Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172230 | sp|F4K5T4|STKLU_ARATH | 33.880 | 366 | 158 | 15 | 78 | 374 | 72 | 422 | 4.95e-42 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172230 | G7I7E5 | 92.308 | 377 | 27 | 2 | 1 | 377 | 1 | 375 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0172230 | TF | GeBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172230 | MtrunA17_Chr1g0191011 | 92.308 | 377 | 27 | 2 | 1 | 377 | 1 | 375 | 0.0 | 637 |
| Msa0172230 | MtrunA17_Chr1g0191021 | 32.249 | 338 | 171 | 10 | 82 | 373 | 45 | 370 | 6.13e-41 | 148 |
| Msa0172230 | MtrunA17_Chr7g0273821 | 44.444 | 171 | 76 | 7 | 73 | 230 | 42 | 206 | 2.46e-28 | 115 |
| Msa0172230 | MtrunA17_Chr7g0273821 | 38.793 | 116 | 48 | 5 | 278 | 374 | 323 | 434 | 2.59e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172230 | AT5G28040.2 | 33.880 | 366 | 158 | 15 | 78 | 374 | 72 | 422 | 5.03e-43 | 155 |
| Msa0172230 | AT5G28040.1 | 33.880 | 366 | 158 | 15 | 78 | 374 | 72 | 422 | 5.03e-43 | 155 |
| Msa0172230 | AT3G04930.1 | 30.105 | 382 | 174 | 11 | 78 | 374 | 78 | 451 | 2.20e-34 | 132 |
| Msa0172230 | AT3G04930.2 | 36.612 | 183 | 89 | 7 | 78 | 241 | 78 | 252 | 7.66e-26 | 107 |
| Msa0172230 | AT1G11510.1 | 35.606 | 132 | 69 | 4 | 109 | 230 | 105 | 230 | 3.59e-13 | 70.5 |
| Msa0172230 | AT1G11510.2 | 39.394 | 99 | 53 | 2 | 133 | 230 | 109 | 201 | 4.90e-13 | 69.7 |
Find 95 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATTCCACGCTGAATT+TGG | 0.144423 | 1_4:-57207658 | None:intergenic |
| TGCTTTCACCATTGGTTTCT+TGG | 0.184831 | 1_4:+57207133 | Msa0172230:CDS |
| TCGAAATTTCCCACAAGATT+TGG | 0.203495 | 1_4:+57207793 | Msa0172230:CDS |
| CGAAATTTCCCACAAGATTT+GGG | 0.213735 | 1_4:+57207794 | Msa0172230:CDS |
| CTTGTGGGAAATTTCGAAAA+TGG | 0.256771 | 1_4:-57207787 | None:intergenic |
| TCAATAAGATCAGGACTTTC+AGG | 0.284560 | 1_4:-57207867 | None:intergenic |
| ACCATTGTTGAAGGAACTAT+TGG | 0.296222 | 1_4:+57208064 | Msa0172230:CDS |
| TGAACTGTTGAAGGGATATC+TGG | 0.305389 | 1_4:+57207560 | Msa0172230:CDS |
| ATGGTTAAAACGGAGGATTT+TGG | 0.338805 | 1_4:+57208157 | Msa0172230:CDS |
| TGACACCGACCATGACGTTT+TGG | 0.344618 | 1_4:+57207821 | Msa0172230:CDS |
| AGAAGCTACGTAGGTTAAAA+AGG | 0.350716 | 1_4:+57207697 | Msa0172230:CDS |
| ATTGTGAAGAAACAGATAAA+AGG | 0.357039 | 1_4:+57207922 | Msa0172230:CDS |
| TGGTCTTCATCCACATTGTA+TGG | 0.361996 | 1_4:-57207321 | None:intergenic |
| GCCATGGCCACCGTCACAAC+GGG | 0.369780 | 1_4:-57207387 | None:intergenic |
| TTGAATTCCACGCTGAATTT+GGG | 0.371612 | 1_4:-57207657 | None:intergenic |
| GACGCACTGGGTGGCTCTAC+TGG | 0.372415 | 1_4:-57208095 | None:intergenic |
| CTCAACAATGCTTTCACCAT+TGG | 0.374554 | 1_4:+57207125 | None:intergenic |
| CATTGTATGGACATAGAAAA+TGG | 0.389529 | 1_4:-57207308 | None:intergenic |
| TGGTGAGAAACAAGACTTCA+TGG | 0.394662 | 1_4:-57208045 | None:intergenic |
| GCCGTGTTTGTGTCATCTGC+AGG | 0.398083 | 1_4:-57207414 | None:intergenic |
| CATCATCCACATTGTCCATT+TGG | 0.402335 | 1_4:-57207275 | None:intergenic |
| TAGTAGCATTGCCATTGTTC+CGG | 0.431642 | 1_4:-57207998 | None:intergenic |
| TGAGGGATCTTGAAAGAAAT+CGG | 0.433564 | 1_4:-57207756 | None:intergenic |
| AATTCAGCGTGGAATTCAAT+AGG | 0.439027 | 1_4:+57207661 | Msa0172230:CDS |
| TTGTTTCTCACCATTGTTGA+AGG | 0.439029 | 1_4:+57208055 | Msa0172230:CDS |
| TAACAACATCGGCGACGCAC+TGG | 0.453222 | 1_4:-57208108 | None:intergenic |
| AGATCAGGACTTTCAGGAAC+AGG | 0.454735 | 1_4:-57207861 | None:intergenic |
| CAATGGGAATGTTGTCCATT+TGG | 0.457011 | 1_4:-57207341 | None:intergenic |
| CCCCGTTGTGACGGTGGCCA+TGG | 0.457760 | 1_4:+57207386 | Msa0172230:CDS |
| TCGCCGATGTTGTTATCGAC+AGG | 0.458917 | 1_4:+57208116 | Msa0172230:CDS |
| TGACAATGTTGAAGACCAAA+TGG | 0.469140 | 1_4:+57207260 | Msa0172230:CDS |
| TATTGACAATGTTAAGATGA+AGG | 0.472539 | 1_4:+57207884 | Msa0172230:CDS |
| GTCATCTGCAGGGGCAGCCA+TGG | 0.473001 | 1_4:-57207403 | None:intergenic |
| TGAAGCTACGCCACTTTGAA+TGG | 0.476510 | 1_4:-57207616 | None:intergenic |
| TCAGAAACGGCAAGTGCAAT+GGG | 0.486716 | 1_4:-57207357 | None:intergenic |
| TTAAACAATATCAGAGGCTA+TGG | 0.488222 | 1_4:+57207520 | Msa0172230:CDS |
| GGACGAGATTGAACTGTTGA+AGG | 0.488252 | 1_4:+57207551 | Msa0172230:CDS |
| TTGTGAAGAAACAGATAAAA+GGG | 0.492865 | 1_4:+57207923 | Msa0172230:CDS |
| AGTGGTAGTAGCCGCGGTGG+TGG | 0.497730 | 1_4:-57207448 | None:intergenic |
| AAGGAAACACAAGATGACTT+TGG | 0.497734 | 1_4:+57207716 | Msa0172230:CDS |
| CAATGTGGATGAAGACCAAA+TGG | 0.497943 | 1_4:+57207326 | Msa0172230:CDS |
| ATCAGAAACGGCAAGTGCAA+TGG | 0.502613 | 1_4:-57207358 | None:intergenic |
| TCAGATCAAGGCTAGGTTGG+AGG | 0.516669 | 1_4:+57208220 | Msa0172230:CDS |
| TCGAAAATGGCTTGTTCCTG+AGG | 0.518443 | 1_4:-57207774 | None:intergenic |
| TTAACATTGTCAATAAGATC+AGG | 0.519347 | 1_4:-57207876 | None:intergenic |
| GGAGGTGTATTTGAATCGGT+TGG | 0.520311 | 1_4:+57208184 | Msa0172230:CDS |
| GTCATTGCCCCAAATCTTGT+GGG | 0.523632 | 1_4:-57207802 | None:intergenic |
| AACTGGAGGTGTATTTGAAT+CGG | 0.526700 | 1_4:+57208180 | Msa0172230:CDS |
| CGAAAATGGCTTGTTCCTGA+GGG | 0.533678 | 1_4:-57207773 | None:intergenic |
| CCGTGTTTGTGTCATCTGCA+GGG | 0.538021 | 1_4:-57207413 | None:intergenic |
| GATTTCTTTCAAGATCCCTC+AGG | 0.542535 | 1_4:+57207758 | Msa0172230:CDS |
| TGTCATTGCCCCAAATCTTG+TGG | 0.546121 | 1_4:-57207803 | None:intergenic |
| AATCGGTTGGAGTTGTTGCA+AGG | 0.547050 | 1_4:+57208197 | Msa0172230:CDS |
| AACAACATCGGCGACGCACT+GGG | 0.551267 | 1_4:-57208107 | None:intergenic |
| TCCAATAGTTCCTTCAACAA+TGG | 0.555130 | 1_4:-57208065 | None:intergenic |
| ATGGCAATGCTACTAGCATA+CGG | 0.556871 | 1_4:+57208006 | Msa0172230:CDS |
| TGGCAATGCTACTAGCATAC+GGG | 0.563532 | 1_4:+57208007 | Msa0172230:CDS |
| GGGATGAACAATGGTTAAAA+CGG | 0.566430 | 1_4:+57208147 | Msa0172230:CDS |
| CGCCGATGTTGTTATCGACA+GGG | 0.567511 | 1_4:+57208117 | Msa0172230:CDS |
| AGCCATGGCCACCGTCACAA+CGG | 0.580091 | 1_4:-57207388 | None:intergenic |
| CAATGTGGATGATGACGAAA+AGG | 0.583654 | 1_4:+57207284 | Msa0172230:CDS |
| GACTTTGGACAAAGGCAAAG+AGG | 0.584181 | 1_4:+57207731 | Msa0172230:CDS |
| GTTGTTGCAAGGTCAGATCA+AGG | 0.586461 | 1_4:+57208208 | Msa0172230:CDS |
| GACAAAATCCAAGAAACCAA+TGG | 0.589116 | 1_4:-57207141 | None:intergenic |
| TCAGAGGCTATGGACAAAGC+AGG | 0.591463 | 1_4:+57207530 | Msa0172230:CDS |
| TACGTAGCTTCTCAACAAGC+TGG | 0.592388 | 1_4:-57207686 | None:intergenic |
| AGGTCAGATCAAGGCTAGGT+TGG | 0.595411 | 1_4:+57208217 | Msa0172230:CDS |
| TGTTATCGACAGGGGAAGTG+AGG | 0.599112 | 1_4:+57208126 | Msa0172230:CDS |
| TTCTTCTTCGGATGACGAAG+AGG | 0.605501 | 1_4:-57207178 | None:intergenic |
| GAAATTTCCCACAAGATTTG+GGG | 0.610345 | 1_4:+57207795 | Msa0172230:CDS |
| GTTATCGACAGGGGAAGTGA+GGG | 0.615083 | 1_4:+57208127 | Msa0172230:CDS |
| GCAAATACTACCATTCAAAG+TGG | 0.615727 | 1_4:+57207606 | Msa0172230:CDS |
| CTGGATTACATTAAACAGCA+AGG | 0.616623 | 1_4:+57207579 | Msa0172230:CDS |
| GACGAGATTGAACTGTTGAA+GGG | 0.620700 | 1_4:+57207552 | Msa0172230:CDS |
| CACAAGATGACTTTGGACAA+AGG | 0.621465 | 1_4:+57207723 | Msa0172230:CDS |
| AACATCCAAAACGTCATGGT+CGG | 0.630878 | 1_4:-57207826 | None:intergenic |
| CGTGTTTGTGTCATCTGCAG+GGG | 0.638603 | 1_4:-57207412 | None:intergenic |
| CATCAACATCCAAAACGTCA+TGG | 0.640991 | 1_4:-57207830 | None:intergenic |
| CCCTGCAGATGACACAAACA+CGG | 0.644402 | 1_4:+57207413 | Msa0172230:CDS |
| TGCAAGGTCAGATCAAGGCT+AGG | 0.648837 | 1_4:+57208213 | Msa0172230:CDS |
| GGCAATGCTACTAGCATACG+GGG | 0.651150 | 1_4:+57208008 | Msa0172230:CDS |
| TGTTATAGTGGTAGTAGCCG+CGG | 0.655252 | 1_4:-57207454 | None:intergenic |
| GCCGATGTTGTTATCGACAG+GGG | 0.669203 | 1_4:+57208118 | Msa0172230:CDS |
| ATGAACAATGGTTAAAACGG+AGG | 0.670080 | 1_4:+57208150 | Msa0172230:CDS |
| GGGAAGTGAGGGATGAACAA+TGG | 0.671370 | 1_4:+57208138 | Msa0172230:CDS |
| CATGGCCACCGTCACAACGG+GGG | 0.676320 | 1_4:-57207385 | None:intergenic |
| CCATGGCCACCGTCACAACG+GGG | 0.678792 | 1_4:-57207386 | None:intergenic |
| ACGGTGTTAAACAATATCAG+AGG | 0.680774 | 1_4:+57207514 | Msa0172230:CDS |
| TCCCCTGTCGATAACAACAT+CGG | 0.682290 | 1_4:-57208119 | None:intergenic |
| AGTTATTCCCAAATTCAGCG+TGG | 0.688982 | 1_4:+57207650 | Msa0172230:CDS |
| TATAGTGGTAGTAGCCGCGG+TGG | 0.689187 | 1_4:-57207451 | None:intergenic |
| TGAAGACCAAATGGACAATG+TGG | 0.693003 | 1_4:+57207269 | Msa0172230:CDS |
| AACATCGGCGACGCACTGGG+TGG | 0.698538 | 1_4:-57208104 | None:intergenic |
| AACAAACACAGCCACCACCG+CGG | 0.714798 | 1_4:+57207437 | Msa0172230:CDS |
| AGCTTGTTGAGAAGCTACGT+AGG | 0.743250 | 1_4:+57207688 | Msa0172230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAACAAAAAGTATTCAGA+CGG | + | chr1_4:57207495-57207514 | Msa0172230:CDS | 20.0% |
| !!! | TATAACAAAAAGTATTCAGA+CGG | + | chr1_4:57207495-57207514 | Msa0172230:CDS | 20.0% |
| ! | TTAACATTGTCAATAAGATC+AGG | - | chr1_4:57207879-57207898 | None:intergenic | 25.0% |
| ! | TATTGACAATGTTAAGATGA+AGG | + | chr1_4:57207884-57207903 | Msa0172230:CDS | 25.0% |
| ! | ATTGTGAAGAAACAGATAAA+AGG | + | chr1_4:57207922-57207941 | Msa0172230:CDS | 25.0% |
| ! | TTGTGAAGAAACAGATAAAA+GGG | + | chr1_4:57207923-57207942 | Msa0172230:CDS | 25.0% |
| ! | TTAACATTGTCAATAAGATC+AGG | - | chr1_4:57207879-57207898 | None:intergenic | 25.0% |
| ! | TATTGACAATGTTAAGATGA+AGG | + | chr1_4:57207884-57207903 | Msa0172230:CDS | 25.0% |
| ! | ATTGTGAAGAAACAGATAAA+AGG | + | chr1_4:57207922-57207941 | Msa0172230:CDS | 25.0% |
| ! | TTGTGAAGAAACAGATAAAA+GGG | + | chr1_4:57207923-57207942 | Msa0172230:CDS | 25.0% |
| TTCTTCTTCTTCTTCTTCTT+CGG | - | chr1_4:57207193-57207212 | None:intergenic | 30.0% | |
| CATTGTATGGACATAGAAAA+TGG | - | chr1_4:57207311-57207330 | None:intergenic | 30.0% | |
| ! | TTTTCTATGTCCATACAATG+TGG | + | chr1_4:57207311-57207330 | Msa0172230:CDS | 30.0% |
| TTAAACAATATCAGAGGCTA+TGG | + | chr1_4:57207520-57207539 | Msa0172230:CDS | 30.0% | |
| TTCTTCTTCTTCTTCTTCTT+CGG | - | chr1_4:57207193-57207212 | None:intergenic | 30.0% | |
| CATTGTATGGACATAGAAAA+TGG | - | chr1_4:57207311-57207330 | None:intergenic | 30.0% | |
| ! | TTTTCTATGTCCATACAATG+TGG | + | chr1_4:57207311-57207330 | Msa0172230:CDS | 30.0% |
| TTAAACAATATCAGAGGCTA+TGG | + | chr1_4:57207520-57207539 | Msa0172230:CDS | 30.0% | |
| GACAAAATCCAAGAAACCAA+TGG | - | chr1_4:57207144-57207163 | None:intergenic | 35.0% | |
| TGACAATGTTGAAGACCAAA+TGG | + | chr1_4:57207260-57207279 | Msa0172230:CDS | 35.0% | |
| !! | TTTTGAGCGTGTTGTTATAG+TGG | - | chr1_4:57207469-57207488 | None:intergenic | 35.0% |
| ! | ACGGTGTTAAACAATATCAG+AGG | + | chr1_4:57207514-57207533 | Msa0172230:CDS | 35.0% |
| CTGGATTACATTAAACAGCA+AGG | + | chr1_4:57207579-57207598 | Msa0172230:CDS | 35.0% | |
| GCAAATACTACCATTCAAAG+TGG | + | chr1_4:57207606-57207625 | Msa0172230:CDS | 35.0% | |
| TTGAATTCCACGCTGAATTT+GGG | - | chr1_4:57207660-57207679 | None:intergenic | 35.0% | |
| ATTGAATTCCACGCTGAATT+TGG | - | chr1_4:57207661-57207680 | None:intergenic | 35.0% | |
| AATTCAGCGTGGAATTCAAT+AGG | + | chr1_4:57207661-57207680 | Msa0172230:CDS | 35.0% | |
| AGAAGCTACGTAGGTTAAAA+AGG | + | chr1_4:57207697-57207716 | Msa0172230:CDS | 35.0% | |
| AAGGAAACACAAGATGACTT+TGG | + | chr1_4:57207716-57207735 | Msa0172230:CDS | 35.0% | |
| TGAGGGATCTTGAAAGAAAT+CGG | - | chr1_4:57207759-57207778 | None:intergenic | 35.0% | |
| CTTGTGGGAAATTTCGAAAA+TGG | - | chr1_4:57207790-57207809 | None:intergenic | 35.0% | |
| TCGAAATTTCCCACAAGATT+TGG | + | chr1_4:57207793-57207812 | Msa0172230:CDS | 35.0% | |
| CGAAATTTCCCACAAGATTT+GGG | + | chr1_4:57207794-57207813 | Msa0172230:CDS | 35.0% | |
| GAAATTTCCCACAAGATTTG+GGG | + | chr1_4:57207795-57207814 | Msa0172230:CDS | 35.0% | |
| TCAATAAGATCAGGACTTTC+AGG | - | chr1_4:57207870-57207889 | None:intergenic | 35.0% | |
| ACGTGAACACAAAAAATGAC+CGG | + | chr1_4:57207979-57207998 | Msa0172230:CDS | 35.0% | |
| ACAAAAAATGACCGGAACAA+TGG | + | chr1_4:57207987-57208006 | Msa0172230:CDS | 35.0% | |
| ! | TTGTTTCTCACCATTGTTGA+AGG | + | chr1_4:57208055-57208074 | Msa0172230:CDS | 35.0% |
| ACCATTGTTGAAGGAACTAT+TGG | + | chr1_4:57208064-57208083 | Msa0172230:CDS | 35.0% | |
| TCCAATAGTTCCTTCAACAA+TGG | - | chr1_4:57208068-57208087 | None:intergenic | 35.0% | |
| GGGATGAACAATGGTTAAAA+CGG | + | chr1_4:57208147-57208166 | Msa0172230:CDS | 35.0% | |
| ATGAACAATGGTTAAAACGG+AGG | + | chr1_4:57208150-57208169 | Msa0172230:CDS | 35.0% | |
| ! | ATGGTTAAAACGGAGGATTT+TGG | + | chr1_4:57208157-57208176 | Msa0172230:CDS | 35.0% |
| ! | AACTGGAGGTGTATTTGAAT+CGG | + | chr1_4:57208180-57208199 | Msa0172230:CDS | 35.0% |
| GACAAAATCCAAGAAACCAA+TGG | - | chr1_4:57207144-57207163 | None:intergenic | 35.0% | |
| TGACAATGTTGAAGACCAAA+TGG | + | chr1_4:57207260-57207279 | Msa0172230:CDS | 35.0% | |
| !! | TTTTGAGCGTGTTGTTATAG+TGG | - | chr1_4:57207469-57207488 | None:intergenic | 35.0% |
| ! | ACGGTGTTAAACAATATCAG+AGG | + | chr1_4:57207514-57207533 | Msa0172230:CDS | 35.0% |
| CTGGATTACATTAAACAGCA+AGG | + | chr1_4:57207579-57207598 | Msa0172230:CDS | 35.0% | |
| GCAAATACTACCATTCAAAG+TGG | + | chr1_4:57207606-57207625 | Msa0172230:CDS | 35.0% | |
| TTGAATTCCACGCTGAATTT+GGG | - | chr1_4:57207660-57207679 | None:intergenic | 35.0% | |
| ATTGAATTCCACGCTGAATT+TGG | - | chr1_4:57207661-57207680 | None:intergenic | 35.0% | |
| AATTCAGCGTGGAATTCAAT+AGG | + | chr1_4:57207661-57207680 | Msa0172230:CDS | 35.0% | |
| AGAAGCTACGTAGGTTAAAA+AGG | + | chr1_4:57207697-57207716 | Msa0172230:CDS | 35.0% | |
| AAGGAAACACAAGATGACTT+TGG | + | chr1_4:57207716-57207735 | Msa0172230:CDS | 35.0% | |
| TGAGGGATCTTGAAAGAAAT+CGG | - | chr1_4:57207759-57207778 | None:intergenic | 35.0% | |
| CTTGTGGGAAATTTCGAAAA+TGG | - | chr1_4:57207790-57207809 | None:intergenic | 35.0% | |
| TCGAAATTTCCCACAAGATT+TGG | + | chr1_4:57207793-57207812 | Msa0172230:CDS | 35.0% | |
| CGAAATTTCCCACAAGATTT+GGG | + | chr1_4:57207794-57207813 | Msa0172230:CDS | 35.0% | |
| GAAATTTCCCACAAGATTTG+GGG | + | chr1_4:57207795-57207814 | Msa0172230:CDS | 35.0% | |
| TCAATAAGATCAGGACTTTC+AGG | - | chr1_4:57207870-57207889 | None:intergenic | 35.0% | |
| ACGTGAACACAAAAAATGAC+CGG | + | chr1_4:57207979-57207998 | Msa0172230:CDS | 35.0% | |
| ACAAAAAATGACCGGAACAA+TGG | + | chr1_4:57207987-57208006 | Msa0172230:CDS | 35.0% | |
| ! | TTGTTTCTCACCATTGTTGA+AGG | + | chr1_4:57208055-57208074 | Msa0172230:CDS | 35.0% |
| ACCATTGTTGAAGGAACTAT+TGG | + | chr1_4:57208064-57208083 | Msa0172230:CDS | 35.0% | |
| TCCAATAGTTCCTTCAACAA+TGG | - | chr1_4:57208068-57208087 | None:intergenic | 35.0% | |
| GGGATGAACAATGGTTAAAA+CGG | + | chr1_4:57208147-57208166 | Msa0172230:CDS | 35.0% | |
| ATGAACAATGGTTAAAACGG+AGG | + | chr1_4:57208150-57208169 | Msa0172230:CDS | 35.0% | |
| ! | ATGGTTAAAACGGAGGATTT+TGG | + | chr1_4:57208157-57208176 | Msa0172230:CDS | 35.0% |
| ! | AACTGGAGGTGTATTTGAAT+CGG | + | chr1_4:57208180-57208199 | Msa0172230:CDS | 35.0% |
| !! | TGCTTTCACCATTGGTTTCT+TGG | + | chr1_4:57207133-57207152 | Msa0172230:CDS | 40.0% |
| TGAAGACCAAATGGACAATG+TGG | + | chr1_4:57207269-57207288 | Msa0172230:CDS | 40.0% | |
| CATCATCCACATTGTCCATT+TGG | - | chr1_4:57207278-57207297 | None:intergenic | 40.0% | |
| ! | CAATGTGGATGATGACGAAA+AGG | + | chr1_4:57207284-57207303 | Msa0172230:CDS | 40.0% |
| TGGTCTTCATCCACATTGTA+TGG | - | chr1_4:57207324-57207343 | None:intergenic | 40.0% | |
| CAATGTGGATGAAGACCAAA+TGG | + | chr1_4:57207326-57207345 | Msa0172230:CDS | 40.0% | |
| CAATGGGAATGTTGTCCATT+TGG | - | chr1_4:57207344-57207363 | None:intergenic | 40.0% | |
| GACGAGATTGAACTGTTGAA+GGG | + | chr1_4:57207552-57207571 | Msa0172230:CDS | 40.0% | |
| TGAACTGTTGAAGGGATATC+TGG | + | chr1_4:57207560-57207579 | Msa0172230:CDS | 40.0% | |
| AGTTATTCCCAAATTCAGCG+TGG | + | chr1_4:57207650-57207669 | Msa0172230:CDS | 40.0% | |
| CACAAGATGACTTTGGACAA+AGG | + | chr1_4:57207723-57207742 | Msa0172230:CDS | 40.0% | |
| GATTTCTTTCAAGATCCCTC+AGG | + | chr1_4:57207758-57207777 | Msa0172230:CDS | 40.0% | |
| AACATCCAAAACGTCATGGT+CGG | - | chr1_4:57207829-57207848 | None:intergenic | 40.0% | |
| CATCAACATCCAAAACGTCA+TGG | - | chr1_4:57207833-57207852 | None:intergenic | 40.0% | |
| TAGTAGCATTGCCATTGTTC+CGG | - | chr1_4:57208001-57208020 | None:intergenic | 40.0% | |
| ATGGCAATGCTACTAGCATA+CGG | + | chr1_4:57208006-57208025 | Msa0172230:CDS | 40.0% | |
| TGGTGAGAAACAAGACTTCA+TGG | - | chr1_4:57208048-57208067 | None:intergenic | 40.0% | |
| !!! | AAAACGGAGGATTTTGGAAC+TGG | + | chr1_4:57208163-57208182 | Msa0172230:CDS | 40.0% |
| !! | TGCTTTCACCATTGGTTTCT+TGG | + | chr1_4:57207133-57207152 | Msa0172230:CDS | 40.0% |
| TGAAGACCAAATGGACAATG+TGG | + | chr1_4:57207269-57207288 | Msa0172230:CDS | 40.0% | |
| CATCATCCACATTGTCCATT+TGG | - | chr1_4:57207278-57207297 | None:intergenic | 40.0% | |
| ! | CAATGTGGATGATGACGAAA+AGG | + | chr1_4:57207284-57207303 | Msa0172230:CDS | 40.0% |
| TGGTCTTCATCCACATTGTA+TGG | - | chr1_4:57207324-57207343 | None:intergenic | 40.0% | |
| CAATGTGGATGAAGACCAAA+TGG | + | chr1_4:57207326-57207345 | Msa0172230:CDS | 40.0% | |
| CAATGGGAATGTTGTCCATT+TGG | - | chr1_4:57207344-57207363 | None:intergenic | 40.0% | |
| GACGAGATTGAACTGTTGAA+GGG | + | chr1_4:57207552-57207571 | Msa0172230:CDS | 40.0% | |
| TGAACTGTTGAAGGGATATC+TGG | + | chr1_4:57207560-57207579 | Msa0172230:CDS | 40.0% | |
| AGTTATTCCCAAATTCAGCG+TGG | + | chr1_4:57207650-57207669 | Msa0172230:CDS | 40.0% | |
| CACAAGATGACTTTGGACAA+AGG | + | chr1_4:57207723-57207742 | Msa0172230:CDS | 40.0% | |
| GATTTCTTTCAAGATCCCTC+AGG | + | chr1_4:57207758-57207777 | Msa0172230:CDS | 40.0% | |
| AACATCCAAAACGTCATGGT+CGG | - | chr1_4:57207829-57207848 | None:intergenic | 40.0% | |
| CATCAACATCCAAAACGTCA+TGG | - | chr1_4:57207833-57207852 | None:intergenic | 40.0% | |
| TAGTAGCATTGCCATTGTTC+CGG | - | chr1_4:57208001-57208020 | None:intergenic | 40.0% | |
| ATGGCAATGCTACTAGCATA+CGG | + | chr1_4:57208006-57208025 | Msa0172230:CDS | 40.0% | |
| TGGTGAGAAACAAGACTTCA+TGG | - | chr1_4:57208048-57208067 | None:intergenic | 40.0% | |
| !!! | AAAACGGAGGATTTTGGAAC+TGG | + | chr1_4:57208163-57208182 | Msa0172230:CDS | 40.0% |
| TTCTTCTTCGGATGACGAAG+AGG | - | chr1_4:57207181-57207200 | None:intergenic | 45.0% | |
| TCAGAAACGGCAAGTGCAAT+GGG | - | chr1_4:57207360-57207379 | None:intergenic | 45.0% | |
| ATCAGAAACGGCAAGTGCAA+TGG | - | chr1_4:57207361-57207380 | None:intergenic | 45.0% | |
| TGTTATAGTGGTAGTAGCCG+CGG | - | chr1_4:57207457-57207476 | None:intergenic | 45.0% | |
| GGACGAGATTGAACTGTTGA+AGG | + | chr1_4:57207551-57207570 | Msa0172230:CDS | 45.0% | |
| ! | TGAAGCTACGCCACTTTGAA+TGG | - | chr1_4:57207619-57207638 | None:intergenic | 45.0% |
| TACGTAGCTTCTCAACAAGC+TGG | - | chr1_4:57207689-57207708 | None:intergenic | 45.0% | |
| !! | AGCTTGTTGAGAAGCTACGT+AGG | + | chr1_4:57207688-57207707 | Msa0172230:CDS | 45.0% |
| GACTTTGGACAAAGGCAAAG+AGG | + | chr1_4:57207731-57207750 | Msa0172230:CDS | 45.0% | |
| !! | CGAAAATGGCTTGTTCCTGA+GGG | - | chr1_4:57207776-57207795 | None:intergenic | 45.0% |
| !! | TCGAAAATGGCTTGTTCCTG+AGG | - | chr1_4:57207777-57207796 | None:intergenic | 45.0% |
| GTCATTGCCCCAAATCTTGT+GGG | - | chr1_4:57207805-57207824 | None:intergenic | 45.0% | |
| TGTCATTGCCCCAAATCTTG+TGG | - | chr1_4:57207806-57207825 | None:intergenic | 45.0% | |
| AGATCAGGACTTTCAGGAAC+AGG | - | chr1_4:57207864-57207883 | None:intergenic | 45.0% | |
| TGGCAATGCTACTAGCATAC+GGG | + | chr1_4:57208007-57208026 | Msa0172230:CDS | 45.0% | |
| TCCCCTGTCGATAACAACAT+CGG | - | chr1_4:57208122-57208141 | None:intergenic | 45.0% | |
| ! | GGAGGTGTATTTGAATCGGT+TGG | + | chr1_4:57208184-57208203 | Msa0172230:CDS | 45.0% |
| AATCGGTTGGAGTTGTTGCA+AGG | + | chr1_4:57208197-57208216 | Msa0172230:CDS | 45.0% | |
| GTTGTTGCAAGGTCAGATCA+AGG | + | chr1_4:57208208-57208227 | Msa0172230:CDS | 45.0% | |
| TTCTTCTTCGGATGACGAAG+AGG | - | chr1_4:57207181-57207200 | None:intergenic | 45.0% | |
| TCAGAAACGGCAAGTGCAAT+GGG | - | chr1_4:57207360-57207379 | None:intergenic | 45.0% | |
| ATCAGAAACGGCAAGTGCAA+TGG | - | chr1_4:57207361-57207380 | None:intergenic | 45.0% | |
| TGTTATAGTGGTAGTAGCCG+CGG | - | chr1_4:57207457-57207476 | None:intergenic | 45.0% | |
| GGACGAGATTGAACTGTTGA+AGG | + | chr1_4:57207551-57207570 | Msa0172230:CDS | 45.0% | |
| ! | TGAAGCTACGCCACTTTGAA+TGG | - | chr1_4:57207619-57207638 | None:intergenic | 45.0% |
| TACGTAGCTTCTCAACAAGC+TGG | - | chr1_4:57207689-57207708 | None:intergenic | 45.0% | |
| !! | AGCTTGTTGAGAAGCTACGT+AGG | + | chr1_4:57207688-57207707 | Msa0172230:CDS | 45.0% |
| GACTTTGGACAAAGGCAAAG+AGG | + | chr1_4:57207731-57207750 | Msa0172230:CDS | 45.0% | |
| !! | CGAAAATGGCTTGTTCCTGA+GGG | - | chr1_4:57207776-57207795 | None:intergenic | 45.0% |
| !! | TCGAAAATGGCTTGTTCCTG+AGG | - | chr1_4:57207777-57207796 | None:intergenic | 45.0% |
| GTCATTGCCCCAAATCTTGT+GGG | - | chr1_4:57207805-57207824 | None:intergenic | 45.0% | |
| TGTCATTGCCCCAAATCTTG+TGG | - | chr1_4:57207806-57207825 | None:intergenic | 45.0% | |
| AGATCAGGACTTTCAGGAAC+AGG | - | chr1_4:57207864-57207883 | None:intergenic | 45.0% | |
| TGGCAATGCTACTAGCATAC+GGG | + | chr1_4:57208007-57208026 | Msa0172230:CDS | 45.0% | |
| TCCCCTGTCGATAACAACAT+CGG | - | chr1_4:57208122-57208141 | None:intergenic | 45.0% | |
| ! | GGAGGTGTATTTGAATCGGT+TGG | + | chr1_4:57208184-57208203 | Msa0172230:CDS | 45.0% |
| AATCGGTTGGAGTTGTTGCA+AGG | + | chr1_4:57208197-57208216 | Msa0172230:CDS | 45.0% | |
| GTTGTTGCAAGGTCAGATCA+AGG | + | chr1_4:57208208-57208227 | Msa0172230:CDS | 45.0% | |
| AACGGGGGATGCATCAGAAA+CGG | - | chr1_4:57207373-57207392 | None:intergenic | 50.0% | |
| CGTGTTTGTGTCATCTGCAG+GGG | - | chr1_4:57207415-57207434 | None:intergenic | 50.0% | |
| CCGTGTTTGTGTCATCTGCA+GGG | - | chr1_4:57207416-57207435 | None:intergenic | 50.0% | |
| CCCTGCAGATGACACAAACA+CGG | + | chr1_4:57207413-57207432 | Msa0172230:CDS | 50.0% | |
| TCAGAGGCTATGGACAAAGC+AGG | + | chr1_4:57207530-57207549 | Msa0172230:CDS | 50.0% | |
| ! | TGACACCGACCATGACGTTT+TGG | + | chr1_4:57207821-57207840 | Msa0172230:CDS | 50.0% |
| GGCAATGCTACTAGCATACG+GGG | + | chr1_4:57208008-57208027 | Msa0172230:CDS | 50.0% | |
| TCGCCGATGTTGTTATCGAC+AGG | + | chr1_4:57208116-57208135 | Msa0172230:CDS | 50.0% | |
| CGCCGATGTTGTTATCGACA+GGG | + | chr1_4:57208117-57208136 | Msa0172230:CDS | 50.0% | |
| GCCGATGTTGTTATCGACAG+GGG | + | chr1_4:57208118-57208137 | Msa0172230:CDS | 50.0% | |
| TGTTATCGACAGGGGAAGTG+AGG | + | chr1_4:57208126-57208145 | Msa0172230:CDS | 50.0% | |
| GTTATCGACAGGGGAAGTGA+GGG | + | chr1_4:57208127-57208146 | Msa0172230:CDS | 50.0% | |
| GGGAAGTGAGGGATGAACAA+TGG | + | chr1_4:57208138-57208157 | Msa0172230:CDS | 50.0% | |
| !!! | ACGGAGGATTTTGGAACTGG+AGG | + | chr1_4:57208166-57208185 | Msa0172230:CDS | 50.0% |
| TGCAAGGTCAGATCAAGGCT+AGG | + | chr1_4:57208213-57208232 | Msa0172230:CDS | 50.0% | |
| AGGTCAGATCAAGGCTAGGT+TGG | + | chr1_4:57208217-57208236 | Msa0172230:CDS | 50.0% | |
| ! | TCAGATCAAGGCTAGGTTGG+AGG | + | chr1_4:57208220-57208239 | Msa0172230:CDS | 50.0% |
| AACGGGGGATGCATCAGAAA+CGG | - | chr1_4:57207373-57207392 | None:intergenic | 50.0% | |
| CGTGTTTGTGTCATCTGCAG+GGG | - | chr1_4:57207415-57207434 | None:intergenic | 50.0% | |
| CCGTGTTTGTGTCATCTGCA+GGG | - | chr1_4:57207416-57207435 | None:intergenic | 50.0% | |
| CCCTGCAGATGACACAAACA+CGG | + | chr1_4:57207413-57207432 | Msa0172230:CDS | 50.0% | |
| TCAGAGGCTATGGACAAAGC+AGG | + | chr1_4:57207530-57207549 | Msa0172230:CDS | 50.0% | |
| ! | TGACACCGACCATGACGTTT+TGG | + | chr1_4:57207821-57207840 | Msa0172230:CDS | 50.0% |
| GGCAATGCTACTAGCATACG+GGG | + | chr1_4:57208008-57208027 | Msa0172230:CDS | 50.0% | |
| TCGCCGATGTTGTTATCGAC+AGG | + | chr1_4:57208116-57208135 | Msa0172230:CDS | 50.0% | |
| CGCCGATGTTGTTATCGACA+GGG | + | chr1_4:57208117-57208136 | Msa0172230:CDS | 50.0% | |
| GCCGATGTTGTTATCGACAG+GGG | + | chr1_4:57208118-57208137 | Msa0172230:CDS | 50.0% | |
| TGTTATCGACAGGGGAAGTG+AGG | + | chr1_4:57208126-57208145 | Msa0172230:CDS | 50.0% | |
| GTTATCGACAGGGGAAGTGA+GGG | + | chr1_4:57208127-57208146 | Msa0172230:CDS | 50.0% | |
| GGGAAGTGAGGGATGAACAA+TGG | + | chr1_4:57208138-57208157 | Msa0172230:CDS | 50.0% | |
| !!! | ACGGAGGATTTTGGAACTGG+AGG | + | chr1_4:57208166-57208185 | Msa0172230:CDS | 50.0% |
| TGCAAGGTCAGATCAAGGCT+AGG | + | chr1_4:57208213-57208232 | Msa0172230:CDS | 50.0% | |
| AGGTCAGATCAAGGCTAGGT+TGG | + | chr1_4:57208217-57208236 | Msa0172230:CDS | 50.0% | |
| ! | TCAGATCAAGGCTAGGTTGG+AGG | + | chr1_4:57208220-57208239 | Msa0172230:CDS | 50.0% |
| TGATGCATCCCCCGTTGTGA+CGG | + | chr1_4:57207377-57207396 | Msa0172230:CDS | 55.0% | |
| GCCGTGTTTGTGTCATCTGC+AGG | - | chr1_4:57207417-57207436 | None:intergenic | 55.0% | |
| AACAAACACAGCCACCACCG+CGG | + | chr1_4:57207437-57207456 | Msa0172230:CDS | 55.0% | |
| TATAGTGGTAGTAGCCGCGG+TGG | - | chr1_4:57207454-57207473 | None:intergenic | 55.0% | |
| AACAACATCGGCGACGCACT+GGG | - | chr1_4:57208110-57208129 | None:intergenic | 55.0% | |
| TAACAACATCGGCGACGCAC+TGG | - | chr1_4:57208111-57208130 | None:intergenic | 55.0% | |
| TGATGCATCCCCCGTTGTGA+CGG | + | chr1_4:57207377-57207396 | Msa0172230:CDS | 55.0% | |
| GCCGTGTTTGTGTCATCTGC+AGG | - | chr1_4:57207417-57207436 | None:intergenic | 55.0% | |
| AACAAACACAGCCACCACCG+CGG | + | chr1_4:57207437-57207456 | Msa0172230:CDS | 55.0% | |
| TATAGTGGTAGTAGCCGCGG+TGG | - | chr1_4:57207454-57207473 | None:intergenic | 55.0% | |
| AACAACATCGGCGACGCACT+GGG | - | chr1_4:57208110-57208129 | None:intergenic | 55.0% | |
| TAACAACATCGGCGACGCAC+TGG | - | chr1_4:57208111-57208130 | None:intergenic | 55.0% | |
| AGCCATGGCCACCGTCACAA+CGG | - | chr1_4:57207391-57207410 | None:intergenic | 60.0% | |
| AGCCATGGCCACCGTCACAA+CGG | - | chr1_4:57207391-57207410 | None:intergenic | 60.0% | |
| TGCATCCCCCGTTGTGACGG+TGG | + | chr1_4:57207380-57207399 | Msa0172230:CDS | 65.0% | |
| CATGGCCACCGTCACAACGG+GGG | - | chr1_4:57207388-57207407 | None:intergenic | 65.0% | |
| CCATGGCCACCGTCACAACG+GGG | - | chr1_4:57207389-57207408 | None:intergenic | 65.0% | |
| GCCATGGCCACCGTCACAAC+GGG | - | chr1_4:57207390-57207409 | None:intergenic | 65.0% | |
| GTCATCTGCAGGGGCAGCCA+TGG | - | chr1_4:57207406-57207425 | None:intergenic | 65.0% | |
| AGTGGTAGTAGCCGCGGTGG+TGG | - | chr1_4:57207451-57207470 | None:intergenic | 65.0% | |
| ! | GACGCACTGGGTGGCTCTAC+TGG | - | chr1_4:57208098-57208117 | None:intergenic | 65.0% |
| AACATCGGCGACGCACTGGG+TGG | - | chr1_4:57208107-57208126 | None:intergenic | 65.0% | |
| TGCATCCCCCGTTGTGACGG+TGG | + | chr1_4:57207380-57207399 | Msa0172230:CDS | 65.0% | |
| CATGGCCACCGTCACAACGG+GGG | - | chr1_4:57207388-57207407 | None:intergenic | 65.0% | |
| CCATGGCCACCGTCACAACG+GGG | - | chr1_4:57207389-57207408 | None:intergenic | 65.0% | |
| GCCATGGCCACCGTCACAAC+GGG | - | chr1_4:57207390-57207409 | None:intergenic | 65.0% | |
| GTCATCTGCAGGGGCAGCCA+TGG | - | chr1_4:57207406-57207425 | None:intergenic | 65.0% | |
| AGTGGTAGTAGCCGCGGTGG+TGG | - | chr1_4:57207451-57207470 | None:intergenic | 65.0% | |
| ! | GACGCACTGGGTGGCTCTAC+TGG | - | chr1_4:57208098-57208117 | None:intergenic | 65.0% |
| AACATCGGCGACGCACTGGG+TGG | - | chr1_4:57208107-57208126 | None:intergenic | 65.0% | |
| CCCCGTTGTGACGGTGGCCA+TGG | + | chr1_4:57207386-57207405 | Msa0172230:CDS | 70.0% | |
| CCCCGTTGTGACGGTGGCCA+TGG | + | chr1_4:57207386-57207405 | Msa0172230:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57207132 | 57208265 | 57207132 | ID=Msa0172230;Name=Msa0172230 |
| chr1_4 | mRNA | 57207132 | 57208265 | 57207132 | ID=Msa0172230-mRNA-1;Parent=Msa0172230;Name=Msa0172230-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|377 |
| chr1_4 | exon | 57207132 | 57208265 | 57207132 | ID=Msa0172230-mRNA-1:exon:17479;Parent=Msa0172230-mRNA-1 |
| chr1_4 | CDS | 57207132 | 57208265 | 57207132 | ID=Msa0172230-mRNA-1:cds;Parent=Msa0172230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
