AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171050 MtrunA17_Chr5g0418191 58.278 151 53 1 4 144 262 412 2.90e-55 179
Msa0171050 MtrunA17_Chr5g0418191 55.000 60 26 1 62 121 151 209 3.02e-16 74.3
Msa0171050 MtrunA17_Chr1g0188971 87.805 82 10 0 1 82 1 82 2.16e-48 150
Msa0171050 MtrunA17_Chr1g0188941 76.042 96 23 0 29 124 18 113 4.16e-48 151
Msa0171050 MtrunA17_Chr4g0042831 55.814 129 53 2 4 132 224 348 6.50e-44 148
Msa0171050 MtrunA17_Chr4g0042831 46.914 81 42 1 42 121 124 204 7.73e-16 73.2
Msa0171050 MtrunA17_Chr7g0218081 53.333 135 62 1 4 138 353 486 1.41e-42 147
Msa0171050 MtrunA17_Chr7g0218081 56.452 62 22 2 62 121 228 286 3.25e-15 71.6
Msa0171050 MtrunA17_Chr1g0188961 85.507 69 6 1 82 150 3 67 2.86e-36 119
Msa0171050 MtrunA17_Chr3g0101131 54.167 120 47 2 12 131 373 484 3.14e-36 130
Msa0171050 MtrunA17_Chr3g0101131 45.205 73 39 1 49 121 230 301 1.21e-14 70.1
Msa0171050 MtrunA17_Chr3g0079691 52.846 123 47 1 11 133 455 566 4.09e-36 131
Msa0171050 MtrunA17_Chr3g0079691 51.667 60 28 1 62 121 280 338 1.63e-13 66.6
Msa0171050 MtrunA17_Chr5g0445311 65.882 85 29 0 47 131 349 433 6.73e-35 127
Msa0171050 MtrunA17_Chr5g0445311 50.000 60 29 1 62 121 200 258 1.94e-13 66.6
Msa0171050 MtrunA17_Chr7g0243891 57.426 101 43 0 23 123 335 435 6.33e-34 124
Msa0171050 MtrunA17_Chr7g0243891 56.452 62 26 1 62 123 216 276 1.87e-17 78.2
Msa0171050 MtrunA17_Chr4g0004911 68.354 79 25 0 43 121 317 395 8.59e-34 123
Msa0171050 MtrunA17_Chr4g0004911 47.561 82 41 1 40 121 164 243 2.44e-17 77.8
Msa0171050 MtrunA17_Chr3g0106491 64.706 85 30 0 38 122 341 425 7.81e-33 120
Msa0171050 MtrunA17_Chr3g0106491 47.436 78 36 2 46 123 186 258 4.49e-18 79.7
Msa0171050 MtrunA17_Chr5g0432161 53.600 125 48 4 10 130 372 490 8.44e-33 121
Msa0171050 MtrunA17_Chr5g0432161 55.000 60 26 1 62 121 244 302 9.08e-17 75.9
Msa0171050 MtrunA17_Chr7g0249311 57.609 92 39 0 43 134 373 464 3.79e-31 117
Msa0171050 MtrunA17_Chr7g0249311 51.613 62 29 1 62 123 179 239 3.91e-14 68.6
Msa0171050 MtrunA17_Chr7g0249301 60.494 81 32 0 43 123 273 353 9.07e-30 111
Msa0171050 MtrunA17_Chr7g0249301 51.562 64 28 2 61 123 61 122 1.90e-14 69.3
Msa0171050 MtrunA17_Chr4g0051881 51.546 97 43 1 48 140 164 260 5.64e-29 108
Msa0171050 MtrunA17_Chr1g0194481 53.947 76 35 0 47 122 143 218 5.39e-27 102
Msa0171050 MtrunA17_Chr5g0443131 53.247 77 36 0 48 124 143 219 2.18e-26 100
Msa0171050 MtrunA17_Chr3g0129361 51.765 85 41 0 47 131 129 213 1.01e-24 94.7
Msa0171050 MtrunA17_Chr7g0263531 48.837 86 44 0 36 121 335 420 1.83e-24 97.4
Msa0171050 MtrunA17_Chr7g0263531 44.318 88 47 2 63 149 190 276 4.04e-16 73.9
Msa0171050 MtrunA17_Chr7g0270191 50.633 79 39 0 43 121 126 204 2.65e-24 95.1
Msa0171050 MtrunA17_Chr2g0294231 51.948 77 37 0 47 123 188 264 3.76e-24 95.9
Msa0171050 MtrunA17_Chr5g0418781 46.939 98 39 2 47 140 109 197 1.19e-23 93.2
Msa0171050 MtrunA17_Chr8g0335811 55.263 76 34 0 43 118 135 210 5.14e-23 90.5
Msa0171050 MtrunA17_Chr8g0383351 49.438 89 44 1 47 134 144 232 5.83e-23 90.5
Msa0171050 MtrunA17_Chr1g0150801 49.351 77 39 0 42 118 82 158 1.00e-22 88.2
Msa0171050 MtrunA17_Chr5g0447701 50.000 76 38 0 47 122 237 312 7.50e-22 89.7
Msa0171050 MtrunA17_Chr8g0383251 49.315 73 37 0 49 121 95 167 8.96e-22 86.3
Msa0171050 MtrunA17_Chr3g0129321 38.793 116 64 2 6 121 69 177 2.91e-21 85.5
Msa0171050 MtrunA17_Chr4g0074001 42.453 106 58 3 17 121 315 418 4.48e-21 88.2
Msa0171050 MtrunA17_Chr7g0270831 48.235 85 42 2 49 131 203 287 4.55e-21 88.2
Msa0171050 MtrunA17_Chr7g0224801 48.101 79 40 1 54 131 85 163 6.37e-21 83.6
Msa0171050 MtrunA17_Chr4g0051181 39.316 117 62 4 7 121 194 303 1.62e-20 86.7
Msa0171050 MtrunA17_Chr4g0068541 47.368 76 40 0 49 124 195 270 4.12e-20 85.1
Msa0171050 MtrunA17_Chr8g0386241 50.000 70 35 0 54 123 95 164 1.23e-19 80.5
Msa0171050 MtrunA17_Chr4g0060271 54.839 62 27 1 61 121 254 315 2.48e-19 83.6
Msa0171050 MtrunA17_Chr4g0025051 35.211 142 82 4 12 147 285 422 5.13e-19 82.4
Msa0171050 MtrunA17_Chr7g0216891 45.977 87 43 3 49 131 204 290 5.31e-19 82.4
Msa0171050 MtrunA17_Chr2g0333851 50.000 64 31 1 60 122 167 230 5.84e-19 81.3
Msa0171050 MtrunA17_Chr2g0302391 45.946 74 39 1 49 121 198 271 1.12e-18 81.3
Msa0171050 MtrunA17_Chr1g0147881 49.351 77 38 1 49 124 249 325 1.18e-18 80.5
Msa0171050 MtrunA17_Chr5g0401821 46.835 79 41 1 49 126 186 264 1.21e-18 79.7
Msa0171050 MtrunA17_Chr3g0136961 52.542 59 27 1 61 118 137 195 2.86e-18 79.0
Msa0171050 MtrunA17_Chr5g0432071 54.839 62 27 1 62 123 104 164 3.29e-18 77.4
Msa0171050 MtrunA17_Chr4g0025061 44.444 81 44 1 44 123 342 422 3.43e-18 80.1
Msa0171050 MtrunA17_Chr7g0238921 57.627 59 25 0 60 118 122 180 8.39e-18 78.2
Msa0171050 MtrunA17_Chr1g0189391 54.930 71 31 1 49 118 84 154 8.74e-18 78.2
Msa0171050 MtrunA17_Chr2g0288871 40.404 99 53 2 29 121 267 365 1.24e-17 78.6
Msa0171050 MtrunA17_Chr3g0099641 34.615 130 78 3 13 135 197 326 1.77e-17 78.2
Msa0171050 MtrunA17_Chr4g0053281 45.570 79 42 1 49 126 253 331 3.04e-17 76.6
Msa0171050 MtrunA17_Chr4g0075201 44.737 76 41 1 49 123 254 329 3.44e-17 77.0
Msa0171050 MtrunA17_Chr5g0447711 37.805 82 51 0 47 128 215 296 3.68e-17 76.3
Msa0171050 MtrunA17_Chr1g0150281 49.123 57 28 1 63 118 141 197 7.91e-17 75.1
Msa0171050 MtrunA17_Chr2g0319961 38.655 119 52 4 17 128 41 145 9.21e-17 74.7
Msa0171050 MtrunA17_Chr7g0270051 43.243 74 41 1 60 132 51 124 9.58e-17 74.7
Msa0171050 MtrunA17_Chr1g0184691 45.679 81 42 2 49 127 280 360 1.05e-16 75.5
Msa0171050 MtrunA17_Chr6g0485431 51.562 64 30 1 59 121 151 214 1.09e-16 75.5
Msa0171050 MtrunA17_Chr7g0248721 49.296 71 35 1 48 118 127 196 1.10e-16 73.6
Msa0171050 MtrunA17_Chr4g0001361 47.619 63 32 1 60 121 160 222 1.12e-16 75.1
Msa0171050 MtrunA17_Chr2g0322391 44.737 76 41 1 49 123 336 411 1.44e-16 75.5
Msa0171050 MtrunA17_Chr4g0071521 46.479 71 37 1 49 118 232 302 7.67e-16 72.8
Msa0171050 MtrunA17_Chr8g0379461 51.613 62 29 1 63 123 77 138 1.42e-15 71.2
Msa0171050 MtrunA17_Chr1g0150271 42.857 63 35 1 60 121 99 161 2.74e-15 70.5
Msa0171050 MtrunA17_Chr8g0387501 44.872 78 39 2 61 134 128 205 3.05e-15 70.5
Msa0171050 MtrunA17_Chr2g0293481 41.975 81 43 2 63 142 268 345 6.32e-15 70.9
Msa0171050 MtrunA17_Chr2g0284321 44.595 74 40 1 63 135 36 109 1.91e-14 67.8
Msa0171050 MtrunA17_Chr7g0228941 42.308 78 44 1 43 119 33 110 2.21e-14 65.5
Msa0171050 MtrunA17_Chr8g0348311 48.611 72 33 2 60 127 153 224 2.45e-14 68.6
Msa0171050 MtrunA17_Chr3g0139021 44.595 74 40 1 47 119 299 372 2.57e-14 68.9
Msa0171050 MtrunA17_Chr7g0248691 48.611 72 33 2 60 127 152 223 3.94e-14 68.2
Msa0171050 MtrunA17_Chr2g0289181 47.826 69 35 1 59 126 11 79 6.22e-14 66.6
Msa0171050 MtrunA17_Chr1g0202461 46.154 65 34 1 59 122 258 322 3.53e-13 65.5
Msa0171050 MtrunA17_Chr3g0126391 50.847 59 26 1 61 116 132 190 4.48e-13 65.1
Msa0171050 MtrunA17_Chr4g0024391 31.707 123 81 2 12 133 179 299 2.32e-12 63.2
Msa0171050 MtrunA17_Chr8g0387981 48.276 58 27 1 62 116 132 189 1.94e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171050 AT2G03340.1 58.462 130 53 1 2 130 354 483 4.11e-48 162
Msa0171050 AT2G03340.1 52.308 65 30 1 62 126 250 313 1.25e-17 79.0
Msa0171050 AT1G13960.2 59.836 122 47 2 2 121 194 315 5.08e-44 148
Msa0171050 AT1G13960.2 56.667 60 25 1 62 121 76 134 3.03e-17 77.4
Msa0171050 AT1G13960.1 59.836 122 47 2 2 121 347 468 3.86e-43 149
Msa0171050 AT1G13960.1 56.667 60 25 1 62 121 229 287 2.24e-17 78.2
Msa0171050 AT5G56270.1 62.245 98 36 1 26 123 452 548 3.21e-36 132
Msa0171050 AT5G56270.1 53.333 60 27 1 62 121 273 331 1.04e-14 70.5
Msa0171050 AT4G26640.5 58.491 106 42 1 22 127 167 270 2.35e-35 126
Msa0171050 AT4G26640.5 51.613 62 29 1 60 121 33 93 2.45e-14 69.3
Msa0171050 AT4G26640.6 58.491 106 42 1 22 127 167 270 2.35e-35 126
Msa0171050 AT4G26640.6 51.613 62 29 1 60 121 33 93 2.45e-14 69.3
Msa0171050 AT4G26640.4 58.491 106 42 1 22 127 167 270 2.35e-35 126
Msa0171050 AT4G26640.4 51.613 62 29 1 60 121 33 93 2.45e-14 69.3
Msa0171050 AT4G26640.3 58.491 106 42 1 22 127 167 270 2.35e-35 126
Msa0171050 AT4G26640.3 51.613 62 29 1 60 121 33 93 2.45e-14 69.3
Msa0171050 AT5G07100.2 69.737 76 23 0 47 122 126 201 4.75e-35 121
Msa0171050 AT5G07100.2 50.000 70 35 0 62 131 24 93 1.66e-18 79.0
Msa0171050 AT5G07100.4 69.737 76 23 0 47 122 126 201 4.75e-35 121
Msa0171050 AT5G07100.4 50.000 70 35 0 62 131 24 93 1.66e-18 79.0
Msa0171050 AT5G07100.5 69.737 76 23 0 47 122 126 201 4.75e-35 121
Msa0171050 AT5G07100.5 50.000 70 35 0 62 131 24 93 1.66e-18 79.0
Msa0171050 AT5G07100.3 69.737 76 23 0 47 122 126 201 4.75e-35 121
Msa0171050 AT5G07100.3 50.000 70 35 0 62 131 24 93 1.66e-18 79.0
Msa0171050 AT4G26640.1 58.491 106 42 1 22 127 271 374 7.65e-35 126
Msa0171050 AT4G26640.1 51.613 62 29 1 60 121 137 197 2.17e-14 69.7
Msa0171050 AT3G01080.1 59.783 92 37 0 30 121 274 365 9.58e-35 125
Msa0171050 AT3G01080.1 51.667 60 28 1 62 121 167 225 7.51e-13 65.1
Msa0171050 AT4G26640.7 58.491 106 42 1 22 127 303 406 1.04e-34 126
Msa0171050 AT4G26640.7 51.613 62 29 1 60 121 169 229 2.12e-14 69.7
Msa0171050 AT4G26640.2 58.491 106 42 1 22 127 343 446 1.18e-34 126
Msa0171050 AT4G26640.2 51.613 62 29 1 60 121 209 269 1.95e-14 69.7
Msa0171050 AT4G26440.1 53.043 115 53 1 14 128 325 438 1.21e-34 127
Msa0171050 AT4G26440.1 51.667 60 28 1 62 121 178 236 2.57e-14 69.3
Msa0171050 AT3G01080.2 59.783 92 37 0 30 121 312 403 1.54e-34 125
Msa0171050 AT3G01080.2 51.667 60 28 1 62 121 205 263 7.52e-13 65.1
Msa0171050 AT5G07100.1 69.737 76 23 0 47 122 219 294 2.75e-34 122
Msa0171050 AT5G07100.1 50.000 70 35 0 62 131 117 186 3.65e-18 79.3
Msa0171050 AT2G38470.1 48.872 133 59 1 7 130 298 430 6.48e-34 124
Msa0171050 AT2G38470.1 55.000 60 26 1 62 121 184 242 1.88e-16 75.5
Msa0171050 AT2G30250.1 58.025 81 34 0 47 127 313 393 1.42e-29 111
Msa0171050 AT2G30250.1 50.000 60 29 1 62 121 166 224 1.26e-11 61.6
Msa0171050 AT4G18170.1 42.735 117 53 2 8 124 132 234 4.22e-29 108
Msa0171050 AT1G29860.1 53.846 78 36 0 47 124 121 198 4.49e-27 102
Msa0171050 AT5G46350.1 53.333 75 35 0 48 122 169 243 2.46e-26 101
Msa0171050 AT3G01970.1 48.913 92 47 0 49 140 52 143 4.49e-26 96.7
Msa0171050 AT2G47260.1 50.649 77 38 0 47 123 159 235 5.03e-25 98.2
Msa0171050 AT5G26170.1 55.714 70 31 0 49 118 100 169 8.27e-25 94.0
Msa0171050 AT2G04880.2 44.340 106 57 1 23 128 246 349 8.80e-25 99.0
Msa0171050 AT2G04880.2 38.938 113 59 3 13 125 71 173 7.29e-17 76.6
Msa0171050 AT2G04880.1 40.800 125 70 2 4 128 253 373 9.13e-25 99.0
Msa0171050 AT2G04880.1 38.938 113 59 3 13 125 71 173 8.09e-17 76.6
Msa0171050 AT5G13080.1 45.652 92 50 0 49 140 54 145 1.37e-24 92.8
Msa0171050 AT5G49520.1 54.545 77 35 0 47 123 206 282 1.75e-24 97.4
Msa0171050 AT5G41570.1 44.554 101 56 0 43 143 79 179 9.25e-24 91.7
Msa0171050 AT3G62340.1 52.703 74 35 0 48 121 104 177 3.02e-23 92.4
Msa0171050 AT4G39410.1 50.549 91 40 1 43 128 204 294 3.71e-23 92.8
Msa0171050 AT2G44745.1 55.263 76 34 0 43 118 126 201 4.07e-23 90.9
Msa0171050 AT5G64810.1 54.054 74 34 0 46 119 94 167 5.68e-23 89.7
Msa0171050 AT1G69310.4 54.167 72 33 0 47 118 132 203 1.77e-22 90.5
Msa0171050 AT1G69310.2 54.167 72 33 0 47 118 132 203 1.77e-22 90.5
Msa0171050 AT1G69310.1 54.167 72 33 0 47 118 132 203 1.77e-22 90.5
Msa0171050 AT1G68150.1 39.024 123 69 3 15 131 186 308 3.91e-22 90.9
Msa0171050 AT1G64000.1 50.000 80 40 0 39 118 91 170 5.20e-22 87.4
Msa0171050 AT4G30935.1 42.105 114 56 3 16 121 279 390 3.19e-21 89.0
Msa0171050 AT2G37260.2 55.556 72 32 0 59 130 264 335 8.34e-21 87.0
Msa0171050 AT2G37260.2 53.333 60 27 1 63 122 84 142 8.73e-15 70.5
Msa0171050 AT2G37260.3 55.556 72 32 0 59 130 266 337 9.03e-21 87.0
Msa0171050 AT2G37260.3 53.333 60 27 1 63 122 86 144 9.07e-15 70.5
Msa0171050 AT2G37260.1 55.556 72 32 0 59 130 346 417 1.20e-20 87.0
Msa0171050 AT2G37260.1 53.333 60 27 1 63 122 166 224 9.59e-15 70.5
Msa0171050 AT1G55600.1 51.136 88 42 1 34 121 280 366 1.60e-20 87.0
Msa0171050 AT4G04450.2 46.835 79 41 1 49 126 185 263 1.72e-20 86.7
Msa0171050 AT2G21900.1 42.708 96 51 2 31 122 74 169 1.84e-20 83.6
Msa0171050 AT4G04450.1 46.835 79 41 1 49 126 279 357 3.06e-20 86.3
Msa0171050 AT5G15130.1 44.211 95 44 3 61 146 226 320 9.15e-20 85.1
Msa0171050 AT5G15130.2 44.211 95 44 3 61 146 184 278 1.15e-19 84.7
Msa0171050 AT1G62300.1 46.053 76 40 1 47 121 297 372 2.09e-19 84.0
Msa0171050 AT2G46130.1 49.296 71 36 0 48 118 16 86 6.74e-19 77.0
Msa0171050 AT1G80840.1 42.857 77 43 1 60 135 144 220 8.18e-19 80.9
Msa0171050 AT2G25000.2 46.774 62 32 1 61 121 102 163 1.54e-18 79.0
Msa0171050 AT2G25000.4 46.774 62 32 1 61 121 102 163 1.54e-18 79.0
Msa0171050 AT2G25000.3 46.774 62 32 1 61 121 124 185 2.97e-18 78.6
Msa0171050 AT3G58710.2 40.157 127 55 5 17 134 31 145 3.11e-18 79.0
Msa0171050 AT2G25000.1 46.774 62 32 1 61 121 145 206 4.15e-18 78.6
Msa0171050 AT3G58710.1 39.844 128 55 5 17 134 31 146 4.16e-18 78.6
Msa0171050 AT4G31800.2 41.772 79 38 2 61 131 110 188 7.10e-18 77.8
Msa0171050 AT4G31800.1 41.772 79 38 2 61 131 175 253 1.02e-17 78.2
Msa0171050 AT1G18860.1 43.243 74 41 1 49 121 226 299 1.06e-17 79.0
Msa0171050 AT1G69310.3 50.000 72 32 1 47 118 132 199 1.97e-17 77.0
Msa0171050 AT4G31550.1 50.000 72 35 1 49 119 233 304 2.90e-17 77.0
Msa0171050 AT4G31550.2 50.000 72 35 1 49 119 232 303 3.09e-17 77.0
Msa0171050 AT4G22070.4 47.297 74 38 1 49 121 284 357 3.82e-17 77.4
Msa0171050 AT4G22070.3 47.297 74 38 1 49 121 284 357 3.82e-17 77.4
Msa0171050 AT4G22070.2 47.297 74 38 1 49 121 284 357 3.82e-17 77.4
Msa0171050 AT4G22070.1 47.297 74 38 1 49 121 284 357 3.82e-17 77.4
Msa0171050 AT4G24240.1 46.575 73 38 1 49 120 268 340 7.19e-17 76.3
Msa0171050 AT2G23320.1 49.315 73 36 1 49 120 227 299 9.52e-17 75.5
Msa0171050 AT5G43290.1 44.706 85 35 1 46 118 86 170 2.98e-16 73.6
Msa0171050 AT4G23550.1 47.945 73 34 2 59 127 137 209 4.01e-16 73.9
Msa0171050 AT4G01720.1 45.946 74 39 1 49 121 226 299 5.41e-16 74.3
Msa0171050 AT2G24570.1 46.667 75 39 1 49 122 230 304 1.29e-15 72.4
Msa0171050 AT4G12020.11 48.780 82 41 1 2 82 580 661 1.69e-15 72.8
Msa0171050 AT4G12020.11 35.714 98 54 2 61 150 467 563 4.51e-12 63.2
Msa0171050 AT5G28650.1 43.902 82 45 1 49 129 249 330 1.90e-15 72.0
Msa0171050 AT2G30590.1 47.887 71 36 1 49 118 300 370 1.95e-15 72.4
Msa0171050 AT4G12020.1 48.780 82 41 1 2 82 580 661 1.98e-15 72.8
Msa0171050 AT4G12020.1 35.714 98 54 2 61 150 467 563 3.23e-12 63.5
Msa0171050 AT4G12020.9 48.780 82 41 1 2 82 580 661 1.98e-15 72.8
Msa0171050 AT4G12020.9 35.714 98 54 2 61 150 467 563 3.23e-12 63.5
Msa0171050 AT4G12020.6 48.780 82 41 1 2 82 580 661 2.00e-15 72.8
Msa0171050 AT4G12020.6 35.714 98 54 2 61 150 467 563 3.59e-12 63.5
Msa0171050 AT4G12020.8 48.780 82 41 1 2 82 580 661 2.00e-15 72.8
Msa0171050 AT4G12020.8 35.714 98 54 2 61 150 467 563 3.59e-12 63.5
Msa0171050 AT4G12020.7 48.780 82 41 1 2 82 580 661 2.06e-15 72.8
Msa0171050 AT4G12020.7 35.714 98 54 2 61 150 467 563 3.29e-12 63.5
Msa0171050 AT4G01250.1 44.444 81 41 2 60 139 126 203 2.11e-15 71.6
Msa0171050 AT4G12020.3 48.780 82 41 1 2 82 580 661 2.19e-15 72.8
Msa0171050 AT4G12020.3 40.000 85 42 2 61 137 467 550 3.49e-12 63.5
Msa0171050 AT4G12020.2 48.780 82 41 1 2 82 580 661 2.23e-15 72.8
Msa0171050 AT4G12020.2 35.714 98 54 2 61 150 467 563 3.67e-12 63.5
Msa0171050 AT4G12020.10 48.780 82 41 1 2 82 580 661 2.34e-15 72.4
Msa0171050 AT4G12020.10 40.000 85 42 2 61 137 467 550 3.49e-12 63.5
Msa0171050 AT4G12020.4 48.780 82 41 1 2 82 580 661 2.34e-15 72.4
Msa0171050 AT4G12020.4 35.714 98 54 2 61 150 467 563 3.60e-12 63.5
Msa0171050 AT4G12020.5 48.780 82 41 1 2 82 513 594 2.41e-15 72.4
Msa0171050 AT4G12020.5 35.714 98 54 2 61 150 400 496 3.59e-12 63.5
Msa0171050 AT3G04670.1 43.902 82 45 1 49 129 249 330 2.96e-15 71.6
Msa0171050 AT2G34830.2 50.820 61 29 1 63 122 225 285 1.23e-14 70.1
Msa0171050 AT2G34830.1 50.820 61 29 1 63 122 216 276 1.28e-14 70.1
Msa0171050 AT5G52830.1 45.000 80 40 2 52 127 155 234 2.13e-14 69.3
Msa0171050 AT2G46130.2 45.070 71 35 1 48 118 16 82 6.98e-14 63.9
Msa0171050 AT5G45050.4 49.180 61 30 1 63 122 1042 1102 9.63e-14 67.8
Msa0171050 AT1G29280.1 48.333 60 30 1 63 121 75 134 9.67e-14 66.6
Msa0171050 AT5G45050.2 49.180 61 30 1 63 122 1153 1213 9.69e-14 67.8
Msa0171050 AT5G45050.1 49.180 61 30 1 63 122 1181 1241 9.71e-14 67.8
Msa0171050 AT1G30650.1 50.000 60 29 1 63 121 218 277 1.07e-13 67.4
Msa0171050 AT1G69810.1 41.333 75 40 3 61 133 202 274 3.26e-13 66.2
Msa0171050 AT1G69810.2 41.333 75 40 3 61 133 144 216 4.96e-13 65.5
Msa0171050 AT3G01080.3 51.667 60 28 1 62 121 205 263 5.82e-13 65.1
Msa0171050 AT3G56400.1 36.842 76 41 2 60 128 118 193 4.36e-12 62.4
Msa0171050 AT5G45260.1 33.333 93 55 3 35 122 1181 1271 2.98e-11 60.8
Msa0171050 AT2G46400.1 30.189 106 61 2 14 116 66 161 8.93e-11 58.9

Find 34 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAACCTACCTTCTTT+TGG 0.196792 1_4:+55543344 None:intergenic
ATGTTGGAACGTCATGATTA+TGG 0.288202 1_4:+55541980 None:intergenic
GTTGTTATTATATTTATTCT+AGG 0.291981 1_4:+55543192 None:intergenic
AAGCAATATCACCTAGGATT+AGG 0.314028 1_4:+55543099 None:intergenic
TCTTAGACGATGGATATAAT+TGG 0.347263 1_4:-55543155 Msa0171050:CDS
AGCAATATCACCTAGGATTA+GGG 0.361293 1_4:+55543100 None:intergenic
TCATGACGTTCCAACATCTA+TGG 0.377282 1_4:-55541974 Msa0171050:CDS
GGATATAATTGGAGAAAATA+CGG 0.397885 1_4:-55543144 Msa0171050:CDS
TTTGACAATATTGGTAATGA+TGG 0.414983 1_4:-55541907 Msa0171050:CDS
ATCAAATAGGTTCTTCATAT+AGG 0.420582 1_4:-55543227 Msa0171050:CDS
GTCTAAGAGATCAATCTTGC+TGG 0.427915 1_4:+55543170 None:intergenic
TACGTTGTGATGACATCTTT+AGG 0.433584 1_4:+55542012 None:intergenic
ATCGCGATCTTAAATCAAAT+AGG 0.461929 1_4:-55543240 Msa0171050:CDS
AAAACTAGGCTCCTCAGAAA+TGG 0.462177 1_4:+55541927 None:intergenic
GAAAGCGTGTAGAGAGAGCT+TGG 0.508767 1_4:-55542041 Msa0171050:CDS
GCATAGGAAACCCTAATCCT+AGG 0.512114 1_4:-55543110 Msa0171050:intron
ATATTTATTCTAGGCTCTGT+GGG 0.530035 1_4:+55543201 None:intergenic
GATATAATTGGAGAAAATAC+GGG 0.530666 1_4:-55543143 Msa0171050:CDS
TACTACAAATGTACGGTACC+AGG 0.530781 1_4:-55542075 Msa0171050:CDS
GATGTCATCACAACGTATGT+AGG 0.533158 1_4:-55542006 Msa0171050:CDS
TGGCTATTAGCCATAGATGT+TGG 0.542428 1_4:+55541964 None:intergenic
AAGATTGATCTCTTAGACGA+TGG 0.544254 1_4:-55543165 Msa0171050:CDS
TATATTTATTCTAGGCTCTG+TGG 0.546550 1_4:+55543200 None:intergenic
CGCTTTCGAATGCTACAACC+TGG 0.550383 1_4:+55542057 None:intergenic
CCAAGCGAAAATGAAGAACT+AGG 0.556758 1_4:-55543411 Msa0171050:CDS
AGGCTCCTCAGAAATGGTGT+TGG 0.564390 1_4:+55541933 None:intergenic
AAAGCGTGTAGAGAGAGCTT+GGG 0.573571 1_4:-55542040 Msa0171050:CDS
TATTTCCAACACCATTTCTG+AGG 0.589759 1_4:-55541938 Msa0171050:CDS
GCGTGTAGAGAGAGCTTGGG+TGG 0.595065 1_4:-55542037 Msa0171050:CDS
TAGGAGTTACTACAAATGTA+CGG 0.606871 1_4:-55542082 Msa0171050:CDS
TTACCAATATTGTCAAAACT+AGG 0.612412 1_4:+55541913 None:intergenic
TACGGGCAACGAGTTTGCAT+AGG 0.651147 1_4:-55543126 Msa0171050:CDS
AAATGGTGTTGGAAATAGTG+TGG 0.703460 1_4:+55541944 None:intergenic
AGCGAAAATGAAGAACTAGG+TGG 0.762878 1_4:-55543408 Msa0171050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTATTATATTTATTCT+AGG + chr1_4:55542122-55542141 None:intergenic 15.0%
!! AAACTATTGTAATTGAAATT+AGG - chr1_4:55542961-55542980 Msa0171050:intron 15.0%
!! AACTATTGTAATTGAAATTA+GGG - chr1_4:55542962-55542981 Msa0171050:intron 15.0%
!!! GTTGTTATTATATTTATTCT+AGG + chr1_4:55542122-55542141 None:intergenic 15.0%
!! AAACTATTGTAATTGAAATT+AGG - chr1_4:55542961-55542980 Msa0171050:intron 15.0%
!! AACTATTGTAATTGAAATTA+GGG - chr1_4:55542962-55542981 Msa0171050:intron 15.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_4:55542240-55542259 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_4:55542313-55542332 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_4:55542535-55542554 Msa0171050:intron 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_4:55542927-55542946 Msa0171050:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_4:55542932-55542951 Msa0171050:intron 20.0%
!! AACAAATAATACGTGAAATT+CGG + chr1_4:55543135-55543154 None:intergenic 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_4:55542240-55542259 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_4:55542313-55542332 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_4:55542535-55542554 Msa0171050:intron 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_4:55542927-55542946 Msa0171050:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_4:55542932-55542951 Msa0171050:intron 20.0%
!! AACAAATAATACGTGAAATT+CGG + chr1_4:55543135-55543154 None:intergenic 20.0%
!! AATAAAACCTACCTTCTTTT+GGG + chr1_4:55541969-55541988 None:intergenic 25.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_4:55541991-55542010 Msa0171050:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_4:55542084-55542103 Msa0171050:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_4:55542167-55542186 Msa0171050:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_4:55542168-55542187 Msa0171050:intron 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_4:55542325-55542344 Msa0171050:intron 25.0%
! TTATCCATGAATTGTACTAT+AGG + chr1_4:55542466-55542485 None:intergenic 25.0%
! TTGTAATTGAAATTAGGGTT+AGG - chr1_4:55542967-55542986 Msa0171050:intron 25.0%
! ACAAATAATACGTGAAATTC+GGG + chr1_4:55543134-55543153 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_4:55543401-55543420 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_4:55543404-55543423 Msa0171050:CDS 25.0%
!! AATAAAACCTACCTTCTTTT+GGG + chr1_4:55541969-55541988 None:intergenic 25.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_4:55541991-55542010 Msa0171050:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_4:55542084-55542103 Msa0171050:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_4:55542167-55542186 Msa0171050:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_4:55542168-55542187 Msa0171050:intron 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_4:55542325-55542344 Msa0171050:intron 25.0%
! TTATCCATGAATTGTACTAT+AGG + chr1_4:55542466-55542485 None:intergenic 25.0%
! TTGTAATTGAAATTAGGGTT+AGG - chr1_4:55542967-55542986 Msa0171050:intron 25.0%
! ACAAATAATACGTGAAATTC+GGG + chr1_4:55543134-55543153 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_4:55543401-55543420 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_4:55543404-55543423 Msa0171050:CDS 25.0%
! ATAAAACCTACCTTCTTTTG+GGG + chr1_4:55541968-55541987 None:intergenic 30.0%
! CAATAAAACCTACCTTCTTT+TGG + chr1_4:55541970-55541989 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_4:55542071-55542090 Msa0171050:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG + chr1_4:55542113-55542132 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG + chr1_4:55542114-55542133 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_4:55542156-55542175 Msa0171050:intron 30.0%
TGAGTTATCCATGAATGTTA+TGG - chr1_4:55542261-55542280 Msa0171050:intron 30.0%
AAAGACAACCATAACATTCA+TGG + chr1_4:55542272-55542291 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_4:55542519-55542538 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_4:55542580-55542599 None:intergenic 30.0%
!! GAGTTTGATAGTGAAAATGT+GGG + chr1_4:55542839-55542858 None:intergenic 30.0%
AAATAATACGTGAAATTCGG+GGG + chr1_4:55543132-55543151 None:intergenic 30.0%
CAAATAATACGTGAAATTCG+GGG + chr1_4:55543133-55543152 None:intergenic 30.0%
GTAACTCCTAAACATTATAC+AGG + chr1_4:55543219-55543238 None:intergenic 30.0%
TAGGAGTTACTACAAATGTA+CGG - chr1_4:55543229-55543248 Msa0171050:CDS 30.0%
! ATAAAACCTACCTTCTTTTG+GGG + chr1_4:55541968-55541987 None:intergenic 30.0%
! CAATAAAACCTACCTTCTTT+TGG + chr1_4:55541970-55541989 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_4:55542071-55542090 Msa0171050:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG + chr1_4:55542113-55542132 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG + chr1_4:55542114-55542133 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_4:55542156-55542175 Msa0171050:intron 30.0%
TGAGTTATCCATGAATGTTA+TGG - chr1_4:55542261-55542280 Msa0171050:intron 30.0%
AAAGACAACCATAACATTCA+TGG + chr1_4:55542272-55542291 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_4:55542519-55542538 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_4:55542580-55542599 None:intergenic 30.0%
!! GAGTTTGATAGTGAAAATGT+GGG + chr1_4:55542839-55542858 None:intergenic 30.0%
AAATAATACGTGAAATTCGG+GGG + chr1_4:55543132-55543151 None:intergenic 30.0%
CAAATAATACGTGAAATTCG+GGG + chr1_4:55543133-55543152 None:intergenic 30.0%
GTAACTCCTAAACATTATAC+AGG + chr1_4:55543219-55543238 None:intergenic 30.0%
TAGGAGTTACTACAAATGTA+CGG - chr1_4:55543229-55543248 Msa0171050:CDS 30.0%
! TAAAACCTACCTTCTTTTGG+GGG + chr1_4:55541967-55541986 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_4:55542146-55542165 Msa0171050:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_4:55542214-55542233 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_4:55542215-55542234 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_4:55542399-55542418 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_4:55542396-55542415 Msa0171050:intron 35.0%
ATGTCTCTTAAGCTGACAAT+TGG - chr1_4:55542421-55542440 Msa0171050:intron 35.0%
TGTCTCTTAAGCTGACAATT+GGG - chr1_4:55542422-55542441 Msa0171050:intron 35.0%
TCCTCCTATAGTACAATTCA+TGG - chr1_4:55542459-55542478 Msa0171050:intron 35.0%
TCCATGAATTGTACTATAGG+AGG + chr1_4:55542463-55542482 None:intergenic 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_4:55542712-55542731 Msa0171050:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_4:55542834-55542853 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_4:55542835-55542854 None:intergenic 35.0%
!! CGAGTTTGATAGTGAAAATG+TGG + chr1_4:55542840-55542859 None:intergenic 35.0%
!! TGTTCACAAATGGGTTGATT+AGG + chr1_4:55542865-55542884 None:intergenic 35.0%
AACCCATTTGTGAACAGTTT+GGG - chr1_4:55542869-55542888 Msa0171050:intron 35.0%
AACCCAAACTGTTCACAAAT+GGG + chr1_4:55542874-55542893 None:intergenic 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_4:55543000-55543019 Msa0171050:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_4:55543001-55543020 Msa0171050:intron 35.0%
TTACATGAGCATATCGTTGA+CGG + chr1_4:55543043-55543062 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_4:55543047-55543066 Msa0171050:intron 35.0%
AATAATACGTGAAATTCGGG+GGG + chr1_4:55543131-55543150 None:intergenic 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_4:55543210-55543229 Msa0171050:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_4:55543302-55543321 None:intergenic 35.0%
ATGTTGGAACGTCATGATTA+TGG + chr1_4:55543334-55543353 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_4:55543370-55543389 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_4:55543373-55543392 Msa0171050:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_4:55543395-55543414 Msa0171050:CDS 35.0%
! TAAAACCTACCTTCTTTTGG+GGG + chr1_4:55541967-55541986 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_4:55542146-55542165 Msa0171050:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_4:55542214-55542233 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_4:55542215-55542234 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_4:55542399-55542418 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_4:55542396-55542415 Msa0171050:intron 35.0%
ATGTCTCTTAAGCTGACAAT+TGG - chr1_4:55542421-55542440 Msa0171050:intron 35.0%
TGTCTCTTAAGCTGACAATT+GGG - chr1_4:55542422-55542441 Msa0171050:intron 35.0%
TCCTCCTATAGTACAATTCA+TGG - chr1_4:55542459-55542478 Msa0171050:intron 35.0%
TCCATGAATTGTACTATAGG+AGG + chr1_4:55542463-55542482 None:intergenic 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_4:55542712-55542731 Msa0171050:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_4:55542834-55542853 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_4:55542835-55542854 None:intergenic 35.0%
!! CGAGTTTGATAGTGAAAATG+TGG + chr1_4:55542840-55542859 None:intergenic 35.0%
!! TGTTCACAAATGGGTTGATT+AGG + chr1_4:55542865-55542884 None:intergenic 35.0%
AACCCATTTGTGAACAGTTT+GGG - chr1_4:55542869-55542888 Msa0171050:intron 35.0%
AACCCAAACTGTTCACAAAT+GGG + chr1_4:55542874-55542893 None:intergenic 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_4:55543000-55543019 Msa0171050:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_4:55543001-55543020 Msa0171050:intron 35.0%
TTACATGAGCATATCGTTGA+CGG + chr1_4:55543043-55543062 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_4:55543047-55543066 Msa0171050:intron 35.0%
AATAATACGTGAAATTCGGG+GGG + chr1_4:55543131-55543150 None:intergenic 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_4:55543210-55543229 Msa0171050:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_4:55543302-55543321 None:intergenic 35.0%
ATGTTGGAACGTCATGATTA+TGG + chr1_4:55543334-55543353 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_4:55543370-55543389 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_4:55543373-55543392 Msa0171050:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_4:55543395-55543414 Msa0171050:CDS 35.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_4:55541903-55541922 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_4:55541900-55541919 Msa0171050:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_4:55541903-55541922 Msa0171050:CDS 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_4:55542144-55542163 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_4:55542221-55542240 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_4:55542411-55542430 None:intergenic 40.0%
GTCTCTTAAGCTGACAATTG+GGG - chr1_4:55542423-55542442 Msa0171050:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_4:55542636-55542655 Msa0171050:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_4:55542640-55542659 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_4:55542637-55542656 Msa0171050:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_4:55542638-55542657 Msa0171050:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_4:55542665-55542684 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_4:55542666-55542685 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_4:55542665-55542684 Msa0171050:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_4:55542666-55542685 Msa0171050:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_4:55542713-55542732 Msa0171050:intron 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_4:55542797-55542816 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_4:55542795-55542814 Msa0171050:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_4:55542796-55542815 Msa0171050:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_4:55542802-55542821 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_4:55542803-55542822 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_4:55542801-55542820 Msa0171050:intron 40.0%
CAACCCATTTGTGAACAGTT+TGG - chr1_4:55542868-55542887 Msa0171050:intron 40.0%
GAACCCAAACTGTTCACAAA+TGG + chr1_4:55542875-55542894 None:intergenic 40.0%
TACATGAGCATATCGTTGAC+GGG + chr1_4:55543042-55543061 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_4:55543057-55543076 Msa0171050:intron 40.0%
GTTTCAATCACCAGTTTCGT+GGG - chr1_4:55543079-55543098 Msa0171050:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_4:55543236-55543255 Msa0171050:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_4:55543305-55543324 Msa0171050:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_4:55543337-55543356 Msa0171050:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_4:55543350-55543369 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_4:55543387-55543406 None:intergenic 40.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_4:55541903-55541922 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_4:55541900-55541919 Msa0171050:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_4:55541903-55541922 Msa0171050:CDS 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_4:55542144-55542163 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_4:55542221-55542240 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_4:55542411-55542430 None:intergenic 40.0%
GTCTCTTAAGCTGACAATTG+GGG - chr1_4:55542423-55542442 Msa0171050:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_4:55542636-55542655 Msa0171050:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_4:55542640-55542659 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_4:55542637-55542656 Msa0171050:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_4:55542638-55542657 Msa0171050:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_4:55542665-55542684 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_4:55542666-55542685 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_4:55542665-55542684 Msa0171050:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_4:55542666-55542685 Msa0171050:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_4:55542713-55542732 Msa0171050:intron 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_4:55542797-55542816 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_4:55542795-55542814 Msa0171050:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_4:55542796-55542815 Msa0171050:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_4:55542802-55542821 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_4:55542803-55542822 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_4:55542801-55542820 Msa0171050:intron 40.0%
CAACCCATTTGTGAACAGTT+TGG - chr1_4:55542868-55542887 Msa0171050:intron 40.0%
GAACCCAAACTGTTCACAAA+TGG + chr1_4:55542875-55542894 None:intergenic 40.0%
TACATGAGCATATCGTTGAC+GGG + chr1_4:55543042-55543061 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_4:55543057-55543076 Msa0171050:intron 40.0%
GTTTCAATCACCAGTTTCGT+GGG - chr1_4:55543079-55543098 Msa0171050:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_4:55543236-55543255 Msa0171050:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_4:55543305-55543324 Msa0171050:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_4:55543337-55543356 Msa0171050:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_4:55543350-55543369 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_4:55543387-55543406 None:intergenic 40.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_4:55542201-55542220 Msa0171050:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_4:55542641-55542660 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_4:55542717-55542736 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_4:55542728-55542747 Msa0171050:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_4:55542785-55542804 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_4:55542798-55542817 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_4:55542800-55542819 Msa0171050:intron 45.0%
! TTGTGAACAGTTTGGGTTCG+CGG - chr1_4:55542876-55542895 Msa0171050:intron 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_4:55543006-55543025 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_4:55543053-55543072 Msa0171050:intron 45.0%
GGTTTCAATCACCAGTTTCG+TGG - chr1_4:55543078-55543097 Msa0171050:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_4:55543271-55543290 Msa0171050:intron 45.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_4:55542201-55542220 Msa0171050:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_4:55542641-55542660 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_4:55542717-55542736 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_4:55542728-55542747 Msa0171050:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_4:55542785-55542804 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_4:55542798-55542817 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_4:55542800-55542819 Msa0171050:intron 45.0%
! TTGTGAACAGTTTGGGTTCG+CGG - chr1_4:55542876-55542895 Msa0171050:intron 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_4:55543006-55543025 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_4:55543053-55543072 Msa0171050:intron 45.0%
GGTTTCAATCACCAGTTTCG+TGG - chr1_4:55543078-55543097 Msa0171050:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_4:55543271-55543290 Msa0171050:intron 45.0%
TTGAACCTGCCCCCAAAAGA+AGG - chr1_4:55541955-55541974 Msa0171050:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_4:55542185-55542204 Msa0171050:intron 50.0%
TAAGCTGACAATTGGGGTGC+AGG - chr1_4:55542429-55542448 Msa0171050:intron 50.0%
AAGCTGACAATTGGGGTGCA+GGG - chr1_4:55542430-55542449 Msa0171050:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_4:55542683-55542702 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_4:55542727-55542746 Msa0171050:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_4:55542729-55542748 Msa0171050:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_4:55542744-55542763 Msa0171050:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_4:55543010-55543029 Msa0171050:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_4:55543011-55543030 Msa0171050:intron 50.0%
ACTGGTGATTGAAACCGACC+AGG + chr1_4:55543074-55543093 None:intergenic 50.0%
ATACGTGAAATTCGGGGGGT+CGG + chr1_4:55543127-55543146 None:intergenic 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_4:55543257-55543276 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_4:55543270-55543289 Msa0171050:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_4:55543381-55543400 None:intergenic 50.0%
TTGAACCTGCCCCCAAAAGA+AGG - chr1_4:55541955-55541974 Msa0171050:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_4:55542185-55542204 Msa0171050:intron 50.0%
TAAGCTGACAATTGGGGTGC+AGG - chr1_4:55542429-55542448 Msa0171050:intron 50.0%
AAGCTGACAATTGGGGTGCA+GGG - chr1_4:55542430-55542449 Msa0171050:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_4:55542683-55542702 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_4:55542727-55542746 Msa0171050:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_4:55542729-55542748 Msa0171050:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_4:55542744-55542763 Msa0171050:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_4:55543010-55543029 Msa0171050:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_4:55543011-55543030 Msa0171050:intron 50.0%
ACTGGTGATTGAAACCGACC+AGG + chr1_4:55543074-55543093 None:intergenic 50.0%
ATACGTGAAATTCGGGGGGT+CGG + chr1_4:55543127-55543146 None:intergenic 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_4:55543257-55543276 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_4:55543270-55543289 Msa0171050:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_4:55543381-55543400 None:intergenic 50.0%
ACCTGCCCCCAAAAGAAGGT+AGG - chr1_4:55541959-55541978 Msa0171050:CDS 55.0%
!! ACCTACCTTCTTTTGGGGGC+AGG + chr1_4:55541963-55541982 None:intergenic 55.0%
AGCTGACAATTGGGGTGCAG+GGG - chr1_4:55542431-55542450 Msa0171050:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_4:55542679-55542698 Msa0171050:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_4:55542741-55542760 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_4:55542738-55542757 Msa0171050:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_4:55542742-55542761 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_4:55542739-55542758 Msa0171050:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_4:55542743-55542762 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_4:55542743-55542762 Msa0171050:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_4:55542754-55542773 Msa0171050:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_4:55543013-55543032 None:intergenic 55.0%
! TGTGGGTTGACCCACGAAAC+TGG + chr1_4:55543092-55543111 None:intergenic 55.0%
ACCTGCCCCCAAAAGAAGGT+AGG - chr1_4:55541959-55541978 Msa0171050:CDS 55.0%
!! ACCTACCTTCTTTTGGGGGC+AGG + chr1_4:55541963-55541982 None:intergenic 55.0%
AGCTGACAATTGGGGTGCAG+GGG - chr1_4:55542431-55542450 Msa0171050:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_4:55542679-55542698 Msa0171050:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_4:55542741-55542760 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_4:55542738-55542757 Msa0171050:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_4:55542742-55542761 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_4:55542739-55542758 Msa0171050:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_4:55542743-55542762 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_4:55542743-55542762 Msa0171050:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_4:55542754-55542773 Msa0171050:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_4:55543013-55543032 None:intergenic 55.0%
! TGTGGGTTGACCCACGAAAC+TGG + chr1_4:55543092-55543111 None:intergenic 55.0%
GCTGACAATTGGGGTGCAGG+GGG - chr1_4:55542432-55542451 Msa0171050:intron 60.0%
GTCGGAGGGTTCATGGGTGT+GGG + chr1_4:55543109-55543128 None:intergenic 60.0%
GTGAAATTCGGGGGGTCGGA+GGG + chr1_4:55543123-55543142 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_4:55543274-55543293 Msa0171050:intron 60.0%
GCTGACAATTGGGGTGCAGG+GGG - chr1_4:55542432-55542451 Msa0171050:intron 60.0%
GTCGGAGGGTTCATGGGTGT+GGG + chr1_4:55543109-55543128 None:intergenic 60.0%
GTGAAATTCGGGGGGTCGGA+GGG + chr1_4:55543123-55543142 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_4:55543274-55543293 Msa0171050:intron 60.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_4:55542748-55542767 Msa0171050:intron 65.0%
GGTCGGAGGGTTCATGGGTG+TGG + chr1_4:55543110-55543129 None:intergenic 65.0%
CGTGAAATTCGGGGGGTCGG+AGG + chr1_4:55543124-55543143 None:intergenic 65.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_4:55542748-55542767 Msa0171050:intron 65.0%
GGTCGGAGGGTTCATGGGTG+TGG + chr1_4:55543110-55543129 None:intergenic 65.0%
CGTGAAATTCGGGGGGTCGG+AGG + chr1_4:55543124-55543143 None:intergenic 65.0%
CGGGGGGTCGGAGGGTTCAT+GGG + chr1_4:55543115-55543134 None:intergenic 70.0%
TCGGGGGGTCGGAGGGTTCA+TGG + chr1_4:55543116-55543135 None:intergenic 70.0%
CGGGGGGTCGGAGGGTTCAT+GGG + chr1_4:55543115-55543134 None:intergenic 70.0%
TCGGGGGGTCGGAGGGTTCA+TGG + chr1_4:55543116-55543135 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55541894 55543439 55541894 ID=Msa0171050;Name=Msa0171050
chr1_4 mRNA 55541894 55543439 55541894 ID=Msa0171050-mRNA-1;Parent=Msa0171050;Name=Msa0171050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|150
chr1_4 exon 55543357 55543439 55543357 ID=Msa0171050-mRNA-1:exon:16652;Parent=Msa0171050-mRNA-1
chr1_4 exon 55543111 55543272 55543111 ID=Msa0171050-mRNA-1:exon:16651;Parent=Msa0171050-mRNA-1
chr1_4 exon 55541894 55542101 55541894 ID=Msa0171050-mRNA-1:exon:16650;Parent=Msa0171050-mRNA-1
chr1_4 CDS 55543357 55543439 55543357 ID=Msa0171050-mRNA-1:cds;Parent=Msa0171050-mRNA-1
chr1_4 CDS 55543111 55543272 55543111 ID=Msa0171050-mRNA-1:cds;Parent=Msa0171050-mRNA-1
chr1_4 CDS 55541894 55542101 55541894 ID=Msa0171050-mRNA-1:cds;Parent=Msa0171050-mRNA-1
Gene Sequence

>Msa0171050

ATGGAACCAAGCGAAAATGAAGAACTAGGTGGTGATGAAATTGAAGTTGATCGAAAAATTGTTGAACCTGCCCCCAAAAGAAGAAATGCAGAGATCGCGATCTTAAATCAAATAGGTTCTTCATATAGGTCTCCCACAGAGCCTAGAATAAATATAATAACAACCAGCAAGATTGATCTCTTAGACGATGGATATAATTGGAGAAAATACGGGCAACGAGTTTGCATAGGAAACCCTAATCCTAGGAGTTACTACAAATGTACGGTACCAGGTTGTAGCATTCGAAAGCGTGTAGAGAGAGCTTGGGTGGATCCTAAAGATGTCATCACAACGTATGTAGGAAGCCATAATCATGACGTTCCAACATCTATGGCTAATAGCCACACTATTTCCAACACCATTTCTGAGGAGCCTAGTTTTGACAATATTGGTAATGATGGCGACAATATTTAA
Protein sequence

>Msa0171050

MEPSENEELGGDEIEVDRKIVEPAPKRRNAEIAILNQIGSSYRSPTEPRINIITTSKIDLLDDGYNWRKYGQRVCIGNPNPRSYYKCTVPGCSIRKRVERAWVDPKDVITTYVGSHNHDVPTSMANSHTISNTISEEPSFDNIGNDGDNI*