AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175250 MtrunA17_Chr3g0082121 76.056 71 17 0 1 71 64 134 3.62e-29 114
Msa0175250 MtrunA17_Chr3g0082121 52.326 86 33 2 140 223 614 693 1.65e-19 86.7
Msa0175250 MtrunA17_Chr3g0082121 72.131 61 17 0 86 146 458 518 2.25e-13 68.9
Msa0175250 MtrunA17_Chr5g0401121 67.606 71 23 0 1 71 77 147 6.34e-24 94.0
Msa0175250 MtrunA17_Chr6g0458391 42.373 59 34 0 2 60 247 305 4.38e-12 65.1
Msa0175250 MtrunA17_Chr1g0203721 39.130 69 41 1 3 71 86 153 4.66e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 27 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAGATACTTGCATAAA+AGG 0.217633 1_4:+61139414 Msa0175250:CDS
TTCATCATTCGCAATTGATA+TGG 0.254192 1_4:-61139887 None:intergenic
ACGCGCTGTGCATCCTGTTC+TGG 0.282615 1_4:-61138193 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.287007 1_4:+61138057 Msa0175250:CDS
AATGATTATAGTAAAAGAAT+TGG 0.319753 1_4:+61138033 None:intergenic
ATGAGATTCTGAAGCTCTAT+TGG 0.322184 1_4:-61139755 None:intergenic
TATAGTAAAAGAATTGGATT+TGG 0.342872 1_4:+61138039 None:intergenic
GGAAATAAAAGCAGAATAGA+TGG 0.381196 1_4:+61138078 Msa0175250:CDS
GTTGGACTCTTCATAAACTT+TGG 0.396971 1_4:-61139797 None:intergenic
TCGAAAGATAGGGAAATATA+AGG 0.398025 1_4:+61138233 Msa0175250:CDS
ATTTGGAGTGTAAACATTTG+CGG 0.445050 1_4:-61139358 None:intergenic
AAAGGGATGTCAATGCTAAA+CGG 0.487954 1_4:+61139253 Msa0175250:intron
AACAGGATGCACAGCGCGTA+TGG 0.489143 1_4:+61138197 Msa0175250:CDS
GGCAAAATGCATAAAGATGA+AGG 0.490221 1_4:+61139939 Msa0175250:CDS
GCATAAAAGGAGGTGAAAGA+AGG 0.500971 1_4:+61139427 Msa0175250:CDS
GCCTAAATTGAAAATGAAGA+AGG 0.516431 1_4:+61139317 Msa0175250:CDS
TCTAAAGCAGAAACCAGAAC+AGG 0.540723 1_4:+61138180 Msa0175250:CDS
CAACATAGACACCGTTGGCA+AGG 0.578457 1_4:+61139918 Msa0175250:CDS
GGATGGAGAATCAAGTGGAA+TGG 0.591122 1_4:+61139855 Msa0175250:CDS
TCTGCTTTAGACTCCGCCGT+CGG 0.605472 1_4:-61138168 None:intergenic
CAAGATACTTGCATAAAAGG+AGG 0.623387 1_4:+61139417 Msa0175250:CDS
AAGATTCACATGCTTCAAAG+AGG 0.641966 1_4:+61138116 Msa0175250:CDS
GACAACAACATAGACACCGT+TGG 0.650357 1_4:+61139913 Msa0175250:CDS
AGATTCACATGCTTCAAAGA+GGG 0.653445 1_4:+61138117 Msa0175250:CDS
TGACAAAAGACGTCAACCGA+CGG 0.667263 1_4:+61138152 Msa0175250:CDS
TATCTGGATGGAGAATCAAG+TGG 0.685001 1_4:+61139850 Msa0175250:CDS
CAAAAGACGTCAACCGACGG+CGG 0.706901 1_4:+61138155 Msa0175250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTTTATGATTTTCAAA+TGG + chr1_4:61138558-61138577 Msa0175250:intron 15.0%
!!! AGCTAATAACAAATATATTT+TGG + chr1_4:61138590-61138609 Msa0175250:intron 15.0%
!!! GCTAATAACAAATATATTTT+GGG + chr1_4:61138591-61138610 Msa0175250:intron 15.0%
!!! TTTTTAAATTGAAGGAAAAA+TGG + chr1_4:61139100-61139119 Msa0175250:intron 15.0%
!!! TTTTAAATTGAAGGAAAAAT+GGG + chr1_4:61139101-61139120 Msa0175250:intron 15.0%
!!! AATTTTTTACTCACTTTAAA+AGG + chr1_4:61139235-61139254 Msa0175250:intron 15.0%
!!! ATTTTTTACTCACTTTAAAA+GGG + chr1_4:61139236-61139255 Msa0175250:intron 15.0%
!!! ATTCTTTTATGATTTTCAAA+TGG + chr1_4:61138558-61138577 Msa0175250:intron 15.0%
!!! AGCTAATAACAAATATATTT+TGG + chr1_4:61138590-61138609 Msa0175250:intron 15.0%
!!! GCTAATAACAAATATATTTT+GGG + chr1_4:61138591-61138610 Msa0175250:intron 15.0%
!!! TTTTTAAATTGAAGGAAAAA+TGG + chr1_4:61139100-61139119 Msa0175250:intron 15.0%
!!! TTTTAAATTGAAGGAAAAAT+GGG + chr1_4:61139101-61139120 Msa0175250:intron 15.0%
!!! AATTTTTTACTCACTTTAAA+AGG + chr1_4:61139235-61139254 Msa0175250:intron 15.0%
!!! ATTTTTTACTCACTTTAAAA+GGG + chr1_4:61139236-61139255 Msa0175250:intron 15.0%
!! TGAAAATCATAAAAGAATGA+TGG - chr1_4:61138556-61138575 None:intergenic 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr1_4:61138594-61138613 Msa0175250:intron 20.0%
!! ATTAATGATTATGGATACTT+TGG + chr1_4:61138628-61138647 Msa0175250:intron 20.0%
!!! AAAGTGAATTTTTGAATGAA+TGG + chr1_4:61139025-61139044 Msa0175250:intron 20.0%
!!! GCATTCAATTTTTAAATTGA+AGG + chr1_4:61139092-61139111 Msa0175250:intron 20.0%
!! AATTTATATCTGACTTCAAA+TGG - chr1_4:61139209-61139228 None:intergenic 20.0%
!!! TTTGAAGTCAGATATAAATT+TGG + chr1_4:61139209-61139228 Msa0175250:intron 20.0%
!! TGAAATTCCTCAAAAAAATT+TGG - chr1_4:61139378-61139397 None:intergenic 20.0%
!!! CATATCATTAACTATTTTGT+TGG - chr1_4:61139818-61139837 None:intergenic 20.0%
!! TGAAAATCATAAAAGAATGA+TGG - chr1_4:61138556-61138575 None:intergenic 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr1_4:61138594-61138613 Msa0175250:intron 20.0%
!! ATTAATGATTATGGATACTT+TGG + chr1_4:61138628-61138647 Msa0175250:intron 20.0%
!!! AAAGTGAATTTTTGAATGAA+TGG + chr1_4:61139025-61139044 Msa0175250:intron 20.0%
!!! GCATTCAATTTTTAAATTGA+AGG + chr1_4:61139092-61139111 Msa0175250:intron 20.0%
!! AATTTATATCTGACTTCAAA+TGG - chr1_4:61139209-61139228 None:intergenic 20.0%
!!! TTTGAAGTCAGATATAAATT+TGG + chr1_4:61139209-61139228 Msa0175250:intron 20.0%
!! TGAAATTCCTCAAAAAAATT+TGG - chr1_4:61139378-61139397 None:intergenic 20.0%
!!! CATATCATTAACTATTTTGT+TGG - chr1_4:61139818-61139837 None:intergenic 20.0%
!! ATTTTACTTGATCGAAAGAT+AGG + chr1_4:61138222-61138241 Msa0175250:CDS 25.0%
!! TTTTACTTGATCGAAAGATA+GGG + chr1_4:61138223-61138242 Msa0175250:CDS 25.0%
! ATATATTGATGCAATTCTCT+TGG - chr1_4:61138391-61138410 None:intergenic 25.0%
!!! TGGTTTTAAGCAAATTCTTA+AGG - chr1_4:61138462-61138481 None:intergenic 25.0%
!! AGAATTTGCTTAAAACCAAA+AGG + chr1_4:61138464-61138483 Msa0175250:intron 25.0%
!! TTGTTTGAAATATGTCATCA+AGG - chr1_4:61138521-61138540 None:intergenic 25.0%
!!! ATAATGTTTTGAAAGATTCG+TGG + chr1_4:61139067-61139086 Msa0175250:intron 25.0%
! TTATGTTCGAAAAACATTCA+CGG + chr1_4:61139131-61139150 Msa0175250:CDS 25.0%
!!! TTACACTCCAAATTTTTTTG+AGG + chr1_4:61139368-61139387 Msa0175250:CDS 25.0%
!!! TTTTTTTGAGGAATTTCAAG+AGG + chr1_4:61139380-61139399 Msa0175250:CDS 25.0%
! TATCAAGATACTTGCATAAA+AGG + chr1_4:61139414-61139433 Msa0175250:CDS 25.0%
!! CACAAATTATGATAATGCAA+AGG + chr1_4:61139462-61139481 Msa0175250:intron 25.0%
! TATGTTGTCCAAAAAATATC+TGG + chr1_4:61139834-61139853 Msa0175250:CDS 25.0%
!! ATTTTACTTGATCGAAAGAT+AGG + chr1_4:61138222-61138241 Msa0175250:CDS 25.0%
!! TTTTACTTGATCGAAAGATA+GGG + chr1_4:61138223-61138242 Msa0175250:CDS 25.0%
! ATATATTGATGCAATTCTCT+TGG - chr1_4:61138391-61138410 None:intergenic 25.0%
!!! TGGTTTTAAGCAAATTCTTA+AGG - chr1_4:61138462-61138481 None:intergenic 25.0%
!! AGAATTTGCTTAAAACCAAA+AGG + chr1_4:61138464-61138483 Msa0175250:intron 25.0%
!! TTGTTTGAAATATGTCATCA+AGG - chr1_4:61138521-61138540 None:intergenic 25.0%
!!! ATAATGTTTTGAAAGATTCG+TGG + chr1_4:61139067-61139086 Msa0175250:intron 25.0%
! TTATGTTCGAAAAACATTCA+CGG + chr1_4:61139131-61139150 Msa0175250:CDS 25.0%
!!! TTACACTCCAAATTTTTTTG+AGG + chr1_4:61139368-61139387 Msa0175250:CDS 25.0%
!!! TTTTTTTGAGGAATTTCAAG+AGG + chr1_4:61139380-61139399 Msa0175250:CDS 25.0%
! TATCAAGATACTTGCATAAA+AGG + chr1_4:61139414-61139433 Msa0175250:CDS 25.0%
!! CACAAATTATGATAATGCAA+AGG + chr1_4:61139462-61139481 Msa0175250:intron 25.0%
! TATGTTGTCCAAAAAATATC+TGG + chr1_4:61139834-61139853 Msa0175250:CDS 25.0%
GGAAATAAAAGCAGAATAGA+TGG + chr1_4:61138078-61138097 Msa0175250:CDS 30.0%
TCGAAAGATAGGGAAATATA+AGG + chr1_4:61138233-61138252 Msa0175250:CDS 30.0%
AGAATCATATGAACATACTC+AGG - chr1_4:61138300-61138319 None:intergenic 30.0%
TAAGCAAATTCTTAAGGTCT+TGG - chr1_4:61138456-61138475 None:intergenic 30.0%
GCACAGATGATTAATGATTA+TGG + chr1_4:61138619-61138638 Msa0175250:intron 30.0%
! ATCCTTATTTGTCTTGTAAG+TGG - chr1_4:61138674-61138693 None:intergenic 30.0%
AAATAAGGATTATCGACCTT+TGG + chr1_4:61138684-61138703 Msa0175250:intron 30.0%
AATAAGGATTATCGACCTTT+GGG + chr1_4:61138685-61138704 Msa0175250:intron 30.0%
TTGTTGGACTTAATAATCAC+AGG + chr1_4:61138713-61138732 Msa0175250:intron 30.0%
! AAACAATTCGTTCTTTTCAG+TGG + chr1_4:61138773-61138792 Msa0175250:intron 30.0%
!! TGAAACTTTTCTGAAAGAAG+TGG + chr1_4:61138801-61138820 Msa0175250:intron 30.0%
!! GAAACTTTTCTGAAAGAAGT+GGG + chr1_4:61138802-61138821 Msa0175250:intron 30.0%
! TGATCTGTTAGAATGGTTTT+AGG - chr1_4:61138838-61138857 None:intergenic 30.0%
GTTATGCCAAAAACATTTCA+TGG + chr1_4:61138889-61138908 Msa0175250:intron 30.0%
! CACAATCCATGAAATGTTTT+TGG - chr1_4:61138898-61138917 None:intergenic 30.0%
ATATAAGACAGAATGCTCTT+AGG + chr1_4:61138926-61138945 Msa0175250:intron 30.0%
GCCTAAATTGAAAATGAAGA+AGG + chr1_4:61139317-61139336 Msa0175250:CDS 30.0%
! GCCTTCTTCATTTTCAATTT+AGG - chr1_4:61139321-61139340 None:intergenic 30.0%
! ATTTGGAGTGTAAACATTTG+CGG - chr1_4:61139361-61139380 None:intergenic 30.0%
! CAAGAAACTTTTTGTTCCAT+AGG - chr1_4:61139508-61139527 None:intergenic 30.0%
!! TCGTTTTAGTATGTAGTGTT+CGG - chr1_4:61139614-61139633 None:intergenic 30.0%
AACACTACATACTAAAACGA+TGG + chr1_4:61139614-61139633 Msa0175250:intron 30.0%
TTGTCCAAAAAATATCTGGA+TGG + chr1_4:61139838-61139857 Msa0175250:CDS 30.0%
!!! TTCTCCATCCAGATATTTTT+TGG - chr1_4:61139845-61139864 None:intergenic 30.0%
TTCATCATTCGCAATTGATA+TGG - chr1_4:61139890-61139909 None:intergenic 30.0%
GGAAATAAAAGCAGAATAGA+TGG + chr1_4:61138078-61138097 Msa0175250:CDS 30.0%
TCGAAAGATAGGGAAATATA+AGG + chr1_4:61138233-61138252 Msa0175250:CDS 30.0%
AGAATCATATGAACATACTC+AGG - chr1_4:61138300-61138319 None:intergenic 30.0%
TAAGCAAATTCTTAAGGTCT+TGG - chr1_4:61138456-61138475 None:intergenic 30.0%
GCACAGATGATTAATGATTA+TGG + chr1_4:61138619-61138638 Msa0175250:intron 30.0%
! ATCCTTATTTGTCTTGTAAG+TGG - chr1_4:61138674-61138693 None:intergenic 30.0%
AAATAAGGATTATCGACCTT+TGG + chr1_4:61138684-61138703 Msa0175250:intron 30.0%
AATAAGGATTATCGACCTTT+GGG + chr1_4:61138685-61138704 Msa0175250:intron 30.0%
TTGTTGGACTTAATAATCAC+AGG + chr1_4:61138713-61138732 Msa0175250:intron 30.0%
! AAACAATTCGTTCTTTTCAG+TGG + chr1_4:61138773-61138792 Msa0175250:intron 30.0%
!! TGAAACTTTTCTGAAAGAAG+TGG + chr1_4:61138801-61138820 Msa0175250:intron 30.0%
!! GAAACTTTTCTGAAAGAAGT+GGG + chr1_4:61138802-61138821 Msa0175250:intron 30.0%
! TGATCTGTTAGAATGGTTTT+AGG - chr1_4:61138838-61138857 None:intergenic 30.0%
GTTATGCCAAAAACATTTCA+TGG + chr1_4:61138889-61138908 Msa0175250:intron 30.0%
! CACAATCCATGAAATGTTTT+TGG - chr1_4:61138898-61138917 None:intergenic 30.0%
ATATAAGACAGAATGCTCTT+AGG + chr1_4:61138926-61138945 Msa0175250:intron 30.0%
GCCTAAATTGAAAATGAAGA+AGG + chr1_4:61139317-61139336 Msa0175250:CDS 30.0%
! GCCTTCTTCATTTTCAATTT+AGG - chr1_4:61139321-61139340 None:intergenic 30.0%
! ATTTGGAGTGTAAACATTTG+CGG - chr1_4:61139361-61139380 None:intergenic 30.0%
! CAAGAAACTTTTTGTTCCAT+AGG - chr1_4:61139508-61139527 None:intergenic 30.0%
!! TCGTTTTAGTATGTAGTGTT+CGG - chr1_4:61139614-61139633 None:intergenic 30.0%
AACACTACATACTAAAACGA+TGG + chr1_4:61139614-61139633 Msa0175250:intron 30.0%
TTGTCCAAAAAATATCTGGA+TGG + chr1_4:61139838-61139857 Msa0175250:CDS 30.0%
!!! TTCTCCATCCAGATATTTTT+TGG - chr1_4:61139845-61139864 None:intergenic 30.0%
TTCATCATTCGCAATTGATA+TGG - chr1_4:61139890-61139909 None:intergenic 30.0%
TTTGGTATTCGTCGAGAATA+TGG + chr1_4:61138057-61138076 Msa0175250:CDS 35.0%
AAGATTCACATGCTTCAAAG+AGG + chr1_4:61138116-61138135 Msa0175250:CDS 35.0%
AGATTCACATGCTTCAAAGA+GGG + chr1_4:61138117-61138136 Msa0175250:CDS 35.0%
ATCATATGAACATACTCAGG+TGG - chr1_4:61138297-61138316 None:intergenic 35.0%
! TCCTATCGACACATATTTTG+AGG + chr1_4:61138321-61138340 Msa0175250:intron 35.0%
ACAAGCATCACAAATTGTCT+TGG + chr1_4:61138345-61138364 Msa0175250:intron 35.0%
CAAGCATCACAAATTGTCTT+GGG + chr1_4:61138346-61138365 Msa0175250:intron 35.0%
CAATATATATCCAAGCAAGC+TGG + chr1_4:61138403-61138422 Msa0175250:intron 35.0%
! CTTTAGTGATTGCTTCCTTT+TGG - chr1_4:61138482-61138501 None:intergenic 35.0%
AGGAAGCAATCACTAAAGTA+CGG + chr1_4:61138484-61138503 Msa0175250:intron 35.0%
CACCACTTACAAGACAAATA+AGG + chr1_4:61138669-61138688 Msa0175250:intron 35.0%
TGCATCTTGATCTGTTAGAA+TGG - chr1_4:61138845-61138864 None:intergenic 35.0%
! GCGAACTCTTTTGATATAGA+TGG - chr1_4:61138960-61138979 None:intergenic 35.0%
TGCATGCTTCAAAATCCAAA+TGG - chr1_4:61138987-61139006 None:intergenic 35.0%
ATTGAAGGAAAAATGGGCAT+AGG + chr1_4:61139107-61139126 Msa0175250:intron 35.0%
AAAGGGATGTCAATGCTAAA+CGG + chr1_4:61139253-61139272 Msa0175250:intron 35.0%
CAAGATACTTGCATAAAAGG+AGG + chr1_4:61139417-61139436 Msa0175250:CDS 35.0%
! TGATAATGCAAAGGAGAAGA+TGG + chr1_4:61139471-61139490 Msa0175250:intron 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr1_4:61139532-61139551 Msa0175250:intron 35.0%
!! CGTTTTAGTATGTAGTGTTC+GGG - chr1_4:61139613-61139632 None:intergenic 35.0%
TTGGTCAATTTAAGCAACTG+AGG - chr1_4:61139739-61139758 None:intergenic 35.0%
!! ATGAGATTCTGAAGCTCTAT+TGG - chr1_4:61139758-61139777 None:intergenic 35.0%
GTTGGACTCTTCATAAACTT+TGG - chr1_4:61139800-61139819 None:intergenic 35.0%
GGCAAAATGCATAAAGATGA+AGG + chr1_4:61139939-61139958 Msa0175250:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr1_4:61138057-61138076 Msa0175250:CDS 35.0%
AAGATTCACATGCTTCAAAG+AGG + chr1_4:61138116-61138135 Msa0175250:CDS 35.0%
AGATTCACATGCTTCAAAGA+GGG + chr1_4:61138117-61138136 Msa0175250:CDS 35.0%
ATCATATGAACATACTCAGG+TGG - chr1_4:61138297-61138316 None:intergenic 35.0%
! TCCTATCGACACATATTTTG+AGG + chr1_4:61138321-61138340 Msa0175250:intron 35.0%
ACAAGCATCACAAATTGTCT+TGG + chr1_4:61138345-61138364 Msa0175250:intron 35.0%
CAAGCATCACAAATTGTCTT+GGG + chr1_4:61138346-61138365 Msa0175250:intron 35.0%
CAATATATATCCAAGCAAGC+TGG + chr1_4:61138403-61138422 Msa0175250:intron 35.0%
! CTTTAGTGATTGCTTCCTTT+TGG - chr1_4:61138482-61138501 None:intergenic 35.0%
AGGAAGCAATCACTAAAGTA+CGG + chr1_4:61138484-61138503 Msa0175250:intron 35.0%
CACCACTTACAAGACAAATA+AGG + chr1_4:61138669-61138688 Msa0175250:intron 35.0%
TGCATCTTGATCTGTTAGAA+TGG - chr1_4:61138845-61138864 None:intergenic 35.0%
! GCGAACTCTTTTGATATAGA+TGG - chr1_4:61138960-61138979 None:intergenic 35.0%
TGCATGCTTCAAAATCCAAA+TGG - chr1_4:61138987-61139006 None:intergenic 35.0%
ATTGAAGGAAAAATGGGCAT+AGG + chr1_4:61139107-61139126 Msa0175250:intron 35.0%
AAAGGGATGTCAATGCTAAA+CGG + chr1_4:61139253-61139272 Msa0175250:intron 35.0%
CAAGATACTTGCATAAAAGG+AGG + chr1_4:61139417-61139436 Msa0175250:CDS 35.0%
! TGATAATGCAAAGGAGAAGA+TGG + chr1_4:61139471-61139490 Msa0175250:intron 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr1_4:61139532-61139551 Msa0175250:intron 35.0%
!! CGTTTTAGTATGTAGTGTTC+GGG - chr1_4:61139613-61139632 None:intergenic 35.0%
TTGGTCAATTTAAGCAACTG+AGG - chr1_4:61139739-61139758 None:intergenic 35.0%
!! ATGAGATTCTGAAGCTCTAT+TGG - chr1_4:61139758-61139777 None:intergenic 35.0%
GTTGGACTCTTCATAAACTT+TGG - chr1_4:61139800-61139819 None:intergenic 35.0%
GGCAAAATGCATAAAGATGA+AGG + chr1_4:61139939-61139958 Msa0175250:CDS 35.0%
! TCTAAAGCAGAAACCAGAAC+AGG + chr1_4:61138180-61138199 Msa0175250:CDS 40.0%
! GCCTCAAAATATGTGTCGAT+AGG - chr1_4:61138325-61138344 None:intergenic 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr1_4:61138358-61138377 Msa0175250:intron 40.0%
TATATATCCAAGCAAGCTGG+TGG + chr1_4:61138406-61138425 Msa0175250:intron 40.0%
ATATATCCAAGCAAGCTGGT+GGG + chr1_4:61138407-61138426 Msa0175250:intron 40.0%
ATCACTAAAGTACGGTGAAG+TGG + chr1_4:61138492-61138511 Msa0175250:intron 40.0%
TCACTAAAGTACGGTGAAGT+GGG + chr1_4:61138493-61138512 Msa0175250:intron 40.0%
AGTCCAACAAATACACCCAA+AGG - chr1_4:61138703-61138722 None:intergenic 40.0%
!!! ACAGGCAAACCGTCATTTTT+GGG + chr1_4:61138731-61138750 Msa0175250:intron 40.0%
CAATGTTGCCCCAAAAATGA+CGG - chr1_4:61138743-61138762 None:intergenic 40.0%
!! ACTTTTCTGAAAGAAGTGGG+TGG + chr1_4:61138805-61138824 Msa0175250:intron 40.0%
AACAGATCAAGATGCAGCAA+TGG + chr1_4:61138849-61138868 Msa0175250:intron 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr1_4:61138902-61138921 Msa0175250:intron 40.0%
AAAGAGTTCGCGATTCCATT+TGG + chr1_4:61138969-61138988 Msa0175250:intron 40.0%
AGCATGCATAGATCTAGATG+AGG + chr1_4:61138999-61139018 Msa0175250:intron 40.0%
ATGCATAGATCTAGATGAGG+AGG + chr1_4:61139002-61139021 Msa0175250:intron 40.0%
GCATAAAAGGAGGTGAAAGA+AGG + chr1_4:61139427-61139446 Msa0175250:CDS 40.0%
TGCAAAGGAGAAGATGGTAA+TGG + chr1_4:61139477-61139496 Msa0175250:intron 40.0%
GCAAAGGAGAAGATGGTAAT+GGG + chr1_4:61139478-61139497 Msa0175250:intron 40.0%
!! GATGGTAATGGGAAATCCTA+TGG + chr1_4:61139489-61139508 Msa0175250:intron 40.0%
GAAGTAATCAAGGTTGGAGT+GGG + chr1_4:61139656-61139675 Msa0175250:intron 40.0%
AAAAAGCCCATTTCACGAAG+CGG + chr1_4:61139698-61139717 Msa0175250:intron 40.0%
ATTGTACCGCTTCGTGAAAT+GGG - chr1_4:61139707-61139726 None:intergenic 40.0%
TATCTGGATGGAGAATCAAG+TGG + chr1_4:61139850-61139869 Msa0175250:CDS 40.0%
! TATGCATTTTGCCTTGCCAA+CGG - chr1_4:61139932-61139951 None:intergenic 40.0%
! TCTAAAGCAGAAACCAGAAC+AGG + chr1_4:61138180-61138199 Msa0175250:CDS 40.0%
! GCCTCAAAATATGTGTCGAT+AGG - chr1_4:61138325-61138344 None:intergenic 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr1_4:61138358-61138377 Msa0175250:intron 40.0%
TATATATCCAAGCAAGCTGG+TGG + chr1_4:61138406-61138425 Msa0175250:intron 40.0%
ATATATCCAAGCAAGCTGGT+GGG + chr1_4:61138407-61138426 Msa0175250:intron 40.0%
ATCACTAAAGTACGGTGAAG+TGG + chr1_4:61138492-61138511 Msa0175250:intron 40.0%
TCACTAAAGTACGGTGAAGT+GGG + chr1_4:61138493-61138512 Msa0175250:intron 40.0%
AGTCCAACAAATACACCCAA+AGG - chr1_4:61138703-61138722 None:intergenic 40.0%
!!! ACAGGCAAACCGTCATTTTT+GGG + chr1_4:61138731-61138750 Msa0175250:intron 40.0%
CAATGTTGCCCCAAAAATGA+CGG - chr1_4:61138743-61138762 None:intergenic 40.0%
!! ACTTTTCTGAAAGAAGTGGG+TGG + chr1_4:61138805-61138824 Msa0175250:intron 40.0%
AACAGATCAAGATGCAGCAA+TGG + chr1_4:61138849-61138868 Msa0175250:intron 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr1_4:61138902-61138921 Msa0175250:intron 40.0%
AAAGAGTTCGCGATTCCATT+TGG + chr1_4:61138969-61138988 Msa0175250:intron 40.0%
AGCATGCATAGATCTAGATG+AGG + chr1_4:61138999-61139018 Msa0175250:intron 40.0%
ATGCATAGATCTAGATGAGG+AGG + chr1_4:61139002-61139021 Msa0175250:intron 40.0%
GCATAAAAGGAGGTGAAAGA+AGG + chr1_4:61139427-61139446 Msa0175250:CDS 40.0%
TGCAAAGGAGAAGATGGTAA+TGG + chr1_4:61139477-61139496 Msa0175250:intron 40.0%
GCAAAGGAGAAGATGGTAAT+GGG + chr1_4:61139478-61139497 Msa0175250:intron 40.0%
!! GATGGTAATGGGAAATCCTA+TGG + chr1_4:61139489-61139508 Msa0175250:intron 40.0%
GAAGTAATCAAGGTTGGAGT+GGG + chr1_4:61139656-61139675 Msa0175250:intron 40.0%
AAAAAGCCCATTTCACGAAG+CGG + chr1_4:61139698-61139717 Msa0175250:intron 40.0%
ATTGTACCGCTTCGTGAAAT+GGG - chr1_4:61139707-61139726 None:intergenic 40.0%
TATCTGGATGGAGAATCAAG+TGG + chr1_4:61139850-61139869 Msa0175250:CDS 40.0%
! TATGCATTTTGCCTTGCCAA+CGG - chr1_4:61139932-61139951 None:intergenic 40.0%
TGACAAAAGACGTCAACCGA+CGG + chr1_4:61138152-61138171 Msa0175250:CDS 45.0%
AGCTCAACATAACCACCTTC+TGG + chr1_4:61138269-61138288 Msa0175250:intron 45.0%
TATATCCAAGCAAGCTGGTG+GGG + chr1_4:61138408-61138427 Msa0175250:intron 45.0%
CGACCTTTGGGTGTATTTGT+TGG + chr1_4:61138697-61138716 Msa0175250:intron 45.0%
!! CACAGGCAAACCGTCATTTT+TGG + chr1_4:61138730-61138749 Msa0175250:intron 45.0%
!!! CAGGCAAACCGTCATTTTTG+GGG + chr1_4:61138732-61138751 Msa0175250:intron 45.0%
GTTCGAAAAACATTCACGGC+AGG + chr1_4:61139135-61139154 Msa0175250:CDS 45.0%
AACGATGGACAAGAGATGCA+AGG + chr1_4:61139629-61139648 Msa0175250:intron 45.0%
GGAAGTAATCAAGGTTGGAG+TGG + chr1_4:61139655-61139674 Msa0175250:intron 45.0%
!! GCTTCGTGAAATGGGCTTTT+TGG - chr1_4:61139699-61139718 None:intergenic 45.0%
CATTGTACCGCTTCGTGAAA+TGG - chr1_4:61139708-61139727 None:intergenic 45.0%
GGATGGAGAATCAAGTGGAA+TGG + chr1_4:61139855-61139874 Msa0175250:CDS 45.0%
GACAACAACATAGACACCGT+TGG + chr1_4:61139913-61139932 Msa0175250:CDS 45.0%
TGACAAAAGACGTCAACCGA+CGG + chr1_4:61138152-61138171 Msa0175250:CDS 45.0%
AGCTCAACATAACCACCTTC+TGG + chr1_4:61138269-61138288 Msa0175250:intron 45.0%
TATATCCAAGCAAGCTGGTG+GGG + chr1_4:61138408-61138427 Msa0175250:intron 45.0%
CGACCTTTGGGTGTATTTGT+TGG + chr1_4:61138697-61138716 Msa0175250:intron 45.0%
!! CACAGGCAAACCGTCATTTT+TGG + chr1_4:61138730-61138749 Msa0175250:intron 45.0%
!!! CAGGCAAACCGTCATTTTTG+GGG + chr1_4:61138732-61138751 Msa0175250:intron 45.0%
GTTCGAAAAACATTCACGGC+AGG + chr1_4:61139135-61139154 Msa0175250:CDS 45.0%
AACGATGGACAAGAGATGCA+AGG + chr1_4:61139629-61139648 Msa0175250:intron 45.0%
GGAAGTAATCAAGGTTGGAG+TGG + chr1_4:61139655-61139674 Msa0175250:intron 45.0%
!! GCTTCGTGAAATGGGCTTTT+TGG - chr1_4:61139699-61139718 None:intergenic 45.0%
CATTGTACCGCTTCGTGAAA+TGG - chr1_4:61139708-61139727 None:intergenic 45.0%
GGATGGAGAATCAAGTGGAA+TGG + chr1_4:61139855-61139874 Msa0175250:CDS 45.0%
GACAACAACATAGACACCGT+TGG + chr1_4:61139913-61139932 Msa0175250:CDS 45.0%
CATACTCAGGTGGAACCAGA+AGG - chr1_4:61138287-61138306 None:intergenic 50.0%
ATGGACAAGAGATGCAAGGC+TGG + chr1_4:61139633-61139652 Msa0175250:intron 50.0%
TGGACAAGAGATGCAAGGCT+GGG + chr1_4:61139634-61139653 Msa0175250:intron 50.0%
GCAAGGCTGGGAAGTAATCA+AGG + chr1_4:61139646-61139665 Msa0175250:intron 50.0%
GGCTGGGAAGTAATCAAGGT+TGG + chr1_4:61139650-61139669 Msa0175250:intron 50.0%
GTAATCAAGGTTGGAGTGGG+AGG + chr1_4:61139659-61139678 Msa0175250:intron 50.0%
CAACATAGACACCGTTGGCA+AGG + chr1_4:61139918-61139937 Msa0175250:CDS 50.0%
CATACTCAGGTGGAACCAGA+AGG - chr1_4:61138287-61138306 None:intergenic 50.0%
ATGGACAAGAGATGCAAGGC+TGG + chr1_4:61139633-61139652 Msa0175250:intron 50.0%
TGGACAAGAGATGCAAGGCT+GGG + chr1_4:61139634-61139653 Msa0175250:intron 50.0%
GCAAGGCTGGGAAGTAATCA+AGG + chr1_4:61139646-61139665 Msa0175250:intron 50.0%
GGCTGGGAAGTAATCAAGGT+TGG + chr1_4:61139650-61139669 Msa0175250:intron 50.0%
GTAATCAAGGTTGGAGTGGG+AGG + chr1_4:61139659-61139678 Msa0175250:intron 50.0%
CAACATAGACACCGTTGGCA+AGG + chr1_4:61139918-61139937 Msa0175250:CDS 50.0%
CAAAAGACGTCAACCGACGG+CGG + chr1_4:61138155-61138174 Msa0175250:CDS 55.0%
! TCTGCTTTAGACTCCGCCGT+CGG - chr1_4:61138171-61138190 None:intergenic 55.0%
AACAGGATGCACAGCGCGTA+TGG + chr1_4:61138197-61138216 Msa0175250:CDS 55.0%
ACTCAGGTGGAACCAGAAGG+TGG - chr1_4:61138284-61138303 None:intergenic 55.0%
CAAAAGACGTCAACCGACGG+CGG + chr1_4:61138155-61138174 Msa0175250:CDS 55.0%
! TCTGCTTTAGACTCCGCCGT+CGG - chr1_4:61138171-61138190 None:intergenic 55.0%
AACAGGATGCACAGCGCGTA+TGG + chr1_4:61138197-61138216 Msa0175250:CDS 55.0%
ACTCAGGTGGAACCAGAAGG+TGG - chr1_4:61138284-61138303 None:intergenic 55.0%
ACGCGCTGTGCATCCTGTTC+TGG - chr1_4:61138196-61138215 None:intergenic 60.0%
! CTCTACCCCACCAGCTTGCT+TGG - chr1_4:61138416-61138435 None:intergenic 60.0%
GCTGGTGGGGTAGAGACTGT+CGG + chr1_4:61138421-61138440 Msa0175250:intron 60.0%
ACGCGCTGTGCATCCTGTTC+TGG - chr1_4:61138196-61138215 None:intergenic 60.0%
! CTCTACCCCACCAGCTTGCT+TGG - chr1_4:61138416-61138435 None:intergenic 60.0%
GCTGGTGGGGTAGAGACTGT+CGG + chr1_4:61138421-61138440 Msa0175250:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61138045 61139972 61138045 ID=Msa0175250;Name=Msa0175250
chr1_4 mRNA 61138045 61139972 61138045 ID=Msa0175250-mRNA-1;Parent=Msa0175250;Name=Msa0175250-mRNA-1;_AED=0.31;_eAED=0.43;_QI=0|0|0|1|0.25|0|5|0|229
chr1_4 exon 61138045 61138254 61138045 ID=Msa0175250-mRNA-1:exon:19476;Parent=Msa0175250-mRNA-1
chr1_4 exon 61139082 61139088 61139082 ID=Msa0175250-mRNA-1:exon:19477;Parent=Msa0175250-mRNA-1
chr1_4 exon 61139114 61139156 61139114 ID=Msa0175250-mRNA-1:exon:19478;Parent=Msa0175250-mRNA-1
chr1_4 exon 61139257 61139452 61139257 ID=Msa0175250-mRNA-1:exon:19479;Parent=Msa0175250-mRNA-1
chr1_4 exon 61139742 61139972 61139742 ID=Msa0175250-mRNA-1:exon:19480;Parent=Msa0175250-mRNA-1
chr1_4 CDS 61138045 61138254 61138045 ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1
chr1_4 CDS 61139082 61139088 61139082 ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1
chr1_4 CDS 61139114 61139156 61139114 ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1
chr1_4 CDS 61139257 61139452 61139257 ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1
chr1_4 CDS 61139742 61139972 61139742 ID=Msa0175250-mRNA-1:cds;Parent=Msa0175250-mRNA-1
Gene Sequence

>Msa0175250

AAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAATAGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTGCGCAAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAAAGCAGAAACCAGAACAGGATGCACAGCGCGTATGGTTATTTTACTTGATCGAAAGATAGGGAAATATAAGATTCGTGGAAAAATGGGCATAGGCTTATGTTCGAAAAACATTCACGGCAGGGATGTCAATGCTAAACGGAACAATGAGTCAAAAGCAGAATATGATTCAAGACATAAGCTGCCTAAATTGAAAATGAAGAAGGCTCGCATGCTCTTACAAGCCGCAAATGTTTACACTCCAAATTTTTTTGAGGAATTTCAAGAGGAATATGAAGAATATCAAGATACTTGCATAAAAGGAGGTGAAAGAAGGTTTTTGCTTAAATTGACCAATAGAGCTTCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAACAAAATAGTTAATGATATGTTGTCCAAAAAATATCTGGATGGAGAATCAAGTGGAATGGTTCATGTATCCATATCAATTGCGAATGATGAAGTCGACAACAACATAGACACCGTTGGCAAGGCAAAATGCATAAAGATGAAGGATTGTCCACGT

Protein sequence

>Msa0175250

KRIGFGIRREYGNKSRIDGVLTSRRFTCFKEGAQVVDKRRQPTAESKAETRTGCTARMVILLDRKIGKYKIRGKMGIGLCSKNIHGRDVNAKRNNESKAEYDSRHKLPKLKMKKARMLLQAANVYTPNFFEEFQEEYEEYQDTCIKGGERRFLLKLTNRASESHETYTFLSKVYEESNKIVNDMLSKKYLDGESSGMVHVSISIANDEVDNNIDTVGKAKCIKMKDCPR