AlfalfaGEDB | Msa0173360

M. sativa cultivar zhongmu-4 / Msa0173360

KEGG: K00924|K03083
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0042538 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0047484 GO:0048507 GO:0048518 GO:0048532 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1901000 GO:1901002 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173360	P51137.1	99.757	411	1	0	1	411	1	411	0.0	852

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173360	sp\|P51137\|MSK1_MEDSA	99.757	411	1	0	1	411	1	411	0.0	852

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173360	G7IAA8	99.513	411	2	0	1	411	1	411	0.0	851

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0173360	MtrunA17_Chr1g0193081	99.513	411	2	0	1	411	1	411	0.0	851
Msa0173360	MtrunA17_Chr7g0270371	87.105	411	50	3	1	410	2	410	0.0	743
Msa0173360	MtrunA17_Chr1g0194201	83.902	410	65	1	1	410	2	410	0.0	731
Msa0173360	MtrunA17_Chr7g0246591	77.720	386	79	1	25	403	84	469	0.0	646
Msa0173360	MtrunA17_Chr8g0350311	77.720	386	79	1	25	403	82	467	0.0	643
Msa0173360	MtrunA17_Chr2g0277011	79.570	372	76	0	40	411	55	426	0.0	642
Msa0173360	MtrunA17_Chr2g0320011	80.654	367	70	1	39	405	52	417	0.0	638
Msa0173360	MtrunA17_Chr2g0284091	75.946	370	88	1	36	405	1	369	0.0	615
Msa0173360	MtrunA17_Chr4g0045841	35.034	294	172	8	81	364	61	345	8.16e-56	188
Msa0173360	MtrunA17_Chr3g0141871	34.853	307	183	8	75	371	32	331	3.52e-53	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0173360	AT5G26751.1	92.457	411	25	2	1	411	1	405	785
Msa0173360	AT3G05840.2	90.754	411	36	1	1	411	1	409	782
Msa0173360	AT3G05840.1	90.754	411	36	1	1	411	1	409	782
Msa0173360	AT5G14640.1	84.428	411	63	1	1	411	1	410	731
Msa0173360	AT5G14640.2	84.428	411	63	1	1	411	1	410	731
Msa0173360	AT4G00720.1	76.559	401	87	1	10	403	66	466	653
Msa0173360	AT1G57870.1	75.827	393	89	1	25	411	26	418	635
Msa0173360	AT1G57870.4	75.827	393	89	1	25	411	26	418	635
Msa0173360	AT1G57870.2	75.827	393	89	1	25	411	26	418	635
Msa0173360	AT1G57870.3	75.827	393	89	1	25	411	26	418	635

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Find 162 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCTTCAAGACAAG+AGG	0.602316	1_4:-58590251	Msa0173360:CDS
AAAATAATAATAATTGGAGT+GGG	0.551878	1_4:-58591872	Msa0173360:five_prime_UTR
AAATGAGTGATATGAAAATT+AGG	0.201042	1_4:-58591121	Msa0173360:CDS
AACATTCACAACACATGCTT+TGG	0.345924	1_4:-58591757	Msa0173360:five_prime_UTR
AACTGGTTCCAGAGCATGCG+AGG	0.593496	1_4:-58588324	Msa0173360:CDS
AAGAATAGCACAGGAAATAA+CGG	0.491537	1_4:-58587796	Msa0173360:three_prime_UTR
AAGACAAGAGGTACAAGAAC+CGG	0.403254	1_4:-58590239	Msa0173360:CDS
AAGCTCATCGAAGAAAGGAT+GGG	0.653895	1_4:+58588557	None:intergenic
AATGAGTGATATGAAAATTA+GGG	0.392488	1_4:-58591120	Msa0173360:CDS
AATGTCATACCAATAGATTT+TGG	0.301101	1_4:+58589875	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGATCGTTGTAATTGAA+CGG	+	chr1_4:58587872-58587891	None:intergenic	30.0%
ATTACAACGATCTTCAGTTT+AGG	-	chr1_4:58587876-58587895	Msa0173360:three_prime_UTR	30.0%
TTACAACGATCTTCAGTTTA+GGG	-	chr1_4:58587877-58587896	Msa0173360:three_prime_UTR	30.0%
TTAATTCATGTGGGTCTATT+TGG	-	chr1_4:58587991-58588010	Msa0173360:three_prime_UTR	30.0%
GATGTAAATTTCATTCTTGC+AGG	-	chr1_4:58588063-58588082	Msa0173360:three_prime_UTR	30.0%
GATGAGTGGTTAAAATTGAA+AGG	-	chr1_4:58588088-58588107	Msa0173360:three_prime_UTR	30.0%
TAAAATTGAAAGGGTTTCAG+TGG	-	chr1_4:58588098-58588117	Msa0173360:three_prime_UTR	30.0%
TTACATCTTTCGTATCTTGT+AGG	-	chr1_4:58588325-58588344	Msa0173360:CDS	30.0%
CATATCATTGTCACTACTAT+TGG	-	chr1_4:58588392-58588411	Msa0173360:intron	30.0%
ATGTCCCTACAAAATAGTTA+TGG	-	chr1_4:58588525-58588544	Msa0173360:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	58587451	58591903	58587451	ID=Msa0173360;Name=Msa0173360
chr1_4	mRNA	58587451	58591903	58587451	ID=Msa0173360-mRNA-1;Parent=Msa0173360;Name=Msa0173360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=198\|1\|1\|1\|0.91\|0.84\|13\|846\|411
chr1_4	exon	58587451	58588379	58587451	ID=Msa0173360-mRNA-1:exon:18243;Parent=Msa0173360-mRNA-1
chr1_4	exon	58588490	58588592	58588490	ID=Msa0173360-mRNA-1:exon:18242;Parent=Msa0173360-mRNA-1
chr1_4	exon	58588789	58588872	58588789	ID=Msa0173360-mRNA-1:exon:18241;Parent=Msa0173360-mRNA-1
chr1_4	exon	58588970	58589065	58588970	ID=Msa0173360-mRNA-1:exon:18240;Parent=Msa0173360-mRNA-1
chr1_4	exon	58589336	58589386	58589336	ID=Msa0173360-mRNA-1:exon:18239;Parent=Msa0173360-mRNA-1
chr1_4	exon	58589470	58589610	58589470	ID=Msa0173360-mRNA-1:exon:18238;Parent=Msa0173360-mRNA-1
chr1_4	exon	58589733	58589789	58589733	ID=Msa0173360-mRNA-1:exon:18237;Parent=Msa0173360-mRNA-1
chr1_4	exon	58589885	58589959	58589885	ID=Msa0173360-mRNA-1:exon:18236;Parent=Msa0173360-mRNA-1
chr1_4	exon	58590038	58590310	58590038	ID=Msa0173360-mRNA-1:exon:18235;Parent=Msa0173360-mRNA-1
chr1_4	exon	58590420	58590479	58590420	ID=Msa0173360-mRNA-1:exon:18234;Parent=Msa0173360-mRNA-1
chr1_4	exon	58590915	58591007	58590915	ID=Msa0173360-mRNA-1:exon:18233;Parent=Msa0173360-mRNA-1
chr1_4	exon	58591112	58591269	58591112	ID=Msa0173360-mRNA-1:exon:18232;Parent=Msa0173360-mRNA-1
chr1_4	exon	58591744	58591903	58591744	ID=Msa0173360-mRNA-1:exon:18231;Parent=Msa0173360-mRNA-1
chr1_4	five_prime_UTR	58591744	58591903	58591744	ID=Msa0173360-mRNA-1:five_prime_utr;Parent=Msa0173360-mRNA-1
chr1_4	five_prime_UTR	58591232	58591269	58591232	ID=Msa0173360-mRNA-1:five_prime_utr;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58591112	58591231	58591112	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58590915	58591007	58590915	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58590420	58590479	58590420	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58590038	58590310	58590038	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58589885	58589959	58589885	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58589733	58589789	58589733	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58589470	58589610	58589470	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58589336	58589386	58589336	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58588970	58589065	58588970	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58588789	58588872	58588789	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58588490	58588592	58588490	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	CDS	58588297	58588379	58588297	ID=Msa0173360-mRNA-1:cds;Parent=Msa0173360-mRNA-1
chr1_4	three_prime_UTR	58587451	58588296	58587451	ID=Msa0173360-mRNA-1:three_prime_utr;Parent=Msa0173360-mRNA-1

Gene Sequence

>Msa0173360

ATGGCGTCGGTTGGTGTTGCACCAACTTCAGGTTTTAGAGAAGTCCTTGGTGATGGTGAAATTGGTGTTGATGATATATTGCCAGAGGAAATGAGTGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACCGTTGTTGACGGCAATGGAACGGAGACAGGACATATCATTGTCACTACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACCGGTGAAACCGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACAATGCGACTGCTTGATCACCCGAATGTCGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTGAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGCGTGATTAAGCATTACAGCAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACATACCAGATCTTTAGAGCATTATCTTATATTCATCGTTGCATTGGAGTCTGTCATCGGGATATCAAGCCCCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGCGACTTTGGAAGTGCGAAAGTCTTGGTTAAAGGCGAACCAAATATATCGTATATATGTTCTAGATACTACAGAGCACCCGAGCTTATTTTTGGAGCAACTGAATATACTACTGCTATTGATGTATGGTCTGTTGGTTGTGTTTTGGCTGAGCTGCTGCTTGGACAGCCATTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCGACAAGAGAAGAAATTAAATGCATGAATCCTAATTATACCGAATTTAAATTCCCTCAAATCAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTGCAGAAGCTGTTGATTTGGTATCAAGATTATTACAATACTCCCCAAACCTGCGGTGCCAAGCTTTAGATTGCTTGACCCATCCTTTCTTCGATGAGCTTCGTGACCCAAATGCTCGCTTGCCAACTGGCCGTTTCCTCCCACCACTGTTTAACTTCAAACCTCACGAACTGAAAGGAGTTCCAGTCGAGACCTTGATGAAACTGGTTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTAA

Protein sequence

>Msa0173360

MASVGVAPTSGFREVLGDGEIGVDDILPEEMSDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYSKLNQRMPMIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDLVSRLLQYSPNLRCQALDCLTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFLGL*