Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170720 | XP_039683937.1 | 86.131 | 411 | 9 | 1 | 78 | 440 | 375 | 785 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170720 | sp|Q9SWG3|FAR1_ARATH | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.64e-67 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170720 | Q2HSZ7 | 86.683 | 398 | 5 | 1 | 91 | 440 | 318 | 715 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0170720 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170720 | MtrunA17_Chr2g0296781 | 79.624 | 319 | 65 | 0 | 122 | 440 | 42 | 360 | 0.0 | 563 |
| Msa0170720 | MtrunA17_Chr6g0477261 | 87.097 | 248 | 32 | 0 | 193 | 440 | 2 | 249 | 1.99e-162 | 473 |
| Msa0170720 | MtrunA17_Chr1g0196541 | 64.577 | 319 | 113 | 0 | 122 | 440 | 42 | 360 | 3.84e-153 | 451 |
| Msa0170720 | MtrunA17_Chr5g0441581 | 50.943 | 318 | 148 | 1 | 123 | 440 | 79 | 388 | 1.83e-112 | 345 |
| Msa0170720 | MtrunA17_Chr1g0202341 | 38.871 | 319 | 188 | 5 | 125 | 440 | 105 | 419 | 1.08e-74 | 246 |
| Msa0170720 | MtrunA17_Chr2g0291581 | 41.077 | 297 | 165 | 2 | 144 | 440 | 138 | 424 | 1.56e-73 | 243 |
| Msa0170720 | MtrunA17_Chr2g0291591 | 36.027 | 297 | 190 | 0 | 144 | 440 | 131 | 427 | 1.04e-71 | 236 |
| Msa0170720 | MtrunA17_Chr5g0448761 | 37.855 | 317 | 188 | 7 | 131 | 440 | 121 | 435 | 7.10e-69 | 233 |
| Msa0170720 | MtrunA17_Chr2g0329031 | 35.987 | 314 | 184 | 3 | 133 | 440 | 71 | 373 | 5.63e-67 | 227 |
| Msa0170720 | MtrunA17_Chr1g0207551 | 36.577 | 298 | 188 | 1 | 144 | 440 | 103 | 400 | 7.87e-66 | 225 |
| Msa0170720 | MtrunA17_Chr8g0363841 | 37.333 | 300 | 183 | 3 | 144 | 440 | 88 | 385 | 6.75e-62 | 212 |
| Msa0170720 | MtrunA17_Chr3g0080351 | 35.873 | 315 | 178 | 4 | 125 | 438 | 141 | 432 | 3.50e-59 | 207 |
| Msa0170720 | MtrunA17_Chr2g0324011 | 33.000 | 300 | 198 | 3 | 143 | 440 | 80 | 378 | 5.32e-55 | 192 |
| Msa0170720 | MtrunA17_Chr2g0287651 | 32.776 | 299 | 195 | 3 | 144 | 440 | 147 | 441 | 1.97e-52 | 189 |
| Msa0170720 | MtrunA17_Chr5g0440451 | 31.667 | 360 | 206 | 9 | 109 | 440 | 69 | 416 | 5.88e-51 | 185 |
| Msa0170720 | MtrunA17_Chr5g0448511 | 39.904 | 208 | 123 | 2 | 234 | 440 | 1 | 207 | 3.88e-50 | 178 |
| Msa0170720 | MtrunA17_Chr3g0118611 | 41.206 | 199 | 110 | 2 | 246 | 440 | 118 | 313 | 2.18e-48 | 176 |
| Msa0170720 | MtrunA17_Chr1g0203721 | 31.290 | 310 | 203 | 4 | 138 | 440 | 128 | 434 | 1.02e-46 | 172 |
| Msa0170720 | MtrunA17_Chr1g0203051 | 28.931 | 318 | 218 | 5 | 125 | 440 | 132 | 443 | 1.87e-46 | 169 |
| Msa0170720 | MtrunA17_Chr1g0198761 | 31.563 | 339 | 214 | 9 | 107 | 432 | 85 | 418 | 6.09e-45 | 166 |
| Msa0170720 | MtrunA17_Chr2g0287061 | 31.077 | 325 | 185 | 6 | 122 | 440 | 222 | 513 | 1.91e-44 | 165 |
| Msa0170720 | MtrunA17_Chr6g0458391 | 29.450 | 309 | 196 | 5 | 135 | 440 | 287 | 576 | 7.25e-44 | 163 |
| Msa0170720 | MtrunA17_Chr5g0431001 | 30.508 | 354 | 213 | 11 | 104 | 434 | 91 | 434 | 7.48e-43 | 157 |
| Msa0170720 | MtrunA17_Chr1g0164591 | 32.770 | 296 | 179 | 10 | 153 | 440 | 1 | 284 | 1.52e-42 | 152 |
| Msa0170720 | MtrunA17_Chr2g0276841 | 30.211 | 331 | 207 | 9 | 123 | 437 | 119 | 441 | 4.21e-41 | 155 |
| Msa0170720 | MtrunA17_Chr7g0258861 | 35.714 | 210 | 132 | 2 | 143 | 349 | 80 | 289 | 1.76e-40 | 146 |
| Msa0170720 | MtrunA17_Chr3g0082121 | 33.115 | 305 | 182 | 11 | 144 | 440 | 114 | 404 | 4.15e-39 | 149 |
| Msa0170720 | MtrunA17_Chr2g0294841 | 31.502 | 273 | 181 | 5 | 170 | 438 | 150 | 420 | 3.54e-38 | 147 |
| Msa0170720 | MtrunA17_Chr2g0290391 | 24.359 | 312 | 213 | 9 | 142 | 434 | 120 | 427 | 8.16e-25 | 107 |
| Msa0170720 | MtrunA17_Chr6g0451441 | 29.134 | 127 | 88 | 1 | 112 | 238 | 123 | 247 | 7.33e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170720 | AT4G15090.1 | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.72e-68 | 232 |
| Msa0170720 | AT4G15090.5 | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.72e-68 | 232 |
| Msa0170720 | AT4G15090.3 | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.72e-68 | 232 |
| Msa0170720 | AT4G15090.2 | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.72e-68 | 232 |
| Msa0170720 | AT4G15090.4 | 37.333 | 300 | 184 | 3 | 144 | 440 | 122 | 420 | 4.72e-68 | 232 |
| Msa0170720 | AT4G38180.1 | 35.873 | 315 | 193 | 4 | 131 | 440 | 134 | 444 | 1.81e-66 | 227 |
| Msa0170720 | AT1G76320.3 | 35.463 | 313 | 192 | 3 | 131 | 440 | 52 | 357 | 7.75e-60 | 207 |
| Msa0170720 | AT1G76320.2 | 35.463 | 313 | 192 | 3 | 131 | 440 | 52 | 357 | 1.45e-59 | 207 |
| Msa0170720 | AT1G76320.1 | 35.463 | 313 | 192 | 3 | 131 | 440 | 52 | 357 | 1.66e-59 | 207 |
| Msa0170720 | AT1G76320.4 | 35.463 | 313 | 192 | 3 | 131 | 440 | 52 | 357 | 1.66e-59 | 207 |
| Msa0170720 | AT1G52520.1 | 35.786 | 299 | 180 | 4 | 144 | 440 | 152 | 440 | 1.03e-58 | 204 |
| Msa0170720 | AT1G80010.1 | 34.211 | 304 | 189 | 5 | 144 | 438 | 162 | 463 | 1.52e-57 | 202 |
| Msa0170720 | AT3G22170.2 | 33.438 | 317 | 188 | 3 | 125 | 440 | 135 | 429 | 2.44e-57 | 202 |
| Msa0170720 | AT3G22170.1 | 33.438 | 317 | 188 | 3 | 125 | 440 | 135 | 429 | 2.44e-57 | 202 |
| Msa0170720 | AT2G27110.2 | 36.913 | 298 | 170 | 7 | 147 | 440 | 108 | 391 | 9.18e-55 | 195 |
| Msa0170720 | AT2G27110.1 | 36.913 | 298 | 170 | 7 | 147 | 440 | 108 | 391 | 9.18e-55 | 195 |
| Msa0170720 | AT2G27110.3 | 38.843 | 242 | 137 | 4 | 201 | 440 | 14 | 246 | 9.52e-52 | 185 |
| Msa0170720 | AT2G32250.5 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 6.88e-49 | 178 |
| Msa0170720 | AT2G32250.8 | 42.857 | 189 | 107 | 1 | 253 | 440 | 135 | 323 | 8.42e-49 | 178 |
| Msa0170720 | AT2G32250.6 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 9.36e-49 | 178 |
| Msa0170720 | AT2G32250.1 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 9.36e-49 | 178 |
| Msa0170720 | AT2G32250.3 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 9.36e-49 | 178 |
| Msa0170720 | AT2G32250.2 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 9.43e-49 | 178 |
| Msa0170720 | AT2G32250.4 | 42.857 | 189 | 107 | 1 | 253 | 440 | 176 | 364 | 9.43e-49 | 178 |
| Msa0170720 | AT2G32250.7 | 42.857 | 189 | 107 | 1 | 253 | 440 | 135 | 323 | 9.43e-49 | 177 |
| Msa0170720 | AT3G06250.2 | 30.938 | 320 | 189 | 6 | 122 | 440 | 229 | 517 | 2.26e-46 | 171 |
| Msa0170720 | AT3G06250.1 | 30.938 | 320 | 189 | 6 | 122 | 440 | 229 | 517 | 2.26e-46 | 171 |
| Msa0170720 | AT3G06250.3 | 30.938 | 320 | 189 | 6 | 122 | 440 | 229 | 517 | 2.26e-46 | 171 |
| Msa0170720 | AT5G18960.2 | 31.889 | 323 | 185 | 7 | 122 | 440 | 250 | 541 | 3.14e-45 | 168 |
| Msa0170720 | AT5G18960.1 | 31.889 | 323 | 185 | 7 | 122 | 440 | 250 | 541 | 3.14e-45 | 168 |
| Msa0170720 | AT4G19990.1 | 40.865 | 208 | 117 | 4 | 236 | 440 | 107 | 311 | 6.34e-45 | 166 |
| Msa0170720 | AT4G19990.5 | 40.865 | 208 | 117 | 4 | 236 | 440 | 164 | 368 | 7.62e-45 | 166 |
| Msa0170720 | AT4G19990.3 | 40.865 | 208 | 117 | 4 | 236 | 440 | 164 | 368 | 8.13e-45 | 166 |
| Msa0170720 | AT4G19990.4 | 40.865 | 208 | 117 | 4 | 236 | 440 | 164 | 368 | 8.13e-45 | 166 |
| Msa0170720 | AT4G19990.7 | 40.865 | 208 | 117 | 4 | 236 | 440 | 178 | 382 | 9.84e-45 | 166 |
| Msa0170720 | AT4G19990.6 | 40.865 | 208 | 117 | 4 | 236 | 440 | 164 | 368 | 1.05e-44 | 166 |
| Msa0170720 | AT4G19990.2 | 40.865 | 208 | 117 | 4 | 236 | 440 | 164 | 368 | 1.05e-44 | 166 |
| Msa0170720 | AT4G38170.1 | 37.255 | 204 | 116 | 4 | 242 | 440 | 13 | 209 | 7.90e-40 | 150 |
| Msa0170720 | AT1G10240.2 | 29.316 | 307 | 196 | 8 | 144 | 437 | 121 | 419 | 3.26e-36 | 141 |
| Msa0170720 | AT1G10240.1 | 29.316 | 307 | 196 | 8 | 144 | 437 | 121 | 419 | 3.26e-36 | 141 |
| Msa0170720 | AT5G28530.3 | 24.601 | 313 | 205 | 7 | 150 | 434 | 122 | 431 | 4.00e-27 | 114 |
| Msa0170720 | AT5G28530.2 | 24.601 | 313 | 205 | 7 | 150 | 434 | 122 | 431 | 4.00e-27 | 114 |
| Msa0170720 | AT5G28530.1 | 24.601 | 313 | 205 | 7 | 150 | 434 | 122 | 431 | 4.34e-27 | 114 |
| Msa0170720 | AT5G28530.4 | 30.435 | 115 | 73 | 3 | 319 | 429 | 252 | 363 | 3.84e-12 | 68.9 |
| Msa0170720 | AT5G28530.5 | 30.435 | 115 | 73 | 3 | 319 | 429 | 252 | 363 | 4.21e-12 | 68.6 |
Find 75 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCTTGGTCAGTAATTA+TGG | 0.209922 | 1_4:+55036190 | None:intergenic |
| GTCGTTTGCGAAATGTATTC+TGG | 0.220344 | 1_4:-55036442 | Msa0170720:CDS |
| CACCATCGATGGCGAGCTTT+TGG | 0.238537 | 1_4:+55036137 | None:intergenic |
| TTCGAGCATATCTGATTTCA+TGG | 0.264868 | 1_4:-55036018 | Msa0170720:CDS |
| CCTTCTTCATTGCTCTATCT+TGG | 0.275947 | 1_4:+55036177 | None:intergenic |
| CCGTATCCTCATTCGACAAT+AGG | 0.297761 | 1_4:+55036273 | None:intergenic |
| TTTGTGGCATTTAATGAAAA+AGG | 0.306478 | 1_4:-55036114 | Msa0170720:CDS |
| AAGCAGAAATTTCCGATCTA+TGG | 0.310416 | 1_4:-55036645 | Msa0170720:CDS |
| AGGGCTGCTTATGAGTATTT+TGG | 0.315150 | 1_4:-55036404 | Msa0170720:CDS |
| AGCCATACACTGTGCTCTTA+TGG | 0.342605 | 1_4:+55036838 | None:intergenic |
| GGATATGATAATCTTACATT+TGG | 0.343496 | 1_4:-55036608 | Msa0170720:CDS |
| CAACCCTTTGAGATCGTATA+AGG | 0.347621 | 1_4:+55038026 | None:intergenic |
| TGTGCTCTTATGGTAGGATT+TGG | 0.353524 | 1_4:+55036848 | None:intergenic |
| CGTATCCTCATTCGACAATA+GGG | 0.366937 | 1_4:+55036274 | None:intergenic |
| AATATGTCTATGTCTTTAGA+TGG | 0.377645 | 1_4:-55036809 | Msa0170720:CDS |
| ATTTGGACCCTCATACAAAA+AGG | 0.378123 | 1_4:-55036703 | Msa0170720:CDS |
| GTGGAATTGAATGTTGAAAC+AGG | 0.386950 | 1_4:+55037288 | None:intergenic |
| TGGTCAGTAATTATGGCATT+TGG | 0.404502 | 1_4:+55036197 | None:intergenic |
| ATATTTATTTGTTAAATAAG+TGG | 0.416959 | 1_4:+55036361 | None:intergenic |
| TTATGTGATCAACCTCCTCT+TGG | 0.424715 | 1_4:+55037112 | None:intergenic |
| CATGATAATGAATGGTTGTA+AGG | 0.443131 | 1_4:-55035960 | None:intergenic |
| GTTGCTCTTGAGCATAATCA+TGG | 0.447972 | 1_4:-55036767 | Msa0170720:CDS |
| TGGTAGGATTTGGTTTCAAA+AGG | 0.448606 | 1_4:+55036858 | None:intergenic |
| CTCGCCATCGATGGTGTTTG+TGG | 0.452930 | 1_4:-55036130 | Msa0170720:CDS |
| TGATGATTGACTCCAACAAA+AGG | 0.455391 | 1_4:+55036323 | None:intergenic |
| GAAGCAAATATTGTTCAAGC+AGG | 0.462377 | 1_4:-55037066 | Msa0170720:intron |
| AAATTATTCTTACTTGCTTG+TGG | 0.469619 | 1_4:+55037269 | None:intergenic |
| TCTCAAAGGGTTGTGTTTCG+CGG | 0.472073 | 1_4:-55038016 | Msa0170720:intron |
| TTTCCTTATACGATCTCAAA+GGG | 0.488824 | 1_4:-55038029 | Msa0170720:CDS |
| ACTCCAACAAAAGGGGCAAA+AGG | 0.489968 | 1_4:+55036332 | None:intergenic |
| TACCATAAGAGCACAGTGTA+TGG | 0.490683 | 1_4:-55036840 | Msa0170720:CDS |
| TCTGGGTAGATGCGAGATGT+AGG | 0.494755 | 1_4:-55036424 | Msa0170720:CDS |
| TCGTTTGCGAAATGTATTCT+GGG | 0.501285 | 1_4:-55036441 | Msa0170720:CDS |
| TCTATGGTTGTTGAAGCAAA+TGG | 0.501556 | 1_4:-55036629 | Msa0170720:CDS |
| CCTATTGTCGAATGAGGATA+CGG | 0.509576 | 1_4:-55036273 | Msa0170720:CDS |
| GATGATTGACTCCAACAAAA+GGG | 0.511990 | 1_4:+55036324 | None:intergenic |
| CTGGGTAGATGCGAGATGTA+GGG | 0.525010 | 1_4:-55036423 | Msa0170720:CDS |
| AAAGCAAGACGGCTTCCACT+TGG | 0.525234 | 1_4:-55036557 | Msa0170720:CDS |
| ATTTCCTTATACGATCTCAA+AGG | 0.528662 | 1_4:-55038030 | Msa0170720:CDS |
| CGCTGTTGTATTCACCGCCA+CGG | 0.531935 | 1_4:-55037383 | Msa0170720:CDS |
| AGCAATGAAGAAGGCAATTG+AGG | 0.534217 | 1_4:-55036168 | Msa0170720:CDS |
| AGACGGCTTCCACTTGGGAT+AGG | 0.537811 | 1_4:-55036551 | Msa0170720:CDS |
| AAGCAAGACGGCTTCCACTT+GGG | 0.540758 | 1_4:-55036556 | Msa0170720:CDS |
| GGTGAATACAACAGCGGCGA+TGG | 0.541955 | 1_4:+55037390 | None:intergenic |
| AGTAAAGTGATGTTTGAGGA+TGG | 0.543909 | 1_4:+55037319 | None:intergenic |
| TCAAAGTAAAGTGATGTTTG+AGG | 0.547191 | 1_4:+55037315 | None:intergenic |
| TTCCAAAAGCTCGCCATCGA+TGG | 0.547197 | 1_4:-55036139 | Msa0170720:CDS |
| CCAAGATAGAGCAATGAAGA+AGG | 0.549366 | 1_4:-55036177 | Msa0170720:CDS |
| CAGACAACAACGGCGACGAA+AGG | 0.551224 | 1_4:+55037418 | None:intergenic |
| TTGCTTCAACAACCATAGAT+CGG | 0.559940 | 1_4:+55036633 | None:intergenic |
| TTTCTTGGCTGTTCAAAACA+TGG | 0.566689 | 1_4:-55036244 | Msa0170720:CDS |
| TTGCCTTATACGATGTCGAA+GGG | 0.566740 | 1_4:-55038081 | None:intergenic |
| TTTGCCTTATACGATGTCGA+AGG | 0.573490 | 1_4:-55038082 | None:intergenic |
| TACTTCTTCTGTCCAAGAGG+AGG | 0.573867 | 1_4:-55037124 | Msa0170720:CDS |
| TATCTGATTTCATGGAGAAG+TGG | 0.590848 | 1_4:-55036010 | Msa0170720:CDS |
| ATACACTGTGCTCTTATGGT+AGG | 0.596198 | 1_4:+55036842 | None:intergenic |
| TTGTGCCCTATTGTCGAATG+AGG | 0.600198 | 1_4:-55036279 | Msa0170720:CDS |
| TTAGATATTAATGATCAAGC+TGG | 0.603736 | 1_4:-55036677 | Msa0170720:CDS |
| CAACGGCGACGAAAGGACAA+AGG | 0.617082 | 1_4:+55037425 | None:intergenic |
| TTTGTTGGAGTCAATCATCA+CGG | 0.624437 | 1_4:-55036320 | Msa0170720:CDS |
| ATGATTGACTCCAACAAAAG+GGG | 0.626051 | 1_4:+55036325 | None:intergenic |
| ATGATAATGAATGGTTGTAA+GGG | 0.634144 | 1_4:-55035959 | None:intergenic |
| ACATGGTTAGAATGCATGCA+TGG | 0.634260 | 1_4:-55036227 | Msa0170720:CDS |
| TCAGCATCTCCTATCCCAAG+TGG | 0.637487 | 1_4:+55036542 | None:intergenic |
| AATGCCACAAACACCATCGA+TGG | 0.638359 | 1_4:+55036126 | None:intergenic |
| ACGAACTGCATGATAATGAA+TGG | 0.646085 | 1_4:-55035968 | Msa0170720:CDS |
| TAGTTGTGCGGCGAGAACCG+TGG | 0.647045 | 1_4:+55037366 | None:intergenic |
| ATCTACTTCTTCTGTCCAAG+AGG | 0.647824 | 1_4:-55037127 | Msa0170720:CDS |
| GGAATTGAATGTTGAAACAG+GGG | 0.654531 | 1_4:+55037290 | None:intergenic |
| TGGAATTGAATGTTGAAACA+GGG | 0.655246 | 1_4:+55037289 | None:intergenic |
| ATTACATTGACAAAGCAAGA+CGG | 0.657095 | 1_4:-55036568 | Msa0170720:CDS |
| GATATGCAGTTATAGTTGTG+CGG | 0.693838 | 1_4:+55037354 | None:intergenic |
| TTGTGCGGCGAGAACCGTGG+CGG | 0.697644 | 1_4:+55037369 | None:intergenic |
| GATGGTAGAGCAGACAACAA+CGG | 0.709353 | 1_4:+55037408 | None:intergenic |
| CGTGGCGGTGAATACAACAG+CGG | 0.778646 | 1_4:+55037384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTATAATCATATTAAAATT+TGG | - | chr1_4:55036257-55036276 | Msa0170720:CDS | 10.0% |
| !! | ATATAAAATAATCTTGTATA+CGG | + | chr1_4:55036311-55036330 | None:intergenic | 10.0% |
| !!! | ATATTTATTTGTTAAATAAG+TGG | + | chr1_4:55037673-55037692 | None:intergenic | 10.0% |
| !! | CTTATAATCATATTAAAATT+TGG | - | chr1_4:55036257-55036276 | Msa0170720:CDS | 10.0% |
| !! | ATATAAAATAATCTTGTATA+CGG | + | chr1_4:55036311-55036330 | None:intergenic | 10.0% |
| !!! | ATATTTATTTGTTAAATAAG+TGG | + | chr1_4:55037673-55037692 | None:intergenic | 10.0% |
| !!! | AAACACATTTTTTTAGTTTT+GGG | + | chr1_4:55036048-55036067 | None:intergenic | 15.0% |
| !!! | AAAACACATTTTTTTAGTTT+TGG | + | chr1_4:55036049-55036068 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTTTGTTGAAAT+CGG | + | chr1_4:55036162-55036181 | None:intergenic | 15.0% |
| !! | TATAAAATAATCTTGTATAC+GGG | + | chr1_4:55036310-55036329 | None:intergenic | 15.0% |
| !! | ATACTCATTATAATTATATG+TGG | + | chr1_4:55036392-55036411 | None:intergenic | 15.0% |
| !! | CAAAATCATTAAGAATAAAA+AGG | + | chr1_4:55036487-55036506 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACTTTACTCT+AGG | - | chr1_4:55037111-55037130 | Msa0170720:CDS | 15.0% |
| !!! | TAAAATATCTAGATTTTGTT+GGG | + | chr1_4:55037296-55037315 | None:intergenic | 15.0% |
| !!! | AAACACATTTTTTTAGTTTT+GGG | + | chr1_4:55036048-55036067 | None:intergenic | 15.0% |
| !!! | AAAACACATTTTTTTAGTTT+TGG | + | chr1_4:55036049-55036068 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTTTGTTGAAAT+CGG | + | chr1_4:55036162-55036181 | None:intergenic | 15.0% |
| !! | TATAAAATAATCTTGTATAC+GGG | + | chr1_4:55036310-55036329 | None:intergenic | 15.0% |
| !! | ATACTCATTATAATTATATG+TGG | + | chr1_4:55036392-55036411 | None:intergenic | 15.0% |
| !! | CAAAATCATTAAGAATAAAA+AGG | + | chr1_4:55036487-55036506 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACTTTACTCT+AGG | - | chr1_4:55037111-55037130 | Msa0170720:CDS | 15.0% |
| !!! | TAAAATATCTAGATTTTGTT+GGG | + | chr1_4:55037296-55037315 | None:intergenic | 15.0% |
| !! | ATAAAATAATCTTGTATACG+GGG | + | chr1_4:55036309-55036328 | None:intergenic | 20.0% |
| !! | TAATCAACTAAATTAACAAG+TGG | + | chr1_4:55036838-55036857 | None:intergenic | 20.0% |
| !! | AAACAATTCAAAAAATGCAA+AGG | - | chr1_4:55037084-55037103 | Msa0170720:CDS | 20.0% |
| !!! | CTAAAATATCTAGATTTTGT+TGG | + | chr1_4:55037297-55037316 | None:intergenic | 20.0% |
| !!! | TTTTAGATGCAATAAGAATT+TGG | - | chr1_4:55037311-55037330 | Msa0170720:CDS | 20.0% |
| !!! | TAGTCAATTTTATTATGTGA+TGG | - | chr1_4:55037551-55037570 | Msa0170720:intron | 20.0% |
| !! | ATAAAATAATCTTGTATACG+GGG | + | chr1_4:55036309-55036328 | None:intergenic | 20.0% |
| !! | TAATCAACTAAATTAACAAG+TGG | + | chr1_4:55036838-55036857 | None:intergenic | 20.0% |
| !! | AAACAATTCAAAAAATGCAA+AGG | - | chr1_4:55037084-55037103 | Msa0170720:CDS | 20.0% |
| !!! | CTAAAATATCTAGATTTTGT+TGG | + | chr1_4:55037297-55037316 | None:intergenic | 20.0% |
| !!! | TTTTAGATGCAATAAGAATT+TGG | - | chr1_4:55037311-55037330 | Msa0170720:CDS | 20.0% |
| !!! | TAGTCAATTTTATTATGTGA+TGG | - | chr1_4:55037551-55037570 | Msa0170720:intron | 20.0% |
| ! | CACCTAAAAACATAAACTTA+CGG | - | chr1_4:55036207-55036226 | Msa0170720:CDS | 25.0% |
| ! | ACCTAAAAACATAAACTTAC+GGG | - | chr1_4:55036208-55036227 | Msa0170720:CDS | 25.0% |
| ! | ATTATATGTGGCAGAATATA+CGG | + | chr1_4:55036380-55036399 | None:intergenic | 25.0% |
| ! | AAATTATTCTTACTTGCTTG+TGG | + | chr1_4:55036765-55036784 | None:intergenic | 25.0% |
| ! | ACAAGCAAGTAAGAATAATT+TGG | - | chr1_4:55036764-55036783 | Msa0170720:CDS | 25.0% |
| !! | TGTAAAATTTTCTGCATTAG+TGG | - | chr1_4:55036874-55036893 | Msa0170720:CDS | 25.0% |
| ! | AATTCAAAAAATGCAAAGGA+TGG | - | chr1_4:55037088-55037107 | Msa0170720:CDS | 25.0% |
| ! | AATATGTCTATGTCTTTAGA+TGG | - | chr1_4:55037222-55037241 | Msa0170720:intron | 25.0% |
| ! | TTAGATATTAATGATCAAGC+TGG | - | chr1_4:55037354-55037373 | Msa0170720:CDS | 25.0% |
| ! | GGATATGATAATCTTACATT+TGG | - | chr1_4:55037423-55037442 | Msa0170720:CDS | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | - | chr1_4:55037557-55037576 | Msa0170720:intron | 25.0% |
| ! | TTTGTGGCATTTAATGAAAA+AGG | - | chr1_4:55037917-55037936 | Msa0170720:intron | 25.0% |
| ! | CACCTAAAAACATAAACTTA+CGG | - | chr1_4:55036207-55036226 | Msa0170720:CDS | 25.0% |
| ! | ACCTAAAAACATAAACTTAC+GGG | - | chr1_4:55036208-55036227 | Msa0170720:CDS | 25.0% |
| ! | ATTATATGTGGCAGAATATA+CGG | + | chr1_4:55036380-55036399 | None:intergenic | 25.0% |
| ! | AAATTATTCTTACTTGCTTG+TGG | + | chr1_4:55036765-55036784 | None:intergenic | 25.0% |
| ! | ACAAGCAAGTAAGAATAATT+TGG | - | chr1_4:55036764-55036783 | Msa0170720:CDS | 25.0% |
| !! | TGTAAAATTTTCTGCATTAG+TGG | - | chr1_4:55036874-55036893 | Msa0170720:CDS | 25.0% |
| ! | AATTCAAAAAATGCAAAGGA+TGG | - | chr1_4:55037088-55037107 | Msa0170720:CDS | 25.0% |
| ! | AATATGTCTATGTCTTTAGA+TGG | - | chr1_4:55037222-55037241 | Msa0170720:intron | 25.0% |
| ! | TTAGATATTAATGATCAAGC+TGG | - | chr1_4:55037354-55037373 | Msa0170720:CDS | 25.0% |
| ! | GGATATGATAATCTTACATT+TGG | - | chr1_4:55037423-55037442 | Msa0170720:CDS | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | - | chr1_4:55037557-55037576 | Msa0170720:intron | 25.0% |
| ! | TTTGTGGCATTTAATGAAAA+AGG | - | chr1_4:55037917-55037936 | Msa0170720:intron | 25.0% |
| ATTTCCTTATACGATCTCAA+AGG | - | chr1_4:55036001-55036020 | Msa0170720:CDS | 30.0% | |
| TTTCCTTATACGATCTCAAA+GGG | - | chr1_4:55036002-55036021 | Msa0170720:CDS | 30.0% | |
| GTGTCAAAATCATGTTAACT+CGG | + | chr1_4:55036190-55036209 | None:intergenic | 30.0% | |
| ! | ACCCGTAAGTTTATGTTTTT+AGG | + | chr1_4:55036212-55036231 | None:intergenic | 30.0% |
| TTTGTGCACAACATTTATGA+AGG | + | chr1_4:55036343-55036362 | None:intergenic | 30.0% | |
| TTATATGTGGCAGAATATAC+GGG | + | chr1_4:55036379-55036398 | None:intergenic | 30.0% | |
| TCAAAGTAAAGTGATGTTTG+AGG | + | chr1_4:55036719-55036738 | None:intergenic | 30.0% | |
| TGGAATTGAATGTTGAAACA+GGG | + | chr1_4:55036745-55036764 | None:intergenic | 30.0% | |
| ! | ATTTTCTGCATTAGTGGAAA+CGG | - | chr1_4:55036880-55036899 | Msa0170720:CDS | 30.0% |
| ATTACATTGACAAAGCAAGA+CGG | - | chr1_4:55037463-55037482 | Msa0170720:intron | 30.0% | |
| TCTATCTTGGTCAGTAATTA+TGG | + | chr1_4:55037844-55037863 | None:intergenic | 30.0% | |
| GCATTTAATGAAAAAGGTTC+CGG | - | chr1_4:55037923-55037942 | Msa0170720:intron | 30.0% | |
| ATTTCCTTATACGATCTCAA+AGG | - | chr1_4:55036001-55036020 | Msa0170720:CDS | 30.0% | |
| TTTCCTTATACGATCTCAAA+GGG | - | chr1_4:55036002-55036021 | Msa0170720:CDS | 30.0% | |
| GTGTCAAAATCATGTTAACT+CGG | + | chr1_4:55036190-55036209 | None:intergenic | 30.0% | |
| ! | ACCCGTAAGTTTATGTTTTT+AGG | + | chr1_4:55036212-55036231 | None:intergenic | 30.0% |
| TTTGTGCACAACATTTATGA+AGG | + | chr1_4:55036343-55036362 | None:intergenic | 30.0% | |
| TTATATGTGGCAGAATATAC+GGG | + | chr1_4:55036379-55036398 | None:intergenic | 30.0% | |
| TCAAAGTAAAGTGATGTTTG+AGG | + | chr1_4:55036719-55036738 | None:intergenic | 30.0% | |
| TGGAATTGAATGTTGAAACA+GGG | + | chr1_4:55036745-55036764 | None:intergenic | 30.0% | |
| ! | ATTTTCTGCATTAGTGGAAA+CGG | - | chr1_4:55036880-55036899 | Msa0170720:CDS | 30.0% |
| ATTACATTGACAAAGCAAGA+CGG | - | chr1_4:55037463-55037482 | Msa0170720:intron | 30.0% | |
| TCTATCTTGGTCAGTAATTA+TGG | + | chr1_4:55037844-55037863 | None:intergenic | 30.0% | |
| GCATTTAATGAAAAAGGTTC+CGG | - | chr1_4:55037923-55037942 | Msa0170720:intron | 30.0% | |
| GTAAAATCGTCAGAGTTTAC+GGG | + | chr1_4:55036087-55036106 | None:intergenic | 35.0% | |
| GGTAAAATCGTCAGAGTTTA+CGG | + | chr1_4:55036088-55036107 | None:intergenic | 35.0% | |
| GTAGTGAACTAGGTAAACTT+GGG | + | chr1_4:55036109-55036128 | None:intergenic | 35.0% | |
| TCAAAATCATGTTAACTCGG+AGG | + | chr1_4:55036187-55036206 | None:intergenic | 35.0% | |
| ACGGGGATGATATGATAATT+TGG | + | chr1_4:55036292-55036311 | None:intergenic | 35.0% | |
| TATATGTGGCAGAATATACG+GGG | + | chr1_4:55036378-55036397 | None:intergenic | 35.0% | |
| TGGTGAGATCAATCAATTAG+CGG | + | chr1_4:55036573-55036592 | None:intergenic | 35.0% | |
| ACAAAGGTCTGTAGAATTGA+TGG | + | chr1_4:55036593-55036612 | None:intergenic | 35.0% | |
| GATATGCAGTTATAGTTGTG+CGG | + | chr1_4:55036680-55036699 | None:intergenic | 35.0% | |
| AGTAAAGTGATGTTTGAGGA+TGG | + | chr1_4:55036715-55036734 | None:intergenic | 35.0% | |
| GGAATTGAATGTTGAAACAG+GGG | + | chr1_4:55036744-55036763 | None:intergenic | 35.0% | |
| GTGGAATTGAATGTTGAAAC+AGG | + | chr1_4:55036746-55036765 | None:intergenic | 35.0% | |
| ! | TTTTCTGCATTAGTGGAAAC+GGG | - | chr1_4:55036881-55036900 | Msa0170720:CDS | 35.0% |
| GAAGCAAATATTGTTCAAGC+AGG | - | chr1_4:55036965-55036984 | Msa0170720:intron | 35.0% | |
| AAATATTGTTCAAGCAGGTG+AGG | - | chr1_4:55036970-55036989 | Msa0170720:intron | 35.0% | |
| AGCACAGCTCTTGTAATATT+TGG | + | chr1_4:55037038-55037057 | None:intergenic | 35.0% | |
| ! | TGGTAGGATTTGGTTTCAAA+AGG | + | chr1_4:55037176-55037195 | None:intergenic | 35.0% |
| ATTTGGACCCTCATACAAAA+AGG | - | chr1_4:55037328-55037347 | Msa0170720:CDS | 35.0% | |
| ! | CTAACCTCCTTTTTGTATGA+GGG | + | chr1_4:55037338-55037357 | None:intergenic | 35.0% |
| ! | TCTAACCTCCTTTTTGTATG+AGG | + | chr1_4:55037339-55037358 | None:intergenic | 35.0% |
| AAGCAGAAATTTCCGATCTA+TGG | - | chr1_4:55037386-55037405 | Msa0170720:CDS | 35.0% | |
| TTGCTTCAACAACCATAGAT+CGG | + | chr1_4:55037401-55037420 | None:intergenic | 35.0% | |
| TCTATGGTTGTTGAAGCAAA+TGG | - | chr1_4:55037402-55037421 | Msa0170720:CDS | 35.0% | |
| TCGTTTGCGAAATGTATTCT+GGG | - | chr1_4:55037590-55037609 | Msa0170720:intron | 35.0% | |
| ! | ATGATTGACTCCAACAAAAG+GGG | + | chr1_4:55037709-55037728 | None:intergenic | 35.0% |
| ! | GATGATTGACTCCAACAAAA+GGG | + | chr1_4:55037710-55037729 | None:intergenic | 35.0% |
| ! | TGATGATTGACTCCAACAAA+AGG | + | chr1_4:55037711-55037730 | None:intergenic | 35.0% |
| TTTGTTGGAGTCAATCATCA+CGG | - | chr1_4:55037711-55037730 | Msa0170720:intron | 35.0% | |
| !! | TGTTTTGAACAGCCAAGAAA+AGG | + | chr1_4:55037787-55037806 | None:intergenic | 35.0% |
| TTTCTTGGCTGTTCAAAACA+TGG | - | chr1_4:55037787-55037806 | Msa0170720:intron | 35.0% | |
| TGGTCAGTAATTATGGCATT+TGG | + | chr1_4:55037837-55037856 | None:intergenic | 35.0% | |
| AAAAAGGTTCCGGAAAAGTT+GGG | - | chr1_4:55037933-55037952 | Msa0170720:intron | 35.0% | |
| TTCGAGCATATCTGATTTCA+TGG | - | chr1_4:55038013-55038032 | Msa0170720:intron | 35.0% | |
| TATCTGATTTCATGGAGAAG+TGG | - | chr1_4:55038021-55038040 | Msa0170720:CDS | 35.0% | |
| ! | ACGAACTGCATGATAATGAA+TGG | - | chr1_4:55038063-55038082 | Msa0170720:CDS | 35.0% |
| GTAAAATCGTCAGAGTTTAC+GGG | + | chr1_4:55036087-55036106 | None:intergenic | 35.0% | |
| GGTAAAATCGTCAGAGTTTA+CGG | + | chr1_4:55036088-55036107 | None:intergenic | 35.0% | |
| GTAGTGAACTAGGTAAACTT+GGG | + | chr1_4:55036109-55036128 | None:intergenic | 35.0% | |
| TCAAAATCATGTTAACTCGG+AGG | + | chr1_4:55036187-55036206 | None:intergenic | 35.0% | |
| ACGGGGATGATATGATAATT+TGG | + | chr1_4:55036292-55036311 | None:intergenic | 35.0% | |
| TATATGTGGCAGAATATACG+GGG | + | chr1_4:55036378-55036397 | None:intergenic | 35.0% | |
| TGGTGAGATCAATCAATTAG+CGG | + | chr1_4:55036573-55036592 | None:intergenic | 35.0% | |
| ACAAAGGTCTGTAGAATTGA+TGG | + | chr1_4:55036593-55036612 | None:intergenic | 35.0% | |
| GATATGCAGTTATAGTTGTG+CGG | + | chr1_4:55036680-55036699 | None:intergenic | 35.0% | |
| AGTAAAGTGATGTTTGAGGA+TGG | + | chr1_4:55036715-55036734 | None:intergenic | 35.0% | |
| GGAATTGAATGTTGAAACAG+GGG | + | chr1_4:55036744-55036763 | None:intergenic | 35.0% | |
| GTGGAATTGAATGTTGAAAC+AGG | + | chr1_4:55036746-55036765 | None:intergenic | 35.0% | |
| ! | TTTTCTGCATTAGTGGAAAC+GGG | - | chr1_4:55036881-55036900 | Msa0170720:CDS | 35.0% |
| GAAGCAAATATTGTTCAAGC+AGG | - | chr1_4:55036965-55036984 | Msa0170720:intron | 35.0% | |
| AAATATTGTTCAAGCAGGTG+AGG | - | chr1_4:55036970-55036989 | Msa0170720:intron | 35.0% | |
| AGCACAGCTCTTGTAATATT+TGG | + | chr1_4:55037038-55037057 | None:intergenic | 35.0% | |
| ! | TGGTAGGATTTGGTTTCAAA+AGG | + | chr1_4:55037176-55037195 | None:intergenic | 35.0% |
| ATTTGGACCCTCATACAAAA+AGG | - | chr1_4:55037328-55037347 | Msa0170720:CDS | 35.0% | |
| ! | CTAACCTCCTTTTTGTATGA+GGG | + | chr1_4:55037338-55037357 | None:intergenic | 35.0% |
| ! | TCTAACCTCCTTTTTGTATG+AGG | + | chr1_4:55037339-55037358 | None:intergenic | 35.0% |
| AAGCAGAAATTTCCGATCTA+TGG | - | chr1_4:55037386-55037405 | Msa0170720:CDS | 35.0% | |
| TTGCTTCAACAACCATAGAT+CGG | + | chr1_4:55037401-55037420 | None:intergenic | 35.0% | |
| TCTATGGTTGTTGAAGCAAA+TGG | - | chr1_4:55037402-55037421 | Msa0170720:CDS | 35.0% | |
| TCGTTTGCGAAATGTATTCT+GGG | - | chr1_4:55037590-55037609 | Msa0170720:intron | 35.0% | |
| ! | ATGATTGACTCCAACAAAAG+GGG | + | chr1_4:55037709-55037728 | None:intergenic | 35.0% |
| ! | GATGATTGACTCCAACAAAA+GGG | + | chr1_4:55037710-55037729 | None:intergenic | 35.0% |
| ! | TGATGATTGACTCCAACAAA+AGG | + | chr1_4:55037711-55037730 | None:intergenic | 35.0% |
| TTTGTTGGAGTCAATCATCA+CGG | - | chr1_4:55037711-55037730 | Msa0170720:intron | 35.0% | |
| !! | TGTTTTGAACAGCCAAGAAA+AGG | + | chr1_4:55037787-55037806 | None:intergenic | 35.0% |
| TTTCTTGGCTGTTCAAAACA+TGG | - | chr1_4:55037787-55037806 | Msa0170720:intron | 35.0% | |
| TGGTCAGTAATTATGGCATT+TGG | + | chr1_4:55037837-55037856 | None:intergenic | 35.0% | |
| AAAAAGGTTCCGGAAAAGTT+GGG | - | chr1_4:55037933-55037952 | Msa0170720:intron | 35.0% | |
| TTCGAGCATATCTGATTTCA+TGG | - | chr1_4:55038013-55038032 | Msa0170720:intron | 35.0% | |
| TATCTGATTTCATGGAGAAG+TGG | - | chr1_4:55038021-55038040 | Msa0170720:CDS | 35.0% | |
| ! | ACGAACTGCATGATAATGAA+TGG | - | chr1_4:55038063-55038082 | Msa0170720:CDS | 35.0% |
| !! | CAACCCTTTGAGATCGTATA+AGG | + | chr1_4:55036008-55036027 | None:intergenic | 40.0% |
| CGTAGTGAACTAGGTAAACT+TGG | + | chr1_4:55036110-55036129 | None:intergenic | 40.0% | |
| GAGTTAACACGTAGTGAACT+AGG | + | chr1_4:55036119-55036138 | None:intergenic | 40.0% | |
| TGAGATCAATCAATTAGCGG+CGG | + | chr1_4:55036570-55036589 | None:intergenic | 40.0% | |
| ATCTACTTCTTCTGTCCAAG+AGG | - | chr1_4:55036904-55036923 | Msa0170720:intron | 40.0% | |
| TTATGTGATCAACCTCCTCT+TGG | + | chr1_4:55036922-55036941 | None:intergenic | 40.0% | |
| CTAAATGTCATCCCAATCCT+AGG | + | chr1_4:55036998-55037017 | None:intergenic | 40.0% | |
| AAGAGCTGTGCTAGATGTAT+GGG | - | chr1_4:55037046-55037065 | Msa0170720:intron | 40.0% | |
| ! | TGTGCTAGATGTATGGGTTT+TGG | - | chr1_4:55037052-55037071 | Msa0170720:intron | 40.0% |
| TGTGCTCTTATGGTAGGATT+TGG | + | chr1_4:55037186-55037205 | None:intergenic | 40.0% | |
| ATACACTGTGCTCTTATGGT+AGG | + | chr1_4:55037192-55037211 | None:intergenic | 40.0% | |
| ! | TACCATAAGAGCACAGTGTA+TGG | - | chr1_4:55037191-55037210 | Msa0170720:intron | 40.0% |
| GTTGCTCTTGAGCATAATCA+TGG | - | chr1_4:55037264-55037283 | Msa0170720:intron | 40.0% | |
| GTCGTTTGCGAAATGTATTC+TGG | - | chr1_4:55037589-55037608 | Msa0170720:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | - | chr1_4:55037627-55037646 | Msa0170720:intron | 40.0% |
| !!! | CACGGTCAATCAGTTTTGTT+AGG | - | chr1_4:55037729-55037748 | Msa0170720:intron | 40.0% |
| CGTATCCTCATTCGACAATA+GGG | + | chr1_4:55037760-55037779 | None:intergenic | 40.0% | |
| CCTATTGTCGAATGAGGATA+CGG | - | chr1_4:55037758-55037777 | Msa0170720:intron | 40.0% | |
| ! | AGGATACGGAAACCTTTTCT+TGG | - | chr1_4:55037772-55037791 | Msa0170720:intron | 40.0% |
| ACATGGTTAGAATGCATGCA+TGG | - | chr1_4:55037804-55037823 | Msa0170720:intron | 40.0% | |
| CCTTCTTCATTGCTCTATCT+TGG | + | chr1_4:55037857-55037876 | None:intergenic | 40.0% | |
| CCAAGATAGAGCAATGAAGA+AGG | - | chr1_4:55037854-55037873 | Msa0170720:intron | 40.0% | |
| AGCAATGAAGAAGGCAATTG+AGG | - | chr1_4:55037863-55037882 | Msa0170720:intron | 40.0% | |
| GAAAAAGGTTCCGGAAAAGT+TGG | - | chr1_4:55037932-55037951 | Msa0170720:intron | 40.0% | |
| ! | GAATGACTACCCAACTTTTC+CGG | + | chr1_4:55037945-55037964 | None:intergenic | 40.0% |
| !! | CAACCCTTTGAGATCGTATA+AGG | + | chr1_4:55036008-55036027 | None:intergenic | 40.0% |
| CGTAGTGAACTAGGTAAACT+TGG | + | chr1_4:55036110-55036129 | None:intergenic | 40.0% | |
| GAGTTAACACGTAGTGAACT+AGG | + | chr1_4:55036119-55036138 | None:intergenic | 40.0% | |
| TGAGATCAATCAATTAGCGG+CGG | + | chr1_4:55036570-55036589 | None:intergenic | 40.0% | |
| ATCTACTTCTTCTGTCCAAG+AGG | - | chr1_4:55036904-55036923 | Msa0170720:intron | 40.0% | |
| TTATGTGATCAACCTCCTCT+TGG | + | chr1_4:55036922-55036941 | None:intergenic | 40.0% | |
| CTAAATGTCATCCCAATCCT+AGG | + | chr1_4:55036998-55037017 | None:intergenic | 40.0% | |
| AAGAGCTGTGCTAGATGTAT+GGG | - | chr1_4:55037046-55037065 | Msa0170720:intron | 40.0% | |
| ! | TGTGCTAGATGTATGGGTTT+TGG | - | chr1_4:55037052-55037071 | Msa0170720:intron | 40.0% |
| TGTGCTCTTATGGTAGGATT+TGG | + | chr1_4:55037186-55037205 | None:intergenic | 40.0% | |
| ATACACTGTGCTCTTATGGT+AGG | + | chr1_4:55037192-55037211 | None:intergenic | 40.0% | |
| ! | TACCATAAGAGCACAGTGTA+TGG | - | chr1_4:55037191-55037210 | Msa0170720:intron | 40.0% |
| GTTGCTCTTGAGCATAATCA+TGG | - | chr1_4:55037264-55037283 | Msa0170720:intron | 40.0% | |
| GTCGTTTGCGAAATGTATTC+TGG | - | chr1_4:55037589-55037608 | Msa0170720:intron | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | - | chr1_4:55037627-55037646 | Msa0170720:intron | 40.0% |
| !!! | CACGGTCAATCAGTTTTGTT+AGG | - | chr1_4:55037729-55037748 | Msa0170720:intron | 40.0% |
| CGTATCCTCATTCGACAATA+GGG | + | chr1_4:55037760-55037779 | None:intergenic | 40.0% | |
| CCTATTGTCGAATGAGGATA+CGG | - | chr1_4:55037758-55037777 | Msa0170720:intron | 40.0% | |
| ! | AGGATACGGAAACCTTTTCT+TGG | - | chr1_4:55037772-55037791 | Msa0170720:intron | 40.0% |
| ACATGGTTAGAATGCATGCA+TGG | - | chr1_4:55037804-55037823 | Msa0170720:intron | 40.0% | |
| CCTTCTTCATTGCTCTATCT+TGG | + | chr1_4:55037857-55037876 | None:intergenic | 40.0% | |
| CCAAGATAGAGCAATGAAGA+AGG | - | chr1_4:55037854-55037873 | Msa0170720:intron | 40.0% | |
| AGCAATGAAGAAGGCAATTG+AGG | - | chr1_4:55037863-55037882 | Msa0170720:intron | 40.0% | |
| GAAAAAGGTTCCGGAAAAGT+TGG | - | chr1_4:55037932-55037951 | Msa0170720:intron | 40.0% | |
| ! | GAATGACTACCCAACTTTTC+CGG | + | chr1_4:55037945-55037964 | None:intergenic | 40.0% |
| TCTCAAAGGGTTGTGTTTCG+CGG | - | chr1_4:55036015-55036034 | Msa0170720:CDS | 45.0% | |
| GATGGTAGAGCAGACAACAA+CGG | + | chr1_4:55036626-55036645 | None:intergenic | 45.0% | |
| TACTTCTTCTGTCCAAGAGG+AGG | - | chr1_4:55036907-55036926 | Msa0170720:intron | 45.0% | |
| CAAGAGCTGTGCTAGATGTA+TGG | - | chr1_4:55037045-55037064 | Msa0170720:intron | 45.0% | |
| AGCCATACACTGTGCTCTTA+TGG | + | chr1_4:55037196-55037215 | None:intergenic | 45.0% | |
| TGGACCCTCATACAAAAAGG+AGG | - | chr1_4:55037331-55037350 | Msa0170720:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr1_4:55037696-55037715 | Msa0170720:intron | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr1_4:55037702-55037721 | None:intergenic | 45.0% | |
| TTGTGCCCTATTGTCGAATG+AGG | - | chr1_4:55037752-55037771 | Msa0170720:intron | 45.0% | |
| CCGTATCCTCATTCGACAAT+AGG | + | chr1_4:55037761-55037780 | None:intergenic | 45.0% | |
| AATGCCACAAACACCATCGA+TGG | + | chr1_4:55037908-55037927 | None:intergenic | 45.0% | |
| TCTCAAAGGGTTGTGTTTCG+CGG | - | chr1_4:55036015-55036034 | Msa0170720:CDS | 45.0% | |
| GATGGTAGAGCAGACAACAA+CGG | + | chr1_4:55036626-55036645 | None:intergenic | 45.0% | |
| TACTTCTTCTGTCCAAGAGG+AGG | - | chr1_4:55036907-55036926 | Msa0170720:intron | 45.0% | |
| CAAGAGCTGTGCTAGATGTA+TGG | - | chr1_4:55037045-55037064 | Msa0170720:intron | 45.0% | |
| AGCCATACACTGTGCTCTTA+TGG | + | chr1_4:55037196-55037215 | None:intergenic | 45.0% | |
| TGGACCCTCATACAAAAAGG+AGG | - | chr1_4:55037331-55037350 | Msa0170720:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr1_4:55037696-55037715 | Msa0170720:intron | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr1_4:55037702-55037721 | None:intergenic | 45.0% | |
| TTGTGCCCTATTGTCGAATG+AGG | - | chr1_4:55037752-55037771 | Msa0170720:intron | 45.0% | |
| CCGTATCCTCATTCGACAAT+AGG | + | chr1_4:55037761-55037780 | None:intergenic | 45.0% | |
| AATGCCACAAACACCATCGA+TGG | + | chr1_4:55037908-55037927 | None:intergenic | 45.0% | |
| GCATTTGGCGCTGTAAACGT+GGG | + | chr1_4:55036540-55036559 | None:intergenic | 50.0% | |
| TGCATTTGGCGCTGTAAACG+TGG | + | chr1_4:55036541-55036560 | None:intergenic | 50.0% | |
| AGCGGCGGTTAAACTGCATT+TGG | + | chr1_4:55036555-55036574 | None:intergenic | 50.0% | |
| TTCAAGCAGGTGAGGAACCT+AGG | - | chr1_4:55036978-55036997 | Msa0170720:intron | 50.0% | |
| CAGGTGAGGAACCTAGGATT+GGG | - | chr1_4:55036984-55037003 | Msa0170720:intron | 50.0% | |
| AAAGCAAGACGGCTTCCACT+TGG | - | chr1_4:55037474-55037493 | Msa0170720:intron | 50.0% | |
| AAGCAAGACGGCTTCCACTT+GGG | - | chr1_4:55037475-55037494 | Msa0170720:intron | 50.0% | |
| TCAGCATCTCCTATCCCAAG+TGG | + | chr1_4:55037492-55037511 | None:intergenic | 50.0% | |
| TCTGGGTAGATGCGAGATGT+AGG | - | chr1_4:55037607-55037626 | Msa0170720:intron | 50.0% | |
| CTGGGTAGATGCGAGATGTA+GGG | - | chr1_4:55037608-55037627 | Msa0170720:intron | 50.0% | |
| TTCCAAAAGCTCGCCATCGA+TGG | - | chr1_4:55037892-55037911 | Msa0170720:intron | 50.0% | |
| GCATTTGGCGCTGTAAACGT+GGG | + | chr1_4:55036540-55036559 | None:intergenic | 50.0% | |
| TGCATTTGGCGCTGTAAACG+TGG | + | chr1_4:55036541-55036560 | None:intergenic | 50.0% | |
| AGCGGCGGTTAAACTGCATT+TGG | + | chr1_4:55036555-55036574 | None:intergenic | 50.0% | |
| TTCAAGCAGGTGAGGAACCT+AGG | - | chr1_4:55036978-55036997 | Msa0170720:intron | 50.0% | |
| CAGGTGAGGAACCTAGGATT+GGG | - | chr1_4:55036984-55037003 | Msa0170720:intron | 50.0% | |
| AAAGCAAGACGGCTTCCACT+TGG | - | chr1_4:55037474-55037493 | Msa0170720:intron | 50.0% | |
| AAGCAAGACGGCTTCCACTT+GGG | - | chr1_4:55037475-55037494 | Msa0170720:intron | 50.0% | |
| TCAGCATCTCCTATCCCAAG+TGG | + | chr1_4:55037492-55037511 | None:intergenic | 50.0% | |
| TCTGGGTAGATGCGAGATGT+AGG | - | chr1_4:55037607-55037626 | Msa0170720:intron | 50.0% | |
| CTGGGTAGATGCGAGATGTA+GGG | - | chr1_4:55037608-55037627 | Msa0170720:intron | 50.0% | |
| TTCCAAAAGCTCGCCATCGA+TGG | - | chr1_4:55037892-55037911 | Msa0170720:intron | 50.0% | |
| CAACGGCGACGAAAGGACAA+AGG | + | chr1_4:55036609-55036628 | None:intergenic | 55.0% | |
| CAGACAACAACGGCGACGAA+AGG | + | chr1_4:55036616-55036635 | None:intergenic | 55.0% | |
| GGTGAATACAACAGCGGCGA+TGG | + | chr1_4:55036644-55036663 | None:intergenic | 55.0% | |
| CGTGGCGGTGAATACAACAG+CGG | + | chr1_4:55036650-55036669 | None:intergenic | 55.0% | |
| CGCTGTTGTATTCACCGCCA+CGG | - | chr1_4:55036648-55036667 | Msa0170720:CDS | 55.0% | |
| GCAGGTGAGGAACCTAGGAT+TGG | - | chr1_4:55036983-55037002 | Msa0170720:intron | 55.0% | |
| AGACGGCTTCCACTTGGGAT+AGG | - | chr1_4:55037480-55037499 | Msa0170720:intron | 55.0% | |
| ! | CACCATCGATGGCGAGCTTT+TGG | + | chr1_4:55037897-55037916 | None:intergenic | 55.0% |
| CTCGCCATCGATGGTGTTTG+TGG | - | chr1_4:55037901-55037920 | Msa0170720:intron | 55.0% | |
| CAACGGCGACGAAAGGACAA+AGG | + | chr1_4:55036609-55036628 | None:intergenic | 55.0% | |
| CAGACAACAACGGCGACGAA+AGG | + | chr1_4:55036616-55036635 | None:intergenic | 55.0% | |
| GGTGAATACAACAGCGGCGA+TGG | + | chr1_4:55036644-55036663 | None:intergenic | 55.0% | |
| CGTGGCGGTGAATACAACAG+CGG | + | chr1_4:55036650-55036669 | None:intergenic | 55.0% | |
| CGCTGTTGTATTCACCGCCA+CGG | - | chr1_4:55036648-55036667 | Msa0170720:CDS | 55.0% | |
| GCAGGTGAGGAACCTAGGAT+TGG | - | chr1_4:55036983-55037002 | Msa0170720:intron | 55.0% | |
| AGACGGCTTCCACTTGGGAT+AGG | - | chr1_4:55037480-55037499 | Msa0170720:intron | 55.0% | |
| ! | CACCATCGATGGCGAGCTTT+TGG | + | chr1_4:55037897-55037916 | None:intergenic | 55.0% |
| CTCGCCATCGATGGTGTTTG+TGG | - | chr1_4:55037901-55037920 | Msa0170720:intron | 55.0% | |
| TAGTTGTGCGGCGAGAACCG+TGG | + | chr1_4:55036668-55036687 | None:intergenic | 60.0% | |
| TAGTTGTGCGGCGAGAACCG+TGG | + | chr1_4:55036668-55036687 | None:intergenic | 60.0% | |
| TTGTGCGGCGAGAACCGTGG+CGG | + | chr1_4:55036665-55036684 | None:intergenic | 65.0% | |
| TTGTGCGGCGAGAACCGTGG+CGG | + | chr1_4:55036665-55036684 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55035962 | 55038091 | 55035962 | ID=Msa0170720;Name=Msa0170720 |
| chr1_4 | mRNA | 55035962 | 55038091 | 55035962 | ID=Msa0170720-mRNA-1;Parent=Msa0170720;Name=Msa0170720-mRNA-1;_AED=0.47;_eAED=0.46;_QI=0|0|0|0.5|1|1|4|0|440 |
| chr1_4 | exon | 55038017 | 55038091 | 55038017 | ID=Msa0170720-mRNA-1:exon:16452;Parent=Msa0170720-mRNA-1 |
| chr1_4 | exon | 55037282 | 55037448 | 55037282 | ID=Msa0170720-mRNA-1:exon:16451;Parent=Msa0170720-mRNA-1 |
| chr1_4 | exon | 55037067 | 55037188 | 55037067 | ID=Msa0170720-mRNA-1:exon:16450;Parent=Msa0170720-mRNA-1 |
| chr1_4 | exon | 55035962 | 55036920 | 55035962 | ID=Msa0170720-mRNA-1:exon:16449;Parent=Msa0170720-mRNA-1 |
| chr1_4 | CDS | 55038017 | 55038091 | 55038017 | ID=Msa0170720-mRNA-1:cds;Parent=Msa0170720-mRNA-1 |
| chr1_4 | CDS | 55037282 | 55037448 | 55037282 | ID=Msa0170720-mRNA-1:cds;Parent=Msa0170720-mRNA-1 |
| chr1_4 | CDS | 55037067 | 55037188 | 55037067 | ID=Msa0170720-mRNA-1:cds;Parent=Msa0170720-mRNA-1 |
| chr1_4 | CDS | 55035962 | 55036920 | 55035962 | ID=Msa0170720-mRNA-1:cds;Parent=Msa0170720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
