Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0170780 | sp|C0H8I2|SETD6_SALSA | 26.168 | 321 | 166 | 11 | 6 | 305 | 16 | 286 | 2.67e-19 | 94.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0170780 | A0A072VLJ5 | 94.970 | 497 | 25 | 0 | 1 | 497 | 1 | 497 | 0.0 | 907 |
Gene ID | Type | Classification |
---|---|---|
Msa0170780 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0170780 | MtrunA17_Chr1g0188461 | 94.970 | 497 | 25 | 0 | 1 | 497 | 1 | 497 | 0.0 | 907 |
Msa0170780 | MtrunA17_Chr4g0042701 | 29.293 | 198 | 126 | 6 | 6 | 197 | 55 | 244 | 4.56e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0170780 | AT3G56570.1 | 53.918 | 536 | 200 | 9 | 1 | 495 | 1 | 530 | 0.0 | 534 |
Msa0170780 | AT3G56570.2 | 53.818 | 537 | 200 | 10 | 1 | 495 | 1 | 531 | 0.0 | 530 |
Find 97 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAACGGATATTCCTTCTTC+TGG | 0.183343 | 1_4:+55137766 | None:intergenic |
TGCTTGTTTGGGTGGTTATT+TGG | 0.212284 | 1_4:-55137644 | Msa0170780:CDS |
ATTTAATACTTACGGGATAT+TGG | 0.228032 | 1_4:-55134648 | Msa0170780:CDS |
ATTGTAAGACAAGCTTTCTT+TGG | 0.277640 | 1_4:+55137700 | None:intergenic |
ATAGATGATTACCATGGTTT+TGG | 0.280289 | 1_4:-55136451 | Msa0170780:CDS |
CAAAGCATCACAAACTTCTT+TGG | 0.300506 | 1_4:+55134235 | None:intergenic |
GATCATTGAAAATGCTTGTT+TGG | 0.302331 | 1_4:-55137656 | Msa0170780:CDS |
GCTTGTTTGGGTGGTTATTT+GGG | 0.306425 | 1_4:-55137643 | Msa0170780:CDS |
AAGCTTAACCCGGAATTCTT+TGG | 0.317812 | 1_4:-55136526 | Msa0170780:CDS |
GATTTCACACAATACTTTAA+CGG | 0.318389 | 1_4:+55137750 | None:intergenic |
TGATATCGTGAACATTGATT+TGG | 0.321625 | 1_4:-55134573 | Msa0170780:CDS |
TCGAGAAGAAATAAGACTTT+TGG | 0.326128 | 1_4:+55136483 | None:intergenic |
TTTAATACTTACGGGATATT+GGG | 0.328807 | 1_4:-55134647 | Msa0170780:CDS |
GCTGCTTTGCTACATAGATA+TGG | 0.329797 | 1_4:-55134620 | Msa0170780:CDS |
TAACGGATATTCCTTCTTCT+GGG | 0.337917 | 1_4:+55137767 | None:intergenic |
AGATGATGTATAATAAAATA+AGG | 0.350807 | 1_4:+55134402 | None:intergenic |
TCAACAGGAATGTTTGCCTT+TGG | 0.352496 | 1_4:-55137545 | Msa0170780:CDS |
TATTATGTATGAGAGGAGTT+TGG | 0.353787 | 1_4:-55137608 | Msa0170780:CDS |
TACAGGTATTTAATACTTAC+GGG | 0.360220 | 1_4:-55134655 | Msa0170780:intron |
TGTTCCACACCAAAGAATTC+CGG | 0.362959 | 1_4:+55136517 | None:intergenic |
TCCAGATTCAATCATAAAAC+TGG | 0.369547 | 1_4:-55135141 | Msa0170780:intron |
AGGAATGTTTGCCTTTGGTT+TGG | 0.382903 | 1_4:-55137540 | Msa0170780:CDS |
ACTAGCTCAAAATTCCTATA+TGG | 0.383524 | 1_4:-55135034 | Msa0170780:CDS |
TATTTCGAGATATCATTTGA+TGG | 0.393572 | 1_4:-55134443 | Msa0170780:CDS |
ATACAGGTATTTAATACTTA+CGG | 0.399560 | 1_4:-55134656 | Msa0170780:intron |
TTGTGATGCTTTGTTGTCAC+TGG | 0.403340 | 1_4:-55134225 | Msa0170780:CDS |
TTTGGGTGAGGAGTCTCCTT+GGG | 0.404018 | 1_4:-55137590 | Msa0170780:CDS |
TTGAAGGTTCTGAATCCAAC+AGG | 0.407785 | 1_4:+55136548 | None:intergenic |
GTGTGGTACTGAGCTTCATC+AGG | 0.410493 | 1_4:-55137491 | Msa0170780:intron |
ATCATTGAAAATGCTTGTTT+GGG | 0.415652 | 1_4:-55137655 | Msa0170780:CDS |
CGTGAACATTGATTTGGAAC+TGG | 0.422905 | 1_4:-55134567 | Msa0170780:CDS |
GTTTGGGTGAGGAGTCTCCT+TGG | 0.425068 | 1_4:-55137591 | Msa0170780:CDS |
AATTCCGGGTTAAGCTTTGA+AGG | 0.427673 | 1_4:+55136532 | None:intergenic |
GTCTCCCTTTGGAGAAGGTT+AGG | 0.432291 | 1_4:-55134494 | Msa0170780:CDS |
GATATGAGGGAGAGTCTCTA+TGG | 0.435839 | 1_4:-55134200 | Msa0170780:CDS |
TGTTGTCACTGGCTGATATG+AGG | 0.437422 | 1_4:-55134214 | Msa0170780:CDS |
GTTCCACACCAAAGAATTCC+GGG | 0.439461 | 1_4:+55136518 | None:intergenic |
GGTGAGGAGTCTCCTTGGGC+TGG | 0.445832 | 1_4:-55137586 | Msa0170780:CDS |
TAGAAAGCTATATCATTCTT+CGG | 0.460741 | 1_4:-55134120 | Msa0170780:CDS |
GTATGAGAGGAGTTTGGGTG+AGG | 0.461310 | 1_4:-55137602 | Msa0170780:CDS |
AATTTATTGTAAACATCATC+CGG | 0.467200 | 1_4:+55134374 | None:intergenic |
ATCAATGTTCACGATATCAT+AGG | 0.469295 | 1_4:+55134577 | None:intergenic |
ATTATGTATGAGAGGAGTTT+GGG | 0.471089 | 1_4:-55137607 | Msa0170780:CDS |
TCTTGATCTGCTGTGGCGGT+TGG | 0.477152 | 1_4:+55134517 | None:intergenic |
AGAGAATATTCTACCCCTGT+TGG | 0.478060 | 1_4:-55136563 | Msa0170780:CDS |
GCAGATCAAGAGTCTCCCTT+TGG | 0.480598 | 1_4:-55134505 | Msa0170780:CDS |
GAGCAACACATTGCAATTTG+TGG | 0.492207 | 1_4:-55137794 | Msa0170780:CDS |
TATATGGATAAAACTGAGAA+AGG | 0.497499 | 1_4:-55135018 | Msa0170780:CDS |
TCTCTCTGGCAATGGCCACC+AGG | 0.500332 | 1_4:-55137958 | None:intergenic |
CTGCTAGGAAGAAGTTGAAA+AGG | 0.505819 | 1_4:-55134016 | Msa0170780:CDS |
GTTGCTCCATTCGAATCCAT+TGG | 0.527285 | 1_4:+55137810 | None:intergenic |
GCTCAGTACCACACAAAAGC+TGG | 0.530815 | 1_4:+55137500 | None:intergenic |
TGAGGATGATACTTCAATGC+TGG | 0.532383 | 1_4:-55134962 | Msa0170780:CDS |
ATAGCCTAACCTTCTCCAAA+GGG | 0.535931 | 1_4:+55134490 | None:intergenic |
CAAGAGTCTCCCTTTGGAGA+AGG | 0.539649 | 1_4:-55134499 | Msa0170780:CDS |
TTTGTGGACACCCCAGAAGA+AGG | 0.540799 | 1_4:-55137778 | Msa0170780:CDS |
GGTTTGGAGTGTTGATGAAG+TGG | 0.545193 | 1_4:-55137524 | Msa0170780:CDS |
GTTGTCACTGGCTGATATGA+GGG | 0.545553 | 1_4:-55134213 | Msa0170780:CDS |
GCTTCACTTACAGATCTGCC+AGG | 0.550005 | 1_4:+55136419 | None:intergenic |
AGAAGTTAGCAGTGGAGCTG+AGG | 0.554356 | 1_4:-55134923 | Msa0170780:intron |
TGATACTTCAATGCTGGAGA+TGG | 0.557586 | 1_4:-55134956 | Msa0170780:CDS |
AACGGATATTCCTTCTTCTG+GGG | 0.559930 | 1_4:+55137768 | None:intergenic |
ATTGAAAATGCTTGTTTGGG+TGG | 0.566174 | 1_4:-55137652 | Msa0170780:CDS |
TAACCCGGAATTCTTTGGTG+TGG | 0.569437 | 1_4:-55136521 | Msa0170780:CDS |
GTTTACGTGCATTCAAGCGA+TGG | 0.570568 | 1_4:-55137840 | Msa0170780:CDS |
GTCTTCTAACAACGAATCTG+AGG | 0.572955 | 1_4:-55135091 | Msa0170780:CDS |
CGGTTCTGCGTATCAGTGAA+AGG | 0.574157 | 1_4:-55134100 | Msa0170780:CDS |
GTTGAAAAGGACAACAAAGA+GGG | 0.577396 | 1_4:-55134003 | Msa0170780:CDS |
ATGATATCGAGGCATTAGAA+AGG | 0.589395 | 1_4:-55134160 | Msa0170780:CDS |
AGAACCTTCAAAGCTTAACC+CGG | 0.596675 | 1_4:-55136536 | Msa0170780:CDS |
GGGAGACTCTTGATCTGCTG+TGG | 0.600462 | 1_4:+55134510 | None:intergenic |
AATAGCCTAACCTTCTCCAA+AGG | 0.600517 | 1_4:+55134489 | None:intergenic |
TGAAGTCCAATGGATTCGAA+TGG | 0.603454 | 1_4:-55137816 | Msa0170780:CDS |
CTTCACTTACAGATCTGCCA+GGG | 0.605599 | 1_4:+55136420 | None:intergenic |
TTACTAATCTTAGCTCTGCT+AGG | 0.608261 | 1_4:-55134031 | Msa0170780:CDS |
AAAGGCAAACATTCCTGTTG+AGG | 0.608468 | 1_4:+55137547 | None:intergenic |
AGTTGAAAAGGACAACAAAG+AGG | 0.608977 | 1_4:-55134004 | Msa0170780:CDS |
AAGCGATGGATGAAGTCCAA+TGG | 0.611498 | 1_4:-55137826 | Msa0170780:CDS |
ATCGATAGAAGATGATATCG+AGG | 0.611653 | 1_4:-55134171 | Msa0170780:CDS |
CTGTTGCTATTATGTATGAG+AGG | 0.614081 | 1_4:-55137615 | Msa0170780:CDS |
ATGATAAAAGAAGTTAGCAG+TGG | 0.615680 | 1_4:-55134931 | Msa0170780:CDS |
GGAGTATTCTTCAATTACTG+AGG | 0.621581 | 1_4:-55134980 | Msa0170780:CDS |
ATTTGGAACTGGTACTTCAG+TGG | 0.622999 | 1_4:-55134556 | Msa0170780:CDS |
AGACTCTTGATCTGCTGTGG+CGG | 0.628471 | 1_4:+55134513 | None:intergenic |
AGCTGAAGATAACCAGCCCA+AGG | 0.632130 | 1_4:+55137574 | None:intergenic |
TGAAATCAATGCAGGTGATG+TGG | 0.648395 | 1_4:-55137734 | Msa0170780:CDS |
TCATCAACACTCCAAACCAA+AGG | 0.650057 | 1_4:+55137529 | None:intergenic |
TTCGAGATAGATGATTACCA+TGG | 0.653774 | 1_4:-55136457 | Msa0170780:CDS |
GTATTGTGTGAAATCAATGC+AGG | 0.659600 | 1_4:-55137742 | Msa0170780:CDS |
TGAAGGTTCTGAATCCAACA+GGG | 0.663792 | 1_4:+55136549 | None:intergenic |
AAAATAAGGAGTTCAATCTG+TGG | 0.668743 | 1_4:+55134416 | None:intergenic |
ATTCAATCATAAAACTGGTG+CGG | 0.668860 | 1_4:-55135136 | Msa0170780:CDS |
GGGGAACCATGCCAAAACCA+TGG | 0.671012 | 1_4:+55136440 | None:intergenic |
TTCGTTGTTAGAAGACAAAG+CGG | 0.673995 | 1_4:+55135098 | None:intergenic |
GAAAGGCGTTGATAGCGACA+TGG | 0.674161 | 1_4:-55135001 | Msa0170780:CDS |
TTCACTTACAGATCTGCCAG+GGG | 0.708708 | 1_4:+55136421 | None:intergenic |
GAAGGTTCTGAATCCAACAG+GGG | 0.712164 | 1_4:+55136550 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGTTTTTATGTATTATTG+AGG | - | chr1_4:55134478-55134497 | Msa0170780:CDS | 15.0% |
!! | ATTATTAAACAATACATGTA+TGG | + | chr1_4:55135862-55135881 | None:intergenic | 15.0% |
!! | AACATTTAAAAACTACAAAA+TGG | + | chr1_4:55137180-55137199 | None:intergenic | 15.0% |
!! | AGATGATGTATAATAAAATA+AGG | + | chr1_4:55137543-55137562 | None:intergenic | 15.0% |
!!! | AACTTTTGATAAGGAAAAAT+GGG | + | chr1_4:55134046-55134065 | None:intergenic | 20.0% |
!!! | AAACTTTTGATAAGGAAAAA+TGG | + | chr1_4:55134047-55134066 | None:intergenic | 20.0% |
!!! | TTTAGCATAAACTTTTGATA+AGG | + | chr1_4:55134055-55134074 | None:intergenic | 20.0% |
!! | CATTATGAGAGATTTATATT+TGG | - | chr1_4:55134507-55134526 | Msa0170780:CDS | 20.0% |
!! | TCAATAAAAAAAAAACAAGC+AGG | + | chr1_4:55134916-55134935 | None:intergenic | 20.0% |
!! | GGCATTAAACTAAAATTAAA+AGG | + | chr1_4:55134958-55134977 | None:intergenic | 20.0% |
!! | AGTAATAACTAGCAAATTAA+GGG | + | chr1_4:55135591-55135610 | None:intergenic | 20.0% |
!! | AAGTAATAACTAGCAAATTA+AGG | + | chr1_4:55135592-55135611 | None:intergenic | 20.0% |
!!! | AGTGTTTTTAACAATAACAA+TGG | + | chr1_4:55135631-55135650 | None:intergenic | 20.0% |
!! | GTGTATATTATCATTTATCA+TGG | + | chr1_4:55135803-55135822 | None:intergenic | 20.0% |
!! | ATGTTATACATTTGATAAGA+GGG | + | chr1_4:55135927-55135946 | None:intergenic | 20.0% |
!! | TATGTTATACATTTGATAAG+AGG | + | chr1_4:55135928-55135947 | None:intergenic | 20.0% |
!! | ATATGTTATTAGATTGTCAA+AGG | - | chr1_4:55136058-55136077 | Msa0170780:intron | 20.0% |
!!! | ATTTAAAGTGTTTGTATTCT+TGG | - | chr1_4:55136154-55136173 | Msa0170780:intron | 20.0% |
!!! | TTTAAAGTGTTTGTATTCTT+GGG | - | chr1_4:55136155-55136174 | Msa0170780:intron | 20.0% |
!!! | TTGAAGTCTTTTTAAGTTTA+AGG | - | chr1_4:55136290-55136309 | Msa0170780:intron | 20.0% |
!!! | ACCAATTTTTTTTATGTATC+TGG | - | chr1_4:55136316-55136335 | Msa0170780:intron | 20.0% |
!! | TCCAGATACATAAAAAAAAT+TGG | + | chr1_4:55136320-55136339 | None:intergenic | 20.0% |
!!! | GAATTGTTTTTAGTATTACT+CGG | + | chr1_4:55136421-55136440 | None:intergenic | 20.0% |
!! | GAGTAATACTAAAAACAATT+CGG | - | chr1_4:55136420-55136439 | Msa0170780:intron | 20.0% |
!! | AGTAATACTAAAAACAATTC+GGG | - | chr1_4:55136421-55136440 | Msa0170780:intron | 20.0% |
!!! | TTTTTTTTTTTAACTTCCAC+TGG | - | chr1_4:55137080-55137099 | Msa0170780:intron | 20.0% |
!! | AAATAAATATATGCTATCTG+AGG | + | chr1_4:55137145-55137164 | None:intergenic | 20.0% |
!! | TATTAAATACCTGTATCAAA+TGG | + | chr1_4:55137282-55137301 | None:intergenic | 20.0% |
!! | ATACAGGTATTTAATACTTA+CGG | - | chr1_4:55137286-55137305 | Msa0170780:intron | 20.0% |
!!! | ATTATACATCATCTTTTTAC+CGG | - | chr1_4:55137549-55137568 | Msa0170780:CDS | 20.0% |
!! | AATTTATTGTAAACATCATC+CGG | + | chr1_4:55137571-55137590 | None:intergenic | 20.0% |
! | GATTTCACACAATACTTTAA+CGG | + | chr1_4:55134195-55134214 | None:intergenic | 25.0% |
! | ATCATTGAAAATGCTTGTTT+GGG | - | chr1_4:55134287-55134306 | Msa0170780:CDS | 25.0% |
! | GAGATTTATATTTGGACTAA+TGG | - | chr1_4:55134515-55134534 | Msa0170780:CDS | 25.0% |
! | ACTTATATGATAAGCGTTTA+TGG | - | chr1_4:55134802-55134821 | Msa0170780:intron | 25.0% |
!! | AAGAAAACTTTTAGTCTGTT+TGG | + | chr1_4:55134857-55134876 | None:intergenic | 25.0% |
! | CAAAAGTCAAATGAATTACA+GGG | + | chr1_4:55134979-55134998 | None:intergenic | 25.0% |
! | TTCATAATATGAAAGCTTCA+AGG | + | chr1_4:55135015-55135034 | None:intergenic | 25.0% |
! | TCACAATTATATCCATTGAA+AGG | - | chr1_4:55135126-55135145 | Msa0170780:CDS | 25.0% |
! | CACAATTATATCCATTGAAA+GGG | - | chr1_4:55135127-55135146 | Msa0170780:CDS | 25.0% |
!! | ATTTTTAAACTCCCTTTCAA+TGG | + | chr1_4:55135141-55135160 | None:intergenic | 25.0% |
! | TTGAAAGGGAGTTTAAAAAT+TGG | - | chr1_4:55135141-55135160 | Msa0170780:intron | 25.0% |
!! | GATCAGAAAATTTTCACAAA+AGG | + | chr1_4:55135300-55135319 | None:intergenic | 25.0% |
! | GTAATAACTAGCAAATTAAG+GGG | + | chr1_4:55135590-55135609 | None:intergenic | 25.0% |
! | AATGATAATATACACTGTCT+TGG | - | chr1_4:55135808-55135827 | Msa0170780:intron | 25.0% |
!!! | CGTTTCATTATGACATTTTT+TGG | - | chr1_4:55136007-55136026 | Msa0170780:intron | 25.0% |
!!! | TTCATTATGACATTTTTTGG+AGG | - | chr1_4:55136010-55136029 | Msa0170780:intron | 25.0% |
!!! | TCATTATGACATTTTTTGGA+GGG | - | chr1_4:55136011-55136030 | Msa0170780:intron | 25.0% |
!!! | TCAATACGTTTTAAAACTAC+TGG | - | chr1_4:55136112-55136131 | Msa0170780:intron | 25.0% |
!!! | AGTCTTATATGATGATTTTG+AGG | - | chr1_4:55136260-55136279 | Msa0170780:intron | 25.0% |
! | TAGGATTAAAAAAACTGCAA+TGG | - | chr1_4:55136364-55136383 | Msa0170780:intron | 25.0% |
! | GTAATACTAAAAACAATTCG+GGG | - | chr1_4:55136422-55136441 | Msa0170780:intron | 25.0% |
! | ATTCTTCTGTTCTTAATTGT+TGG | + | chr1_4:55136475-55136494 | None:intergenic | 25.0% |
!!! | ATTTCTGTTCAGTTTTGATT+CGG | + | chr1_4:55136538-55136557 | None:intergenic | 25.0% |
! | AGTTATATTAGTCAGTTAGA+GGG | + | chr1_4:55136681-55136700 | None:intergenic | 25.0% |
! | TAGTTATATTAGTCAGTTAG+AGG | + | chr1_4:55136682-55136701 | None:intergenic | 25.0% |
! | ACTGTTAGAATAAATCAGTA+GGG | + | chr1_4:55136735-55136754 | None:intergenic | 25.0% |
!!! | TTTCTCAGTTTTATCCATAT+AGG | + | chr1_4:55136925-55136944 | None:intergenic | 25.0% |
! | TATATGGATAAAACTGAGAA+AGG | - | chr1_4:55136924-55136943 | Msa0170780:intron | 25.0% |
!! | CATTATAGTTTTCTTTGACA+TGG | - | chr1_4:55137241-55137260 | Msa0170780:intron | 25.0% |
! | TACAGGTATTTAATACTTAC+GGG | - | chr1_4:55137287-55137306 | Msa0170780:intron | 25.0% |
! | ATTTAATACTTACGGGATAT+TGG | - | chr1_4:55137294-55137313 | Msa0170780:intron | 25.0% |
! | TTTAATACTTACGGGATATT+GGG | - | chr1_4:55137295-55137314 | Msa0170780:intron | 25.0% |
! | TATTTCGAGATATCATTTGA+TGG | - | chr1_4:55137499-55137518 | Msa0170780:CDS | 25.0% |
! | GATATCATCATTCAAAAAAG+TGG | + | chr1_4:55137644-55137663 | None:intergenic | 25.0% |
! | TAGAAAGCTATATCATTCTT+CGG | - | chr1_4:55137822-55137841 | Msa0170780:CDS | 25.0% |
!! | CATAATTTCTGAGTTTTTGA+AGG | + | chr1_4:55137873-55137892 | None:intergenic | 25.0% |
ATTGTAAGACAAGCTTTCTT+TGG | + | chr1_4:55134245-55134264 | None:intergenic | 30.0% | |
GATCATTGAAAATGCTTGTT+TGG | - | chr1_4:55134286-55134305 | Msa0170780:CDS | 30.0% | |
TATTATGTATGAGAGGAGTT+TGG | - | chr1_4:55134334-55134353 | Msa0170780:CDS | 30.0% | |
ATTATGTATGAGAGGAGTTT+GGG | - | chr1_4:55134335-55134354 | Msa0170780:CDS | 30.0% | |
TGGAACTATGACAATGTAAT+AGG | - | chr1_4:55134535-55134554 | Msa0170780:CDS | 30.0% | |
GGAACTATGACAATGTAATA+GGG | - | chr1_4:55134536-55134555 | Msa0170780:CDS | 30.0% | |
AATAAGCTGAAAACAGCTTA+TGG | + | chr1_4:55134679-55134698 | None:intergenic | 30.0% | |
GCAAAAGTCAAATGAATTAC+AGG | + | chr1_4:55134980-55134999 | None:intergenic | 30.0% | |
!!! | TTTCTCGACTCTTCTTTTTT+AGG | - | chr1_4:55135228-55135247 | Msa0170780:intron | 30.0% |
TTCTGATCTCTTATCATTGT+AGG | - | chr1_4:55135312-55135331 | Msa0170780:intron | 30.0% | |
! | AGATAAAGCTTTTGTCTATG+AGG | - | chr1_4:55135349-55135368 | Msa0170780:intron | 30.0% |
! | TCGAGAAGAAATAAGACTTT+TGG | + | chr1_4:55135462-55135481 | None:intergenic | 30.0% |
! | ATAGATGATTACCATGGTTT+TGG | - | chr1_4:55135491-55135510 | Msa0170780:intron | 30.0% |
TAATGACTTGAGTTCATCTA+TGG | + | chr1_4:55135657-55135676 | None:intergenic | 30.0% | |
GAAGAATCTTCATGCATATT+TGG | + | chr1_4:55135714-55135733 | None:intergenic | 30.0% | |
!! | TGTATGGACTAGTAAAACTA+TGG | + | chr1_4:55135846-55135865 | None:intergenic | 30.0% |
CATTCAATAGATTACAACCT+TGG | + | chr1_4:55136038-55136057 | None:intergenic | 30.0% | |
TATGATCAAGCTACGTTAAT+TGG | + | chr1_4:55136088-55136107 | None:intergenic | 30.0% | |
! | ACTGGTGTATACTATTTTGT+TGG | - | chr1_4:55136130-55136149 | Msa0170780:intron | 30.0% |
TTCTTGGGATTTCAAGAAAA+AGG | - | chr1_4:55136170-55136189 | Msa0170780:intron | 30.0% | |
GGATTTCAAGAAAAAGGTTA+TGG | - | chr1_4:55136176-55136195 | Msa0170780:intron | 30.0% | |
! | TAGCTTGCAATTAGTTATCT+TGG | - | chr1_4:55136213-55136232 | Msa0170780:intron | 30.0% |
! | AGTTATCTTGGTGGTTTAAA+TGG | - | chr1_4:55136225-55136244 | Msa0170780:intron | 30.0% |
TGGTTTAAATGGAAGAACTA+AGG | - | chr1_4:55136236-55136255 | Msa0170780:intron | 30.0% | |
! | ATGTTGTATGTGGTTTGTAT+AGG | - | chr1_4:55136345-55136364 | Msa0170780:intron | 30.0% |
TTAGTATTACTCGGTTAGAT+TGG | + | chr1_4:55136412-55136431 | None:intergenic | 30.0% | |
GAGAAATAGAAAAAACAAGC+AGG | - | chr1_4:55136500-55136519 | Msa0170780:CDS | 30.0% | |
! | AAGATAAAACTTTTGCGAAG+AGG | + | chr1_4:55136595-55136614 | None:intergenic | 30.0% |
ATAGAGGGAAATCAAAATAG+AGG | + | chr1_4:55136651-55136670 | None:intergenic | 30.0% | |
TTAGAGGGGATATAAATAGA+GGG | + | chr1_4:55136666-55136685 | None:intergenic | 30.0% | |
GTTATATTAGTCAGTTAGAG+GGG | + | chr1_4:55136680-55136699 | None:intergenic | 30.0% | |
CACTGTTAGAATAAATCAGT+AGG | + | chr1_4:55136736-55136755 | None:intergenic | 30.0% | |
!! | CTACTGATTTATTCTAACAG+TGG | - | chr1_4:55136734-55136753 | Msa0170780:intron | 30.0% |
TCCAGATTCAATCATAAAAC+TGG | - | chr1_4:55136801-55136820 | Msa0170780:intron | 30.0% | |
!! | ACCAGTTTTATGATTGAATC+TGG | + | chr1_4:55136805-55136824 | None:intergenic | 30.0% |
ATTCAATCATAAAACTGGTG+CGG | - | chr1_4:55136806-55136825 | Msa0170780:intron | 30.0% | |
ACTAGCTCAAAATTCCTATA+TGG | - | chr1_4:55136908-55136927 | Msa0170780:intron | 30.0% | |
ATGATAAAAGAAGTTAGCAG+TGG | - | chr1_4:55137011-55137030 | Msa0170780:intron | 30.0% | |
GTATCAAATGGAAGAATAAG+AGG | + | chr1_4:55137270-55137289 | None:intergenic | 30.0% | |
CTTATTCTTCCATTTGATAC+AGG | - | chr1_4:55137270-55137289 | Msa0170780:intron | 30.0% | |
ATCAATGTTCACGATATCAT+AGG | + | chr1_4:55137368-55137387 | None:intergenic | 30.0% | |
! | TGATATCGTGAACATTGATT+TGG | - | chr1_4:55137369-55137388 | Msa0170780:intron | 30.0% |
! | CTCGAAATATTCAGAGTTTT+CGG | + | chr1_4:55137488-55137507 | None:intergenic | 30.0% |
AAAATAAGGAGTTCAATCTG+TGG | + | chr1_4:55137529-55137548 | None:intergenic | 30.0% | |
!! | TGATAAGGAAAAATGGGTTG+TGG | + | chr1_4:55134040-55134059 | None:intergenic | 35.0% |
! | TAACGGATATTCCTTCTTCT+GGG | + | chr1_4:55134178-55134197 | None:intergenic | 35.0% |
! | TTAACGGATATTCCTTCTTC+TGG | + | chr1_4:55134179-55134198 | None:intergenic | 35.0% |
GTATTGTGTGAAATCAATGC+AGG | - | chr1_4:55134200-55134219 | Msa0170780:CDS | 35.0% | |
ATTGAAAATGCTTGTTTGGG+TGG | - | chr1_4:55134290-55134309 | Msa0170780:CDS | 35.0% | |
! | CTGTTGCTATTATGTATGAG+AGG | - | chr1_4:55134327-55134346 | Msa0170780:CDS | 35.0% |
! | TGTTTGTTGATTGCGAGTAA+AGG | - | chr1_4:55134562-55134581 | Msa0170780:CDS | 35.0% |
! | GTTTGTTGATTGCGAGTAAA+GGG | - | chr1_4:55134563-55134582 | Msa0170780:CDS | 35.0% |
GAGTAAAGGGTTGTTTGTAT+TGG | - | chr1_4:55134576-55134595 | Msa0170780:CDS | 35.0% | |
GACATAAACATTTGTGAGAC+TGG | - | chr1_4:55134619-55134638 | Msa0170780:CDS | 35.0% | |
TTCAAAGAGCTTATGGAAAC+AGG | - | chr1_4:55134642-55134661 | Msa0170780:CDS | 35.0% | |
GCGATATACTTGTGTGAAAA+TGG | - | chr1_4:55134881-55134900 | Msa0170780:intron | 35.0% | |
! | ATGCACTTTTCAATGAACCT+CGG | + | chr1_4:55135087-55135106 | None:intergenic | 35.0% |
AAAAATTGGCAGAAGAGACA+AGG | - | chr1_4:55135155-55135174 | Msa0170780:intron | 35.0% | |
TTCGAGATAGATGATTACCA+TGG | - | chr1_4:55135485-55135504 | Msa0170780:intron | 35.0% | |
! | CCATTCAGAATCCTTTTCTT+CGG | - | chr1_4:55135764-55135783 | Msa0170780:intron | 35.0% |
! | CTTTTACTTCTCCGAAGAAA+AGG | + | chr1_4:55135778-55135797 | None:intergenic | 35.0% |
! | ATTTGTTCTTTTGCAGTTGC+AGG | + | chr1_4:55135983-55136002 | None:intergenic | 35.0% |
CTTGCAATTAGTTATCTTGG+TGG | - | chr1_4:55136216-55136235 | Msa0170780:intron | 35.0% | |
!!! | AGTTTTGATTCGGCGATAAA+AGG | + | chr1_4:55136528-55136547 | None:intergenic | 35.0% |
GTTAGAGGGGATATAAATAG+AGG | + | chr1_4:55136667-55136686 | None:intergenic | 35.0% | |
AAATCAGTAGGGCAGAATAA+GGG | + | chr1_4:55136724-55136743 | None:intergenic | 35.0% | |
TAAATCAGTAGGGCAGAATA+AGG | + | chr1_4:55136725-55136744 | None:intergenic | 35.0% | |
TTCGTTGTTAGAAGACAAAG+CGG | + | chr1_4:55136847-55136866 | None:intergenic | 35.0% | |
! | GGAGTATTCTTCAATTACTG+AGG | - | chr1_4:55136962-55136981 | Msa0170780:intron | 35.0% |
AAGAGTAGAAGAGTGACTAT+TGG | + | chr1_4:55137212-55137231 | None:intergenic | 35.0% | |
! | CAAAGCATCACAAACTTCTT+TGG | + | chr1_4:55137710-55137729 | None:intergenic | 35.0% |
ATCGATAGAAGATGATATCG+AGG | - | chr1_4:55137771-55137790 | Msa0170780:CDS | 35.0% | |
! | ATGATATCGAGGCATTAGAA+AGG | - | chr1_4:55137782-55137801 | Msa0170780:CDS | 35.0% |
!! | TTACTAATCTTAGCTCTGCT+AGG | - | chr1_4:55137911-55137930 | Msa0170780:intron | 35.0% |
AGTTGAAAAGGACAACAAAG+AGG | - | chr1_4:55137938-55137957 | Msa0170780:intron | 35.0% | |
GTTGAAAAGGACAACAAAGA+GGG | - | chr1_4:55137939-55137958 | Msa0170780:intron | 35.0% | |
! | TGAAGTCCAATGGATTCGAA+TGG | - | chr1_4:55134126-55134145 | Msa0170780:CDS | 40.0% |
GAGCAACACATTGCAATTTG+TGG | - | chr1_4:55134148-55134167 | Msa0170780:CDS | 40.0% | |
AACGGATATTCCTTCTTCTG+GGG | + | chr1_4:55134177-55134196 | None:intergenic | 40.0% | |
TGAAATCAATGCAGGTGATG+TGG | - | chr1_4:55134208-55134227 | Msa0170780:CDS | 40.0% | |
TGCTTGTTTGGGTGGTTATT+TGG | - | chr1_4:55134298-55134317 | Msa0170780:CDS | 40.0% | |
GCTTGTTTGGGTGGTTATTT+GGG | - | chr1_4:55134299-55134318 | Msa0170780:CDS | 40.0% | |
AAAGGCAAACATTCCTGTTG+AGG | + | chr1_4:55134398-55134417 | None:intergenic | 40.0% | |
TCAACAGGAATGTTTGCCTT+TGG | - | chr1_4:55134397-55134416 | Msa0170780:CDS | 40.0% | |
AGGAATGTTTGCCTTTGGTT+TGG | - | chr1_4:55134402-55134421 | Msa0170780:CDS | 40.0% | |
TCATCAACACTCCAAACCAA+AGG | + | chr1_4:55134416-55134435 | None:intergenic | 40.0% | |
! | AGACTGGTTCAAAGAGCTTA+TGG | - | chr1_4:55134635-55134654 | Msa0170780:CDS | 40.0% |
! | TGCACTTTTCAATGAACCTC+GGG | + | chr1_4:55135086-55135105 | None:intergenic | 40.0% |
! | AAGCTTTTGTCTATGAGGAC+TGG | - | chr1_4:55135354-55135373 | Msa0170780:intron | 40.0% |
AGAGAATATTCTACCCCTGT+TGG | - | chr1_4:55135379-55135398 | Msa0170780:intron | 40.0% | |
!! | TGAAGGTTCTGAATCCAACA+GGG | + | chr1_4:55135396-55135415 | None:intergenic | 40.0% |
!! | TTGAAGGTTCTGAATCCAAC+AGG | + | chr1_4:55135397-55135416 | None:intergenic | 40.0% |
AGAACCTTCAAAGCTTAACC+CGG | - | chr1_4:55135406-55135425 | Msa0170780:intron | 40.0% | |
! | AATTCCGGGTTAAGCTTTGA+AGG | + | chr1_4:55135413-55135432 | None:intergenic | 40.0% |
AAGCTTAACCCGGAATTCTT+TGG | - | chr1_4:55135416-55135435 | Msa0170780:intron | 40.0% | |
TGTTCCACACCAAAGAATTC+CGG | + | chr1_4:55135428-55135447 | None:intergenic | 40.0% | |
!!! | TGATTACCATGGTTTTGGCA+TGG | - | chr1_4:55135496-55135515 | Msa0170780:intron | 40.0% |
AGAACCATAGTAATCACCAG+AGG | + | chr1_4:55135548-55135567 | None:intergenic | 40.0% | |
CCGAAGAAAAGGATTCTGAA+TGG | + | chr1_4:55135767-55135786 | None:intergenic | 40.0% | |
CTGGAAAGCAATGTTGTATG+TGG | - | chr1_4:55136335-55136354 | Msa0170780:intron | 40.0% | |
TGAGAATAGAATTCTCCCCA+AGG | - | chr1_4:55136558-55136577 | Msa0170780:CDS | 40.0% | |
TCTGGAGAAGACAGTGTTAT+AGG | + | chr1_4:55136787-55136806 | None:intergenic | 40.0% | |
GTCTTCTAACAACGAATCTG+AGG | - | chr1_4:55136851-55136870 | Msa0170780:intron | 40.0% | |
TGAGGATGATACTTCAATGC+TGG | - | chr1_4:55136980-55136999 | Msa0170780:intron | 40.0% | |
TGATACTTCAATGCTGGAGA+TGG | - | chr1_4:55136986-55137005 | Msa0170780:intron | 40.0% | |
AACACAGACACGTAGATGAA+AGG | + | chr1_4:55137055-55137074 | None:intergenic | 40.0% | |
! | GCTGCTTTGCTACATAGATA+TGG | - | chr1_4:55137322-55137341 | Msa0170780:intron | 40.0% |
!! | CGTGAACATTGATTTGGAAC+TGG | - | chr1_4:55137375-55137394 | Msa0170780:intron | 40.0% |
! | ATTTGGAACTGGTACTTCAG+TGG | - | chr1_4:55137386-55137405 | Msa0170780:intron | 40.0% |
ATAGCCTAACCTTCTCCAAA+GGG | + | chr1_4:55137455-55137474 | None:intergenic | 40.0% | |
AATAGCCTAACCTTCTCCAA+AGG | + | chr1_4:55137456-55137475 | None:intergenic | 40.0% | |
! | TTGTGATGCTTTGTTGTCAC+TGG | - | chr1_4:55137717-55137736 | Msa0170780:CDS | 40.0% |
CTGCTAGGAAGAAGTTGAAA+AGG | - | chr1_4:55137926-55137945 | Msa0170780:intron | 40.0% | |
GTTTACGTGCATTCAAGCGA+TGG | - | chr1_4:55134102-55134121 | Msa0170780:CDS | 45.0% | |
AAGCGATGGATGAAGTCCAA+TGG | - | chr1_4:55134116-55134135 | Msa0170780:CDS | 45.0% | |
GTTGCTCCATTCGAATCCAT+TGG | + | chr1_4:55134135-55134154 | None:intergenic | 45.0% | |
! | TCTTCAGCTTTTGCCTCAAC+AGG | - | chr1_4:55134382-55134401 | Msa0170780:CDS | 45.0% |
!! | GGTTTGGAGTGTTGATGAAG+TGG | - | chr1_4:55134418-55134437 | Msa0170780:CDS | 45.0% |
!! | GAAGGTTCTGAATCCAACAG+GGG | + | chr1_4:55135395-55135414 | None:intergenic | 45.0% |
TAACCCGGAATTCTTTGGTG+TGG | - | chr1_4:55135421-55135440 | Msa0170780:intron | 45.0% | |
GTTCCACACCAAAGAATTCC+GGG | + | chr1_4:55135427-55135446 | None:intergenic | 45.0% | |
TTCACTTACAGATCTGCCAG+GGG | + | chr1_4:55135524-55135543 | None:intergenic | 45.0% | |
CTTCACTTACAGATCTGCCA+GGG | + | chr1_4:55135525-55135544 | None:intergenic | 45.0% | |
AGATCTGTAAGTGAAGCCTC+TGG | - | chr1_4:55135529-55135548 | Msa0170780:intron | 45.0% | |
GAAGCCTCTGGTGATTACTA+TGG | - | chr1_4:55135541-55135560 | Msa0170780:intron | 45.0% | |
CTTGCAGCACATGGTTATCA+AGG | + | chr1_4:55135960-55135979 | None:intergenic | 45.0% | |
!!! | GACATTTTTTGGAGGGTCCA+AGG | - | chr1_4:55136018-55136037 | Msa0170780:intron | 45.0% |
TTTGCGAAGAGGAAACCCTT+GGG | + | chr1_4:55136584-55136603 | None:intergenic | 45.0% | |
! | TTTTGCGAAGAGGAAACCCT+TGG | + | chr1_4:55136585-55136604 | None:intergenic | 45.0% |
GACTGATCATCACTTTCCAG+TGG | + | chr1_4:55137099-55137118 | None:intergenic | 45.0% | |
!!! | TTCAGAGTTTTCGGTGTCAC+TGG | + | chr1_4:55137479-55137498 | None:intergenic | 45.0% |
! | TGTTGTCACTGGCTGATATG+AGG | - | chr1_4:55137728-55137747 | Msa0170780:CDS | 45.0% |
! | GTTGTCACTGGCTGATATGA+GGG | - | chr1_4:55137729-55137748 | Msa0170780:CDS | 45.0% |
GATATGAGGGAGAGTCTCTA+TGG | - | chr1_4:55137742-55137761 | Msa0170780:CDS | 45.0% | |
!! | AATAATAATAATAATAATTG+TGG | - | chr1_4:55135879-55135898 | Msa0170780:intron | 5.0% |
GTGTAAACATGCGTACCTGG+TGG | + | chr1_4:55134002-55134021 | None:intergenic | 50.0% | |
GAGGTGTAAACATGCGTACC+TGG | + | chr1_4:55134005-55134024 | None:intergenic | 50.0% | |
GTTGTGGCGAAAATCGAGAG+AGG | + | chr1_4:55134024-55134043 | None:intergenic | 50.0% | |
TTTGTGGACACCCCAGAAGA+AGG | - | chr1_4:55134164-55134183 | Msa0170780:CDS | 50.0% | |
GTATGAGAGGAGTTTGGGTG+AGG | - | chr1_4:55134340-55134359 | Msa0170780:CDS | 50.0% | |
TTTGGGTGAGGAGTCTCCTT+GGG | - | chr1_4:55134352-55134371 | Msa0170780:CDS | 50.0% | |
AGCTGAAGATAACCAGCCCA+AGG | + | chr1_4:55134371-55134390 | None:intergenic | 50.0% | |
! | GAAGTGGACCAGCTTTTGTG+TGG | - | chr1_4:55134434-55134453 | Msa0170780:CDS | 50.0% |
GCTCAGTACCACACAAAAGC+TGG | + | chr1_4:55134445-55134464 | None:intergenic | 50.0% | |
! | GTGTGGTACTGAGCTTCATC+AGG | - | chr1_4:55134451-55134470 | Msa0170780:CDS | 50.0% |
! | CTCTGCATTTTCTATGCCCG+AGG | - | chr1_4:55135067-55135086 | Msa0170780:CDS | 50.0% |
GCTTCACTTACAGATCTGCC+AGG | + | chr1_4:55135526-55135545 | None:intergenic | 50.0% | |
!! | GAAAGGCGTTGATAGCGACA+TGG | - | chr1_4:55136941-55136960 | Msa0170780:intron | 50.0% |
AGAAGTTAGCAGTGGAGCTG+AGG | - | chr1_4:55137019-55137038 | Msa0170780:intron | 50.0% | |
AGACTCTTGATCTGCTGTGG+CGG | + | chr1_4:55137432-55137451 | None:intergenic | 50.0% | |
GCAGATCAAGAGTCTCCCTT+TGG | - | chr1_4:55137437-55137456 | Msa0170780:intron | 50.0% | |
! | CAAGAGTCTCCCTTTGGAGA+AGG | - | chr1_4:55137443-55137462 | Msa0170780:intron | 50.0% |
! | GTCTCCCTTTGGAGAAGGTT+AGG | - | chr1_4:55137448-55137467 | Msa0170780:intron | 50.0% |
CGGTTCTGCGTATCAGTGAA+AGG | - | chr1_4:55137842-55137861 | Msa0170780:CDS | 50.0% | |
GTTTGGGTGAGGAGTCTCCT+TGG | - | chr1_4:55134351-55134370 | Msa0170780:CDS | 55.0% | |
GGGGAACCATGCCAAAACCA+TGG | + | chr1_4:55135505-55135524 | None:intergenic | 55.0% | |
!!! | TGGTTTTGGCATGGTTCCCC+TGG | - | chr1_4:55135505-55135524 | Msa0170780:intron | 55.0% |
AGTTGCAGGCTTGCAGCACA+TGG | + | chr1_4:55135969-55135988 | None:intergenic | 55.0% | |
AGAATTCTCCCCAAGGCCCA+AGG | - | chr1_4:55136565-55136584 | Msa0170780:CDS | 55.0% | |
GAATTCTCCCCAAGGCCCAA+GGG | - | chr1_4:55136566-55136585 | Msa0170780:CDS | 55.0% | |
AGAGGAAACCCTTGGGCCTT+GGG | + | chr1_4:55136577-55136596 | None:intergenic | 55.0% | |
AAGAGGAAACCCTTGGGCCT+TGG | + | chr1_4:55136578-55136597 | None:intergenic | 55.0% | |
TCTTGATCTGCTGTGGCGGT+TGG | + | chr1_4:55137428-55137447 | None:intergenic | 55.0% | |
GGGAGACTCTTGATCTGCTG+TGG | + | chr1_4:55137435-55137454 | None:intergenic | 55.0% | |
GAGGAAACCCTTGGGCCTTG+GGG | + | chr1_4:55136576-55136595 | None:intergenic | 60.0% | |
GGTGAGGAGTCTCCTTGGGC+TGG | - | chr1_4:55134356-55134375 | Msa0170780:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 55133995 | 55137969 | 55133995 | ID=Msa0170780;Name=Msa0170780 |
chr1_4 | mRNA | 55133995 | 55137969 | 55133995 | ID=Msa0170780-mRNA-1;Parent=Msa0170780;Name=Msa0170780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.25|0.2|0.8|1|1|5|0|497 |
chr1_4 | exon | 55137959 | 55137969 | 55137959 | ID=Msa0170780-mRNA-1:exon:16480;Parent=Msa0170780-mRNA-1 |
chr1_4 | exon | 55137492 | 55137864 | 55137492 | ID=Msa0170780-mRNA-1:exon:16479;Parent=Msa0170780-mRNA-1 |
chr1_4 | exon | 55136430 | 55136626 | 55136430 | ID=Msa0170780-mRNA-1:exon:16478;Parent=Msa0170780-mRNA-1 |
chr1_4 | exon | 55134924 | 55135158 | 55134924 | ID=Msa0170780-mRNA-1:exon:16477;Parent=Msa0170780-mRNA-1 |
chr1_4 | exon | 55133995 | 55134672 | 55133995 | ID=Msa0170780-mRNA-1:exon:16476;Parent=Msa0170780-mRNA-1 |
chr1_4 | CDS | 55137959 | 55137969 | 55137959 | ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1 |
chr1_4 | CDS | 55137492 | 55137864 | 55137492 | ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1 |
chr1_4 | CDS | 55136430 | 55136626 | 55136430 | ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1 |
chr1_4 | CDS | 55134924 | 55135158 | 55134924 | ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1 |
chr1_4 | CDS | 55133995 | 55134672 | 55133995 | ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1 |
Gene Sequence |
Protein sequence |