53985332-53985351 Msa0170150:CDS 30.0%
ATAATCTATCCTATGGATAG+TGG - chr1_4:53985587-53985606 None:intergenic 30.0%
TATTAAAGGAAAAGCAAGGT+CGG - chr1_4:53985654-53985673 None:intergenic 30.0%
! TGGGTGAGATAAAGTATTAA+AGG - chr1_4:53985668-53985687 None:intergenic 30.0%
AATCGTACTCGTATTTATTG+AGG + chr1_4:53985730-53985749 Msa0170150:intron 30.0%
TTCTATTCGCTCGATATATA+TGG + chr1_4:53985844-53985863 Msa0170150:intron 30.0%
! ATCTTTTTGTTAAGATGCCA+TGG - chr1_4:53985957-53985976 None:intergenic 30.0%
!! GATGTTATGTTTTGAATGGA+AGG + chr1_4:53986029-53986048 Msa0170150:intron 30.0%
!! TGTTATGTTTTGAATGGAAG+GGG + chr1_4:53986031-53986050 Msa0170150:intron 30.0%
! AACTGCAATGAAGTTTTACA+TGG - chr1_4:53986222-53986241 None:intergenic 30.0%
! TTCATGTCTCTAATTTTGAG+AGG + chr1_4:53986269-53986288 Msa0170150:intron 30.0%
TAATATCAAGGCTGACAAAT+GGG - chr1_4:53986357-53986376 None:intergenic 30.0%
ATAATATCAAGGCTGACAAA+TGG - chr1_4:53986358-53986377 None:intergenic 30.0%
! AATTGGACAGTATTTCTACT+AGG + chr1_4:53986503-53986522 Msa0170150:intron 30.0%
AACAGAACTCAATGAATCAA+AGG - chr1_4:53986569-53986588 None:intergenic 30.0%
GAATTAGATGTAACTACAGA+AGG - chr1_4:53986660-53986679 None:intergenic 30.0%
GAATTGAAAAATTGTACTCC+TGG + chr1_4:53986714-53986733 Msa0170150:intron 30.0%
TTTCCAAGAATGGCTTATTA+TGG - chr1_4:53986789-53986808 None:intergenic 30.0%
GGAAATCAAGTTAAACATGA+AGG + chr1_4:53986804-53986823 Msa0170150:intron 30.0%
! TGTTTGAGTCTGAATTTGTT+TGG - chr1_4:53986833-53986852 None:intergenic 30.0%
! CTAAATTTGTTCCTTGAGTA+CGG + chr1_4:53987110-53987129 Msa0170150:intron 30.0%
! TAAATTTGTTCCTTGAGTAC+GGG + chr1_4:53987111-53987130 Msa0170150:intron 30.0%
!!! TATTCCTTTTTTGGATTCCT+TGG + chr1_4:53987292-53987311 Msa0170150:intron 30.0%
!!! ATTCCTTTTTTGGATTCCTT+GGG + chr1_4:53987293-53987312 Msa0170150:intron 30.0%
!!! ATTATTTTGGATGCTGATTC+AGG - chr1_4:53987445-53987464 None:intergenic 30.0%
! TTGTGCTAATCAACTCTTTT+CGG + chr1_4:53988523-53988542 Msa0170150:intron 30.0%
TGTTATGCTTATATTTCAGG+TGG + chr1_4:53988866-53988885 Msa0170150:intron 30.0%
!! CCTTCATAACAAAGTTTTGA+AGG - chr1_4:53989053-53989072 None:intergenic 30.0%
! CCTTCAAAACTTTGTTATGA+AGG + chr1_4:53989050-53989069 Msa0170150:intron 30.0%
TCATTTAATAATCGTGCTTC+TGG + chr1_4:53989307-53989326 Msa0170150:CDS 30.0%
CATTTAATAATCGTGCTTCT+GGG + chr1_4:53989308-53989327 Msa0170150:CDS 30.0%
ATTTAATAATCGTGCTTCTG+GGG + chr1_4:53989309-53989328 Msa0170150:CDS 30.0%
ATATACAGAGCAATCAACAA+GGG - chr1_4:53989490-53989509 None:intergenic 30.0%
AATATACAGAGCAATCAACA+AGG - chr1_4:53989491-53989510 None:intergenic 30.0%
! GTATATTTTCCATCCAATGT+TGG + chr1_4:53989504-53989523 Msa0170150:three_prime_UTR 30.0%
AACACCAAAAGAGATATAAG+AGG - chr1_4:53989572-53989591 None:intergenic 30.0%
GTACAAAATATGCATCACAA+GGG - chr1_4:53989762-53989781 None:intergenic 30.0%
TATGTTCTAGTGTACATTCA+TGG + chr1_4:53989790-53989809 Msa0170150:three_prime_UTR 30.0%
!! TGCAGTTTTAGCAAAATAAG+GGG - chr1_4:53989920-53989939 None:intergenic 30.0%
AAAAGTTGTGATGTGAAGTC+AGG - chr1_4:53983021-53983040 None:intergenic 35.0%
AATAGTGTGGAAAGAGGATA+TGG - chr1_4:53983172-53983191 None:intergenic 35.0%
ATAGTGAATAGTGTGGAAAG+AGG - chr1_4:53983178-53983197 None:intergenic 35.0%
! TGAAAAGGGTGTGAGAAAAA+TGG - chr1_4:53983245-53983264 None:intergenic 35.0%
!! TACCTATTTTCGAGGAAAAG+AGG + chr1_4:53983270-53983289 Msa0170150:five_prime_UTR 35.0%
! TTCCTCTTTTCCTCGAAAAT+AGG - chr1_4:53983275-53983294 None:intergenic 35.0%
! TTTTCTCTCTGTTCTGTTTG+TGG + chr1_4:53983407-53983426 Msa0170150:five_prime_UTR 35.0%
TTTCTCTCTGTTCTGTTTGT+GGG + chr1_4:53983408-53983427 Msa0170150:five_prime_UTR 35.0%
!! TTTTGGATCTAAGATTGTGC+TGG + chr1_4:53983503-53983522 Msa0170150:five_prime_UTR 35.0%
AATTGATGTGTGTAGTAGAG+TGG + chr1_4:53983565-53983584 Msa0170150:five_prime_UTR 35.0%
!! GTGATGATGGATCATGTAAT+TGG + chr1_4:53983624-53983643 Msa0170150:exon 35.0%
!! ATGATGGATCATGTAATTGG+TGG + chr1_4:53983627-53983646 Msa0170150:CDS 35.0%
ATTGGTGGAAAATTCAAGCT+CGG + chr1_4:53983642-53983661 Msa0170150:CDS 35.0%
!! TCTATGCTTTTGTTTGGTTC+AGG + chr1_4:53983788-53983807 Msa0170150:intron 35.0%
TCAGGTGTTAATGTACAAAC+TGG + chr1_4:53983806-53983825 Msa0170150:intron 35.0%
TGTTAATGTACAAACTGGAG+AGG + chr1_4:53983811-53983830 Msa0170150:CDS 35.0%
AGAGGAAGTTGCTCTTAAAT+TGG + chr1_4:53983829-53983848 Msa0170150:CDS 35.0%
! TTTTTCTACTGGTGCATAGA+TGG + chr1_4:53983895-53983914 Msa0170150:intron 35.0%
CAATGCATTGCAATATGAAG+GGG - chr1_4:53984040-53984059 None:intergenic 35.0%
GCAATGCATTGCAATATGAA+GGG - chr1_4:53984041-53984060 None:intergenic 35.0%
ATGAAAAACCTAAGGGAGAT+TGG + chr1_4:53984263-53984282 Msa0170150:intron 35.0%
ACATAATGTACCTAGAGTCT+TGG + chr1_4:53984425-53984444 Msa0170150:intron 35.0%
GTTTACATCATTTGACATGC+TGG + chr1_4:53984553-53984572 Msa0170150:intron 35.0%
CAATATCTATCCACATCTGT+TGG + chr1_4:53984585-53984604 Msa0170150:intron 35.0%
!! AGCTTAACTTTGAAACAGCT+AGG - chr1_4:53984754-53984773 None:intergenic 35.0%
ATTGTACATGCTTCTTCAAG+GGG + chr1_4:53984859-53984878 Msa0170150:CDS 35.0%
!!! TCCTCTTTTCTTTTTGAAGC+GGG + chr1_4:53985022-53985041 Msa0170150:intron 35.0%
TTAAACAAGTCTTCCAGACT+TGG - chr1_4:53985115-53985134 None:intergenic 35.0%
! AGTTGTCAGGCTTTATATCA+CGG - chr1_4:53985319-53985338 None:intergenic 35.0%
CATAAATGACCAACCAGATA+AGG - chr1_4:53985409-53985428 None:intergenic 35.0%
ACTACACACTAGAGATCATT+AGG - chr1_4:53985562-53985581 None:intergenic 35.0%
AATAAATAGAGGCTACACAC+AGG - chr1_4:53985696-53985715 None:intergenic 35.0%
TGTGTGTAGCCTCTATTTAT+TGG + chr1_4:53985695-53985714 Msa0170150:intron 35.0%
GTGTGTAGCCTCTATTTATT+GGG + chr1_4:53985696-53985715 Msa0170150:intron 35.0%
!! ACAACATGGCTTTATCAGAT+CGG - chr1_4:53985908-53985927 None:intergenic 35.0%
CCAAGACAGAGAATGTTATT+TGG - chr1_4:53985989-53986008 None:intergenic 35.0%
CCAAATAACATTCTCTGTCT+TGG + chr1_4:53985986-53986005 Msa0170150:intron 35.0%
AGTTGAAAGCTATGTGTTTC+TGG - chr1_4:53986126-53986145 None:intergenic 35.0%
AATATCAAGGCTGACAAATG+GGG - chr1_4:53986356-53986375 None:intergenic 35.0%
TACTAGGAGTCTGTTTATTG+AGG + chr1_4:53986519-53986538 Msa0170150:intron 35.0%
TAGATGTAACTACAGAAGGT+GGG - chr1_4:53986656-53986675 None:intergenic 35.0%
TTAGATGTAACTACAGAAGG+TGG - chr1_4:53986657-53986676 None:intergenic 35.0%
! ATAGTGTGTAGTTGGTTCTT+AGG - chr1_4:53986745-53986764 None:intergenic 35.0%
AGACCATAATAAGCCATTCT+TGG + chr1_4:53986783-53986802 Msa0170150:intron 35.0%
TCAGACTCAAACAATGTCAT+AGG + chr1_4:53986840-53986859 Msa0170150:intron 35.0%
AAACAAACATGGTACCTGTA+TGG - chr1_4:53987077-53987096 None:intergenic 35.0%
CATGCTACAGTAAACAAACA+TGG - chr1_4:53987088-53987107 None:intergenic 35.0%
! AAATTTGTTCCTTGAGTACG+GGG + chr1_4:53987112-53987131 Msa0170150:intron 35.0%
GGTGAAAAGGAAACATGATA+TGG - chr1_4:53987140-53987159 None:intergenic 35.0%
ACAGAAGCAAACAACATACT+GGG - chr1_4:53987199-53987218 None:intergenic 35.0%
TACAGAAGCAAACAACATAC+TGG - chr1_4:53987200-53987219 None:intergenic 35.0%
CATAATGATTGTTGTGTTGC+TGG + chr1_4:53987339-53987358 Msa0170150:intron 35.0%
! ATTGTTGTGTTGCTGGATTT+GGG + chr1_4:53987346-53987365 Msa0170150:intron 35.0%
CTTCAGGTAATGACACATAT+GGG - chr1_4:53987518-53987537 None:intergenic 35.0%
AATAAACAAGTGATGGCTTC+AGG - chr1_4:53987534-53987553 None:intergenic 35.0%
ATGGTCATTCACAGAAGAAA+AGG - chr1_4:53987603-53987622 None:intergenic 35.0%
! TTTTCTTCTGTGAATGACCA+TGG + chr1_4:53987602-53987621 Msa0170150:intron 35.0%
AGTATTAACACTTGCATACC+GGG - chr1_4:53987667-53987686 None:intergenic 35.0%
GAGTATTAACACTTGCATAC+CGG - chr1_4:53987668-53987687 None:intergenic 35.0%
GCAAGTGTTAATACTCATCT+AGG + chr1_4:53987672-53987691 Msa0170150:CDS 35.0%
GTTAATACTCATCTAGGAGT+TGG + chr1_4:53987678-53987697 Msa0170150:CDS 35.0%
!! GTACTCATGTACTTTTTGAG+AGG + chr1_4:53987844-53987863 Msa0170150:CDS 35.0%
!! TCATGTACTTTTTGAGAGGA+AGG + chr1_4:53987848-53987867 Msa0170150:CDS 35.0%
CTCTTGAGATACGAATAATC+AGG - chr1_4:53988249-53988268 None:intergenic 35.0%
TTTAACCTTCTCGGATGAAT+AGG - chr1_4:53988284-53988303 None:intergenic 35.0%
! ACAAATTGGATCTAGTTCCA+GGG + chr1_4:53988418-53988437 Msa0170150:CDS 35.0%
ACACAACACTTCACAAAATG+AGG - chr1_4:53988472-53988491 None:intergenic 35.0%
!!! TTCTTTTTCAACAGCCAAGT+GGG + chr1_4:53988546-53988565 Msa0170150:intron 35.0%
ATTTCAGTCCTACAGTTGTA+TGG + chr1_4:53988812-53988831 Msa0170150:intron 35.0%
TCCTACAGTTGTATGGTAAA+AGG + chr1_4:53988819-53988838 Msa0170150:intron 35.0%
TTGTTTGTCAGTTTGTGTGT+TGG + chr1_4:53989024-53989043 Msa0170150:intron 35.0%
TGTTTGTCAGTTTGTGTGTT+GGG + chr1_4:53989025-53989044 Msa0170150:intron 35.0%
! GACTCCTCTTATATCTCTTT+TGG + chr1_4:53989565-53989584 Msa0170150:three_prime_UTR 35.0%
CTTCCATGAATATTTCAGCA+TGG + chr1_4:53989592-53989611 Msa0170150:three_prime_UTR 35.0%
CATCCATGCTGAAATATTCA+TGG - chr1_4:53989598-53989617 None:intergenic 35.0%
CATGAATATTTCAGCATGGA+TGG + chr1_4:53989596-53989615 Msa0170150:three_prime_UTR 35.0%
GGCTGCTTGTAATAATTACA+TGG + chr1_4:53989667-53989686 Msa0170150:three_prime_UTR 35.0%
GGTACAAAATATGCATCACA+AGG - chr1_4:53989763-53989782 None:intergenic 35.0%
TACACTAGAACATAGTACTC+AGG - chr1_4:53989784-53989803 None:intergenic 35.0%
TCTAGTGTACATTCATGGAA+TGG + chr1_4:53989795-53989814 Msa0170150:three_prime_UTR 35.0%
GTACATTCATGGAATGGAAT+TGG + chr1_4:53989801-53989820 Msa0170150:three_prime_UTR 35.0%
! GATTTGTTCAAGGAGAAGAT+TGG - chr1_4:53989851-53989870 None:intergenic 35.0%
!! CCACTTTTCTTTCCTTTTCC+CGG + chr1_4:53983078-53983097 Msa0170150:five_prime_UTR 40.0%
! GACAAGGTGTGAATTTTGCT+GGG - chr1_4:53983118-53983137 None:intergenic 40.0%
!!! TATGGATTGGTGTTGGGTTT+TGG - chr1_4:53983154-53983173 None:intergenic 40.0%
!! AGAGGATATGGATTGGTGTT+GGG - chr1_4:53983160-53983179 None:intergenic 40.0%
!! AAGAGGATATGGATTGGTGT+TGG - chr1_4:53983161-53983180 None:intergenic 40.0%
TGTGGAAAGAGGATATGGAT+TGG - chr1_4:53983167-53983186 None:intergenic 40.0%
TGAGTCGATGAAGTGGAATT+GGG - chr1_4:53983213-53983232 None:intergenic 40.0%
TTGAGTCGATGAAGTGGAAT+TGG - chr1_4:53983214-53983233 None:intergenic 40.0%
!! ATCGATTTTGCGTGCAATTC+AGG + chr1_4:53983322-53983341 Msa0170150:five_prime_UTR 40.0%
! TCGATTTTGCGTGCAATTCA+GGG + chr1_4:53983323-53983342 Msa0170150:five_prime_UTR 40.0%
!! GAGATTGGGTTTTGTGATGA+TGG + chr1_4:53983611-53983630 Msa0170150:exon 40.0%
TTCAAGCTCGGAAGGAAAAT+TGG + chr1_4:53983654-53983673 Msa0170150:CDS 40.0%
!! AAAATTGGTGGTGGGTCATT+TGG + chr1_4:53983669-53983688 Msa0170150:CDS 40.0%
TCATTTGGAGAGCTCTACTT+GGG + chr1_4:53983684-53983703 Msa0170150:CDS 40.0%
TTGACTTCTATTGGGTGCTT+AGG + chr1_4:53983864-53983883 Msa0170150:intron 40.0%
GGCAATGCATTGCAATATGA+AGG - chr1_4:53984042-53984061 None:intergenic 40.0%
!! CATAGCTAAGTTGGTACTAG+GGG - chr1_4:53984063-53984082 None:intergenic 40.0%
!! GCATAGCTAAGTTGGTACTA+GGG - chr1_4:53984064-53984083 None:intergenic 40.0%
!! AGCATAGCTAAGTTGGTACT+AGG - chr1_4:53984065-53984084 None:intergenic 40.0%
TACCAACTTAGCTATGCTCA+CGG + chr1_4:53984067-53984086 Msa0170150:intron 40.0%
GTACAATATGCCAAGACTCT+AGG - chr1_4:53984438-53984457 None:intergenic 40.0%
GCATTCAGTCAGTCTTAGTT+TGG + chr1_4:53984717-53984736 Msa0170150:intron 40.0%
GTAGTGAAGTTGAGGATGTT+TGG - chr1_4:53984831-53984850 None:intergenic 40.0%
! TTTGACTCGTAGTGAAGTTG+AGG - chr1_4:53984839-53984858 None:intergenic 40.0%
TTGTACATGCTTCTTCAAGG+GGG + chr1_4:53984860-53984879 Msa0170150:CDS 40.0%
ACCCGCTTCAAAAAGAAAAG+AGG - chr1_4:53985026-53985045 None:intergenic 40.0%
CGGGTATTCCCCATTTAAAA+TGG + chr1_4:53985041-53985060 Msa0170150:CDS 40.0%
TGCAGATCAGCTAGTAAGTA+TGG + chr1_4:53985177-53985196 Msa0170150:intron 40.0%
! TTTAGGACGCAAAGCAAATC+AGG + chr1_4:53985349-53985368 Msa0170150:CDS 40.0%
AGTCAATGCTGGATATGTAG+TGG - chr1_4:53985377-53985396 None:intergenic 40.0%
! GACTTGAATTCAGCCTTATC+TGG + chr1_4:53985393-53985412 Msa0170150:intron 40.0%
! TGAATTCAGCCTTATCTGGT+TGG + chr1_4:53985397-53985416 Msa0170150:intron 40.0%
GTGTAGTATCCACTATCCAT+AGG + chr1_4:53985575-53985594 Msa0170150:intron 40.0%
AGGCTACACACAGGTTTATT+GGG - chr1_4:53985687-53985706 None:intergenic 40.0%
! GGAGAGAAGCTTTAACAACA+TGG - chr1_4:53985922-53985941 None:intergenic 40.0%
TTAAGATGCCATGGCTTGAA+TGG - chr1_4:53985948-53985967 None:intergenic 40.0%
! GTTGGTTCTTAGGAAATACC+AGG - chr1_4:53986735-53986754 None:intergenic 40.0%
TGACTAGGATAGTGTGTAGT+TGG - chr1_4:53986753-53986772 None:intergenic 40.0%
GGTCTCAGCTTAAATTGACT+AGG - chr1_4:53986768-53986787 None:intergenic 40.0%
CAATGTCATAGGAACTTGAC+AGG + chr1_4:53986851-53986870 Msa0170150:intron 40.0%
CAGCACAGAATTTCAGCTAT+TGG - chr1_4:53986942-53986961 None:intergenic 40.0%
!!! GATCTCGGAACTTTTTTGCA+AGG - chr1_4:53987034-53987053 None:intergenic 40.0%
CACACAAGCATATACCATAC+AGG + chr1_4:53987060-53987079 Msa0170150:CDS 40.0%
CAACCCAAGGAATCCAAAAA+AGG - chr1_4:53987299-53987318 None:intergenic 40.0%
! GATTGTTGTGTTGCTGGATT+TGG + chr1_4:53987345-53987364 Msa0170150:intron 40.0%
! GAGGATTTTCTTGCATATGC+AGG - chr1_4:53987496-53987515 None:intergenic 40.0%
GCTTCAGGTAATGACACATA+TGG - chr1_4:53987519-53987538 None:intergenic 40.0%
GAAAAGGAGACGAATGTGTA+GGG - chr1_4:53987587-53987606 None:intergenic 40.0%
AGAAAAGGAGACGAATGTGT+AGG - chr1_4:53987588-53987607 None:intergenic 40.0%
! TGACCATGGTACTTTTGTTC+AGG + chr1_4:53987616-53987635 Msa0170150:intron 40.0%
! GACCATGGTACTTTTGTTCA+GGG + chr1_4:53987617-53987636 Msa0170150:intron 40.0%
!! TTCCCTGAACAAAAGTACCA+TGG - chr1_4:53987622-53987641 None:intergenic 40.0%
AGGGAAAACAAAAACCTCAC+TGG + chr1_4:53987636-53987655 Msa0170150:intron 40.0%
ACAAAGCAGAAGAGATGATC+TGG + chr1_4:53987807-53987826 Msa0170150:CDS 40.0%
! AGAGATGATCTGGAATCACT+TGG + chr1_4:53987817-53987836 Msa0170150:CDS 40.0%
GAAGATGCTTACTCCTATAG+AGG + chr1_4:53988011-53988030 Msa0170150:CDS 40.0%
! GCGGGTTATAATACCTCTAT+AGG - chr1_4:53988027-53988046 None:intergenic 40.0%
TATCTTCAAACCGCAACGAT+CGG - chr1_4:53988224-53988243 None:intergenic 40.0%
CTGGAACTAGATCCAATTTG+TGG - chr1_4:53988419-53988438 None:intergenic 40.0%
! CACAAATTGGATCTAGTTCC+AGG + chr1_4:53988417-53988436 Msa0170150:CDS 40.0%
! TGCTATTAAAGTACTCACCC+GGG - chr1_4:53988444-53988463 None:intergenic 40.0%
! GTGCTATTAAAGTACTCACC+CGG - chr1_4:53988445-53988464 None:intergenic 40.0%
!!! GTTCTTTTTCAACAGCCAAG+TGG + chr1_4:53988545-53988564 Msa0170150:intron 40.0%
!! TTTATGACTGGTTTCCCACT+TGG - chr1_4:53988563-53988582 None:intergenic 40.0%
GATTGTCCTGGATTTATGAC+TGG - chr1_4:53988575-53988594 None:intergenic 40.0%
GTCATAAATCCAGGACAATC+AGG + chr1_4:53988575-53988594 Msa0170150:CDS 40.0%
AATCAGGAGAGAGAGTAGAA+CGG + chr1_4:53988591-53988610 Msa0170150:CDS 40.0%
! GCCTTTTACCATACAACTGT+AGG - chr1_4:53988823-53988842 None:intergenic 40.0%
! AGTTGTATGGTAAAAGGCGT+TGG + chr1_4:53988825-53988844 Msa0170150:intron 40.0%
AGAGATTCGGGATAGATTCT+CGG + chr1_4:53988892-53988911 Msa0170150:CDS 40.0%
TTTGCAAGAAGGAATGGATC+TGG + chr1_4:53988929-53988948 Msa0170150:CDS 40.0%
! CTAACCACGTCTTTAGAAGA+TGG - chr1_4:53989001-53989020 None:intergenic 40.0%
! GCTTGATAAGACAGGTCTTT+TGG - chr1_4:53989170-53989189 None:intergenic 40.0%
AGACTTCTTGAGTCAAGCAA+GGG + chr1_4:53989423-53989442 Msa0170150:three_prime_UTR 40.0%
CATGTTGTCTCTTCGTGAAT+GGG - chr1_4:53989623-53989642 None:intergenic 40.0%
ACATGTTGTCTCTTCGTGAA+TGG - chr1_4:53989624-53989643 None:intergenic 40.0%
GTTGTGATGTGAAGTCAGGT+GGG - chr1_4:53983017-53983036 None:intergenic 45.0%
AGTTGTGATGTGAAGTCAGG+TGG - chr1_4:53983018-53983037 None:intergenic 45.0%
CCGGGAAAAGGAAAGAAAAG+TGG - chr1_4:53983081-53983100 None:intergenic 45.0%
AATTTCGGGATTCCGGGAAA+AGG - chr1_4:53983093-53983112 None:intergenic 45.0%
TGGGAAAATTTCGGGATTCC+GGG - chr1_4:53983099-53983118 None:intergenic 45.0%
CTGGGAAAATTTCGGGATTC+CGG - chr1_4:53983100-53983119 None:intergenic 45.0%
! GGACAAGGTGTGAATTTTGC+TGG - chr1_4:53983119-53983138 None:intergenic 45.0%
! TGGATCTGTCTTTGAGGACA+AGG - chr1_4:53983134-53983153 None:intergenic 45.0%
!!! GGGTTTTGGATCTGTCTTTG+AGG - chr1_4:53983140-53983159 None:intergenic 45.0%
GAGTCGATGAAGTGGAATTG+GGG - chr1_4:53983212-53983231 None:intergenic 45.0%
GTGGAAAATTCAAGCTCGGA+AGG + chr1_4:53983646-53983665 Msa0170150:CDS 45.0%
AAGCTCGGAAGGAAAATTGG+TGG + chr1_4:53983657-53983676 Msa0170150:CDS 45.0%
! TCGGAAGGAAAATTGGTGGT+GGG + chr1_4:53983661-53983680 Msa0170150:CDS 45.0%
GTCATTTGGAGAGCTCTACT+TGG + chr1_4:53983683-53983702 Msa0170150:CDS 45.0%
ACCAACTTAGCTATGCTCAC+GGG + chr1_4:53984068-53984087 Msa0170150:intron 45.0%
ACCTAAGGGAGATTGGTACT+TGG + chr1_4:53984270-53984289 Msa0170150:intron 45.0%
CACAGGTTCCTGACAAACAA+AGG - chr1_4:53984804-53984823 None:intergenic 45.0%
! TGAGGATGTTTGGTCTTCAC+AGG - chr1_4:53984821-53984840 None:intergenic 45.0%
TATCACGGTGAAGGAAACCA+CGG - chr1_4:53985304-53985323 None:intergenic 45.0%
! CAGGCTTTATATCACGGTGA+AGG - chr1_4:53985313-53985332 None:intergenic 45.0%
GGCTGAATTCAAGTCAATGC+TGG - chr1_4:53985388-53985407 None:intergenic 45.0%
GAGGCTACACACAGGTTTAT+TGG - chr1_4:53985688-53985707 None:intergenic 45.0%
CGGTGTAAAGCTTTCTTGCA+GGG - chr1_4:53985888-53985907 None:intergenic 45.0%
TCGGTGTAAAGCTTTCTTGC+AGG - chr1_4:53985889-53985908 None:intergenic 45.0%
!! TGTTTTGAATGGAAGGGGAC+TGG + chr1_4:53986036-53986055 Msa0170150:intron 45.0%
GCTTGTGTGTGTGAAGATCT+CGG - chr1_4:53987049-53987068 None:intergenic 45.0%
AGCAAACAACATACTGGGCA+GGG - chr1_4:53987194-53987213 None:intergenic 45.0%
AAGCAAACAACATACTGGGC+AGG - chr1_4:53987195-53987214 None:intergenic 45.0%
! GTTGCTGGATTTGGGATAAC+TGG + chr1_4:53987354-53987373 Msa0170150:intron 45.0%
! ATTTGGGATAACTGGCAGAC+AGG + chr1_4:53987362-53987381 Msa0170150:intron 45.0%
! GCAGGTGAAGGTTCAAGTTT+GGG - chr1_4:53987471-53987490 None:intergenic 45.0%
! AGCAGGTGAAGGTTCAAGTT+TGG - chr1_4:53987472-53987491 None:intergenic 45.0%
CAGGTAATGACACATATGGG+AGG - chr1_4:53987515-53987534 None:intergenic 45.0%
CAGCTTTCAAACCTTGCCAA+GGG - chr1_4:53987954-53987973 None:intergenic 45.0%
ACATAAAGGCTGCTTGCAAG+CGG - chr1_4:53988046-53988065 None:intergenic 45.0%
ATTGCATGAGTTTCTGCGTC+AGG + chr1_4:53988149-53988168 Msa0170150:intron 45.0%
GGGAAACCAGTCATAAATCC+AGG + chr1_4:53988566-53988585 Msa0170150:CDS 45.0%
TGTCGAAGGAAGAAACCTGA+AGG - chr1_4:53988617-53988636 None:intergenic 45.0%
! ATTCCAGATCTTGCTGTCGA+AGG - chr1_4:53988631-53988650 None:intergenic 45.0%
! GCGTTGGTCAAGTTCAACTA+AGG + chr1_4:53988841-53988860 Msa0170150:intron 45.0%
! TTTCAGGTGGACCAGAGATT+CGG + chr1_4:53988879-53988898 Msa0170150:intron 45.0%
GAGAATCTATCCCGAATCTC+TGG - chr1_4:53988893-53988912 None:intergenic 45.0%
GAGATTCGGGATAGATTCTC+GGG + chr1_4:53988893-53988912 Msa0170150:CDS 45.0%
CAGTTCAGGCATTTGCAAGA+AGG + chr1_4:53988918-53988937 Msa0170150:CDS 45.0%
CAGGCATTTGCAAGAAGGAA+TGG + chr1_4:53988923-53988942 Msa0170150:CDS 45.0%
AATGATCACCATGCACACCA+TGG - chr1_4:53988955-53988974 None:intergenic 45.0%
CTCATCTGAAGATCTATGCC+TGG - chr1_4:53988978-53988997 None:intergenic 45.0%
! TGAGCCATCTTCTAAAGACG+TGG + chr1_4:53988994-53989013 Msa0170150:CDS 45.0%
! TGTAGCAAGCTGATTCTGAG+AGG + chr1_4:53989113-53989132 Msa0170150:intron 45.0%
GTTCACCAGAAGAGTTTGGA+CGG - chr1_4:53989195-53989214 None:intergenic 45.0%
CTTGGTTCACCAGAAGAGTT+TGG - chr1_4:53989199-53989218 None:intergenic 45.0%
TGCTACTGCTCAAGAGCAAT+CGG - chr1_4:53989237-53989256 None:intergenic 45.0%
GCAGACTATCTACTACTCAG+AGG + chr1_4:53989254-53989273 Msa0170150:CDS 45.0%
! GATGATTTGGACTCAAGACC+TGG - chr1_4:53989286-53989305 None:intergenic 45.0%
!! AGCTTTGAACTCCTGTCACT+TGG + chr1_4:53989361-53989380 Msa0170150:CDS 45.0%
! TTTTTCCAGTGCCAAGTGAC+AGG - chr1_4:53989375-53989394 None:intergenic 45.0%
! TGTCACTTGGCACTGGAAAA+AGG + chr1_4:53989374-53989393 Msa0170150:CDS 45.0%
CAGACTTCTTGAGTCAAGCA+AGG + chr1_4:53989422-53989441 Msa0170150:three_prime_UTR 45.0%
TGAATGGACCCAACATTGGA+TGG - chr1_4:53989516-53989535 None:intergenic 45.0%
TCCAATGTTGGGTCCATTCA+AGG + chr1_4:53989516-53989535 Msa0170150:three_prime_UTR 45.0%
TCCTTGAATGGACCCAACAT+TGG - chr1_4:53989520-53989539 None:intergenic 45.0%
TGGAATGGAATTGGCGAGTA+AGG + chr1_4:53989810-53989829 Msa0170150:three_prime_UTR 45.0%
TGGAATTGGCGAGTAAGGAT+TGG + chr1_4:53989815-53989834 Msa0170150:three_prime_UTR 45.0%
GGAATTGGCGAGTAAGGATT+GGG + chr1_4:53989816-53989835 Msa0170150:three_prime_UTR 45.0%
GAATTGGCGAGTAAGGATTG+GGG + chr1_4:53989817-53989836 Msa0170150:three_prime_UTR 45.0%
!!! ATATATATATATATTTTTTG+TGG + chr1_4:53983995-53984014 Msa0170150:intron 5.0%
CAGGTGGGATAGATGAGATG+TGG - chr1_4:53983002-53983021 None:intergenic 50.0%
CTCGGAAGGAAAATTGGTGG+TGG + chr1_4:53983660-53983679 Msa0170150:CDS 50.0%
GTGGTCAAGTAGTAGCCTAG+TGG + chr1_4:53984014-53984033 Msa0170150:intron 50.0%
TGCAATATGAAGGGGCCACT+AGG - chr1_4:53984032-53984051 None:intergenic 50.0%
CCAACTTAGCTATGCTCACG+GGG + chr1_4:53984069-53984088 Msa0170150:intron 50.0%
GCCAAGTACCAATCTCCCTT+AGG - chr1_4:53984274-53984293 None:intergenic 50.0%
! CTTGGCTGATTCCTTTGCGA+CGG + chr1_4:53984288-53984307 Msa0170150:intron 50.0%
ATCAGAAGTCACCGTCGCAA+AGG - chr1_4:53984302-53984321 None:intergenic 50.0%
TGAGGGTGACTACAATGCCA+TGG + chr1_4:53985072-53985091 Msa0170150:CDS 50.0%
TCCAAGGAGGTCAATTGCCA+TGG - chr1_4:53985092-53985111 None:intergenic 50.0%
! AGTCTTCCAGACTTGGTCCA+AGG - chr1_4:53985108-53985127 None:intergenic 50.0%
ATCACGGTGAAGGAAACCAC+GGG - chr1_4:53985303-53985322 None:intergenic 50.0%
ATGCCATGGCTTGAATGGAG+GGG - chr1_4:53985943-53985962 None:intergenic 50.0%
GATGCCATGGCTTGAATGGA+GGG - chr1_4:53985944-53985963 None:intergenic 50.0%
AGATGCCATGGCTTGAATGG+AGG - chr1_4:53985945-53985964 None:intergenic 50.0%
GATATGGAACCCCGTACTCA+AGG - chr1_4:53987124-53987143 None:intergenic 50.0%
GACAAGGTGAAGACAACCCA+AGG - chr1_4:53987312-53987331 None:intergenic 50.0%
TTCTTGCATATGCAGGCAGC+AGG - chr1_4:53987489-53987508 None:intergenic 50.0%
AAAACCTCACTGGAACTGCC+CGG + chr1_4:53987646-53987665 Msa0170150:CDS 50.0%
AACTGTTTCCCAGTCTCCCT+TGG + chr1_4:53987935-53987954 Msa0170150:intron 50.0%
AAACCTTGCCAAGGGAGACT+GGG - chr1_4:53987946-53987965 None:intergenic 50.0%
CCAGCTTTCAAACCTTGCCA+AGG - chr1_4:53987955-53987974 None:intergenic 50.0%
CCTTGGCAAGGTTTGAAAGC+TGG + chr1_4:53987952-53987971 Msa0170150:CDS 50.0%
CATAAAGGCTGCTTGCAAGC+GGG - chr1_4:53988045-53988064 None:intergenic 50.0%
!! TCTGCGTCAGGTTTTGTGCA+AGG + chr1_4:53988161-53988180 Msa0170150:intron 50.0%
TTTGTGCAAGGCACATCCGT+TGG + chr1_4:53988173-53988192 Msa0170150:CDS 50.0%
TCCATTACTGCCGATCGTTG+CGG + chr1_4:53988211-53988230 Msa0170150:CDS 50.0%
CGTGACCTATTCATCCGAGA+AGG + chr1_4:53988276-53988295 Msa0170150:CDS 50.0%
ACTCTCTCTCCTGATTGTCC+TGG - chr1_4:53988587-53988606 None:intergenic 50.0%
CTTCCTTCGACAGCAAGATC+TGG + chr1_4:53988625-53988644 Msa0170150:intron 50.0%
TTCAGGTGGACCAGAGATTC+GGG + chr1_4:53988880-53988899 Msa0170150:intron 50.0%
TAGATTCTCGGGTGCAGTTC+AGG + chr1_4:53988904-53988923 Msa0170150:CDS 50.0%
AGAAGGAATGGATCTGGCCA+TGG + chr1_4:53988935-53988954 Msa0170150:CDS 50.0%
GTGTGCATGGTGATCATTCC+AGG + chr1_4:53988957-53988976 Msa0170150:CDS 50.0%
TCAAGAGCAATCGGCTAGAG+CGG - chr1_4:53989228-53989247 None:intergenic 50.0%
ACTACTCAGAGGACTCAACC+AGG + chr1_4:53989265-53989284 Msa0170150:CDS 50.0%
GTGGTCGTGATGATACACTC+AGG + chr1_4:53989338-53989357 Msa0170150:CDS 50.0%
CTTGAGTCAAGCAAGGGTCA+TGG + chr1_4:53989429-53989448 Msa0170150:three_prime_UTR 50.0%
CCCCGTGAGCATAGCTAAGT+TGG - chr1_4:53984072-53984091 None:intergenic 55.0%
TGCTCACGGGGACGTCAATA+AGG + chr1_4:53984081-53984100 Msa0170150:intron 55.0%
GGATGCTGGTCCAACAGATG+TGG - chr1_4:53984598-53984617 None:intergenic 55.0%
GCCATGGCAATTGACCTCCT+TGG + chr1_4:53985088-53985107 Msa0170150:CDS 55.0%
TGACCTCCTTGGACCAAGTC+TGG + chr1_4:53985099-53985118 Msa0170150:CDS 55.0%
! CTTCCAGACTTGGTCCAAGG+AGG - chr1_4:53985105-53985124 None:intergenic 55.0%
GTTGAGTACATGCACTCCCG+TGG + chr1_4:53985284-53985303 Msa0170150:CDS 55.0%
TCTCCCCTCCATTCAAGCCA+TGG + chr1_4:53985937-53985956 Msa0170150:intron 55.0%
CATATGCAGGCAGCAGGTGA+AGG - chr1_4:53987483-53987502 None:intergenic 55.0%
TTTCCCAGTCTCCCTTGGCA+AGG + chr1_4:53987940-53987959 Msa0170150:intron 55.0%
CAAACCTTGCCAAGGGAGAC+TGG - chr1_4:53987947-53987966 None:intergenic 55.0%
ACCGCAACGATCGGCAGTAA+TGG - chr1_4:53988215-53988234 None:intergenic 55.0%
! TTGGATCTAGTTCCAGGGCC+CGG + chr1_4:53988423-53988442 Msa0170150:CDS 55.0%
GAGAGAGTAGAACGGCCTTC+AGG + chr1_4:53988599-53988618 Msa0170150:CDS 55.0%
GGACGGCTGCTTGATAAGAC+AGG - chr1_4:53989178-53989197 None:intergenic 55.0%
AGCAGCCGTCCAAACTCTTC+TGG + chr1_4:53989187-53989206 Msa0170150:CDS 55.0%
!! AATCGTGCTTCTGGGGCAAG+AGG + chr1_4:53989316-53989335 Msa0170150:CDS 55.0%
! GAACTCCTGTCACTTGGCAC+TGG + chr1_4:53989367-53989386 Msa0170150:CDS 55.0%
CATACCGGGCAGTTCCAGTG+AGG - chr1_4:53987653-53987672 None:intergenic 60.0%
! TGGATCTAGTTCCAGGGCCC+GGG + chr1_4:53988424-53988443 Msa0170150:CDS 60.0%
! TAAAGTACTCACCCGGGCCC+TGG - chr1_4:53988438-53988457 None:intergenic 60.0%
GGATCTGGCCATGGTGTGCA+TGG + chr1_4:53988944-53988963 Msa0170150:CDS 60.0%
CCGTGACGAGAAGAGCTACG+CGG - chr1_4:53989139-53989158 None:intergenic 60.0%
CCGCGTAGCTCTTCTCGTCA+CGG + chr1_4:53989136-53989155 Msa0170150:CDS 60.0%
CGGCTAGAGCGGCTTTCACT+TGG - chr1_4:53989217-53989236 None:intergenic 60.0%
!! CGTGCTTCTGGGGCAAGAGG+TGG + chr1_4:53989319-53989338 Msa0170150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53982989 53989972 53982989 ID=Msa0170150;Name=Msa0170150
chr1_4 mRNA 53982989 53989972 53982989 ID=Msa0170150-mRNA-1;Parent=Msa0170150;Name=Msa0170150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=618|1|1|1|0.92|0.86|15|570|464
chr1_4 exon 53982989 53983036 53982989 ID=Msa0170150-mRNA-1:exon:16096;Parent=Msa0170150-mRNA-1
chr1_4 exon 53983057 53983705 53983057 ID=Msa0170150-mRNA-1:exon:16097;Parent=Msa0170150-mRNA-1
chr1_4 exon 53983810 53983850 53983810 ID=Msa0170150-mRNA-1:exon:16098;Parent=Msa0170150-mRNA-1
chr1_4 exon 53984815 53984884 53984815 ID=Msa0170150-mRNA-1:exon:16099;Parent=Msa0170150-mRNA-1
chr1_4 exon 53985041 53985189 53985041 ID=Msa0170150-mRNA-1:exon:16100;Parent=Msa0170150-mRNA-1
chr1_4 exon 53985275 53985370 53985275 ID=Msa0170150-mRNA-1:exon:16101;Parent=Msa0170150-mRNA-1
chr1_4 exon 53987011 53987081 53987011 ID=Msa0170150-mRNA-1:exon:16102;Parent=Msa0170150-mRNA-1
chr1_4 exon 53987638 53987699 53987638 ID=Msa0170150-mRNA-1:exon:16103;Parent=Msa0170150-mRNA-1
chr1_4 exon 53987806 53987869 53987806 ID=Msa0170150-mRNA-1:exon:16104;Parent=Msa0170150-mRNA-1
chr1_4 exon 53987948 53988032 53987948 ID=Msa0170150-mRNA-1:exon:16105;Parent=Msa0170150-mRNA-1
chr1_4 exon 53988171 53988297 53988171 ID=Msa0170150-mRNA-1:exon:16106;Parent=Msa0170150-mRNA-1
chr1_4 exon 53988372 53988445 53988372 ID=Msa0170150-mRNA-1:exon:16107;Parent=Msa0170150-mRNA-1
chr1_4 exon 53988560 53988620 53988560 ID=Msa0170150-mRNA-1:exon:16108;Parent=Msa0170150-mRNA-1
chr1_4 exon 53988885 53989015 53988885 ID=Msa0170150-mRNA-1:exon:16109;Parent=Msa0170150-mRNA-1
chr1_4 exon 53989118 53989972 53989118 ID=Msa0170150-mRNA-1:exon:16110;Parent=Msa0170150-mRNA-1
chr1_4 five_prime_UTR 53982989 53983036 53982989 ID=Msa0170150-mRNA-1:five_prime_utr;Parent=Msa0170150-mRNA-1
chr1_4 five_prime_UTR 53983057 53983626 53983057 ID=Msa0170150-mRNA-1:five_prime_utr;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53983627 53983705 53983627 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53983810 53983850 53983810 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53984815 53984884 53984815 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53985041 53985189 53985041 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53985275 53985370 53985275 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53987011 53987081 53987011 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53987638 53987699 53987638 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53987806 53987869 53987806 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53987948 53988032 53987948 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53988171 53988297 53988171 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53988372 53988445 53988372 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53988560 53988620 53988560 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53988885 53989015 53988885 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 CDS 53989118 53989402 53989118 ID=Msa0170150-mRNA-1:cds;Parent=Msa0170150-mRNA-1
chr1_4 three_prime_UTR 53989403 53989972 53989403 ID=Msa0170150-mRNA-1:three_prime_utr;Parent=Msa0170150-mRNA-1
Gene Sequence

>Msa0170150

ATGATGGATCATGTAATTGGTGGAAAATTCAAGCTCGGAAGGAAAATTGGTGGTGGGTCATTTGGAGAGCTCTACTTGGGTGTTAATGTACAAACTGGAGAGGAAGTTGCTCTTAAATTGGAACCTGTGAAGACCAAACATCCTCAACTTCACTACGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGCCATGGCAATTGACCTCCTTGGACCAAGTCTGGAAGACTTGTTTAACTATTGCAATAGGAAATTCTCTCTAAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGTGGTTTCCTTCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGACGCAAAGCAAATCAGGTATACATAATTGATTACGGCCTTGCAAAAAAGTTCCGAGATCTTCACACACACAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCCCGGTATGCAAGTGTTAATACTCATCTAGGAGTTGAACAAAGCAGAAGAGATGATCTGGAATCACTTGGTTTTGTACTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGTTTGAAAGCTGGCAATAAAAAACAAAAATACGACAGAATAAGTGAAAAGAAGATGCTTACTCCTATAGAGGTTTTGTGCAAGGCACATCCGTTGGAATTTACATCATACTTCCATTACTGCCGATCGTTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTCAAGAGACTCTTTCGTGACCTATTCATCCGAGAAGGCTATCAGTTTGATTATGTGTTTGATTGGACTATATTGAAGTATCCACAAATTGGATCTAGTTCCAGGGCCCGGCCAAGTGGGAAACCAGTCATAAATCCAGGACAATCAGGAGAGAGAGTAGAACGGCCTTCAGGTGGACCAGAGATTCGGGATAGATTCTCGGGTGCAGTTCAGGCATTTGCAAGAAGGAATGGATCTGGCCATGGTGTGCATGGTGATCATTCCAGGCATAGATCTTCAGATGAGCCATCTTCTAAAGACGTGCAAGCTGATTCTGAGAGGCCGCGTAGCTCTTCTCGTCACGGCAGTTCTTCCAAAAGACCTGTCTTATCAAGCAGCCGTCCAAACTCTTCTGGTGAACCAAGTGAAAGCCGCTCTAGCCGATTGCTCTTGAGCAGTAGCAGACTATCTACTACTCAGAGGACTCAACCAGGTCTTGAGTCCAAATCATCATCATTTAATAATCGTGCTTCTGGGGCAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCACTTGGCACTGGAAAAAGGAAATGA
Protein sequence

>Msa0170150

MMDHVIGGKFKLGRKIGGGSFGELYLGVNVQTGEEVALKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLHTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYDRISEKKMLTPIEVLCKAHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINPGQSGERVERPSGGPEIRDRFSGAVQAFARRNGSGHGVHGDHSRHRSSDEPSSKDVQADSERPRSSSRHGSSSKRPVLSSSRPNSSGEPSESRSSRLLLSSSRLSTTQRTQPGLESKSSSFNNRASGARGGRDDTLRSFELLSLGTGKRK*