AlfalfaGEDB | Msa0172220

M. sativa cultivar zhongmu-4 / Msa0172220

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172220	XP_003591032.2	57.627	236	50	3	1	187	1	235	4.27e-68	223

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172220	sp\|Q9CAV7\|STKLJ_ARATH	40.708	113	49	5	48	142	73	185	5.66e-16	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172220	G7I7E7	57.627	236	50	3	1	187	1	235	2.04e-68	223

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TFs/TRs:

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Gene ID	Type	Classification
Msa0172220	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172220	MtrunA17_Chr1g0191021	57.627	236	50	3	1	187	1	235	3.93e-72	223
Msa0172220	MtrunA17_Chr7g0273821	52.273	88	32	2	59	142	75	156	1.05e-20	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172220	AT3G04930.2	40.708	113	49	5	48	142	73	185	5.25e-17	78.2
Msa0172220	AT3G04930.1	40.708	113	49	5	48	142	73	185	5.75e-17	78.2
Msa0172220	AT5G28040.2	44.231	104	47	5	48	141	69	171	4.71e-15	72.8
Msa0172220	AT5G28040.1	44.231	104	47	5	48	141	69	171	4.71e-15	72.8
Msa0172220	AT1G44810.1	47.170	53	28	0	90	142	115	167	6.83e-11	60.1

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Find 38 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGCTGAATTAGGGTT+AGG	0.355729	1_4:-57205575	None:intergenic
AACAATAATTCAACTCCAAT+TGG	0.392174	1_4:+57205515	Msa0172220:CDS
AAGGCTAAGATGATGGTGGT+GGG	0.520564	1_4:-57205110	None:intergenic
AATGAGCTGAATTAGGGTTA+GGG	0.478935	1_4:-57205574	None:intergenic
ACGACTCCCTTGAACCAAAA+TGG	0.287269	1_4:+57205165	Msa0172220:CDS
AGGCTAAGATGATGGTGGTG+GGG	0.634264	1_4:-57205109	None:intergenic
ATCGTTCTATGATCAAATTA+AGG	0.483787	1_4:+57205325	Msa0172220:CDS
ATGATAAGAAGATCCACGAT+TGG	0.603760	1_4:-57205291	None:intergenic
ATTTCCTCATATTCTTCAAC+AGG	0.386946	1_4:-57205542	None:intergenic
CAGCGTAATCGTCTTGATTG+GGG	0.609306	1_4:-57204968	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGACAAAGATTGTTCAGTT+TGG	-	chr1_4:57205067-57205086	None:intergenic	30.0%
ATTTCCTCATATTCTTCAAC+AGG	-	chr1_4:57205545-57205564	None:intergenic	30.0%
ATGATAAGAAGATCCACGAT+TGG	-	chr1_4:57205294-57205313	None:intergenic	35.0%
TGTTCCTGTTGAAGAATATG+AGG	+	chr1_4:57205538-57205557	Msa0172220:CDS	35.0%
AATGAGCTGAATTAGGGTTA+GGG	-	chr1_4:57205577-57205596	None:intergenic	35.0%
AAATGAGCTGAATTAGGGTT+AGG	-	chr1_4:57205578-57205597	None:intergenic	35.0%
CAGTCAAATGAGCTGAATTA+GGG	-	chr1_4:57205583-57205602	None:intergenic	35.0%
TCAGTCAAATGAGCTGAATT+AGG	-	chr1_4:57205584-57205603	None:intergenic	35.0%
TCAGCGTAATCGTCTTGATT+GGG	-	chr1_4:57204972-57204991	None:intergenic	40.0%
GTTTGGTAAGGCTAAGATGA+TGG	-	chr1_4:57205120-57205139	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	57204939	57205646	57204939	ID=Msa0172220;Name=Msa0172220
chr1_4	mRNA	57204939	57205646	57204939	ID=Msa0172220-mRNA-1;Parent=Msa0172220;Name=Msa0172220-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|1\|1\|1\|2\|0\|187
chr1_4	exon	57204939	57205364	57204939	ID=Msa0172220-mRNA-1:exon:17484;Parent=Msa0172220-mRNA-1
chr1_4	exon	57205509	57205646	57205509	ID=Msa0172220-mRNA-1:exon:17485;Parent=Msa0172220-mRNA-1
chr1_4	CDS	57204939	57205364	57204939	ID=Msa0172220-mRNA-1:cds;Parent=Msa0172220-mRNA-1
chr1_4	CDS	57205509	57205646	57205509	ID=Msa0172220-mRNA-1:cds;Parent=Msa0172220-mRNA-1

Gene Sequence

>Msa0172220

ATGGCATTCTCTCGAAACGGCATCGTTATCCCCAATCAAGACGATTACGCTGACATCGAAGGTGAAGACGATGACGAATTAGAAGAAGAAGACAACTATTTTGTCCAACCAAACATCAAAAACTACCAAACTGAACAATCTTTGTCAACATTCACCACCACTGCCACCATCCCCACCACCATCATCTTAGCCTTACCAAACACCGCTGCAACAACAAACATCGTCGACGACTCCCTTGAACCAAAATGGGAGCAAATGGAAGAGAAGAACAACGATTCACAGAAGCTTTTCCAATGTCTCTGGACTAAAGAAGACGAGATTACGATCTTGCAAGGTTTGCTCGATTACAACGCCAATCGTGGATCTTCTTATCATAATGATACTGGATCGTTCTATGATCAAATTAAGGCAAAGATTCAACTCAATAATTGTAACAATAATTCAACTCCAATTGGTGTTCCTGTTGAAGAATATGAGGAAATCATCCCAAACCCTAACCCTAATTCAGCTCATTTGACTGAGAAGAAAGTTGCGCAATCTCGTAAGAGATTGCGAGCATCTTAG

Protein sequence

>Msa0172220

MAFSRNGIVIPNQDDYADIEGEDDDELEEEDNYFVQPNIKNYQTEQSLSTFTTTATIPTTIILALPNTAATTNIVDDSLEPKWEQMEEKNNDSQKLFQCLWTKEDEITILQGLLDYNANRGSSYHNDTGSFYDQIKAKIQLNNCNNNSTPIGVPVEEYEEIIPNPNPNSAHLTEKKVAQSRKRLRAS*