AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174020 MtrunA17_Chr1g0194301 95.324 278 13 0 1 278 1 278 0.0 549
Msa0174020 MtrunA17_Chr1g0194291 56.641 256 93 5 26 276 14 256 6.97e-91 270
Msa0174020 MtrunA17_Chr4g0068921 74.468 141 36 0 26 166 17 157 2.78e-72 220
Msa0174020 MtrunA17_Chr2g0293911 70.748 147 43 0 20 166 11 157 3.30e-70 219
Msa0174020 MtrunA17_Chr1g0209661 56.287 167 70 1 33 199 27 190 1.40e-67 212
Msa0174020 MtrunA17_Chr7g0228231 68.966 116 36 0 33 148 14 129 1.27e-57 183
Msa0174020 MtrunA17_Chr6g0450101 72.222 108 30 0 33 140 14 121 4.40e-57 182
Msa0174020 MtrunA17_Chr1g0168661 69.159 107 33 0 32 138 20 126 1.39e-51 169
Msa0174020 MtrunA17_Chr1g0186061 60.833 120 45 1 19 138 8 125 3.48e-49 163
Msa0174020 MtrunA17_Chr2g0327821 59.633 109 44 0 33 141 6 114 8.84e-46 154
Msa0174020 MtrunA17_Chr4g0030881 56.452 124 44 2 25 141 2 122 2.06e-44 151
Msa0174020 MtrunA17_Chr8g0346561 59.483 116 45 1 33 146 12 127 1.16e-43 150
Msa0174020 MtrunA17_Chr5g0410961 52.459 122 58 0 29 150 8 129 4.02e-43 150
Msa0174020 MtrunA17_Chr3g0099131 57.944 107 45 0 33 139 41 147 7.10e-43 153
Msa0174020 MtrunA17_Chr3g0080861 60.185 108 43 0 31 138 35 142 1.01e-42 152
Msa0174020 MtrunA17_Chr2g0323411 43.017 179 88 4 29 205 8 174 1.53e-41 145
Msa0174020 MtrunA17_Chr1g0193371 55.172 116 52 0 33 148 12 127 2.25e-41 146
Msa0174020 MtrunA17_Chr4g0039971 52.000 125 59 1 33 156 13 137 2.99e-41 145
Msa0174020 MtrunA17_Chr8g0354661 56.481 108 47 0 31 138 35 142 3.25e-41 149
Msa0174020 MtrunA17_Chr7g0275911 57.547 106 45 0 33 138 12 117 3.64e-41 142
Msa0174020 MtrunA17_Chr5g0395281 50.388 129 63 1 29 156 8 136 5.75e-41 143
Msa0174020 MtrunA17_Chr4g0057031 53.913 115 53 0 29 143 8 122 7.64e-41 142
Msa0174020 MtrunA17_Chr3g0115821 50.000 134 66 1 29 162 8 140 7.87e-41 144
Msa0174020 MtrunA17_Chr4g0070611 55.963 109 48 0 33 141 12 120 8.36e-41 143
Msa0174020 MtrunA17_Chr1g0187761 54.955 111 50 0 29 139 8 118 1.15e-40 141
Msa0174020 MtrunA17_Chr1g0154031 57.547 106 45 0 33 138 76 181 1.20e-40 145
Msa0174020 MtrunA17_Chr3g0131121 60.784 102 40 0 35 136 14 115 1.22e-40 142
Msa0174020 MtrunA17_Chr1g0203411 56.075 107 47 0 33 139 12 118 1.47e-40 142
Msa0174020 MtrunA17_Chr4g0070641 55.963 109 48 0 33 141 12 120 1.65e-40 138
Msa0174020 MtrunA17_Chr2g0281071 54.054 111 51 0 33 143 13 123 3.83e-40 142
Msa0174020 MtrunA17_Chr8g0343831 57.009 107 46 0 33 139 8 114 5.31e-40 139
Msa0174020 MtrunA17_Chr4g0055981 48.936 141 63 1 1 141 32 163 6.54e-40 138
Msa0174020 MtrunA17_Chr7g0261281 43.791 153 82 1 29 181 8 156 7.08e-40 140
Msa0174020 MtrunA17_Chr7g0217741 54.955 111 50 0 33 143 12 122 7.78e-40 140
Msa0174020 MtrunA17_Chr4g0048511 53.153 111 52 0 33 143 13 123 7.92e-40 142
Msa0174020 MtrunA17_Chr3g0110351 52.174 115 55 0 29 143 8 122 8.41e-40 140
Msa0174020 MtrunA17_Chr2g0328771 56.481 108 47 0 33 140 20 127 8.44e-40 140
Msa0174020 MtrunA17_Chr1g0180391 55.660 106 47 0 33 138 19 124 9.26e-40 138
Msa0174020 MtrunA17_Chr5g0435101 45.185 135 74 0 29 163 7 141 1.10e-39 137
Msa0174020 MtrunA17_Chr8g0385321 52.101 119 57 0 35 153 14 132 1.28e-39 140
Msa0174020 MtrunA17_Chr5g0434571 52.174 115 55 0 29 143 44 158 2.13e-39 140
Msa0174020 MtrunA17_Chr8g0349261 39.779 181 94 2 28 193 8 188 2.31e-39 139
Msa0174020 MtrunA17_Chr1g0211161 53.153 111 52 0 33 143 13 123 2.51e-39 137
Msa0174020 MtrunA17_Chr1g0151941 37.234 188 103 2 29 215 8 181 4.68e-39 137
Msa0174020 MtrunA17_Chr4g0037141 58.824 102 42 0 35 136 14 115 5.11e-39 137
Msa0174020 MtrunA17_Chr1g0167691 55.769 104 46 0 33 136 12 115 6.12e-39 137
Msa0174020 MtrunA17_Chr6g0453471 53.043 115 54 0 29 143 8 122 7.28e-39 139
Msa0174020 MtrunA17_Chr7g0217221 43.871 155 77 2 29 173 8 162 9.06e-39 137
Msa0174020 MtrunA17_Chr3g0117091 53.153 111 52 0 33 143 12 122 1.11e-38 138
Msa0174020 MtrunA17_Chr4g0068061 55.085 118 50 1 29 146 8 122 1.19e-38 138
Msa0174020 MtrunA17_Chr7g0274581 49.550 111 56 0 29 139 8 118 1.19e-38 134
Msa0174020 MtrunA17_Chr7g0270891 54.955 111 50 0 33 143 12 122 1.78e-38 138
Msa0174020 MtrunA17_Chr4g0032401 53.571 112 52 0 33 144 17 128 1.88e-38 137
Msa0174020 MtrunA17_Chr2g0330041 53.846 104 48 0 33 136 12 115 2.81e-38 139
Msa0174020 MtrunA17_Chr4g0042671 51.695 118 57 0 33 150 12 129 2.91e-38 139
Msa0174020 MtrunA17_Chr1g0167661 45.833 144 71 2 33 176 12 148 3.35e-38 135
Msa0174020 MtrunA17_Chr7g0271241 54.310 116 53 0 33 148 12 127 3.35e-38 138
Msa0174020 MtrunA17_Chr4g0022881 52.727 110 52 0 29 138 8 117 3.39e-38 134
Msa0174020 MtrunA17_Chr8g0387421 56.075 107 47 0 33 139 12 118 3.91e-38 136
Msa0174020 MtrunA17_Chr3g0121241 57.692 104 44 0 33 136 42 145 4.31e-38 135
Msa0174020 MtrunA17_Chr4g0022901 56.190 105 46 0 33 137 13 117 5.96e-38 134
Msa0174020 MtrunA17_Chr2g0322521 56.604 106 46 0 33 138 29 134 6.80e-38 137
Msa0174020 MtrunA17_Chr4g0022931 48.529 136 61 1 33 159 13 148 7.22e-38 134
Msa0174020 MtrunA17_Chr7g0228891 53.043 115 54 0 29 143 8 122 7.29e-38 134
Msa0174020 MtrunA17_Chr4g0022911 56.190 105 46 0 33 137 13 117 8.53e-38 134
Msa0174020 MtrunA17_Chr1g0203441 53.043 115 53 1 34 147 14 128 8.92e-38 134
Msa0174020 MtrunA17_Chr3g0092401 53.704 108 50 0 33 140 13 120 9.31e-38 135
Msa0174020 MtrunA17_Chr8g0342541 52.885 104 49 0 33 136 12 115 1.33e-37 135
Msa0174020 MtrunA17_Chr2g0309911 52.885 104 49 0 33 136 11 114 1.79e-37 134
Msa0174020 MtrunA17_Chr8g0342521 53.846 104 48 0 33 136 12 115 2.60e-37 135
Msa0174020 MtrunA17_Chr4g0060721 54.630 108 49 0 29 136 9 116 2.73e-37 134
Msa0174020 MtrunA17_Chr6g0453211 57.282 103 44 0 29 131 8 110 2.81e-37 134
Msa0174020 MtrunA17_Chr1g0193801 38.286 175 93 1 33 192 12 186 3.63e-37 135
Msa0174020 MtrunA17_Chr4g0022891 48.000 125 58 1 29 153 8 125 5.02e-37 131
Msa0174020 MtrunA17_Chr7g0254411 51.327 113 55 0 33 145 12 124 5.94e-37 134
Msa0174020 MtrunA17_Chr5g0397231 57.576 99 42 0 33 131 12 110 1.13e-36 133
Msa0174020 MtrunA17_Chr4g0028311 39.683 189 93 5 29 203 8 189 2.21e-36 132
Msa0174020 MtrunA17_Chr6g0470971 55.340 103 46 0 34 136 15 117 2.38e-36 130
Msa0174020 MtrunA17_Chr3g0088461 53.774 106 49 0 33 138 22 127 3.07e-36 132
Msa0174020 MtrunA17_Chr4g0058631 53.211 109 47 1 33 137 12 120 4.89e-36 132
Msa0174020 MtrunA17_Chr1g0194951 54.808 104 47 0 33 136 12 115 5.65e-36 132
Msa0174020 MtrunA17_Chr4g0044421 49.558 113 57 0 35 147 14 126 6.87e-36 127
Msa0174020 MtrunA17_Chr6g0452271 49.565 115 58 0 29 143 8 122 9.89e-36 130
Msa0174020 MtrunA17_Chr2g0327351 56.731 104 44 1 29 131 8 111 1.38e-35 129
Msa0174020 MtrunA17_Chr1g0152011 55.046 109 48 1 29 136 8 116 1.77e-35 130
Msa0174020 MtrunA17_Chr2g0323351 53.398 103 48 0 33 135 12 114 2.87e-35 127
Msa0174020 MtrunA17_Chr3g0135311 55.046 109 48 1 29 136 8 116 3.61e-35 129
Msa0174020 MtrunA17_Chr3g0103281 50.450 111 55 0 33 143 12 122 3.97e-35 128
Msa0174020 MtrunA17_Chr5g0400821 54.128 109 49 1 29 136 8 116 8.75e-35 127
Msa0174020 MtrunA17_Chr1g0192411 47.009 117 62 0 22 138 1 117 1.47e-34 129
Msa0174020 MtrunA17_Chr2g0311221 51.923 104 50 0 29 132 10 113 2.01e-34 127
Msa0174020 MtrunA17_Chr8g0342481 51.429 105 50 1 33 136 12 116 2.02e-34 128
Msa0174020 MtrunA17_Chr7g0240821 47.059 119 63 0 38 156 6 124 1.37e-33 122
Msa0174020 MtrunA17_Chr4g0072751 55.769 104 45 1 29 131 8 111 1.50e-33 125
Msa0174020 MtrunA17_Chr8g0334881 46.087 115 61 1 27 140 4 118 1.54e-33 124
Msa0174020 MtrunA17_Chr7g0269831 53.211 109 51 0 33 141 12 120 3.73e-33 124
Msa0174020 MtrunA17_Chr4g0054391 54.902 102 45 1 29 129 8 109 4.19e-33 122
Msa0174020 MtrunA17_Chr7g0264641 46.032 126 67 1 29 153 8 133 5.69e-33 121
Msa0174020 MtrunA17_Chr5g0417821 46.552 116 62 0 33 148 7 122 1.31e-32 121
Msa0174020 MtrunA17_Chr8g0360111 51.818 110 53 0 25 134 17 126 2.69e-32 119
Msa0174020 MtrunA17_Chr6g0487491 49.573 117 50 2 29 136 8 124 2.87e-32 119
Msa0174020 MtrunA17_Chr5g0440781 48.544 103 52 1 34 135 13 115 9.00e-32 116
Msa0174020 MtrunA17_Chr5g0441131 42.424 132 70 3 25 155 1 127 1.95e-31 115
Msa0174020 MtrunA17_Chr7g0220341 47.826 115 58 1 25 137 17 131 2.17e-31 117
Msa0174020 MtrunA17_Chr5g0440761 48.544 103 52 1 34 135 13 115 2.74e-31 117
Msa0174020 MtrunA17_Chr5g0441141 48.544 103 52 1 34 135 13 115 3.44e-31 117
Msa0174020 MtrunA17_Chr5g0434931 48.214 112 58 0 25 136 27 138 1.96e-30 115
Msa0174020 MtrunA17_Chr4g0013361 46.729 107 56 1 33 138 10 116 2.70e-30 115
Msa0174020 MtrunA17_Chr5g0434911 46.218 119 64 0 18 136 6 124 3.91e-30 114
Msa0174020 MtrunA17_Chr3g0099141 52.326 86 41 0 29 114 36 121 4.24e-30 110
Msa0174020 MtrunA17_Chr5g0434831 48.182 110 57 0 28 137 2 111 7.20e-30 111
Msa0174020 MtrunA17_Chr5g0434841 45.833 120 64 1 18 137 6 124 2.72e-29 113
Msa0174020 MtrunA17_Chr7g0247131 55.952 84 37 0 65 148 10 93 7.15e-29 110
Msa0174020 MtrunA17_Chr7g0228991 44.186 129 71 1 10 137 5 133 8.80e-29 110
Msa0174020 MtrunA17_Chr8g0342511 53.947 76 35 0 33 108 12 87 3.98e-25 96.3
Msa0174020 MtrunA17_Chr4g0042611 53.247 77 36 0 33 109 12 88 6.05e-25 95.5
Msa0174020 MtrunA17_Chr6g0454921 42.241 116 66 1 35 150 15 129 8.27e-25 98.6
Msa0174020 MtrunA17_Chr2g0323321 51.765 85 41 0 29 113 7 91 8.42e-25 95.9
Msa0174020 MtrunA17_Chr3g0133601 46.602 103 54 1 35 137 37 138 9.22e-25 99.0
Msa0174020 MtrunA17_Chr4g0008551 47.115 104 52 2 35 137 38 139 1.60e-24 100
Msa0174020 MtrunA17_Chr8g0342531 51.282 78 38 0 33 110 12 89 1.89e-24 96.3
Msa0174020 MtrunA17_Chr7g0238631 44.118 102 56 1 35 136 113 213 4.90e-24 101
Msa0174020 MtrunA17_Chr5g0401731 43.119 109 61 1 35 143 15 122 6.10e-24 99.0
Msa0174020 MtrunA17_Chr5g0395221 50.649 77 38 0 33 109 12 88 6.73e-24 92.4
Msa0174020 MtrunA17_Chr6g0460661 38.739 111 65 2 35 144 16 124 1.23e-23 94.4
Msa0174020 MtrunA17_Chr5g0429661 33.750 160 101 3 27 183 114 271 1.37e-23 98.2
Msa0174020 MtrunA17_Chr2g0294811 53.247 77 36 0 33 109 12 88 2.20e-23 92.4
Msa0174020 MtrunA17_Chr5g0425591 43.011 93 52 1 25 116 1 93 4.39e-23 90.5
Msa0174020 MtrunA17_Chr8g0342461 48.101 79 40 1 33 110 12 90 6.16e-23 91.7
Msa0174020 MtrunA17_Chr8g0342471 48.101 79 40 1 33 110 12 90 1.58e-22 90.5
Msa0174020 MtrunA17_Chr7g0238651 40.909 110 63 1 38 145 10 119 2.65e-22 94.7
Msa0174020 MtrunA17_Chr4g0058991 38.931 131 75 3 32 161 206 332 8.34e-22 94.4
Msa0174020 MtrunA17_Chr3g0139671 40.777 103 58 2 35 136 85 185 1.14e-21 94.7
Msa0174020 MtrunA17_Chr4g0053431 42.157 102 58 1 35 136 5 105 1.42e-21 91.3
Msa0174020 MtrunA17_Chr5g0417621 40.566 106 60 2 35 139 134 237 2.62e-21 92.8
Msa0174020 MtrunA17_Chr1g0157731 39.216 102 61 1 35 136 91 191 4.75e-21 92.8
Msa0174020 MtrunA17_Chr3g0125801 40.870 115 65 2 26 139 7 119 6.47e-21 90.1
Msa0174020 MtrunA17_Chr4g0042501 39.623 106 61 2 35 139 105 208 7.14e-21 91.7
Msa0174020 MtrunA17_Chr6g0480581 40.566 106 60 2 35 139 4 107 1.34e-20 88.2
Msa0174020 MtrunA17_Chr3g0117511 39.815 108 62 2 35 141 183 288 4.85e-20 89.4
Msa0174020 MtrunA17_Chr7g0229101 57.971 69 29 0 65 133 4 72 5.14e-20 85.9
Msa0174020 MtrunA17_Chr3g0093811 50.633 79 39 0 65 143 14 92 7.63e-20 86.7
Msa0174020 MtrunA17_Chr6g0453751 43.011 93 44 2 33 116 20 112 1.16e-19 82.8
Msa0174020 MtrunA17_Chr7g0254261 33.333 156 96 5 35 187 89 239 1.61e-19 87.0
Msa0174020 MtrunA17_Chr5g0434901 61.538 65 25 0 67 131 7 71 2.60e-19 81.3
Msa0174020 MtrunA17_Chr6g0460671 35.537 121 75 2 29 148 93 211 6.22e-19 85.5
Msa0174020 MtrunA17_Chr5g0437321 45.263 95 51 1 35 129 19 112 6.84e-19 84.3
Msa0174020 MtrunA17_Chr7g0228531 37.879 132 78 3 27 158 212 339 8.56e-19 85.5
Msa0174020 MtrunA17_Chr7g0229131 38.333 120 69 2 65 184 4 118 2.01e-18 80.5
Msa0174020 MtrunA17_Chr5g0397841 42.105 95 54 1 35 129 110 203 7.45e-18 83.2
Msa0174020 MtrunA17_Chr5g0416341 38.235 102 60 2 38 138 29 128 2.39e-17 81.6
Msa0174020 MtrunA17_Chr8g0362231 38.261 115 65 3 38 151 25 134 9.43e-17 79.7
Msa0174020 MtrunA17_Chr7g0228401 38.372 86 52 1 46 131 290 374 2.14e-15 75.9
Msa0174020 MtrunA17_Chr1g0177901 37.931 87 53 1 45 131 4 89 2.49e-15 73.2
Msa0174020 MtrunA17_Chr1g0193901 45.238 84 44 2 33 114 11 94 6.63e-15 69.3
Msa0174020 MtrunA17_Chr1g0193891 45.238 84 44 2 33 114 11 94 6.63e-15 69.3
Msa0174020 MtrunA17_Chr1g0193871 45.238 84 44 2 33 114 11 94 6.63e-15 69.3
Msa0174020 MtrunA17_Chr1g0193881 45.238 84 44 2 33 114 11 94 6.63e-15 69.3
Msa0174020 MtrunA17_Chr7g0228481 33.333 132 84 3 27 158 212 339 4.30e-14 71.6
Msa0174020 MtrunA17_Chr7g0233061 34.906 106 48 2 35 131 180 273 5.72e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174020 AT2G47190.1 48.679 265 112 5 26 277 13 266 1.35e-80 244
Msa0174020 AT3G06490.1 74.324 148 38 0 19 166 5 152 3.18e-75 233
Msa0174020 AT1G48000.1 67.347 147 47 1 33 178 32 178 6.34e-73 224
Msa0174020 AT5G49620.1 74.468 141 36 0 28 168 21 161 1.75e-71 222
Msa0174020 AT1G68320.1 66.901 142 47 0 33 174 19 160 9.10e-70 217
Msa0174020 AT5G49620.2 67.742 155 36 1 28 168 21 175 7.97e-68 213
Msa0174020 AT1G25340.1 52.020 198 64 4 34 231 19 185 7.41e-65 204
Msa0174020 AT1G25340.2 50.000 198 63 5 34 231 19 180 2.74e-59 190
Msa0174020 AT1G25340.3 50.000 198 63 5 34 231 19 180 4.76e-59 191
Msa0174020 AT3G27810.1 72.897 107 29 0 33 139 20 126 1.59e-57 184
Msa0174020 AT3G01530.1 57.534 146 52 2 11 147 4 148 4.75e-55 177
Msa0174020 AT5G40350.1 72.816 103 28 0 33 135 17 119 4.84e-55 177
Msa0174020 AT3G24310.1 66.667 105 35 0 34 138 19 123 2.55e-49 164
Msa0174020 AT4G13480.1 66.355 107 36 0 32 138 5 111 4.20e-49 163
Msa0174020 AT5G59780.3 63.889 108 39 0 34 141 9 116 2.87e-48 160
Msa0174020 AT3G46130.1 61.607 112 43 0 34 145 10 121 4.58e-48 160
Msa0174020 AT3G30210.1 64.762 105 37 0 34 138 28 132 5.50e-47 158
Msa0174020 AT5G14750.1 60.000 115 46 0 22 136 5 119 3.98e-45 151
Msa0174020 AT5G40330.1 43.137 204 86 4 34 229 13 194 2.11e-44 150
Msa0174020 AT2G32460.1 54.098 122 56 0 17 138 2 123 4.06e-43 153
Msa0174020 AT5G16770.4 52.273 132 61 2 33 162 12 143 2.24e-42 148
Msa0174020 AT5G16770.3 52.273 132 61 2 33 162 12 143 2.24e-42 148
Msa0174020 AT2G32460.2 59.434 106 43 0 33 138 6 111 2.88e-42 151
Msa0174020 AT5G16770.1 52.273 132 61 2 33 162 12 143 3.28e-42 147
Msa0174020 AT5G16770.2 52.273 132 61 2 33 162 12 143 3.28e-42 147
Msa0174020 AT3G02940.2 53.279 122 57 0 29 150 8 129 4.76e-42 147
Msa0174020 AT3G02940.1 53.279 122 57 0 29 150 8 129 6.86e-42 146
Msa0174020 AT3G02940.3 53.279 122 57 0 29 150 8 129 6.86e-42 146
Msa0174020 AT3G11440.2 56.075 107 47 0 32 138 40 146 7.22e-42 150
Msa0174020 AT3G27920.1 63.107 103 38 0 34 136 15 117 7.29e-42 144
Msa0174020 AT5G52600.1 57.658 111 47 0 27 137 6 116 1.32e-41 142
Msa0174020 AT5G54230.1 55.856 111 49 0 33 143 12 122 1.33e-41 145
Msa0174020 AT4G12350.1 44.737 152 72 2 29 175 8 152 1.36e-41 145
Msa0174020 AT1G06180.1 52.500 120 57 0 33 152 12 131 1.99e-41 143
Msa0174020 AT1G22640.1 54.701 117 53 0 33 149 12 128 2.63e-41 143
Msa0174020 AT4G21440.1 43.558 163 81 2 33 186 12 172 3.20e-41 145
Msa0174020 AT2G31180.1 56.481 108 47 0 29 136 8 115 3.71e-41 142
Msa0174020 AT4G05100.1 54.054 111 51 0 33 143 13 123 3.76e-41 144
Msa0174020 AT3G11440.3 56.075 107 47 0 32 138 40 146 3.81e-41 149
Msa0174020 AT3G11440.4 56.075 107 47 0 32 138 40 146 3.81e-41 149
Msa0174020 AT3G11440.1 56.075 107 47 0 32 138 40 146 3.81e-41 149
Msa0174020 AT5G55020.1 54.701 117 53 0 23 139 16 132 6.23e-41 148
Msa0174020 AT4G26930.1 53.719 121 56 0 19 139 5 125 6.70e-41 145
Msa0174020 AT4G34990.1 61.765 102 39 0 35 136 14 115 6.72e-41 142
Msa0174020 AT5G06100.1 54.545 110 50 0 29 138 28 137 6.96e-41 147
Msa0174020 AT1G66230.1 54.783 115 52 0 29 143 8 122 7.00e-41 143
Msa0174020 AT5G65230.1 50.820 122 60 0 29 150 8 129 7.13e-41 144
Msa0174020 AT5G10280.1 52.459 122 58 0 29 150 8 129 8.26e-41 144
Msa0174020 AT5G15310.1 50.394 127 63 0 29 155 8 134 1.87e-40 143
Msa0174020 AT5G15310.4 54.783 115 52 0 29 143 8 122 1.90e-40 140
Msa0174020 AT5G15310.2 50.394 127 63 0 29 155 8 134 2.06e-40 142
Msa0174020 AT4G28110.1 55.769 104 46 0 33 136 12 115 2.54e-40 141
Msa0174020 AT5G06100.5 54.545 110 50 0 29 138 28 137 3.05e-40 146
Msa0174020 AT5G06100.2 54.545 110 50 0 29 138 28 137 3.05e-40 146
Msa0174020 AT5G06100.3 54.545 110 50 0 29 138 28 137 3.05e-40 146
Msa0174020 AT5G06100.4 54.545 110 50 0 29 138 28 137 3.05e-40 146
Msa0174020 AT3G13540.1 53.279 122 57 0 31 152 21 142 5.19e-40 139
Msa0174020 AT3G01140.2 51.220 123 60 0 29 151 8 130 5.69e-40 142
Msa0174020 AT3G47600.1 53.846 117 52 1 29 143 8 124 6.62e-40 142
Msa0174020 AT1G34670.1 45.638 149 80 1 33 181 12 159 7.46e-40 142
Msa0174020 AT3G53200.1 53.982 113 50 1 24 136 2 112 8.29e-40 139
Msa0174020 AT4G22680.1 50.000 120 60 0 29 148 8 127 9.45e-40 139
Msa0174020 AT3G01140.1 51.220 123 60 0 29 151 51 173 1.45e-39 142
Msa0174020 AT3G23250.1 37.374 198 102 2 29 226 8 183 2.10e-39 139
Msa0174020 AT5G26660.1 45.139 144 79 0 33 176 12 155 3.38e-39 140
Msa0174020 AT2G26960.1 51.261 119 57 1 33 151 20 137 3.41e-39 142
Msa0174020 AT3G61250.1 49.167 120 61 0 29 148 8 127 4.54e-39 139
Msa0174020 AT2G16720.1 58.654 104 43 0 33 136 12 115 4.67e-39 137
Msa0174020 AT3G27810.2 77.027 74 17 0 66 139 4 77 4.76e-39 135
Msa0174020 AT4G38620.1 58.824 102 42 0 35 136 14 115 5.78e-39 138
Msa0174020 AT1G79180.1 54.054 111 51 0 29 139 10 120 6.71e-39 138
Msa0174020 AT2G47460.1 38.462 208 112 4 33 230 12 213 7.08e-39 140
Msa0174020 AT3G13890.2 54.808 104 47 0 33 136 12 115 9.04e-39 139
Msa0174020 AT1G57560.2 54.054 111 51 0 33 143 12 122 9.51e-39 137
Msa0174020 AT1G57560.1 54.054 111 51 0 33 143 12 122 1.01e-38 138
Msa0174020 AT4G17785.2 52.542 118 56 0 33 150 13 130 1.25e-38 139
Msa0174020 AT4G17785.1 52.542 118 56 0 33 150 13 130 1.30e-38 139
Msa0174020 AT5G16600.1 52.174 115 55 0 29 143 8 122 1.58e-38 138
Msa0174020 AT1G09540.1 50.862 116 57 0 33 148 12 127 1.63e-38 139
Msa0174020 AT1G35515.1 56.731 104 45 0 33 136 12 115 1.86e-38 134
Msa0174020 AT4G37780.1 56.881 109 46 1 29 136 8 116 3.12e-38 136
Msa0174020 AT5G12870.1 54.630 108 49 0 33 140 18 125 3.57e-38 135
Msa0174020 AT1G08810.1 52.101 119 57 0 29 147 8 126 4.41e-38 135
Msa0174020 AT5G62470.2 54.630 108 49 0 33 140 12 119 6.61e-38 137
Msa0174020 AT5G35550.1 48.889 135 58 3 21 147 5 136 7.59e-38 134
Msa0174020 AT1G16490.1 51.852 108 52 0 29 136 10 117 1.21e-37 134
Msa0174020 AT4G09460.1 57.843 102 43 0 35 136 14 115 1.41e-37 133
Msa0174020 AT1G74650.1 55.046 109 49 0 33 141 12 120 1.45e-37 135
Msa0174020 AT5G14340.1 50.833 120 59 0 29 148 20 139 1.57e-37 134
Msa0174020 AT5G60890.1 52.679 112 53 0 33 144 12 123 2.44e-37 134
Msa0174020 AT3G62610.1 57.692 104 44 0 33 136 12 115 3.35e-37 135
Msa0174020 AT5G40350.2 78.571 70 15 0 66 135 5 74 5.36e-37 129
Msa0174020 AT5G07690.1 54.369 103 47 0 33 135 12 114 5.68e-37 134
Msa0174020 AT1G63910.1 54.206 107 49 0 33 139 12 118 5.94e-37 135
Msa0174020 AT1G18570.1 55.660 106 47 0 31 136 11 116 5.98e-37 134
Msa0174020 AT5G62320.1 47.692 130 61 1 29 151 9 138 8.31e-37 131
Msa0174020 AT3G12720.1 50.962 104 51 0 33 136 22 125 1.01e-36 132
Msa0174020 AT3G28910.1 50.420 119 59 0 29 147 8 126 1.04e-36 133
Msa0174020 AT4G01680.3 54.717 106 48 0 33 138 12 117 2.13e-36 130
Msa0174020 AT5G49330.1 54.630 108 49 0 29 136 8 115 2.46e-36 132
Msa0174020 AT5G07700.1 52.885 104 49 0 33 136 12 115 2.71e-36 132
Msa0174020 AT5G07700.2 52.885 104 49 0 33 136 12 115 2.71e-36 132
Msa0174020 AT5G61420.2 51.351 111 54 0 33 143 12 122 2.81e-36 133
Msa0174020 AT1G56160.1 51.852 108 52 0 29 136 10 117 4.02e-36 130
Msa0174020 AT4G01680.1 54.717 106 48 0 33 138 12 117 5.20e-36 131
Msa0174020 AT5G62470.1 54.630 108 48 1 33 140 12 118 5.99e-36 132
Msa0174020 AT3G13890.1 50.442 113 47 1 33 136 12 124 8.04e-36 132
Msa0174020 AT3G28470.1 53.398 103 48 0 29 131 8 110 1.45e-35 130
Msa0174020 AT3G08500.1 53.774 106 49 0 33 138 30 135 1.57e-35 130
Msa0174020 AT3G12820.1 50.926 108 53 0 29 136 10 117 3.89e-35 127
Msa0174020 AT5G57620.1 50.833 120 58 1 29 147 8 127 5.12e-35 129
Msa0174020 AT1G74080.1 54.369 103 47 0 33 135 12 114 6.12e-35 129
Msa0174020 AT5G56110.1 50.450 111 55 0 33 143 12 122 1.85e-34 127
Msa0174020 AT3G49690.1 54.128 109 49 1 29 136 8 116 1.96e-34 127
Msa0174020 AT5G23000.1 51.376 109 52 1 29 136 8 116 2.07e-34 127
Msa0174020 AT1G74430.1 48.276 116 60 0 33 148 12 127 2.49e-34 125
Msa0174020 AT3G46130.3 66.667 81 27 0 65 145 9 89 6.54e-34 123
Msa0174020 AT5G65790.1 53.211 109 50 1 29 136 8 116 8.31e-34 126
Msa0174020 AT5G52260.1 50.000 116 54 1 34 145 13 128 2.37e-33 123
Msa0174020 AT3G48920.1 51.961 102 49 0 34 135 19 120 2.70e-33 122
Msa0174020 AT3G46130.4 66.250 80 27 0 66 145 20 99 2.97e-33 122
Msa0174020 AT5G59780.2 68.421 76 24 0 66 141 20 95 3.39e-33 121
Msa0174020 AT2G36890.1 51.376 109 52 1 29 136 8 116 1.25e-32 122
Msa0174020 AT4G01680.2 49.153 118 48 1 33 138 12 129 1.28e-32 122
Msa0174020 AT4G25560.1 51.456 103 50 0 34 136 11 113 1.56e-32 121
Msa0174020 AT3G60460.1 49.541 109 54 1 33 140 11 119 1.96e-32 121
Msa0174020 AT1G79180.2 41.667 144 51 1 29 139 10 153 2.31e-32 122
Msa0174020 AT2G36890.2 51.376 109 52 1 29 136 49 157 2.37e-32 122
Msa0174020 AT1G66370.1 49.091 110 56 0 33 142 8 117 6.10e-31 116
Msa0174020 AT1G18710.1 50.962 104 51 0 33 136 12 115 6.46e-31 116
Msa0174020 AT3G53200.2 64.789 71 25 0 66 136 9 79 7.09e-29 109
Msa0174020 AT2G26950.1 44.231 104 58 0 32 135 15 118 2.04e-28 112
Msa0174020 AT1G66380.1 50.962 104 51 0 33 136 8 111 3.98e-28 105
Msa0174020 AT1G56650.1 38.953 172 94 4 33 204 8 168 8.84e-28 107
Msa0174020 AT1G66390.1 50.962 104 51 0 33 136 8 111 9.38e-27 105
Msa0174020 AT5G26660.2 45.045 111 61 0 66 176 14 124 1.45e-26 106
Msa0174020 AT5G35550.2 54.737 95 35 2 61 147 45 139 3.41e-26 103
Msa0174020 AT5G14750.3 64.706 68 24 0 69 136 18 85 5.92e-26 100
Msa0174020 AT4G37260.1 34.409 186 112 3 35 216 13 192 3.05e-25 102
Msa0174020 AT3G12820.2 61.765 68 26 0 69 136 2 69 2.05e-24 97.4
Msa0174020 AT3G47600.2 55.000 80 34 1 66 143 39 118 3.39e-24 100
Msa0174020 AT3G27785.1 37.405 131 74 2 33 156 187 316 6.21e-24 100
Msa0174020 AT1G69560.1 36.735 147 83 4 12 153 80 221 1.45e-23 98.2
Msa0174020 AT5G02320.1 43.137 102 57 1 35 136 127 227 1.47e-23 100
Msa0174020 AT5G02320.2 43.137 102 57 1 35 136 127 227 1.47e-23 100
Msa0174020 AT1G69560.2 36.842 133 77 3 12 139 96 226 2.11e-23 98.2
Msa0174020 AT5G02320.3 43.137 102 57 1 35 136 67 167 2.14e-23 99.4
Msa0174020 AT3G29020.1 41.593 113 65 1 27 139 57 168 3.16e-23 95.5
Msa0174020 AT2G23290.1 45.098 102 55 1 35 136 13 113 6.63e-23 96.3
Msa0174020 AT3G29020.2 41.593 113 65 1 27 139 59 170 9.28e-23 95.5
Msa0174020 AT3G09230.1 50.526 95 46 1 35 129 55 148 1.25e-22 96.7
Msa0174020 AT3G09370.2 42.718 103 58 1 35 137 135 236 1.39e-22 97.4
Msa0174020 AT3G09370.1 42.718 103 58 1 35 137 130 231 1.41e-22 97.4
Msa0174020 AT3G09370.3 42.718 103 58 1 35 137 143 244 1.67e-22 97.1
Msa0174020 AT5G11510.3 41.176 102 59 1 35 136 81 181 2.07e-22 97.4
Msa0174020 AT5G11510.1 41.176 102 59 1 35 136 81 181 2.07e-22 97.4
Msa0174020 AT5G11510.4 41.176 102 59 1 35 136 81 181 2.07e-22 97.4
Msa0174020 AT5G11510.5 41.176 102 59 1 35 136 81 181 2.09e-22 97.1
Msa0174020 AT5G11510.2 41.176 102 59 1 35 136 81 181 2.20e-22 97.1
Msa0174020 AT4G18770.1 38.462 117 69 2 26 142 210 323 2.48e-22 95.9
Msa0174020 AT1G26780.1 39.450 109 63 2 32 139 95 201 6.42e-22 92.8
Msa0174020 AT1G17950.1 42.727 110 60 2 31 139 1 108 7.15e-22 92.0
Msa0174020 AT1G26780.2 39.450 109 63 2 32 139 95 201 9.26e-22 93.6
Msa0174020 AT5G40360.1 40.816 98 57 1 32 129 155 251 1.97e-21 92.8
Msa0174020 AT2G39880.1 42.453 106 58 2 35 139 50 153 2.16e-21 92.8
Msa0174020 AT1G73410.1 41.818 110 61 2 31 139 2 109 2.80e-21 90.5
Msa0174020 AT3G55730.1 42.991 107 58 2 35 140 56 160 3.08e-21 92.8
Msa0174020 AT1G73410.2 43.396 106 57 2 35 139 6 109 4.19e-21 89.0
Msa0174020 AT5G17800.1 38.739 111 67 1 29 139 87 196 7.03e-21 90.9
Msa0174020 AT5G11050.1 33.951 162 97 4 33 187 103 261 1.27e-20 91.3
Msa0174020 AT5G58850.1 39.815 108 62 2 35 141 105 210 1.91e-20 90.9
Msa0174020 AT4G32730.5 37.255 102 63 1 35 136 87 187 4.24e-20 90.5
Msa0174020 AT4G32730.4 37.255 102 63 1 35 136 87 187 4.24e-20 90.5
Msa0174020 AT4G32730.3 37.255 102 63 1 35 136 87 187 4.24e-20 90.5
Msa0174020 AT4G32730.2 37.255 102 63 1 35 136 87 187 4.24e-20 90.5
Msa0174020 AT4G32730.1 37.255 102 63 1 35 136 87 187 4.89e-20 90.1
Msa0174020 AT2G25230.1 42.424 99 56 1 33 131 24 121 6.39e-20 86.7
Msa0174020 AT4G33450.1 36.508 126 79 1 34 159 18 142 9.25e-20 86.3
Msa0174020 AT3G50060.1 43.158 95 53 1 35 129 6 99 1.05e-19 87.0
Msa0174020 AT5G67300.1 41.176 102 59 1 35 136 6 106 1.58e-19 86.7
Msa0174020 AT1G22640.3 53.521 71 33 0 79 149 1 71 1.92e-19 84.3
Msa0174020 AT2G37630.1 39.623 106 62 1 38 141 7 112 3.93e-19 86.3
Msa0174020 AT5G14750.4 60.345 58 23 0 79 136 1 58 7.46e-19 81.3
Msa0174020 AT5G14750.2 60.345 58 23 0 79 136 1 58 7.46e-19 81.3
Msa0174020 AT5G59780.1 66.667 51 17 0 91 141 1 51 2.32e-18 80.9
Msa0174020 AT3G46130.2 63.636 55 20 0 91 145 1 55 2.59e-18 81.3
Msa0174020 AT1G66380.3 57.746 71 30 0 66 136 8 78 3.37e-18 78.6
Msa0174020 AT3G23250.2 33.108 148 77 2 79 226 1 126 6.85e-18 80.9
Msa0174020 AT1G18960.1 33.945 109 69 2 35 143 10 115 5.60e-17 79.7
Msa0174020 AT5G40430.1 42.000 100 54 3 33 131 52 148 1.06e-16 78.2
Msa0174020 AT1G71030.2 44.872 78 43 0 72 149 5 82 1.37e-16 76.3
Msa0174020 AT1G71030.1 44.872 78 43 0 72 149 19 96 1.78e-16 76.3
Msa0174020 AT1G14350.2 34.677 124 72 4 38 158 28 145 2.07e-16 79.0
Msa0174020 AT1G14350.1 34.677 124 72 4 38 158 28 145 2.07e-16 79.0
Msa0174020 AT5G39700.1 32.450 151 91 5 4 146 20 167 2.60e-16 75.9
Msa0174020 AT1G66380.2 47.436 78 41 0 33 110 8 85 4.09e-16 73.2
Msa0174020 AT4G00540.2 34.188 117 73 2 33 146 101 216 1.24e-15 76.6
Msa0174020 AT4G00540.1 34.188 117 73 2 33 146 99 214 2.00e-15 76.3
Msa0174020 AT2G02820.1 34.375 128 71 3 38 157 33 155 3.40e-15 75.5
Msa0174020 AT2G02820.2 34.375 128 71 3 38 157 33 155 3.83e-15 75.5
Msa0174020 AT2G02820.3 34.375 128 71 3 38 157 33 155 4.15e-15 74.7
Msa0174020 AT4G25560.2 56.522 46 20 0 91 136 2 47 1.89e-11 62.8
Msa0174020 AT3G18100.4 30.216 139 90 2 19 151 369 506 5.20e-11 63.2
Msa0174020 AT3G18100.2 30.216 139 90 2 19 151 317 454 5.39e-11 63.2
Msa0174020 AT3G18100.3 30.216 139 90 2 19 151 482 619 5.40e-11 63.2
Msa0174020 AT3G18100.1 30.216 139 90 2 19 151 530 667 6.66e-11 63.2

Find 66 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGCTCTGTTCAAATTCT+TGG 0.113188 1_4:-59533869 None:intergenic
AAACGTATCTTACAATTTAA+TGG 0.137838 1_4:+59533791 Msa0174020:CDS
GAACTCCGTCGCTCGCTGTT+CGG 0.248764 1_4:+59533001 Msa0174020:CDS
ACTCCTCATTACATGAATAT+TGG 0.255386 1_4:-59532847 None:intergenic
CAAGTTTCACTATGAGCTTT+AGG 0.275605 1_4:-59533690 None:intergenic
TTTAATGGATTGTGCGGAAC+TGG 0.299412 1_4:+59533806 Msa0174020:CDS
GGGACACATTGCGTTTAGTA+TGG 0.307542 1_4:+59533577 Msa0174020:CDS
AACTCCGTCGCTCGCTGTTC+GGG 0.308012 1_4:+59533002 Msa0174020:CDS
CAAGAATCAAGACTTGTTCT+TGG 0.312108 1_4:-59533106 None:intergenic
ATGTAAACAGTCAACAGTTT+AGG 0.327525 1_4:+59533556 Msa0174020:CDS
TAAAATAGCTGAACAATTAC+CGG 0.344452 1_4:+59533461 Msa0174020:CDS
ATGAGCTTTAGGATTGTTGC+AGG 0.344463 1_4:-59533679 None:intergenic
ATTTCATTGTCCGTTCTTCC+CGG 0.357071 1_4:-59533480 None:intergenic
CTACAGTTGCACGAGATGTT+TGG 0.358142 1_4:-59533623 None:intergenic
TGTGGACAGATGAAAATATA+TGG 0.370670 1_4:+59533910 Msa0174020:CDS
ATGTTCCCTCGACGAACATT+TGG 0.371902 1_4:-59533077 None:intergenic
TTCATTCCCGTTGGGGCAAT+CGG 0.393266 1_4:+59533132 Msa0174020:CDS
GAGGTTTCATCGTACTCGTC+AGG 0.403448 1_4:+59533747 Msa0174020:CDS
ACAATGAAATAAAGAACTAT+TGG 0.404212 1_4:+59533493 Msa0174020:CDS
TTCTTGATCTTCATTCCCGT+TGG 0.406689 1_4:+59533123 Msa0174020:CDS
TGTAAGTCAAGAAGATACTA+TGG 0.408576 1_4:+59532899 Msa0174020:CDS
GGAACTGGGATCCACGTTGC+AGG 0.410029 1_4:+59533821 Msa0174020:CDS
GGTGATTTGTCCGTGGCTAT+AGG 0.410879 1_4:-59533655 None:intergenic
CACGTACCGATTGCCCCAAC+GGG 0.411030 1_4:-59533138 None:intergenic
TCTTGATCTTCATTCCCGTT+GGG 0.419228 1_4:+59533124 Msa0174020:CDS
TGTAAACAGTCAACAGTTTA+GGG 0.435530 1_4:+59533557 Msa0174020:CDS
CAAGAGTGGTGAAGCAAGCT+AGG 0.457237 1_4:+59533520 Msa0174020:CDS
TGTTCGGGTCTAAAGAGAAC+CGG 0.457348 1_4:+59533017 Msa0174020:CDS
CAGTCCACGGAGATGGTCAC+TGG 0.481786 1_4:+59532979 Msa0174020:CDS
CTTGATCTTCATTCCCGTTG+GGG 0.504304 1_4:+59533125 Msa0174020:CDS
AGGTTTCATCGTACTCGTCA+GGG 0.509587 1_4:+59533748 Msa0174020:CDS
GATACTATGGTGATAAAGAA+AGG 0.514524 1_4:+59532912 Msa0174020:CDS
ACACGTACCGATTGCCCCAA+CGG 0.518769 1_4:-59533139 None:intergenic
TCCTCCCATGTTGCAGTCAG+AGG 0.529236 1_4:+59533728 Msa0174020:CDS
GTATCCTCCTCTTCTGTCCA+TGG 0.531773 1_4:-59532936 None:intergenic
GAAACCTCTGACTGCAACAT+GGG 0.535668 1_4:-59533732 None:intergenic
TGGGATCCACGTTGCAGGAG+TGG 0.536111 1_4:+59533826 Msa0174020:CDS
AAGCTCATAGTGAAACTTGT+GGG 0.537240 1_4:+59533694 Msa0174020:CDS
AAACCAATATTCATGTAATG+AGG 0.554808 1_4:+59532844 Msa0174020:CDS
TGAAACCTCTGACTGCAACA+TGG 0.560706 1_4:-59533733 None:intergenic
TTAATGGATTGTGCGGAACT+GGG 0.572101 1_4:+59533807 Msa0174020:CDS
GGAAAAGCTGCAGATTAAGA+TGG 0.575213 1_4:+59533039 Msa0174020:CDS
ATGAACTATGTGGCAGTCCA+CGG 0.575770 1_4:+59532966 Msa0174020:CDS
TTACAATTTAATGGATTGTG+CGG 0.586971 1_4:+59533800 Msa0174020:CDS
AAAATAGCTGAACAATTACC+GGG 0.587045 1_4:+59533462 Msa0174020:CDS
TATGTGGCAGTCCACGGAGA+TGG 0.598972 1_4:+59532972 Msa0174020:CDS
AGGTCCATGGACAGAAGAGG+AGG 0.600682 1_4:+59532932 Msa0174020:CDS
TGGTGATAAAGAAAGGTCCA+TGG 0.601432 1_4:+59532919 Msa0174020:CDS
TGAACAATTACCGGGAAGAA+CGG 0.602159 1_4:+59533470 Msa0174020:CDS
ACCTCTGACTGCAACATGGG+AGG 0.606494 1_4:-59533729 None:intergenic
TGGATTCTCTCGATGAGACG+TGG 0.612233 1_4:-59533603 None:intergenic
GTTCGGGTCTAAAGAGAACC+GGG 0.612268 1_4:+59533018 Msa0174020:CDS
TACGTCCAAATGTTCGTCGA+GGG 0.619358 1_4:+59533072 Msa0174020:CDS
GAAAGGTCCATGGACAGAAG+AGG 0.623514 1_4:+59532929 Msa0174020:CDS
GGTTTCATCGTACTCGTCAG+GGG 0.629943 1_4:+59533749 Msa0174020:CDS
AGCTTTAGGATTGTTGCAGG+TGG 0.632473 1_4:-59533676 None:intergenic
GATACTAATTCCTATAGCCA+CGG 0.634352 1_4:+59533645 Msa0174020:CDS
GAACTATTGGAGAACAAGAG+TGG 0.634570 1_4:+59533506 Msa0174020:CDS
TGCAGGTGGTGATTTGTCCG+TGG 0.642924 1_4:-59533662 None:intergenic
AAAGCTCATAGTGAAACTTG+TGG 0.646540 1_4:+59533693 Msa0174020:CDS
AGCTCATAGTGAAACTTGTG+GGG 0.647510 1_4:+59533695 Msa0174020:CDS
TAGACCCGAACAGCGAGCGA+CGG 0.654403 1_4:-59533006 None:intergenic
TACTATTCTGATGAACTATG+TGG 0.655766 1_4:+59532956 Msa0174020:CDS
TTACGTCCAAATGTTCGTCG+AGG 0.668070 1_4:+59533071 Msa0174020:CDS
GCAGTTCCACTCCTGCAACG+TGG 0.712558 1_4:-59533832 None:intergenic
AGTTCCAGTGACCATCTCCG+TGG 0.715119 1_4:-59532983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGGTTAATTTATATATTA+AGG + chr1_4:59533186-59533205 Msa0174020:intron 10.0%
!! ATTGGTTAATTTATATATTA+AGG + chr1_4:59533186-59533205 Msa0174020:intron 10.0%
!!! TTTTTTTTTTAGAGAAAACA+AGG - chr1_4:59533365-59533384 None:intergenic 15.0%
!!! TTTTTTTTTTAGAGAAAACA+AGG - chr1_4:59533365-59533384 None:intergenic 15.0%
!!! GATATTCTGTTATTTAATGA+AGG + chr1_4:59533433-59533452 Msa0174020:intron 20.0%
!! ACAATGAAATAAAGAACTAT+TGG + chr1_4:59533493-59533512 Msa0174020:CDS 20.0%
!! AAACGTATCTTACAATTTAA+TGG + chr1_4:59533791-59533810 Msa0174020:CDS 20.0%
!!! GATATTCTGTTATTTAATGA+AGG + chr1_4:59533433-59533452 Msa0174020:intron 20.0%
!! ACAATGAAATAAAGAACTAT+TGG + chr1_4:59533493-59533512 Msa0174020:CDS 20.0%
!! AAACGTATCTTACAATTTAA+TGG + chr1_4:59533791-59533810 Msa0174020:CDS 20.0%
! AAACCAATATTCATGTAATG+AGG + chr1_4:59532844-59532863 Msa0174020:CDS 25.0%
! ATGCATGTAAACTATGTAAT+TGG + chr1_4:59533168-59533187 Msa0174020:intron 25.0%
!!! AAACCTTGTTTAGTTTTAGA+AGG + chr1_4:59533382-59533401 Msa0174020:intron 25.0%
!!! TTTCCTTCTAAAACTAAACA+AGG - chr1_4:59533388-59533407 None:intergenic 25.0%
!! ATTCTGTTATTTAATGAAGG+TGG + chr1_4:59533436-59533455 Msa0174020:intron 25.0%
! TAAAATAGCTGAACAATTAC+CGG + chr1_4:59533461-59533480 Msa0174020:CDS 25.0%
!!! TTACAATTTAATGGATTGTG+CGG + chr1_4:59533800-59533819 Msa0174020:CDS 25.0%
! AAACCAATATTCATGTAATG+AGG + chr1_4:59532844-59532863 Msa0174020:CDS 25.0%
! ATGCATGTAAACTATGTAAT+TGG + chr1_4:59533168-59533187 Msa0174020:intron 25.0%
!!! AAACCTTGTTTAGTTTTAGA+AGG + chr1_4:59533382-59533401 Msa0174020:intron 25.0%
!!! TTTCCTTCTAAAACTAAACA+AGG - chr1_4:59533388-59533407 None:intergenic 25.0%
!! ATTCTGTTATTTAATGAAGG+TGG + chr1_4:59533436-59533455 Msa0174020:intron 25.0%
! TAAAATAGCTGAACAATTAC+CGG + chr1_4:59533461-59533480 Msa0174020:CDS 25.0%
!!! TTACAATTTAATGGATTGTG+CGG + chr1_4:59533800-59533819 Msa0174020:CDS 25.0%
ACTCCTCATTACATGAATAT+TGG - chr1_4:59532850-59532869 None:intergenic 30.0%
TGTAAGTCAAGAAGATACTA+TGG + chr1_4:59532899-59532918 Msa0174020:CDS 30.0%
GATACTATGGTGATAAAGAA+AGG + chr1_4:59532912-59532931 Msa0174020:CDS 30.0%
TACTATTCTGATGAACTATG+TGG + chr1_4:59532956-59532975 Msa0174020:CDS 30.0%
!!! GTTTTAGAAGGAAATAGAGT+TGG + chr1_4:59533394-59533413 Msa0174020:intron 30.0%
AAAATAGCTGAACAATTACC+GGG + chr1_4:59533462-59533481 Msa0174020:CDS 30.0%
ATGTAAACAGTCAACAGTTT+AGG + chr1_4:59533556-59533575 Msa0174020:CDS 30.0%
TGTAAACAGTCAACAGTTTA+GGG + chr1_4:59533557-59533576 Msa0174020:CDS 30.0%
! TTTGAACAGAGCAATGTTTT+TGG + chr1_4:59533876-59533895 Msa0174020:CDS 30.0%
TGTGGACAGATGAAAATATA+TGG + chr1_4:59533910-59533929 Msa0174020:CDS 30.0%
ACTCCTCATTACATGAATAT+TGG - chr1_4:59532850-59532869 None:intergenic 30.0%
TGTAAGTCAAGAAGATACTA+TGG + chr1_4:59532899-59532918 Msa0174020:CDS 30.0%
GATACTATGGTGATAAAGAA+AGG + chr1_4:59532912-59532931 Msa0174020:CDS 30.0%
TACTATTCTGATGAACTATG+TGG + chr1_4:59532956-59532975 Msa0174020:CDS 30.0%
!!! GTTTTAGAAGGAAATAGAGT+TGG + chr1_4:59533394-59533413 Msa0174020:intron 30.0%
AAAATAGCTGAACAATTACC+GGG + chr1_4:59533462-59533481 Msa0174020:CDS 30.0%
ATGTAAACAGTCAACAGTTT+AGG + chr1_4:59533556-59533575 Msa0174020:CDS 30.0%
TGTAAACAGTCAACAGTTTA+GGG + chr1_4:59533557-59533576 Msa0174020:CDS 30.0%
! TTTGAACAGAGCAATGTTTT+TGG + chr1_4:59533876-59533895 Msa0174020:CDS 30.0%
TGTGGACAGATGAAAATATA+TGG + chr1_4:59533910-59533929 Msa0174020:CDS 30.0%
!! ATGAGGAGTTTTTCAGATTG+TGG + chr1_4:59532861-59532880 Msa0174020:CDS 35.0%
! CAAGAATCAAGACTTGTTCT+TGG - chr1_4:59533109-59533128 None:intergenic 35.0%
AAACAAGGTTTGTGTGAAAG+AGG - chr1_4:59533350-59533369 None:intergenic 35.0%
GATACTAATTCCTATAGCCA+CGG + chr1_4:59533645-59533664 Msa0174020:CDS 35.0%
CAAGTTTCACTATGAGCTTT+AGG - chr1_4:59533693-59533712 None:intergenic 35.0%
AAAGCTCATAGTGAAACTTG+TGG + chr1_4:59533693-59533712 Msa0174020:CDS 35.0%
AAGCTCATAGTGAAACTTGT+GGG + chr1_4:59533694-59533713 Msa0174020:CDS 35.0%
CATTGCTCTGTTCAAATTCT+TGG - chr1_4:59533872-59533891 None:intergenic 35.0%
!! ATGAGGAGTTTTTCAGATTG+TGG + chr1_4:59532861-59532880 Msa0174020:CDS 35.0%
! CAAGAATCAAGACTTGTTCT+TGG - chr1_4:59533109-59533128 None:intergenic 35.0%
AAACAAGGTTTGTGTGAAAG+AGG - chr1_4:59533350-59533369 None:intergenic 35.0%
GATACTAATTCCTATAGCCA+CGG + chr1_4:59533645-59533664 Msa0174020:CDS 35.0%
CAAGTTTCACTATGAGCTTT+AGG - chr1_4:59533693-59533712 None:intergenic 35.0%
AAAGCTCATAGTGAAACTTG+TGG + chr1_4:59533693-59533712 Msa0174020:CDS 35.0%
AAGCTCATAGTGAAACTTGT+GGG + chr1_4:59533694-59533713 Msa0174020:CDS 35.0%
CATTGCTCTGTTCAAATTCT+TGG - chr1_4:59533872-59533891 None:intergenic 35.0%
TGGTGATAAAGAAAGGTCCA+TGG + chr1_4:59532919-59532938 Msa0174020:CDS 40.0%
! TCTTAATCTGCAGCTTTTCC+CGG - chr1_4:59533039-59533058 None:intergenic 40.0%
GGAAAAGCTGCAGATTAAGA+TGG + chr1_4:59533039-59533058 Msa0174020:CDS 40.0%
TTCTTGATCTTCATTCCCGT+TGG + chr1_4:59533123-59533142 Msa0174020:CDS 40.0%
TCTTGATCTTCATTCCCGTT+GGG + chr1_4:59533124-59533143 Msa0174020:CDS 40.0%
TGAACAATTACCGGGAAGAA+CGG + chr1_4:59533470-59533489 Msa0174020:CDS 40.0%
ATTTCATTGTCCGTTCTTCC+CGG - chr1_4:59533483-59533502 None:intergenic 40.0%
GAACTATTGGAGAACAAGAG+TGG + chr1_4:59533506-59533525 Msa0174020:CDS 40.0%
!! ATGAGCTTTAGGATTGTTGC+AGG - chr1_4:59533682-59533701 None:intergenic 40.0%
AGCTCATAGTGAAACTTGTG+GGG + chr1_4:59533695-59533714 Msa0174020:CDS 40.0%
!! TTTAATGGATTGTGCGGAAC+TGG + chr1_4:59533806-59533825 Msa0174020:CDS 40.0%
!! TTAATGGATTGTGCGGAACT+GGG + chr1_4:59533807-59533826 Msa0174020:CDS 40.0%
!!! GAACAGAGCAATGTTTTTGG+TGG + chr1_4:59533879-59533898 Msa0174020:CDS 40.0%
!!! GAGCAATGTTTTTGGTGGTT+CGG + chr1_4:59533884-59533903 Msa0174020:CDS 40.0%
!! TTTTTGGTGGTTCGGAATTG+TGG + chr1_4:59533892-59533911 Msa0174020:CDS 40.0%
TGGTGATAAAGAAAGGTCCA+TGG + chr1_4:59532919-59532938 Msa0174020:CDS 40.0%
! TCTTAATCTGCAGCTTTTCC+CGG - chr1_4:59533039-59533058 None:intergenic 40.0%
GGAAAAGCTGCAGATTAAGA+TGG + chr1_4:59533039-59533058 Msa0174020:CDS 40.0%
TTCTTGATCTTCATTCCCGT+TGG + chr1_4:59533123-59533142 Msa0174020:CDS 40.0%
TCTTGATCTTCATTCCCGTT+GGG + chr1_4:59533124-59533143 Msa0174020:CDS 40.0%
TGAACAATTACCGGGAAGAA+CGG + chr1_4:59533470-59533489 Msa0174020:CDS 40.0%
ATTTCATTGTCCGTTCTTCC+CGG - chr1_4:59533483-59533502 None:intergenic 40.0%
GAACTATTGGAGAACAAGAG+TGG + chr1_4:59533506-59533525 Msa0174020:CDS 40.0%
!! ATGAGCTTTAGGATTGTTGC+AGG - chr1_4:59533682-59533701 None:intergenic 40.0%
AGCTCATAGTGAAACTTGTG+GGG + chr1_4:59533695-59533714 Msa0174020:CDS 40.0%
!! TTTAATGGATTGTGCGGAAC+TGG + chr1_4:59533806-59533825 Msa0174020:CDS 40.0%
!! TTAATGGATTGTGCGGAACT+GGG + chr1_4:59533807-59533826 Msa0174020:CDS 40.0%
!!! GAACAGAGCAATGTTTTTGG+TGG + chr1_4:59533879-59533898 Msa0174020:CDS 40.0%
!!! GAGCAATGTTTTTGGTGGTT+CGG + chr1_4:59533884-59533903 Msa0174020:CDS 40.0%
!! TTTTTGGTGGTTCGGAATTG+TGG + chr1_4:59533892-59533911 Msa0174020:CDS 40.0%
ATGAACTATGTGGCAGTCCA+CGG + chr1_4:59532966-59532985 Msa0174020:CDS 45.0%
TGTTCGGGTCTAAAGAGAAC+CGG + chr1_4:59533017-59533036 Msa0174020:CDS 45.0%
TTACGTCCAAATGTTCGTCG+AGG + chr1_4:59533071-59533090 Msa0174020:CDS 45.0%
TACGTCCAAATGTTCGTCGA+GGG + chr1_4:59533072-59533091 Msa0174020:CDS 45.0%
ATGTTCCCTCGACGAACATT+TGG - chr1_4:59533080-59533099 None:intergenic 45.0%
CTTGATCTTCATTCCCGTTG+GGG + chr1_4:59533125-59533144 Msa0174020:CDS 45.0%
GGGACACATTGCGTTTAGTA+TGG + chr1_4:59533577-59533596 Msa0174020:CDS 45.0%
CTACAGTTGCACGAGATGTT+TGG - chr1_4:59533626-59533645 None:intergenic 45.0%
!! AGCTTTAGGATTGTTGCAGG+TGG - chr1_4:59533679-59533698 None:intergenic 45.0%
GAAACCTCTGACTGCAACAT+GGG - chr1_4:59533735-59533754 None:intergenic 45.0%
TGAAACCTCTGACTGCAACA+TGG - chr1_4:59533736-59533755 None:intergenic 45.0%
AGGTTTCATCGTACTCGTCA+GGG + chr1_4:59533748-59533767 Msa0174020:CDS 45.0%
ATGAACTATGTGGCAGTCCA+CGG + chr1_4:59532966-59532985 Msa0174020:CDS 45.0%
TGTTCGGGTCTAAAGAGAAC+CGG + chr1_4:59533017-59533036 Msa0174020:CDS 45.0%
TTACGTCCAAATGTTCGTCG+AGG + chr1_4:59533071-59533090 Msa0174020:CDS 45.0%
TACGTCCAAATGTTCGTCGA+GGG + chr1_4:59533072-59533091 Msa0174020:CDS 45.0%
ATGTTCCCTCGACGAACATT+TGG - chr1_4:59533080-59533099 None:intergenic 45.0%
CTTGATCTTCATTCCCGTTG+GGG + chr1_4:59533125-59533144 Msa0174020:CDS 45.0%
GGGACACATTGCGTTTAGTA+TGG + chr1_4:59533577-59533596 Msa0174020:CDS 45.0%
CTACAGTTGCACGAGATGTT+TGG - chr1_4:59533626-59533645 None:intergenic 45.0%
!! AGCTTTAGGATTGTTGCAGG+TGG - chr1_4:59533679-59533698 None:intergenic 45.0%
GAAACCTCTGACTGCAACAT+GGG - chr1_4:59533735-59533754 None:intergenic 45.0%
TGAAACCTCTGACTGCAACA+TGG - chr1_4:59533736-59533755 None:intergenic 45.0%
AGGTTTCATCGTACTCGTCA+GGG + chr1_4:59533748-59533767 Msa0174020:CDS 45.0%
GAAAGGTCCATGGACAGAAG+AGG + chr1_4:59532929-59532948 Msa0174020:CDS 50.0%
GTATCCTCCTCTTCTGTCCA+TGG - chr1_4:59532939-59532958 None:intergenic 50.0%
GTTCGGGTCTAAAGAGAACC+GGG + chr1_4:59533018-59533037 Msa0174020:CDS 50.0%
TTCATTCCCGTTGGGGCAAT+CGG + chr1_4:59533132-59533151 Msa0174020:CDS 50.0%
CAAGAGTGGTGAAGCAAGCT+AGG + chr1_4:59533520-59533539 Msa0174020:CDS 50.0%
TGGATTCTCTCGATGAGACG+TGG - chr1_4:59533606-59533625 None:intergenic 50.0%
! GGTGATTTGTCCGTGGCTAT+AGG - chr1_4:59533658-59533677 None:intergenic 50.0%
GAGGTTTCATCGTACTCGTC+AGG + chr1_4:59533747-59533766 Msa0174020:CDS 50.0%
GGTTTCATCGTACTCGTCAG+GGG + chr1_4:59533749-59533768 Msa0174020:CDS 50.0%
GAAAGGTCCATGGACAGAAG+AGG + chr1_4:59532929-59532948 Msa0174020:CDS 50.0%
GTATCCTCCTCTTCTGTCCA+TGG - chr1_4:59532939-59532958 None:intergenic 50.0%
GTTCGGGTCTAAAGAGAACC+GGG + chr1_4:59533018-59533037 Msa0174020:CDS 50.0%
TTCATTCCCGTTGGGGCAAT+CGG + chr1_4:59533132-59533151 Msa0174020:CDS 50.0%
CAAGAGTGGTGAAGCAAGCT+AGG + chr1_4:59533520-59533539 Msa0174020:CDS 50.0%
TGGATTCTCTCGATGAGACG+TGG - chr1_4:59533606-59533625 None:intergenic 50.0%
! GGTGATTTGTCCGTGGCTAT+AGG - chr1_4:59533658-59533677 None:intergenic 50.0%
GAGGTTTCATCGTACTCGTC+AGG + chr1_4:59533747-59533766 Msa0174020:CDS 50.0%
GGTTTCATCGTACTCGTCAG+GGG + chr1_4:59533749-59533768 Msa0174020:CDS 50.0%
AGGTCCATGGACAGAAGAGG+AGG + chr1_4:59532932-59532951 Msa0174020:CDS 55.0%
TATGTGGCAGTCCACGGAGA+TGG + chr1_4:59532972-59532991 Msa0174020:CDS 55.0%
AGTTCCAGTGACCATCTCCG+TGG - chr1_4:59532986-59533005 None:intergenic 55.0%
!! ACACGTACCGATTGCCCCAA+CGG - chr1_4:59533142-59533161 None:intergenic 55.0%
! TGCAGGTGGTGATTTGTCCG+TGG - chr1_4:59533665-59533684 None:intergenic 55.0%
TCCTCCCATGTTGCAGTCAG+AGG + chr1_4:59533728-59533747 Msa0174020:CDS 55.0%
ACCTCTGACTGCAACATGGG+AGG - chr1_4:59533732-59533751 None:intergenic 55.0%
AGGTCCATGGACAGAAGAGG+AGG + chr1_4:59532932-59532951 Msa0174020:CDS 55.0%
TATGTGGCAGTCCACGGAGA+TGG + chr1_4:59532972-59532991 Msa0174020:CDS 55.0%
AGTTCCAGTGACCATCTCCG+TGG - chr1_4:59532986-59533005 None:intergenic 55.0%
!! ACACGTACCGATTGCCCCAA+CGG - chr1_4:59533142-59533161 None:intergenic 55.0%
! TGCAGGTGGTGATTTGTCCG+TGG - chr1_4:59533665-59533684 None:intergenic 55.0%
TCCTCCCATGTTGCAGTCAG+AGG + chr1_4:59533728-59533747 Msa0174020:CDS 55.0%
ACCTCTGACTGCAACATGGG+AGG - chr1_4:59533732-59533751 None:intergenic 55.0%
CAGTCCACGGAGATGGTCAC+TGG + chr1_4:59532979-59532998 Msa0174020:CDS 60.0%
GAACTCCGTCGCTCGCTGTT+CGG + chr1_4:59533001-59533020 Msa0174020:CDS 60.0%
AACTCCGTCGCTCGCTGTTC+GGG + chr1_4:59533002-59533021 Msa0174020:CDS 60.0%
TAGACCCGAACAGCGAGCGA+CGG - chr1_4:59533009-59533028 None:intergenic 60.0%
!! CACGTACCGATTGCCCCAAC+GGG - chr1_4:59533141-59533160 None:intergenic 60.0%
GGAACTGGGATCCACGTTGC+AGG + chr1_4:59533821-59533840 Msa0174020:CDS 60.0%
TGGGATCCACGTTGCAGGAG+TGG + chr1_4:59533826-59533845 Msa0174020:CDS 60.0%
GCAGTTCCACTCCTGCAACG+TGG - chr1_4:59533835-59533854 None:intergenic 60.0%
CAGTCCACGGAGATGGTCAC+TGG + chr1_4:59532979-59532998 Msa0174020:CDS 60.0%
GAACTCCGTCGCTCGCTGTT+CGG + chr1_4:59533001-59533020 Msa0174020:CDS 60.0%
AACTCCGTCGCTCGCTGTTC+GGG + chr1_4:59533002-59533021 Msa0174020:CDS 60.0%
TAGACCCGAACAGCGAGCGA+CGG - chr1_4:59533009-59533028 None:intergenic 60.0%
!! CACGTACCGATTGCCCCAAC+GGG - chr1_4:59533141-59533160 None:intergenic 60.0%
GGAACTGGGATCCACGTTGC+AGG + chr1_4:59533821-59533840 Msa0174020:CDS 60.0%
TGGGATCCACGTTGCAGGAG+TGG + chr1_4:59533826-59533845 Msa0174020:CDS 60.0%
GCAGTTCCACTCCTGCAACG+TGG - chr1_4:59533835-59533854 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59532828 59533965 59532828 ID=Msa0174020;Name=Msa0174020
chr1_4 mRNA 59532828 59533965 59532828 ID=Msa0174020-mRNA-1;Parent=Msa0174020;Name=Msa0174020-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|1|0|1|1|1|2|0|278
chr1_4 exon 59532828 59533153 59532828 ID=Msa0174020-mRNA-1:exon:18688;Parent=Msa0174020-mRNA-1
chr1_4 exon 59533455 59533965 59533455 ID=Msa0174020-mRNA-1:exon:18689;Parent=Msa0174020-mRNA-1
chr1_4 CDS 59532828 59533153 59532828 ID=Msa0174020-mRNA-1:cds;Parent=Msa0174020-mRNA-1
chr1_4 CDS 59533455 59533965 59533455 ID=Msa0174020-mRNA-1:cds;Parent=Msa0174020-mRNA-1
Gene Sequence

>Msa0174020

ATGGATACTAATTACAAAACCAATATTCATGTAATGAGGAGTTTTTCAGATTGTGGTTCATCAGTAACAAATGTAAGTCAAGAAGATACTATGGTGATAAAGAAAGGTCCATGGACAGAAGAGGAGGATACTATTCTGATGAACTATGTGGCAGTCCACGGAGATGGTCACTGGAACTCCGTCGCTCGCTGTTCGGGTCTAAAGAGAACCGGGAAAAGCTGCAGATTAAGATGGTTGAACTACTTACGTCCAAATGTTCGTCGAGGGAACATCACTCTCCAAGAACAAGTCTTGATTCTTGATCTTCATTCCCGTTGGGGCAATCGGTGGTCTAAAATAGCTGAACAATTACCGGGAAGAACGGACAATGAAATAAAGAACTATTGGAGAACAAGAGTGGTGAAGCAAGCTAGGCAACTAAAATGTGATGTAAACAGTCAACAGTTTAGGGACACATTGCGTTTAGTATGGATTCCACGTCTCATCGAGAGAATCCAAACATCTCGTGCAACTGTAGATACTAATTCCTATAGCCACGGACAAATCACCACCTGCAACAATCCTAAAGCTCATAGTGAAACTTGTGGGGCAAATGCAAATCCTCCCATGTTGCAGTCAGAGGTTTCATCGTACTCGTCAGGGGTTGATGTTCAAGTAGAATCAAACGTATCTTACAATTTAATGGATTGTGCGGAACTGGGATCCACGTTGCAGGAGTGGAACTGCTTAGACTCAAACATCCAAGAATTTGAACAGAGCAATGTTTTTGGTGGTTCGGAATTGTGGACAGATGAAAATATATGGTTCTTGCAGCAGCAACTTGCTGATGATTTATGA
Protein sequence

>Msa0174020

MDTNYKTNIHVMRSFSDCGSSVTNVSQEDTMVIKKGPWTEEEDTILMNYVAVHGDGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQVLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSQQFRDTLRLVWIPRLIERIQTSRATVDTNSYSHGQITTCNNPKAHSETCGANANPPMLQSEVSSYSSGVDVQVESNVSYNLMDCAELGSTLQEWNCLDSNIQEFEQSNVFGGSELWTDENIWFLQQQLADDL*