AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170780 MtrunA17_Chr1g0188461 94.970 497 25 0 1 497 1 497 0.0 907
Msa0170780 MtrunA17_Chr4g0042701 29.293 198 126 6 6 197 55 244 4.56e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170780 AT3G56570.1 53.918 536 200 9 1 495 1 530 0.0 534
Msa0170780 AT3G56570.2 53.818 537 200 10 1 495 1 531 0.0 530

Find 97 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGGATATTCCTTCTTC+TGG 0.183343 1_4:+55137766 None:intergenic
TGCTTGTTTGGGTGGTTATT+TGG 0.212284 1_4:-55137644 Msa0170780:CDS
ATTTAATACTTACGGGATAT+TGG 0.228032 1_4:-55134648 Msa0170780:CDS
ATTGTAAGACAAGCTTTCTT+TGG 0.277640 1_4:+55137700 None:intergenic
ATAGATGATTACCATGGTTT+TGG 0.280289 1_4:-55136451 Msa0170780:CDS
CAAAGCATCACAAACTTCTT+TGG 0.300506 1_4:+55134235 None:intergenic
GATCATTGAAAATGCTTGTT+TGG 0.302331 1_4:-55137656 Msa0170780:CDS
GCTTGTTTGGGTGGTTATTT+GGG 0.306425 1_4:-55137643 Msa0170780:CDS
AAGCTTAACCCGGAATTCTT+TGG 0.317812 1_4:-55136526 Msa0170780:CDS
GATTTCACACAATACTTTAA+CGG 0.318389 1_4:+55137750 None:intergenic
TGATATCGTGAACATTGATT+TGG 0.321625 1_4:-55134573 Msa0170780:CDS
TCGAGAAGAAATAAGACTTT+TGG 0.326128 1_4:+55136483 None:intergenic
TTTAATACTTACGGGATATT+GGG 0.328807 1_4:-55134647 Msa0170780:CDS
GCTGCTTTGCTACATAGATA+TGG 0.329797 1_4:-55134620 Msa0170780:CDS
TAACGGATATTCCTTCTTCT+GGG 0.337917 1_4:+55137767 None:intergenic
AGATGATGTATAATAAAATA+AGG 0.350807 1_4:+55134402 None:intergenic
TCAACAGGAATGTTTGCCTT+TGG 0.352496 1_4:-55137545 Msa0170780:CDS
TATTATGTATGAGAGGAGTT+TGG 0.353787 1_4:-55137608 Msa0170780:CDS
TACAGGTATTTAATACTTAC+GGG 0.360220 1_4:-55134655 Msa0170780:intron
TGTTCCACACCAAAGAATTC+CGG 0.362959 1_4:+55136517 None:intergenic
TCCAGATTCAATCATAAAAC+TGG 0.369547 1_4:-55135141 Msa0170780:intron
AGGAATGTTTGCCTTTGGTT+TGG 0.382903 1_4:-55137540 Msa0170780:CDS
ACTAGCTCAAAATTCCTATA+TGG 0.383524 1_4:-55135034 Msa0170780:CDS
TATTTCGAGATATCATTTGA+TGG 0.393572 1_4:-55134443 Msa0170780:CDS
ATACAGGTATTTAATACTTA+CGG 0.399560 1_4:-55134656 Msa0170780:intron
TTGTGATGCTTTGTTGTCAC+TGG 0.403340 1_4:-55134225 Msa0170780:CDS
TTTGGGTGAGGAGTCTCCTT+GGG 0.404018 1_4:-55137590 Msa0170780:CDS
TTGAAGGTTCTGAATCCAAC+AGG 0.407785 1_4:+55136548 None:intergenic
GTGTGGTACTGAGCTTCATC+AGG 0.410493 1_4:-55137491 Msa0170780:intron
ATCATTGAAAATGCTTGTTT+GGG 0.415652 1_4:-55137655 Msa0170780:CDS
CGTGAACATTGATTTGGAAC+TGG 0.422905 1_4:-55134567 Msa0170780:CDS
GTTTGGGTGAGGAGTCTCCT+TGG 0.425068 1_4:-55137591 Msa0170780:CDS
AATTCCGGGTTAAGCTTTGA+AGG 0.427673 1_4:+55136532 None:intergenic
GTCTCCCTTTGGAGAAGGTT+AGG 0.432291 1_4:-55134494 Msa0170780:CDS
GATATGAGGGAGAGTCTCTA+TGG 0.435839 1_4:-55134200 Msa0170780:CDS
TGTTGTCACTGGCTGATATG+AGG 0.437422 1_4:-55134214 Msa0170780:CDS
GTTCCACACCAAAGAATTCC+GGG 0.439461 1_4:+55136518 None:intergenic
GGTGAGGAGTCTCCTTGGGC+TGG 0.445832 1_4:-55137586 Msa0170780:CDS
TAGAAAGCTATATCATTCTT+CGG 0.460741 1_4:-55134120 Msa0170780:CDS
GTATGAGAGGAGTTTGGGTG+AGG 0.461310 1_4:-55137602 Msa0170780:CDS
AATTTATTGTAAACATCATC+CGG 0.467200 1_4:+55134374 None:intergenic
ATCAATGTTCACGATATCAT+AGG 0.469295 1_4:+55134577 None:intergenic
ATTATGTATGAGAGGAGTTT+GGG 0.471089 1_4:-55137607 Msa0170780:CDS
TCTTGATCTGCTGTGGCGGT+TGG 0.477152 1_4:+55134517 None:intergenic
AGAGAATATTCTACCCCTGT+TGG 0.478060 1_4:-55136563 Msa0170780:CDS
GCAGATCAAGAGTCTCCCTT+TGG 0.480598 1_4:-55134505 Msa0170780:CDS
GAGCAACACATTGCAATTTG+TGG 0.492207 1_4:-55137794 Msa0170780:CDS
TATATGGATAAAACTGAGAA+AGG 0.497499 1_4:-55135018 Msa0170780:CDS
TCTCTCTGGCAATGGCCACC+AGG 0.500332 1_4:-55137958 None:intergenic
CTGCTAGGAAGAAGTTGAAA+AGG 0.505819 1_4:-55134016 Msa0170780:CDS
GTTGCTCCATTCGAATCCAT+TGG 0.527285 1_4:+55137810 None:intergenic
GCTCAGTACCACACAAAAGC+TGG 0.530815 1_4:+55137500 None:intergenic
TGAGGATGATACTTCAATGC+TGG 0.532383 1_4:-55134962 Msa0170780:CDS
ATAGCCTAACCTTCTCCAAA+GGG 0.535931 1_4:+55134490 None:intergenic
CAAGAGTCTCCCTTTGGAGA+AGG 0.539649 1_4:-55134499 Msa0170780:CDS
TTTGTGGACACCCCAGAAGA+AGG 0.540799 1_4:-55137778 Msa0170780:CDS
GGTTTGGAGTGTTGATGAAG+TGG 0.545193 1_4:-55137524 Msa0170780:CDS
GTTGTCACTGGCTGATATGA+GGG 0.545553 1_4:-55134213 Msa0170780:CDS
GCTTCACTTACAGATCTGCC+AGG 0.550005 1_4:+55136419 None:intergenic
AGAAGTTAGCAGTGGAGCTG+AGG 0.554356 1_4:-55134923 Msa0170780:intron
TGATACTTCAATGCTGGAGA+TGG 0.557586 1_4:-55134956 Msa0170780:CDS
AACGGATATTCCTTCTTCTG+GGG 0.559930 1_4:+55137768 None:intergenic
ATTGAAAATGCTTGTTTGGG+TGG 0.566174 1_4:-55137652 Msa0170780:CDS
TAACCCGGAATTCTTTGGTG+TGG 0.569437 1_4:-55136521 Msa0170780:CDS
GTTTACGTGCATTCAAGCGA+TGG 0.570568 1_4:-55137840 Msa0170780:CDS
GTCTTCTAACAACGAATCTG+AGG 0.572955 1_4:-55135091 Msa0170780:CDS
CGGTTCTGCGTATCAGTGAA+AGG 0.574157 1_4:-55134100 Msa0170780:CDS
GTTGAAAAGGACAACAAAGA+GGG 0.577396 1_4:-55134003 Msa0170780:CDS
ATGATATCGAGGCATTAGAA+AGG 0.589395 1_4:-55134160 Msa0170780:CDS
AGAACCTTCAAAGCTTAACC+CGG 0.596675 1_4:-55136536 Msa0170780:CDS
GGGAGACTCTTGATCTGCTG+TGG 0.600462 1_4:+55134510 None:intergenic
AATAGCCTAACCTTCTCCAA+AGG 0.600517 1_4:+55134489 None:intergenic
TGAAGTCCAATGGATTCGAA+TGG 0.603454 1_4:-55137816 Msa0170780:CDS
CTTCACTTACAGATCTGCCA+GGG 0.605599 1_4:+55136420 None:intergenic
TTACTAATCTTAGCTCTGCT+AGG 0.608261 1_4:-55134031 Msa0170780:CDS
AAAGGCAAACATTCCTGTTG+AGG 0.608468 1_4:+55137547 None:intergenic
AGTTGAAAAGGACAACAAAG+AGG 0.608977 1_4:-55134004 Msa0170780:CDS
AAGCGATGGATGAAGTCCAA+TGG 0.611498 1_4:-55137826 Msa0170780:CDS
ATCGATAGAAGATGATATCG+AGG 0.611653 1_4:-55134171 Msa0170780:CDS
CTGTTGCTATTATGTATGAG+AGG 0.614081 1_4:-55137615 Msa0170780:CDS
ATGATAAAAGAAGTTAGCAG+TGG 0.615680 1_4:-55134931 Msa0170780:CDS
GGAGTATTCTTCAATTACTG+AGG 0.621581 1_4:-55134980 Msa0170780:CDS
ATTTGGAACTGGTACTTCAG+TGG 0.622999 1_4:-55134556 Msa0170780:CDS
AGACTCTTGATCTGCTGTGG+CGG 0.628471 1_4:+55134513 None:intergenic
AGCTGAAGATAACCAGCCCA+AGG 0.632130 1_4:+55137574 None:intergenic
TGAAATCAATGCAGGTGATG+TGG 0.648395 1_4:-55137734 Msa0170780:CDS
TCATCAACACTCCAAACCAA+AGG 0.650057 1_4:+55137529 None:intergenic
TTCGAGATAGATGATTACCA+TGG 0.653774 1_4:-55136457 Msa0170780:CDS
GTATTGTGTGAAATCAATGC+AGG 0.659600 1_4:-55137742 Msa0170780:CDS
TGAAGGTTCTGAATCCAACA+GGG 0.663792 1_4:+55136549 None:intergenic
AAAATAAGGAGTTCAATCTG+TGG 0.668743 1_4:+55134416 None:intergenic
ATTCAATCATAAAACTGGTG+CGG 0.668860 1_4:-55135136 Msa0170780:CDS
GGGGAACCATGCCAAAACCA+TGG 0.671012 1_4:+55136440 None:intergenic
TTCGTTGTTAGAAGACAAAG+CGG 0.673995 1_4:+55135098 None:intergenic
GAAAGGCGTTGATAGCGACA+TGG 0.674161 1_4:-55135001 Msa0170780:CDS
TTCACTTACAGATCTGCCAG+GGG 0.708708 1_4:+55136421 None:intergenic
GAAGGTTCTGAATCCAACAG+GGG 0.712164 1_4:+55136550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATGTATTATTG+AGG - chr1_4:55134478-55134497 Msa0170780:CDS 15.0%
!! ATTATTAAACAATACATGTA+TGG + chr1_4:55135862-55135881 None:intergenic 15.0%
!! AACATTTAAAAACTACAAAA+TGG + chr1_4:55137180-55137199 None:intergenic 15.0%
!! AGATGATGTATAATAAAATA+AGG + chr1_4:55137543-55137562 None:intergenic 15.0%
!!! AACTTTTGATAAGGAAAAAT+GGG + chr1_4:55134046-55134065 None:intergenic 20.0%
!!! AAACTTTTGATAAGGAAAAA+TGG + chr1_4:55134047-55134066 None:intergenic 20.0%
!!! TTTAGCATAAACTTTTGATA+AGG + chr1_4:55134055-55134074 None:intergenic 20.0%
!! CATTATGAGAGATTTATATT+TGG - chr1_4:55134507-55134526 Msa0170780:CDS 20.0%
!! TCAATAAAAAAAAAACAAGC+AGG + chr1_4:55134916-55134935 None:intergenic 20.0%
!! GGCATTAAACTAAAATTAAA+AGG + chr1_4:55134958-55134977 None:intergenic 20.0%
!! AGTAATAACTAGCAAATTAA+GGG + chr1_4:55135591-55135610 None:intergenic 20.0%
!! AAGTAATAACTAGCAAATTA+AGG + chr1_4:55135592-55135611 None:intergenic 20.0%
!!! AGTGTTTTTAACAATAACAA+TGG + chr1_4:55135631-55135650 None:intergenic 20.0%
!! GTGTATATTATCATTTATCA+TGG + chr1_4:55135803-55135822 None:intergenic 20.0%
!! ATGTTATACATTTGATAAGA+GGG + chr1_4:55135927-55135946 None:intergenic 20.0%
!! TATGTTATACATTTGATAAG+AGG + chr1_4:55135928-55135947 None:intergenic 20.0%
!! ATATGTTATTAGATTGTCAA+AGG - chr1_4:55136058-55136077 Msa0170780:intron 20.0%
!!! ATTTAAAGTGTTTGTATTCT+TGG - chr1_4:55136154-55136173 Msa0170780:intron 20.0%
!!! TTTAAAGTGTTTGTATTCTT+GGG - chr1_4:55136155-55136174 Msa0170780:intron 20.0%
!!! TTGAAGTCTTTTTAAGTTTA+AGG - chr1_4:55136290-55136309 Msa0170780:intron 20.0%
!!! ACCAATTTTTTTTATGTATC+TGG - chr1_4:55136316-55136335 Msa0170780:intron 20.0%
!! TCCAGATACATAAAAAAAAT+TGG + chr1_4:55136320-55136339 None:intergenic 20.0%
!!! GAATTGTTTTTAGTATTACT+CGG + chr1_4:55136421-55136440 None:intergenic 20.0%
!! GAGTAATACTAAAAACAATT+CGG - chr1_4:55136420-55136439 Msa0170780:intron 20.0%
!! AGTAATACTAAAAACAATTC+GGG - chr1_4:55136421-55136440 Msa0170780:intron 20.0%
!!! TTTTTTTTTTTAACTTCCAC+TGG - chr1_4:55137080-55137099 Msa0170780:intron 20.0%
!! AAATAAATATATGCTATCTG+AGG + chr1_4:55137145-55137164 None:intergenic 20.0%
!! TATTAAATACCTGTATCAAA+TGG + chr1_4:55137282-55137301 None:intergenic 20.0%
!! ATACAGGTATTTAATACTTA+CGG - chr1_4:55137286-55137305 Msa0170780:intron 20.0%
!!! ATTATACATCATCTTTTTAC+CGG - chr1_4:55137549-55137568 Msa0170780:CDS 20.0%
!! AATTTATTGTAAACATCATC+CGG + chr1_4:55137571-55137590 None:intergenic 20.0%
! GATTTCACACAATACTTTAA+CGG + chr1_4:55134195-55134214 None:intergenic 25.0%
! ATCATTGAAAATGCTTGTTT+GGG - chr1_4:55134287-55134306 Msa0170780:CDS 25.0%
! GAGATTTATATTTGGACTAA+TGG - chr1_4:55134515-55134534 Msa0170780:CDS 25.0%
! ACTTATATGATAAGCGTTTA+TGG - chr1_4:55134802-55134821 Msa0170780:intron 25.0%
!! AAGAAAACTTTTAGTCTGTT+TGG + chr1_4:55134857-55134876 None:intergenic 25.0%
! CAAAAGTCAAATGAATTACA+GGG + chr1_4:55134979-55134998 None:intergenic 25.0%
! TTCATAATATGAAAGCTTCA+AGG + chr1_4:55135015-55135034 None:intergenic 25.0%
! TCACAATTATATCCATTGAA+AGG - chr1_4:55135126-55135145 Msa0170780:CDS 25.0%
! CACAATTATATCCATTGAAA+GGG - chr1_4:55135127-55135146 Msa0170780:CDS 25.0%
!! ATTTTTAAACTCCCTTTCAA+TGG + chr1_4:55135141-55135160 None:intergenic 25.0%
! TTGAAAGGGAGTTTAAAAAT+TGG - chr1_4:55135141-55135160 Msa0170780:intron 25.0%
!! GATCAGAAAATTTTCACAAA+AGG + chr1_4:55135300-55135319 None:intergenic 25.0%
! GTAATAACTAGCAAATTAAG+GGG + chr1_4:55135590-55135609 None:intergenic 25.0%
! AATGATAATATACACTGTCT+TGG - chr1_4:55135808-55135827 Msa0170780:intron 25.0%
!!! CGTTTCATTATGACATTTTT+TGG - chr1_4:55136007-55136026 Msa0170780:intron 25.0%
!!! TTCATTATGACATTTTTTGG+AGG - chr1_4:55136010-55136029 Msa0170780:intron 25.0%
!!! TCATTATGACATTTTTTGGA+GGG - chr1_4:55136011-55136030 Msa0170780:intron 25.0%
!!! TCAATACGTTTTAAAACTAC+TGG - chr1_4:55136112-55136131 Msa0170780:intron 25.0%
!!! AGTCTTATATGATGATTTTG+AGG - chr1_4:55136260-55136279 Msa0170780:intron 25.0%
! TAGGATTAAAAAAACTGCAA+TGG - chr1_4:55136364-55136383 Msa0170780:intron 25.0%
! GTAATACTAAAAACAATTCG+GGG - chr1_4:55136422-55136441 Msa0170780:intron 25.0%
! ATTCTTCTGTTCTTAATTGT+TGG + chr1_4:55136475-55136494 None:intergenic 25.0%
!!! ATTTCTGTTCAGTTTTGATT+CGG + chr1_4:55136538-55136557 None:intergenic 25.0%
! AGTTATATTAGTCAGTTAGA+GGG + chr1_4:55136681-55136700 None:intergenic 25.0%
! TAGTTATATTAGTCAGTTAG+AGG + chr1_4:55136682-55136701 None:intergenic 25.0%
! ACTGTTAGAATAAATCAGTA+GGG + chr1_4:55136735-55136754 None:intergenic 25.0%
!!! TTTCTCAGTTTTATCCATAT+AGG + chr1_4:55136925-55136944 None:intergenic 25.0%
! TATATGGATAAAACTGAGAA+AGG - chr1_4:55136924-55136943 Msa0170780:intron 25.0%
!! CATTATAGTTTTCTTTGACA+TGG - chr1_4:55137241-55137260 Msa0170780:intron 25.0%
! TACAGGTATTTAATACTTAC+GGG - chr1_4:55137287-55137306 Msa0170780:intron 25.0%
! ATTTAATACTTACGGGATAT+TGG - chr1_4:55137294-55137313 Msa0170780:intron 25.0%
! TTTAATACTTACGGGATATT+GGG - chr1_4:55137295-55137314 Msa0170780:intron 25.0%
! TATTTCGAGATATCATTTGA+TGG - chr1_4:55137499-55137518 Msa0170780:CDS 25.0%
! GATATCATCATTCAAAAAAG+TGG + chr1_4:55137644-55137663 None:intergenic 25.0%
! TAGAAAGCTATATCATTCTT+CGG - chr1_4:55137822-55137841 Msa0170780:CDS 25.0%
!! CATAATTTCTGAGTTTTTGA+AGG + chr1_4:55137873-55137892 None:intergenic 25.0%
ATTGTAAGACAAGCTTTCTT+TGG + chr1_4:55134245-55134264 None:intergenic 30.0%
GATCATTGAAAATGCTTGTT+TGG - chr1_4:55134286-55134305 Msa0170780:CDS 30.0%
TATTATGTATGAGAGGAGTT+TGG - chr1_4:55134334-55134353 Msa0170780:CDS 30.0%
ATTATGTATGAGAGGAGTTT+GGG - chr1_4:55134335-55134354 Msa0170780:CDS 30.0%
TGGAACTATGACAATGTAAT+AGG - chr1_4:55134535-55134554 Msa0170780:CDS 30.0%
GGAACTATGACAATGTAATA+GGG - chr1_4:55134536-55134555 Msa0170780:CDS 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr1_4:55134679-55134698 None:intergenic 30.0%
GCAAAAGTCAAATGAATTAC+AGG + chr1_4:55134980-55134999 None:intergenic 30.0%
!!! TTTCTCGACTCTTCTTTTTT+AGG - chr1_4:55135228-55135247 Msa0170780:intron 30.0%
TTCTGATCTCTTATCATTGT+AGG - chr1_4:55135312-55135331 Msa0170780:intron 30.0%
! AGATAAAGCTTTTGTCTATG+AGG - chr1_4:55135349-55135368 Msa0170780:intron 30.0%
! TCGAGAAGAAATAAGACTTT+TGG + chr1_4:55135462-55135481 None:intergenic 30.0%
! ATAGATGATTACCATGGTTT+TGG - chr1_4:55135491-55135510 Msa0170780:intron 30.0%
TAATGACTTGAGTTCATCTA+TGG + chr1_4:55135657-55135676 None:intergenic 30.0%
GAAGAATCTTCATGCATATT+TGG + chr1_4:55135714-55135733 None:intergenic 30.0%
!! TGTATGGACTAGTAAAACTA+TGG + chr1_4:55135846-55135865 None:intergenic 30.0%
CATTCAATAGATTACAACCT+TGG + chr1_4:55136038-55136057 None:intergenic 30.0%
TATGATCAAGCTACGTTAAT+TGG + chr1_4:55136088-55136107 None:intergenic 30.0%
! ACTGGTGTATACTATTTTGT+TGG - chr1_4:55136130-55136149 Msa0170780:intron 30.0%
TTCTTGGGATTTCAAGAAAA+AGG - chr1_4:55136170-55136189 Msa0170780:intron 30.0%
GGATTTCAAGAAAAAGGTTA+TGG - chr1_4:55136176-55136195 Msa0170780:intron 30.0%
! TAGCTTGCAATTAGTTATCT+TGG - chr1_4:55136213-55136232 Msa0170780:intron 30.0%
! AGTTATCTTGGTGGTTTAAA+TGG - chr1_4:55136225-55136244 Msa0170780:intron 30.0%
TGGTTTAAATGGAAGAACTA+AGG - chr1_4:55136236-55136255 Msa0170780:intron 30.0%
! ATGTTGTATGTGGTTTGTAT+AGG - chr1_4:55136345-55136364 Msa0170780:intron 30.0%
TTAGTATTACTCGGTTAGAT+TGG + chr1_4:55136412-55136431 None:intergenic 30.0%
GAGAAATAGAAAAAACAAGC+AGG - chr1_4:55136500-55136519 Msa0170780:CDS 30.0%
! AAGATAAAACTTTTGCGAAG+AGG + chr1_4:55136595-55136614 None:intergenic 30.0%
ATAGAGGGAAATCAAAATAG+AGG + chr1_4:55136651-55136670 None:intergenic 30.0%
TTAGAGGGGATATAAATAGA+GGG + chr1_4:55136666-55136685 None:intergenic 30.0%
GTTATATTAGTCAGTTAGAG+GGG + chr1_4:55136680-55136699 None:intergenic 30.0%
CACTGTTAGAATAAATCAGT+AGG + chr1_4:55136736-55136755 None:intergenic 30.0%
!! CTACTGATTTATTCTAACAG+TGG - chr1_4:55136734-55136753 Msa0170780:intron 30.0%
TCCAGATTCAATCATAAAAC+TGG - chr1_4:55136801-55136820 Msa0170780:intron 30.0%
!! ACCAGTTTTATGATTGAATC+TGG + chr1_4:55136805-55136824 None:intergenic 30.0%
ATTCAATCATAAAACTGGTG+CGG - chr1_4:55136806-55136825 Msa0170780:intron 30.0%
ACTAGCTCAAAATTCCTATA+TGG - chr1_4:55136908-55136927 Msa0170780:intron 30.0%
ATGATAAAAGAAGTTAGCAG+TGG - chr1_4:55137011-55137030 Msa0170780:intron 30.0%
GTATCAAATGGAAGAATAAG+AGG + chr1_4:55137270-55137289 None:intergenic 30.0%
CTTATTCTTCCATTTGATAC+AGG - chr1_4:55137270-55137289 Msa0170780:intron 30.0%
ATCAATGTTCACGATATCAT+AGG + chr1_4:55137368-55137387 None:intergenic 30.0%
! TGATATCGTGAACATTGATT+TGG - chr1_4:55137369-55137388 Msa0170780:intron 30.0%
! CTCGAAATATTCAGAGTTTT+CGG + chr1_4:55137488-55137507 None:intergenic 30.0%
AAAATAAGGAGTTCAATCTG+TGG + chr1_4:55137529-55137548 None:intergenic 30.0%
!! TGATAAGGAAAAATGGGTTG+TGG + chr1_4:55134040-55134059 None:intergenic 35.0%
! TAACGGATATTCCTTCTTCT+GGG + chr1_4:55134178-55134197 None:intergenic 35.0%
! TTAACGGATATTCCTTCTTC+TGG + chr1_4:55134179-55134198 None:intergenic 35.0%
GTATTGTGTGAAATCAATGC+AGG - chr1_4:55134200-55134219 Msa0170780:CDS 35.0%
ATTGAAAATGCTTGTTTGGG+TGG - chr1_4:55134290-55134309 Msa0170780:CDS 35.0%
! CTGTTGCTATTATGTATGAG+AGG - chr1_4:55134327-55134346 Msa0170780:CDS 35.0%
! TGTTTGTTGATTGCGAGTAA+AGG - chr1_4:55134562-55134581 Msa0170780:CDS 35.0%
! GTTTGTTGATTGCGAGTAAA+GGG - chr1_4:55134563-55134582 Msa0170780:CDS 35.0%
GAGTAAAGGGTTGTTTGTAT+TGG - chr1_4:55134576-55134595 Msa0170780:CDS 35.0%
GACATAAACATTTGTGAGAC+TGG - chr1_4:55134619-55134638 Msa0170780:CDS 35.0%
TTCAAAGAGCTTATGGAAAC+AGG - chr1_4:55134642-55134661 Msa0170780:CDS 35.0%
GCGATATACTTGTGTGAAAA+TGG - chr1_4:55134881-55134900 Msa0170780:intron 35.0%
! ATGCACTTTTCAATGAACCT+CGG + chr1_4:55135087-55135106 None:intergenic 35.0%
AAAAATTGGCAGAAGAGACA+AGG - chr1_4:55135155-55135174 Msa0170780:intron 35.0%
TTCGAGATAGATGATTACCA+TGG - chr1_4:55135485-55135504 Msa0170780:intron 35.0%
! CCATTCAGAATCCTTTTCTT+CGG - chr1_4:55135764-55135783 Msa0170780:intron 35.0%
! CTTTTACTTCTCCGAAGAAA+AGG + chr1_4:55135778-55135797 None:intergenic 35.0%
! ATTTGTTCTTTTGCAGTTGC+AGG + chr1_4:55135983-55136002 None:intergenic 35.0%
CTTGCAATTAGTTATCTTGG+TGG - chr1_4:55136216-55136235 Msa0170780:intron 35.0%
!!! AGTTTTGATTCGGCGATAAA+AGG + chr1_4:55136528-55136547 None:intergenic 35.0%
GTTAGAGGGGATATAAATAG+AGG + chr1_4:55136667-55136686 None:intergenic 35.0%
AAATCAGTAGGGCAGAATAA+GGG + chr1_4:55136724-55136743 None:intergenic 35.0%
TAAATCAGTAGGGCAGAATA+AGG + chr1_4:55136725-55136744 None:intergenic 35.0%
TTCGTTGTTAGAAGACAAAG+CGG + chr1_4:55136847-55136866 None:intergenic 35.0%
! GGAGTATTCTTCAATTACTG+AGG - chr1_4:55136962-55136981 Msa0170780:intron 35.0%
AAGAGTAGAAGAGTGACTAT+TGG + chr1_4:55137212-55137231 None:intergenic 35.0%
! CAAAGCATCACAAACTTCTT+TGG + chr1_4:55137710-55137729 None:intergenic 35.0%
ATCGATAGAAGATGATATCG+AGG - chr1_4:55137771-55137790 Msa0170780:CDS 35.0%
! ATGATATCGAGGCATTAGAA+AGG - chr1_4:55137782-55137801 Msa0170780:CDS 35.0%
!! TTACTAATCTTAGCTCTGCT+AGG - chr1_4:55137911-55137930 Msa0170780:intron 35.0%
AGTTGAAAAGGACAACAAAG+AGG - chr1_4:55137938-55137957 Msa0170780:intron 35.0%
GTTGAAAAGGACAACAAAGA+GGG - chr1_4:55137939-55137958 Msa0170780:intron 35.0%
! TGAAGTCCAATGGATTCGAA+TGG - chr1_4:55134126-55134145 Msa0170780:CDS 40.0%
GAGCAACACATTGCAATTTG+TGG - chr1_4:55134148-55134167 Msa0170780:CDS 40.0%
AACGGATATTCCTTCTTCTG+GGG + chr1_4:55134177-55134196 None:intergenic 40.0%
TGAAATCAATGCAGGTGATG+TGG - chr1_4:55134208-55134227 Msa0170780:CDS 40.0%
TGCTTGTTTGGGTGGTTATT+TGG - chr1_4:55134298-55134317 Msa0170780:CDS 40.0%
GCTTGTTTGGGTGGTTATTT+GGG - chr1_4:55134299-55134318 Msa0170780:CDS 40.0%
AAAGGCAAACATTCCTGTTG+AGG + chr1_4:55134398-55134417 None:intergenic 40.0%
TCAACAGGAATGTTTGCCTT+TGG - chr1_4:55134397-55134416 Msa0170780:CDS 40.0%
AGGAATGTTTGCCTTTGGTT+TGG - chr1_4:55134402-55134421 Msa0170780:CDS 40.0%
TCATCAACACTCCAAACCAA+AGG + chr1_4:55134416-55134435 None:intergenic 40.0%
! AGACTGGTTCAAAGAGCTTA+TGG - chr1_4:55134635-55134654 Msa0170780:CDS 40.0%
! TGCACTTTTCAATGAACCTC+GGG + chr1_4:55135086-55135105 None:intergenic 40.0%
! AAGCTTTTGTCTATGAGGAC+TGG - chr1_4:55135354-55135373 Msa0170780:intron 40.0%
AGAGAATATTCTACCCCTGT+TGG - chr1_4:55135379-55135398 Msa0170780:intron 40.0%
!! TGAAGGTTCTGAATCCAACA+GGG + chr1_4:55135396-55135415 None:intergenic 40.0%
!! TTGAAGGTTCTGAATCCAAC+AGG + chr1_4:55135397-55135416 None:intergenic 40.0%
AGAACCTTCAAAGCTTAACC+CGG - chr1_4:55135406-55135425 Msa0170780:intron 40.0%
! AATTCCGGGTTAAGCTTTGA+AGG + chr1_4:55135413-55135432 None:intergenic 40.0%
AAGCTTAACCCGGAATTCTT+TGG - chr1_4:55135416-55135435 Msa0170780:intron 40.0%
TGTTCCACACCAAAGAATTC+CGG + chr1_4:55135428-55135447 None:intergenic 40.0%
!!! TGATTACCATGGTTTTGGCA+TGG - chr1_4:55135496-55135515 Msa0170780:intron 40.0%
AGAACCATAGTAATCACCAG+AGG + chr1_4:55135548-55135567 None:intergenic 40.0%
CCGAAGAAAAGGATTCTGAA+TGG + chr1_4:55135767-55135786 None:intergenic 40.0%
CTGGAAAGCAATGTTGTATG+TGG - chr1_4:55136335-55136354 Msa0170780:intron 40.0%
TGAGAATAGAATTCTCCCCA+AGG - chr1_4:55136558-55136577 Msa0170780:CDS 40.0%
TCTGGAGAAGACAGTGTTAT+AGG + chr1_4:55136787-55136806 None:intergenic 40.0%
GTCTTCTAACAACGAATCTG+AGG - chr1_4:55136851-55136870 Msa0170780:intron 40.0%
TGAGGATGATACTTCAATGC+TGG - chr1_4:55136980-55136999 Msa0170780:intron 40.0%
TGATACTTCAATGCTGGAGA+TGG - chr1_4:55136986-55137005 Msa0170780:intron 40.0%
AACACAGACACGTAGATGAA+AGG + chr1_4:55137055-55137074 None:intergenic 40.0%
! GCTGCTTTGCTACATAGATA+TGG - chr1_4:55137322-55137341 Msa0170780:intron 40.0%
!! CGTGAACATTGATTTGGAAC+TGG - chr1_4:55137375-55137394 Msa0170780:intron 40.0%
! ATTTGGAACTGGTACTTCAG+TGG - chr1_4:55137386-55137405 Msa0170780:intron 40.0%
ATAGCCTAACCTTCTCCAAA+GGG + chr1_4:55137455-55137474 None:intergenic 40.0%
AATAGCCTAACCTTCTCCAA+AGG + chr1_4:55137456-55137475 None:intergenic 40.0%
! TTGTGATGCTTTGTTGTCAC+TGG - chr1_4:55137717-55137736 Msa0170780:CDS 40.0%
CTGCTAGGAAGAAGTTGAAA+AGG - chr1_4:55137926-55137945 Msa0170780:intron 40.0%
GTTTACGTGCATTCAAGCGA+TGG - chr1_4:55134102-55134121 Msa0170780:CDS 45.0%
AAGCGATGGATGAAGTCCAA+TGG - chr1_4:55134116-55134135 Msa0170780:CDS 45.0%
GTTGCTCCATTCGAATCCAT+TGG + chr1_4:55134135-55134154 None:intergenic 45.0%
! TCTTCAGCTTTTGCCTCAAC+AGG - chr1_4:55134382-55134401 Msa0170780:CDS 45.0%
!! GGTTTGGAGTGTTGATGAAG+TGG - chr1_4:55134418-55134437 Msa0170780:CDS 45.0%
!! GAAGGTTCTGAATCCAACAG+GGG + chr1_4:55135395-55135414 None:intergenic 45.0%
TAACCCGGAATTCTTTGGTG+TGG - chr1_4:55135421-55135440 Msa0170780:intron 45.0%
GTTCCACACCAAAGAATTCC+GGG + chr1_4:55135427-55135446 None:intergenic 45.0%
TTCACTTACAGATCTGCCAG+GGG + chr1_4:55135524-55135543 None:intergenic 45.0%
CTTCACTTACAGATCTGCCA+GGG + chr1_4:55135525-55135544 None:intergenic 45.0%
AGATCTGTAAGTGAAGCCTC+TGG - chr1_4:55135529-55135548 Msa0170780:intron 45.0%
GAAGCCTCTGGTGATTACTA+TGG - chr1_4:55135541-55135560 Msa0170780:intron 45.0%
CTTGCAGCACATGGTTATCA+AGG + chr1_4:55135960-55135979 None:intergenic 45.0%
!!! GACATTTTTTGGAGGGTCCA+AGG - chr1_4:55136018-55136037 Msa0170780:intron 45.0%
TTTGCGAAGAGGAAACCCTT+GGG + chr1_4:55136584-55136603 None:intergenic 45.0%
! TTTTGCGAAGAGGAAACCCT+TGG + chr1_4:55136585-55136604 None:intergenic 45.0%
GACTGATCATCACTTTCCAG+TGG + chr1_4:55137099-55137118 None:intergenic 45.0%
!!! TTCAGAGTTTTCGGTGTCAC+TGG + chr1_4:55137479-55137498 None:intergenic 45.0%
! TGTTGTCACTGGCTGATATG+AGG - chr1_4:55137728-55137747 Msa0170780:CDS 45.0%
! GTTGTCACTGGCTGATATGA+GGG - chr1_4:55137729-55137748 Msa0170780:CDS 45.0%
GATATGAGGGAGAGTCTCTA+TGG - chr1_4:55137742-55137761 Msa0170780:CDS 45.0%
!! AATAATAATAATAATAATTG+TGG - chr1_4:55135879-55135898 Msa0170780:intron 5.0%
GTGTAAACATGCGTACCTGG+TGG + chr1_4:55134002-55134021 None:intergenic 50.0%
GAGGTGTAAACATGCGTACC+TGG + chr1_4:55134005-55134024 None:intergenic 50.0%
GTTGTGGCGAAAATCGAGAG+AGG + chr1_4:55134024-55134043 None:intergenic 50.0%
TTTGTGGACACCCCAGAAGA+AGG - chr1_4:55134164-55134183 Msa0170780:CDS 50.0%
GTATGAGAGGAGTTTGGGTG+AGG - chr1_4:55134340-55134359 Msa0170780:CDS 50.0%
TTTGGGTGAGGAGTCTCCTT+GGG - chr1_4:55134352-55134371 Msa0170780:CDS 50.0%
AGCTGAAGATAACCAGCCCA+AGG + chr1_4:55134371-55134390 None:intergenic 50.0%
! GAAGTGGACCAGCTTTTGTG+TGG - chr1_4:55134434-55134453 Msa0170780:CDS 50.0%
GCTCAGTACCACACAAAAGC+TGG + chr1_4:55134445-55134464 None:intergenic 50.0%
! GTGTGGTACTGAGCTTCATC+AGG - chr1_4:55134451-55134470 Msa0170780:CDS 50.0%
! CTCTGCATTTTCTATGCCCG+AGG - chr1_4:55135067-55135086 Msa0170780:CDS 50.0%
GCTTCACTTACAGATCTGCC+AGG + chr1_4:55135526-55135545 None:intergenic 50.0%
!! GAAAGGCGTTGATAGCGACA+TGG - chr1_4:55136941-55136960 Msa0170780:intron 50.0%
AGAAGTTAGCAGTGGAGCTG+AGG - chr1_4:55137019-55137038 Msa0170780:intron 50.0%
AGACTCTTGATCTGCTGTGG+CGG + chr1_4:55137432-55137451 None:intergenic 50.0%
GCAGATCAAGAGTCTCCCTT+TGG - chr1_4:55137437-55137456 Msa0170780:intron 50.0%
! CAAGAGTCTCCCTTTGGAGA+AGG - chr1_4:55137443-55137462 Msa0170780:intron 50.0%
! GTCTCCCTTTGGAGAAGGTT+AGG - chr1_4:55137448-55137467 Msa0170780:intron 50.0%
CGGTTCTGCGTATCAGTGAA+AGG - chr1_4:55137842-55137861 Msa0170780:CDS 50.0%
GTTTGGGTGAGGAGTCTCCT+TGG - chr1_4:55134351-55134370 Msa0170780:CDS 55.0%
GGGGAACCATGCCAAAACCA+TGG + chr1_4:55135505-55135524 None:intergenic 55.0%
!!! TGGTTTTGGCATGGTTCCCC+TGG - chr1_4:55135505-55135524 Msa0170780:intron 55.0%
AGTTGCAGGCTTGCAGCACA+TGG + chr1_4:55135969-55135988 None:intergenic 55.0%
AGAATTCTCCCCAAGGCCCA+AGG - chr1_4:55136565-55136584 Msa0170780:CDS 55.0%
GAATTCTCCCCAAGGCCCAA+GGG - chr1_4:55136566-55136585 Msa0170780:CDS 55.0%
AGAGGAAACCCTTGGGCCTT+GGG + chr1_4:55136577-55136596 None:intergenic 55.0%
AAGAGGAAACCCTTGGGCCT+TGG + chr1_4:55136578-55136597 None:intergenic 55.0%
TCTTGATCTGCTGTGGCGGT+TGG + chr1_4:55137428-55137447 None:intergenic 55.0%
GGGAGACTCTTGATCTGCTG+TGG + chr1_4:55137435-55137454 None:intergenic 55.0%
GAGGAAACCCTTGGGCCTTG+GGG + chr1_4:55136576-55136595 None:intergenic 60.0%
GGTGAGGAGTCTCCTTGGGC+TGG - chr1_4:55134356-55134375 Msa0170780:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55133995 55137969 55133995 ID=Msa0170780;Name=Msa0170780
chr1_4 mRNA 55133995 55137969 55133995 ID=Msa0170780-mRNA-1;Parent=Msa0170780;Name=Msa0170780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.25|0.2|0.8|1|1|5|0|497
chr1_4 exon 55137959 55137969 55137959 ID=Msa0170780-mRNA-1:exon:16480;Parent=Msa0170780-mRNA-1
chr1_4 exon 55137492 55137864 55137492 ID=Msa0170780-mRNA-1:exon:16479;Parent=Msa0170780-mRNA-1
chr1_4 exon 55136430 55136626 55136430 ID=Msa0170780-mRNA-1:exon:16478;Parent=Msa0170780-mRNA-1
chr1_4 exon 55134924 55135158 55134924 ID=Msa0170780-mRNA-1:exon:16477;Parent=Msa0170780-mRNA-1
chr1_4 exon 55133995 55134672 55133995 ID=Msa0170780-mRNA-1:exon:16476;Parent=Msa0170780-mRNA-1
chr1_4 CDS 55137959 55137969 55137959 ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1
chr1_4 CDS 55137492 55137864 55137492 ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1
chr1_4 CDS 55136430 55136626 55136430 ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1
chr1_4 CDS 55134924 55135158 55134924 ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1
chr1_4 CDS 55133995 55134672 55133995 ID=Msa0170780-mRNA-1:cds;Parent=Msa0170780-mRNA-1
Gene Sequence

>Msa0170780

ATGGCCACCAGACGTTTACGTGCATTCAAGCGATGGATGAAGTCCAATGGATTCGAATGGAGCAACACATTGCAATTTGTGGACACCCCAGAAGAAGGAATATCCGTTAAAGTATTGTGTGAAATCAATGCAGGTGATGTGGTTGCTAAAATGCCAAAGAAAGCTTGTCTTACAATCAAGACTAGTAGTGCTTGTGAGATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTTTAGCTGTTGCTATTATGTATGAGAGGAGTTTGGGTGAGGAGTCTCCTTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGAGTGTTGATGAAGTGGACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGATAAAGCTTTTGTCTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCCGGAATTCTTTGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTCGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACTGGTGCGGAAGATGTGCATTTCACCGCTTTGTCTTCTAACAACGAATCTGAGGATGACGCTGATGACGAAAGTGTTGATGAAGAAGCACTAGCTCAAAATTCCTATATGGATAAAACTGAGAAAGGCGTTGATAGCGACATGGAGTATTCTTCAATTACTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAAGAAGTTAGCAGTGGAGCTGAGGTATTTAATACTTACGGGATATTGGGTAATGCTGCTTTGCTACATAGATATGGATTTACTGAGCAAGATAACACCTATGATATCGTGAACATTGATTTGGAACTGGTACTTCAGTGGTGTTCTTCTTTGTTCTCCAACCGCCACAGCAGATCAAGAGTCTCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACACCGAAAACTCTGAATATTTCGAGATATCATTTGATGGAGAACCACAGATTGAACTCCTTATTTTATTATACATCATCTTTTTACCGGATGATGTTTACAATAAATTAGATTTATCAGTAGCAGTTGCTGAGAATTGTCATGAATCAAGTGAAAAAACCACTTTTTTGAATGATGATATCTTTCTAAAGAAGCTGTCTAATATGAGCAAGAAAACTTTGATGACCAAAGAAGTTTGTGATGCTTTGTTGTCACTGGCTGATATGAGGGAGAGTCTCTATGGTTTGAAATCGATAGAAGATGATATCGAGGCATTAGAAAGGTGTAGTTTTGTTAGAGATAGAAAGCTATATCATTCTTCGGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTTAAAGTCGTGTAAGATTACTAATCTTAGCTCTGCTAGGAAGAAGTTGAAAAGGACAACAAAGAGGGAGAGTTGA

Protein sequence

>Msa0170780

MATRRLRAFKRWMKSNGFEWSNTLQFVDTPEEGISVKVLCEINAGDVVAKMPKKACLTIKTSSACEIIENACLGGYLGLAVAIMYERSLGEESPWAGYLQLLPQQECLPLVWSVDEVDQLLCGTELHQTVQEDKAFVYEDWKENILPLLDSEPSKLNPEFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNNESEDDADDESVDEEALAQNSYMDKTEKGVDSDMEYSSITEDDTSMLEMVMIKEVSSGAEVFNTYGILGNAALLHRYGFTEQDNTYDIVNIDLELVLQWCSSLFSNRHSRSRVSLWRRLGYSSDTENSEYFEISFDGEPQIELLILLYIIFLPDDVYNKLDLSVAVAENCHESSEKTTFLNDDIFLKKLSNMSKKTLMTKEVCDALLSLADMRESLYGLKSIEDDIEALERCSFVRDRKLYHSSVLRISERKILQKLRNYALKSCKITNLSSARKKLKRTTKRES*