Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175250 | XP_024630769.2 | 95.000 | 60 | 3 | 0 | 87 | 146 | 315 | 374 | 2.03e-28 | 124 |
Msa0175250 | XP_024630769.2 | 96.104 | 77 | 3 | 0 | 153 | 229 | 477 | 553 | 7.79e-39 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175250 | A0A072VK17 | 95.652 | 69 | 3 | 0 | 1 | 69 | 55 | 123 | 3.12e-38 | 139 |
Gene ID | Type | Classification |
---|---|---|
Msa0175250 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175250 | MtrunA17_Chr3g0082121 | 76.056 | 71 | 17 | 0 | 1 | 71 | 64 | 134 | 3.62e-29 | 114 |
Msa0175250 | MtrunA17_Chr3g0082121 | 52.326 | 86 | 33 | 2 | 140 | 223 | 614 | 693 | 1.65e-19 | 86.7 |
Msa0175250 | MtrunA17_Chr3g0082121 | 72.131 | 61 | 17 | 0 | 86 | 146 | 458 | 518 | 2.25e-13 | 68.9 |
Msa0175250 | MtrunA17_Chr5g0401121 | 67.606 | 71 | 23 | 0 | 1 | 71 | 77 | 147 | 6.34e-24 | 94.0 |
Msa0175250 | MtrunA17_Chr6g0458391 | 42.373 | 59 | 34 | 0 | 2 | 60 | 247 | 305 | 4.38e-12 | 65.1 |
Msa0175250 | MtrunA17_Chr1g0203721 | 39.130 | 69 | 41 | 1 | 3 | 71 | 86 | 153 | 4.66e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 27 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCAAGATACTTGCATAAA+AGG | 0.217633 | 1_4:+61139414 | Msa0175250:CDS |
TTCATCATTCGCAATTGATA+TGG | 0.254192 | 1_4:-61139887 | None:intergenic |
ACGCGCTGTGCATCCTGTTC+TGG | 0.282615 | 1_4:-61138193 | None:intergenic |
TTTGGTATTCGTCGAGAATA+TGG | 0.287007 | 1_4:+61138057 | Msa0175250:CDS |
AATGATTATAGTAAAAGAAT+TGG | 0.319753 | 1_4:+61138033 | None:intergenic |
ATGAGATTCTGAAGCTCTAT+TGG | 0.322184 | 1_4:-61139755 | None:intergenic |
TATAGTAAAAGAATTGGATT+TGG | 0.342872 | 1_4:+61138039 | None:intergenic |
GGAAATAAAAGCAGAATAGA+TGG | 0.381196 | 1_4:+61138078 | Msa0175250:CDS |
GTTGGACTCTTCATAAACTT+TGG | 0.396971 | 1_4:-61139797 | None:intergenic |
TCGAAAGATAGGGAAATATA+AGG | 0.398025 | 1_4:+61138233 | Msa0175250:CDS |
ATTTGGAGTGTAAACATTTG+CGG | 0.445050 | 1_4:-61139358 | None:intergenic |
AAAGGGATGTCAATGCTAAA+CGG | 0.487954 | 1_4:+61139253 | Msa0175250:intron |
AACAGGATGCACAGCGCGTA+TGG | 0.489143 | 1_4:+61138197 | Msa0175250:CDS |
GGCAAAATGCATAAAGATGA+AGG | 0.490221 | 1_4:+61139939 | Msa0175250:CDS |
GCATAAAAGGAGGTGAAAGA+AGG | 0.500971 | 1_4:+61139427 | Msa0175250:CDS |
GCCTAAATTGAAAATGAAGA+AGG | 0.516431 | 1_4:+61139317 | Msa0175250:CDS |
TCTAAAGCAGAAACCAGAAC+AGG | 0.540723 | 1_4:+61138180 | Msa0175250:CDS |
CAACATAGACACCGTTGGCA+AGG | 0.578457 | 1_4:+61139918 | Msa0175250:CDS |
GGATGGAGAATCAAGTGGAA+TGG | 0.591122 | 1_4:+61139855 | Msa0175250:CDS |
TCTGCTTTAGACTCCGCCGT+CGG | 0.605472 | 1_4:-61138168 | None:intergenic |
CAAGATACTTGCATAAAAGG+AGG | 0.623387 | 1_4:+61139417 | Msa0175250:CDS |
AAGATTCACATGCTTCAAAG+AGG | 0.641966 | 1_4:+61138116 | Msa0175250:CDS |
GACAACAACATAGACACCGT+TGG | 0.650357 | 1_4:+61139913 | Msa0175250:CDS |
AGATTCACATGCTTCAAAGA+GGG | 0.653445 | 1_4:+61138117 | Msa0175250:CDS |
TGACAAAAGACGTCAACCGA+CGG | 0.667263 | 1_4:+61138152 | Msa0175250:CDS |
TATCTGGATGGAGAATCAAG+TGG | 0.685001 | 1_4:+61139850 | Msa0175250:CDS |
CAAAAGACGTCAACCGACGG+CGG | 0.706901 | 1_4:+61138155 | Msa0175250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTCTTTTATGATTTTCAAA+TGG | + | chr1_4:61138558-61138577 | Msa0175250:intron | 15.0% |
!!! | AGCTAATAACAAATATATTT+TGG | + | chr1_4:61138590-61138609 | Msa0175250:intron | 15.0% |
!!! | GCTAATAACAAATATATTTT+GGG | + | chr1_4:61138591-61138610 | Msa0175250:intron | 15.0% |
!!! | TTTTTAAATTGAAGGAAAAA+TGG | + | chr1_4:61139100-61139119 | Msa0175250:intron | 15.0% |
!!! | TTTTAAATTGAAGGAAAAAT+GGG | + | chr1_4:61139101-61139120 | Msa0175250:intron | 15.0% |
!!! | AATTTTTTACTCACTTTAAA+AGG | + | chr1_4:61139235-61139254 | Msa0175250:intron | 15.0% |
!!! | ATTTTTTACTCACTTTAAAA+GGG | + | chr1_4:61139236-61139255 | Msa0175250:intron | 15.0% |
!!! | ATTCTTTTATGATTTTCAAA+TGG | + | chr1_4:61138558-61138577 | Msa0175250:intron | 15.0% |
!!! | AGCTAATAACAAATATATTT+TGG | + | chr1_4:61138590-61138609 | Msa0175250:intron | 15.0% |
!!! | GCTAATAACAAATATATTTT+GGG | + | chr1_4:61138591-61138610 | Msa0175250:intron | 15.0% |
!!! | TTTTTAAATTGAAGGAAAAA+TGG | + | chr1_4:61139100-61139119 | Msa0175250:intron | 15.0% |
!!! | TTTTAAATTGAAGGAAAAAT+GGG | + | chr1_4:61139101-61139120 | Msa0175250:intron | 15.0% |
!!! | AATTTTTTACTCACTTTAAA+AGG | + | chr1_4:61139235-61139254 | Msa0175250:intron | 15.0% |
!!! | ATTTTTTACTCACTTTAAAA+GGG | + | chr1_4:61139236-61139255 | Msa0175250:intron | 15.0% |
!! | TGAAAATCATAAAAGAATGA+TGG | - | chr1_4:61138556-61138575 | None:intergenic | 20.0% |
!!! | AATAACAAATATATTTTGGG+CGG | + | chr1_4:61138594-61138613 | Msa0175250:intron | 20.0% |
!! | ATTAATGATTATGGATACTT+TGG | + | chr1_4:61138628-61138647 | Msa0175250:intron | 20.0% |
!!! | AAAGTGAATTTTTGAATGAA+TGG | + | chr1_4:61139025-61139044 | Msa0175250:intron | 20.0% |
!!! | GCATTCAATTTTTAAATTGA+AGG | + | chr1_4:61139092-61139111 | Msa0175250:intron | 20.0% |
!! | AATTTATATCTGACTTCAAA+TGG | - | chr1_4:61139209-61139228 | None:intergenic | 20.0% |
!!! | TTTGAAGTCAGATATAAATT+TGG | + | chr1_4:61139209-61139228 | Msa0175250:intron | 20.0% |
!! | TGAAATTCCTCAAAAAAATT+TGG | - | chr1_4:61139378-61139397 | None:intergenic | 20.0% |
!!! | CATATCATTAACTATTTTGT+TGG | - | chr1_4:61139818-61139837 | None:intergenic | 20.0% |
!! | TGAAAATCATAAAAGAATGA+TGG | - | chr1_4:61138556-61138575 | None:intergenic | 20.0% |
!!! | AATAACAAATATATTTTGGG+CGG | + | chr1_4:61138594-61138613 | Msa0175250:intron | 20.0% |
!! | ATTAATGATTATGGATACTT+TGG | + | chr1_4:61138628-61138647 | Msa0175250:intron | 20.0% |
!!! | AAAGTGAATTTTTGAATGAA+TGG | + | chr1_4:61139025-61139044 | Msa0175250:intron | 20.0% |
!!! | GCATTCAATTTTTAAATTGA+AGG | + | chr1_4:61139092-61139111 | Msa0175250:intron | 20.0% |
!! | AATTTATATCTGACTTCAAA+TGG | - | chr1_4:61139209-61139228 | None:intergenic | 20.0% |
!!! | TTTGAAGTCAGATATAAATT+TGG | + | chr1_4:61139209-61139228 | Msa0175250:intron | 20.0% |
!! | TGAAATTCCTCAAAAAAATT+TGG | - | chr1_4:61139378-61139397 | None:intergenic | 20.0% |
!!! | CATATCATTAACTATTTTGT+TGG | - | chr1_4:61139818-61139837 | None:intergenic | 20.0% |
!! | ATTTTACTTGATCGAAAGAT+AGG | + | chr1_4:61138222-61138241 | Msa0175250:CDS | 25.0% |
!! | TTTTACTTGATCGAAAGATA+GGG | + | chr1_4:61138223-61138242 | Msa0175250:CDS | 25.0% |
! | ATATATTGATGCAATTCTCT+TGG | - | chr1_4:61138391-61138410 | None:intergenic | 25.0% |
!!! | TGGTTTTAAGCAAATTCTTA+AGG | - | chr1_4:61138462-61138481 | None:intergenic | 25.0% |
!! | AGAATTTGCTTAAAACCAAA+AGG | + | chr1_4:61138464-61138483 | Msa0175250:intron | 25.0% |
!! | TTGTTTGAAATATGTCATCA+AGG | - | chr1_4:61138521-61138540 | None:intergenic | 25.0% |
!!! | ATAATGTTTTGAAAGATTCG+TGG | + | chr1_4:61139067-61139086 | Msa0175250:intron | 25.0% |
! | TTATGTTCGAAAAACATTCA+CGG | + | chr1_4:61139131-61139150 | Msa0175250:CDS | 25.0% |
!!! | TTACACTCCAAATTTTTTTG+AGG | + | chr1_4:61139368-61139387 | Msa0175250:CDS | 25.0% |
!!! | TTTTTTTGAGGAATTTCAAG+AGG | + | chr1_4:61139380-61139399 | Msa0175250:CDS | 25.0% |
! | TATCAAGATACTTGCATAAA+AGG | + | chr1_4:61139414-61139433 | Msa0175250:CDS | 25.0% |
!! | CACAAATTATGATAATGCAA+AGG | + | chr1_4:61139462-61139481 | Msa0175250:intron | 25.0% |
! | TATGTTGTCCAAAAAATATC+TGG | + | chr1_4:61139834-61139853 | Msa0175250:CDS | 25.0% |
!! | ATTTTACTTGATCGAAAGAT+AGG | + | chr1_4:61138222-61138241 | Msa0175250:CDS | 25.0% |
!! | TTTTACTTGATCGAAAGATA+GGG | + | chr1_4:61138223-61138242 | Msa0175250:CDS | 25.0% |
! | ATATATTGATGCAATTCTCT+TGG | - | chr1_4:61138391-61138410 | None:intergenic | 25.0% |
!!! | TGGTTTTAAGCAAATTCTTA+AGG | - | chr1_4:61138462-61138481 | None:intergenic | 25.0% |
!! | AGAATTTGCTTAAAACCAAA+AGG | + | chr1_4:61138464-61138483 | Msa0175250:intron | 25.0% |
!! | TTGTTTGAAATATGTCATCA+AGG | - | chr1_4:61138521-61138540 | None:intergenic | 25.0% |
!!! | ATAATGTTTTGAAAGATTCG+TGG | + | chr1_4:61139067-61139086 | Msa0175250:intron | 25.0% |
! | TTATGTTCGAAAAACATTCA+CGG | + | chr1_4:61139131-61139150 | Msa0175250:CDS | 25.0% |
!!! | TTACACTCCAAATTTTTTTG+AGG | + | chr1_4:61139368-61139387 | Msa0175250:CDS | 25.0% |
!!! | TTTTTTTGAGGAATTTCAAG+AGG | + | chr1_4:61139380-61139399 | Msa0175250:CDS | 25.0% |
! | TATCAAGATACTTGCATAAA+AGG | + | chr1_4:61139414-61139433 | Msa0175250:CDS | 25.0% |
!! | CACAAATTATGATAATGCAA+AGG | + | chr1_4:61139462-61139481 | Msa0175250:intron | 25.0% |
! | TATGTTGTCCAAAAAATATC+TGG | + | chr1_4:61139834-61139853 | Msa0175250:CDS | 25.0% |
GGAAATAAAAGCAGAATAGA+TGG | + | chr1_4:61138078-61138097 | Msa0175250:CDS | 30.0% | |
TCGAAAGATAGGGAAATATA+AGG | + | chr1_4:61138233-61138252 | Msa0175250:CDS | 30.0% | |
AGAATCATATGAACATACTC+AGG | - | chr1_4:61138300-61138319 | None:intergenic | 30.0% | |
TAAGCAAATTCTTAAGGTCT+TGG | - | chr1_4:61138456-61138475 | None:intergenic | 30.0% | |
GCACAGATGATTAATGATTA+TGG | + | chr1_4:61138619-61138638 | Msa0175250:intron | 30.0% | |
! | ATCCTTATTTGTCTTGTAAG+TGG | - | chr1_4:61138674-61138693 | None:intergenic | 30.0% |
AAATAAGGATTATCGACCTT+TGG | + | chr1_4:61138684-61138703 | Msa0175250:intron | 30.0% | |
AATAAGGATTATCGACCTTT+GGG | + | chr1_4:61138685-61138704 | Msa0175250:intron | 30.0% | |
TTGTTGGACTTAATAATCAC+AGG | + | chr1_4:61138713-61138732 | Msa0175250:intron | 30.0% | |
! | AAACAATTCGTTCTTTTCAG+TGG | + | chr1_4:61138773-61138792 | Msa0175250:intron | 30.0% |
!! | TGAAACTTTTCTGAAAGAAG+TGG | + | chr1_4:61138801-61138820 | Msa0175250:intron | 30.0% |
!! | GAAACTTTTCTGAAAGAAGT+GGG | + | chr1_4:61138802-61138821 | Msa0175250:intron | 30.0% |
! | TGATCTGTTAGAATGGTTTT+AGG | - | chr1_4:61138838-61138857 | None:intergenic | 30.0% |
GTTATGCCAAAAACATTTCA+TGG | + | chr1_4:61138889-61138908 | Msa0175250:intron | 30.0% | |
! | CACAATCCATGAAATGTTTT+TGG | - | chr1_4:61138898-61138917 | None:intergenic | 30.0% |
ATATAAGACAGAATGCTCTT+AGG | + | chr1_4:61138926-61138945 | Msa0175250:intron | 30.0% | |
GCCTAAATTGAAAATGAAGA+AGG | + | chr1_4:61139317-61139336 | Msa0175250:CDS | 30.0% | |
! | GCCTTCTTCATTTTCAATTT+AGG | - | chr1_4:61139321-61139340 | None:intergenic | 30.0% |
! | ATTTGGAGTGTAAACATTTG+CGG | - | chr1_4:61139361-61139380 | None:intergenic | 30.0% |
! | CAAGAAACTTTTTGTTCCAT+AGG | - | chr1_4:61139508-61139527 | None:intergenic | 30.0% |
!! | TCGTTTTAGTATGTAGTGTT+CGG | - | chr1_4:61139614-61139633 | None:intergenic | 30.0% |
AACACTACATACTAAAACGA+TGG | + | chr1_4:61139614-61139633 | Msa0175250:intron | 30.0% | |
TTGTCCAAAAAATATCTGGA+TGG | + | chr1_4:61139838-61139857 | Msa0175250:CDS | 30.0% | |
!!! | TTCTCCATCCAGATATTTTT+TGG | - | chr1_4:61139845-61139864 | None:intergenic | 30.0% |
TTCATCATTCGCAATTGATA+TGG | - | chr1_4:61139890-61139909 | None:intergenic | 30.0% | |
GGAAATAAAAGCAGAATAGA+TGG | + | chr1_4:61138078-61138097 | Msa0175250:CDS | 30.0% | |
TCGAAAGATAGGGAAATATA+AGG | + | chr1_4:61138233-61138252 | Msa0175250:CDS | 30.0% | |
AGAATCATATGAACATACTC+AGG | - | chr1_4:61138300-61138319 | None:intergenic | 30.0% | |
TAAGCAAATTCTTAAGGTCT+TGG | - | chr1_4:61138456-61138475 | None:intergenic | 30.0% | |
GCACAGATGATTAATGATTA+TGG | + | chr1_4:61138619-61138638 | Msa0175250:intron | 30.0% | |
! | ATCCTTATTTGTCTTGTAAG+TGG | - | chr1_4:61138674-61138693 | None:intergenic | 30.0% |
AAATAAGGATTATCGACCTT+TGG | + | chr1_4:61138684-61138703 | Msa0175250:intron | 30.0% | |
AATAAGGATTATCGACCTTT+GGG | + | chr1_4:61138685-61138704 | Msa0175250:intron | 30.0% | |
TTGTTGGACTTAATAATCAC+AGG | + | chr1_4:61138713-61138732 | Msa0175250:intron | 30.0% | |
! | AAACAATTCGTTCTTTTCAG+TGG | + | chr1_4:61138773-61138792 | Msa0175250:intron | 30.0% |
!! | TGAAACTTTTCTGAAAGAAG+TGG | + | chr1_4:61138801-61138820 | Msa0175250:intron | 30.0% |
!! | GAAACTTTTCTGAAAGAAGT+GGG | + | chr1_4:61138802-61138821 | Msa0175250:intron | 30.0% |
! | TGATCTGTTAGAATGGTTTT+AGG | - | chr1_4:61138838-61138857 | None:intergenic | 30.0% |
GTTATGCCAAAAACATTTCA+TGG | + | chr1_4:61138889-61138908 | Msa0175250:intron | 30.0% | |
! | CACAATCCATGAAATGTTTT+TGG | - | chr1_4:61138898-61138917 | None:intergenic | 30.0% |
ATATAAGACAGAATGCTCTT+AGG | + | chr1_4:61138926-61138945 | Msa0175250:intron | 30.0% | |
GCCTAAATTGAAAATGAAGA+AGG | + | chr1_4:61139317-61139336 | Msa0175250:CDS | 30.0% | |
! | GCCTTCTTCATTTTCAATTT+AGG | - | chr1_4:61139321-61139340 | None:intergenic | 30.0% |
! | ATTTGGAGTGTAAACATTTG+CGG | - | chr1_4:61139361-61139380 | None:intergenic | 30.0% |
! | CAAGAAACTTTTTGTTCCAT+AGG | - | chr1_4:61139508-61139527 | None:intergenic | 30.0% |
!! | TCGTTTTAGTATGTAGTGTT+CGG | - | chr1_4:61139614-61139633 | None:intergenic | 30.0% |
AACACTACATACTAAAACGA+TGG | + | chr1_4:61139614-61139633 | Msa0175250:intron | 30.0% | |
TTGTCCAAAAAATATCTGGA+TGG | + | chr1_4:61139838-61139857 | Msa0175250:CDS | 30.0% | |
!!! | TTCTCCATCCAGATATTTTT+TGG | - | chr1_4:61139845-61139864 | None:intergenic | 30.0% |
TTCATCATTCGCAATTGATA+TGG | - | chr1_4:61139890-61139909 | None:intergenic | 30.0% | |
TTTGGTATTCGTCGAGAATA+TGG | + | chr1_4:61138057-61138076 | Msa0175250:CDS | 35.0% | |
AAGATTCACATGCTTCAAAG+AGG | + | chr1_4:61138116-61138135 | Msa0175250:CDS | 35.0% | |
AGATTCACATGCTTCAAAGA+GGG | + | chr1_4:61138117-61138136 | Msa0175250:CDS | 35.0% | |
ATCATATGAACATACTCAGG+TGG | - | chr1_4:61138297-61138316 | None:intergenic | 35.0% | |
! | TCCTATCGACACATATTTTG+AGG | + | chr1_4:61138321-61138340 | Msa0175250:intron | 35.0% |
ACAAGCATCACAAATTGTCT+TGG | + | chr1_4:61138345-61138364 | Msa0175250:intron | 35.0% | |
CAAGCATCACAAATTGTCTT+GGG | + | chr1_4:61138346-61138365 | Msa0175250:intron | 35.0% | |
CAATATATATCCAAGCAAGC+TGG | + | chr1_4:61138403-61138422 | Msa0175250:intron | 35.0% | |
! | CTTTAGTGATTGCTTCCTTT+TGG | - | chr1_4:61138482-61138501 | None:intergenic | 35.0% |
AGGAAGCAATCACTAAAGTA+CGG | + | chr1_4:61138484-61138503 | Msa0175250:intron | 35.0% | |
CACCACTTACAAGACAAATA+AGG | + | chr1_4:61138669-61138688 | Msa0175250:intron | 35.0% | |
TGCATCTTGATCTGTTAGAA+TGG | - | chr1_4:61138845-61138864 | None:intergenic | 35.0% | |
! | GCGAACTCTTTTGATATAGA+TGG | - | chr1_4:61138960-61138979 | None:intergenic | 35.0% |
TGCATGCTTCAAAATCCAAA+TGG | - | chr1_4:61138987-61139006 | None:intergenic | 35.0% | |
ATTGAAGGAAAAATGGGCAT+AGG | + | chr1_4:61139107-61139126 | Msa0175250:intron | 35.0% | |
AAAGGGATGTCAATGCTAAA+CGG | + | chr1_4:61139253-61139272 | Msa0175250:intron | 35.0% | |
CAAGATACTTGCATAAAAGG+AGG | + | chr1_4:61139417-61139436 | Msa0175250:CDS | 35.0% | |
! | TGATAATGCAAAGGAGAAGA+TGG | + | chr1_4:61139471-61139490 | Msa0175250:intron | 35.0% |
! | TGTCGTAAATTTGAGACACA+TGG | + | chr1_4:61139532-61139551 | Msa0175250:intron | 35.0% |
!! | CGTTTTAGTATGTAGTGTTC+GGG | - | chr1_4:61139613-61139632 | None:intergenic | 35.0% |
TTGGTCAATTTAAGCAACTG+AGG | - | chr1_4:61139739-61139758 | None:intergenic | 35.0% | |
!! | ATGAGATTCTGAAGCTCTAT+TGG | - | chr1_4:61139758-61139777 | None:intergenic | 35.0% |
GTTGGACTCTTCATAAACTT+TGG | - | chr1_4:61139800-61139819 | None:intergenic | 35.0% | |
GGCAAAATGCATAAAGATGA+AGG | + | chr1_4:61139939-61139958 | Msa0175250:CDS | 35.0% | |
TTTGGTATTCGTCGAGAATA+TGG | + | chr1_4:61138057-61138076 | Msa0175250:CDS | 35.0% | |
AAGATTCACATGCTTCAAAG+AGG | + | chr1_4:61138116-61138135 | Msa0175250:CDS | 35.0% | |
AGATTCACATGCTTCAAAGA+GGG | + | chr1_4:61138117-61138136 | Msa0175250:CDS | 35.0% | |
ATCATATGAACATACTCAGG+TGG | - | chr1_4:61138297-61138316 | None:intergenic | 35.0% | |
! | TCCTATCGACACATATTTTG+AGG | + | chr1_4:61138321-61138340 | Msa0175250:intron | 35.0% |
ACAAGCATCACAAATTGTCT+TGG | + | chr1_4:61138345-61138364 | Msa0175250:intron | 35.0% | |
CAAGCATCACAAATTGTCTT+GGG | + | chr1_4:61138346-61138365 | Msa0175250:intron | 35.0% | |
CAATATATATCCAAGCAAGC+TGG | + | chr1_4:61138403-61138422 | Msa0175250:intron | 35.0% | |
! | CTTTAGTGATTGCTTCCTTT+TGG | - | chr1_4:61138482-61138501 | None:intergenic | 35.0% |
AGGAAGCAATCACTAAAGTA+CGG | + | chr1_4:61138484-61138503 | Msa0175250:intron | 35.0% | |
CACCACTTACAAGACAAATA+AGG | + | chr1_4:61138669-61138688 | Msa0175250:intron | 35.0% | |
TGCATCTTGATCTGTTAGAA+TGG | - | chr1_4:61138845-61138864 | None:intergenic | 35.0% | |
! | GCGAACTCTTTTGATATAGA+TGG | - | chr1_4:61138960-61138979 | None:intergenic | 35.0% |
TGCATGCTTCAAAATCCAAA+TGG | - | chr1_4:61138987-61139006 | None:intergenic | 35.0% | |
ATTGAAGGAAAAATGGGCAT+AGG | + | chr1_4:61139107-61139126 | Msa0175250:intron | 35.0% | |
AAAGGGATGTCAATGCTAAA+CGG | + | chr1_4:61139253-61139272 | Msa0175250:intron | 35.0% | |
CAAGATACTTGCATAAAAGG+AGG | + | chr1_4:61139417-61139436 | Msa0175250:CDS | 35.0% | |
! | TGATAATGCAAAGGAGAAGA+TGG | + | chr1_4:61139471-61139490 | Msa0175250:intron | 35.0% |
! | TGTCGTAAATTTGAGACACA+TGG | + | chr1_4:61139532-61139551 | Msa0175250:intron | 35.0% |
!! | CGTTTTAGTATGTAGTGTTC+GGG | - | chr1_4:61139613-61139632 | None:intergenic | 35.0% |
TTGGTCAATTTAAGCAACTG+AGG | - | chr1_4:61139739-61139758 | None:intergenic | 35.0% | |
!! | ATGAGATTCTGAAGCTCTAT+TGG | - | chr1_4:61139758-61139777 | None:intergenic | 35.0% |
GTTGGACTCTTCATAAACTT+TGG | - | chr1_4:61139800-61139819 | None:intergenic | 35.0% | |
GGCAAAATGCATAAAGATGA+AGG | + | chr1_4:61139939-61139958 | Msa0175250:CDS | 35.0% | |
! | TCTAAAGCAGAAACCAGAAC+AGG | + | chr1_4:61138180-61138199 | Msa0175250:CDS | 40.0% |
! | GCCTCAAAATATGTGTCGAT+AGG | - | chr1_4:61138325-61138344 | None:intergenic | 40.0% |
ATTGTCTTGGGAGATGAATC+TGG | + | chr1_4:61138358-61138377 | Msa0175250:intron | 40.0% | |
TATATATCCAAGCAAGCTGG+TGG | + | chr1_4:61138406-61138425 | Msa0175250:intron | 40.0% | |
ATATATCCAAGCAAGCTGGT+GGG | + | chr1_4:61138407-61138426 | Msa0175250:intron | 40.0% | |
ATCACTAAAGTACGGTGAAG+TGG | + | chr1_4:61138492-61138511 | Msa0175250:intron | 40.0% | |
TCACTAAAGTACGGTGAAGT+GGG | + | chr1_4:61138493-61138512 | Msa0175250:intron | 40.0% | |
AGTCCAACAAATACACCCAA+AGG | - | chr1_4:61138703-61138722 | None:intergenic | 40.0% | |
!!! | ACAGGCAAACCGTCATTTTT+GGG | + | chr1_4:61138731-61138750 | Msa0175250:intron | 40.0% |
CAATGTTGCCCCAAAAATGA+CGG | - | chr1_4:61138743-61138762 | None:intergenic | 40.0% | |
!! | ACTTTTCTGAAAGAAGTGGG+TGG | + | chr1_4:61138805-61138824 | Msa0175250:intron | 40.0% |
AACAGATCAAGATGCAGCAA+TGG | + | chr1_4:61138849-61138868 | Msa0175250:intron | 40.0% | |
! | CATTTCATGGATTGTGCACT+TGG | + | chr1_4:61138902-61138921 | Msa0175250:intron | 40.0% |
AAAGAGTTCGCGATTCCATT+TGG | + | chr1_4:61138969-61138988 | Msa0175250:intron | 40.0% | |
AGCATGCATAGATCTAGATG+AGG | + | chr1_4:61138999-61139018 | Msa0175250:intron | 40.0% | |
ATGCATAGATCTAGATGAGG+AGG | + | chr1_4:61139002-61139021 | Msa0175250:intron | 40.0% | |
GCATAAAAGGAGGTGAAAGA+AGG | + | chr1_4:61139427-61139446 | Msa0175250:CDS | 40.0% | |
TGCAAAGGAGAAGATGGTAA+TGG | + | chr1_4:61139477-61139496 | Msa0175250:intron | 40.0% | |
GCAAAGGAGAAGATGGTAAT+GGG | + | chr1_4:61139478-61139497 | Msa0175250:intron | 40.0% | |
!! | GATGGTAATGGGAAATCCTA+TGG | + | chr1_4:61139489-61139508 | Msa0175250:intron | 40.0% |
GAAGTAATCAAGGTTGGAGT+GGG | + | chr1_4:61139656-61139675 | Msa0175250:intron | 40.0% | |
AAAAAGCCCATTTCACGAAG+CGG | + | chr1_4:61139698-61139717 | Msa0175250:intron | 40.0% | |
ATTGTACCGCTTCGTGAAAT+GGG | - | chr1_4:61139707-61139726 | None:intergenic | 40.0% | |
TATCTGGATGGAGAATCAAG+TGG | + | chr1_4:61139850-61139869 | Msa0175250:CDS | 40.0% | |
! | TATGCATTTTGCCTTGCCAA+CGG | - | chr1_4:61139932-61139951 | None:intergenic | 40.0% |
! | TCTAAAGCAGAAACCAGAAC+AGG | + | chr1_4:61138180-61138199 | Msa0175250:CDS | 40.0% |
! | GCCTCAAAATATGTGTCGAT+AGG | - | chr1_4:61138325-61138344 | None:intergenic | 40.0% |
ATTGTCTTGGGAGATGAATC+TGG | + | chr1_4:61138358-61138377 | Msa0175250:intron | 40.0% | |
TATATATCCAAGCAAGCTGG+TGG | + | chr1_4:61138406-61138425 | Msa0175250:intron | 40.0% | |
ATATATCCAAGCAAGCTGGT+GGG | + | chr1_4:61138407-61138426 | Msa0175250:intron | 40.0% | |
ATCACTAAAGTACGGTGAAG+TGG | + | chr1_4:61138492-61138511 | Msa0175250:intron | 40.0% | |
TCACTAAAGTACGGTGAAGT+GGG | + | chr1_4:61138493-61138512 | Msa0175250:intron | 40.0% | |
AGTCCAACAAATACACCCAA+AGG | - | chr1_4:61138703-61138722 | None:intergenic | 40.0% | |
!!! | ACAGGCAAACCGTCATTTTT+GGG | + | chr1_4:61138731-61138750 | Msa0175250:intron | 40.0% |
CAATGTTGCCCCAAAAATGA+CGG | - | chr1_4:61138743-61138762 | None:intergenic | 40.0% | |
!! | ACTTTTCTGAAAGAAGTGGG+TGG | + | chr1_4:61138805-61138824 | Msa0175250:intron | 40.0% |
AACAGATCAAGATGCAGCAA+TGG | + | chr1_4:61138849-61138868 | Msa0175250:intron | 40.0% | |
! | CATTTCATGGATTGTGCACT+TGG | + | chr1_4:61138902-61138921 | Msa0175250:intron | 40.0% |
AAAGAGTTCGCGATTCCATT+TGG | + | chr1_4:61138969-61138988 | Msa0175250:intron | 40.0% | |
AGCATGCATAGATCTAGATG+AGG | + | chr1_4:61138999-61139018 | Msa0175250:intron | 40.0% | |
ATGCATAGATCTAGATGAGG+AGG | + | chr1_4:61139002-61139021 | Msa0175250:intron | 40.0% | |
GCATAAAAGGAGGTGAAAGA+AGG | + | chr1_4:61139427-61139446 | Msa0175250:CDS | 40.0% | |
TGCAAAGGAGAAGATGGTAA+TGG | + | chr1_4:61139477-61139496 | Msa0175250:intron | 40.0% | |
GCAAAGGAGAAGATGGTAAT+GGG | + | chr1_4:61139478-61139497 | Msa0175250:intron | 40.0% | |
!! | GATGGTAATGGGAAATCCTA+TGG | + | chr1_4:61139489-61139508 | Msa0175250:intron | 40.0% |
GAAGTAATCAAGGTTGGAGT+GGG | + | chr1_4:61139656-61139675 | Msa0175250:intron | 40.0% | |
AAAAAGCCCATTTCACGAAG+CGG | + | chr1_4:61139698-61139717 | Msa0175250:intron | 40.0% | |
ATTGTACCGCTTCGTGAAAT+GGG | - | chr1_4:61139707-61139726 | None:intergenic | 40.0% | |
TATCTGGATGGAGAATCAAG+TGG | + | chr1_4:61139850-61139869 | Msa0175250:CDS | 40.0% | |
! | TATGCATTTTGCCTTGCCAA+CGG | - | chr1_4:61139932-61139951 | None:intergenic | 40.0% |
TGACAAAAGACGTCAACCGA+CGG | + | chr1_4:61138152-61138171 | Msa0175250:CDS | 45.0% | |
AGCTCAACATAACCACCTTC+TGG | + | chr1_4:61138269-61138288 | Msa0175250:intron | 45.0% | |
TATATCCAAGCAAGCTGGTG+GGG | + | chr1_4:61138408-61138427 | Msa0175250:intron | 45.0% | |
CGACCTTTGGGTGTATTTGT+TGG | + | chr1_4:61138697-61138716 | Msa0175250:intron | 45.0% | |
!! | CACAGGCAAACCGTCATTTT+TGG | + | chr1_4:61138730-61138749 | Msa0175250:intron | 45.0% |
!!! | CAGGCAAACCGTCATTTTTG+GGG | + | chr1_4:61138732-61138751 | Msa0175250:intron | 45.0% |
GTTCGAAAAACATTCACGGC+AGG | + | chr1_4:61139135-61139154 | Msa0175250:CDS | 45.0% | |
AACGATGGACAAGAGATGCA+AGG | + | chr1_4:61139629-61139648 | Msa0175250:intron | 45.0% | |
GGAAGTAATCAAGGTTGGAG+TGG | + | chr1_4:61139655-61139674 | Msa0175250:intron | 45.0% | |
!! | GCTTCGTGAAATGGGCTTTT+TGG | - | chr1_4:61139699-61139718 | None:intergenic | 45.0% |
CATTGTACCGCTTCGTGAAA+TGG | - | chr1_4:61139708-61139727 | None:intergenic | 45.0% | |
GGATGGAGAATCAAGTGGAA+TGG | + | chr1_4:61139855-61139874 | Msa0175250:CDS | 45.0% | |
GACAACAACATAGACACCGT+TGG | + | chr1_4:61139913-61139932 | Msa0175250:CDS | 45.0% | |
TGACAAAAGACGTCAACCGA+CGG | + | chr1_4:61138152-61138171 | Msa0175250:CDS | 45.0% | |
AGCTCAACATAACCACCTTC+TGG | + | chr1_4:61138269-61138288 | Msa0175250:intron | 45.0% | |
TATATCCAAGCAAGCTGGTG+GGG | + | chr1_4:61138408-61138427 | Msa0175250:intron | 45.0% | |
CGACCTTTGGGTGTATTTGT+TGG | + | chr1_4:61138697-61138716 | Msa0175250:intron | 45.0% | |
!! | CACAGGCAAACCGTCATTTT+TGG | + | chr1_4:61138730-61138749 | Msa0175250:intron | 45.0% |
!!! | CAGGCAAACCGTCATTTTTG+GGG | + | chr1_4:61138732-61138751 | Msa0175250:intron | 45.0% |
GTTCGAAAAACATTCACGGC+AGG | + | chr1_4:61139135-61139154 | Msa0175250:CDS | 45.0% | |
AACGATGGACAAGAGATGCA+AGG | + | chr1_4:61139629-61139648 | Msa0175250:intron | 45.0% | |
GGAAGTAATCAAGGTTGGAG+TGG | + | chr1_4:61139655-61139674 | Msa0175250:intron | 45.0% | |
!! | GCTTCGTGAAATGGGCTTTT+TGG | - | chr1_4:61139699-61139718 | None:intergenic | 45.0% |
CATTGTACCGCTTCGTGAAA+TGG | - | chr1_4:61139708-61139727 | None:intergenic | 45.0% | |
GGATGGAGAATCAAGTGGAA+TGG | + | chr1_4:61139855-61139874 | Msa0175250:CDS | 45.0% | |
GACAACAACATAGACACCGT+TGG | + | chr1_4:61139913-61139932 | Msa0175250:CDS | 45.0% | |
CATACTCAGGTGGAACCAGA+AGG | - | chr1_4:61138287-61138306 | None:intergenic | 50.0% | |
ATGGACAAGAGATGCAAGGC+TGG | + | chr1_4:61139633-61139652 | Msa0175250:intron | 50.0% | |
TGGACAAGAGATGCAAGGCT+GGG | + | chr1_4:61139634-61139653 | Msa0175250:intron | 50.0% | |
GCAAGGCTGGGAAGTAATCA+AGG | + | chr1_4:61139646-61139665 | Msa0175250:intron | 50.0% | |
GGCTGGGAAGTAATCAAGGT+TGG | + | chr1_4:61139650-61139669 | Msa0175250:intron | 50.0% | |
GTAATCAAGGTTGGAGTGGG+AGG | + | chr1_4:61139659-61139678 | Msa0175250:intron | 50.0% | |
CAACATAGACACCGTTGGCA+AGG | + | chr1_4:61139918-61139937 | Msa0175250:CDS | 50.0% | |
CATACTCAGGTGGAACCAGA+AGG | - | chr1_4:61138287-61138306 | None:intergenic | 50.0% | |
ATGGACAAGAGATGCAAGGC+TGG | + | chr1_4:61139633-61139652 | Msa0175250:intron | 50.0% | |
TGGACAAGAGATGCAAGGCT+GGG | + | chr1_4:61139634-61139653 | Msa0175250:intron | 50.0% | |
GCAAGGCTGGGAAGTAATCA+AGG | + | chr1_4:61139646-61139665 | Msa0175250:intron | 50.0% | |
GGCTGGGAAGTAATCAAGGT+TGG | + | chr1_4:61139650-61139669 | Msa0175250:intron | 50.0% | |
GTAATCAAGGTTGGAGTGGG+AGG | + | chr1_4:61139659-61139678 | Msa0175250:intron | 50.0% | |
CAACATAGACACCGTTGGCA+AGG | + | chr1_4:61139918-61139937 | Msa0175250:CDS | 50.0% | |
CAAAAGACGTCAACCGACGG+CGG | + | chr1_4:61138155-61138174 | Msa0175250:CDS | 55.0% | |
! | TCTGCTTTAGACTCCGCCGT+CGG | - | chr1_4:61138171-61138190 | None:intergenic | 55.0% |
AACAGGATGCACAGCGCGTA+TGG | + | chr1_4:61138197-61138216 | Msa0175250:CDS | 55.0% | |
ACTCAGGTGGAACCAGAAGG+TGG | - | chr1_4:61138284-61138303 | None:intergenic | 55.0% | |
CAAAAGACGTCAACCGACGG+CGG | + | chr1_4:61138155-61138174 | Msa0175250:CDS | 55.0% | |
! | TCTGCTTTAGACTCCGCCGT+CGG | - | chr1_4:61138171-61138190 | None:intergenic | 55.0% |
AACAGGATGCACAGCGCGTA+TGG | + | chr1_4:61138197-61138216 | Msa0175250:CDS | 55.0% | |
ACTCAGGTGGAACCAGAAGG+TGG | - | chr1_4:61138284-61138303 | None:intergenic | 55.0% | |
ACGCGCTGTGCATCCTGTTC+TGG | - | chr1_4:61138196-61138215 | None:intergenic | 60.0% | |
! | CTCTACCCCACCAGCTTGCT+TGG | - | chr1_4:61138416-61138435 | None:intergenic | 60.0% |
GCTGGTGGGGTAGAGACTGT+CGG | + | chr1_4:61138421-61138440 | Msa0175250:intron | 60.0% | |
ACGCGCTGTGCATCCTGTTC+TGG | - | chr1_4:61138196-61138215 | None:intergenic | 60.0% | |
! | CTCTACCCCACCAGCTTGCT+TGG | - | chr1_4:61138416-61138435 | None:intergenic | 60.0% |
GCTGGTGGGGTAGAGACTGT+CGG | + | chr1_4:61138421-61138440 | Msa0175250:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 61138045 | 61139972 | 61138045 | ID=Msa0175250;Name=Msa0175250 |
chr1_4 | mRNA | 61138045 | 61139972 | 61138045 | ID=Msa0175250-mRNA-1;Parent=Msa0175250;Name=Msa0175250-mRNA-1;_AED=0.31;_eAED=0.43;_QI=0|0|0|1|0.25|0|5|0|229 |
chr1_4 | exon | 61138045 | 61138254 | 61138045 | ID=Msa0175250-mRNA-1:exon:19476;Parent=Msa0175250-mRNA-1 |
chr1_4 | exon | 61139082 | 61139088 | 61139082 | ID=Msa0175250-mRNA-1:exon:19477;Parent=Msa0175250-mRNA-1 |
chr1_4 | exon | 61139114 | 61139156 | 61139114 | ID=Msa0175250-mRNA-1:exon:19478;Parent=Msa0175250-mRNA-1 |
chr1_4 | exon | 61139257 | 61139452 | 61139257 | ID=Msa0175250-mRNA-1:exon:19479;Parent=Msa0175250-mRNA-1 |
chr1_4 | exon | 61139742 | 61139972 | 61139742 | ID=Msa0175250-mRNA-1:exon:19480;Parent=Msa0175250-mRNA-1 |
chr1_4 | CDS | 61138045 | 61138254 | 61138045 | ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1 |
chr1_4 | CDS | 61139082 | 61139088 | 61139082 | ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1 |
chr1_4 | CDS | 61139114 | 61139156 | 61139114 | ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1 |
chr1_4 | CDS | 61139257 | 61139452 | 61139257 | ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1 |
chr1_4 | CDS | 61139742 | 61139972 | 61139742 | ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1 |
Gene Sequence |
Protein sequence |