Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175400 | G7I2W4 | 72.840 | 162 | 15 | 2 | 1 | 150 | 1 | 145 | 2.74e-73 | 225 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0175400 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTTGGGTTTGAAAGCTT+TGG | 0.278312 | 1_4:-61349008 | None:intergenic |
| GAGTTGGGTTTGAAAGCTTT+GGG | 0.313526 | 1_4:-61349007 | None:intergenic |
| GCCGACCTCTCTACAAAATA+AGG | 0.317217 | 1_4:-61350712 | None:intergenic |
| ATAGTCTTCAAGGGTTCCTT+TGG | 0.332237 | 1_4:-61348919 | None:intergenic |
| TCAAACAACAAAATATTATC+TGG | 0.350768 | 1_4:-61350841 | None:intergenic |
| CACAAGATTGGCTTCTCATA+TGG | 0.363409 | 1_4:-61348870 | None:intergenic |
| TTTCAACAGAAACTAAAGTT+TGG | 0.373286 | 1_4:+61348838 | Msa0175400:CDS |
| ATACTTTGCTGAGCTATCTT+CGG | 0.400089 | 1_4:-61348945 | None:intergenic |
| GACTATGAGGCCGACACTAA+TGG | 0.401191 | 1_4:+61350738 | Msa0175400:CDS |
| TACTTTGCTGAGCTATCTTC+GGG | 0.431538 | 1_4:-61348944 | None:intergenic |
| CCAAGTAATGAGATCGGCCT+TGG | 0.442800 | 1_4:+61350883 | Msa0175400:CDS |
| CCACAGGCGTTACACAAGAT+TGG | 0.446240 | 1_4:-61348882 | None:intergenic |
| GAAACTAAAGTTTGGCGTAA+AGG | 0.450000 | 1_4:+61348846 | Msa0175400:CDS |
| TCTTCGGGAGATAGTCTTCA+AGG | 0.462167 | 1_4:-61348929 | None:intergenic |
| CCAAGGCCGATCTCATTACT+TGG | 0.469229 | 1_4:-61350883 | None:intergenic |
| CGCCTGTGGATTGCATTTCA+AGG | 0.472275 | 1_4:+61348896 | Msa0175400:CDS |
| GGCCTTGAAATGCAATCCAC+AGG | 0.512475 | 1_4:-61348898 | None:intergenic |
| GTCAGTGTCTCCATTAGTGT+CGG | 0.538511 | 1_4:-61350748 | None:intergenic |
| AAGCTTTCAAACCCAACTCC+AGG | 0.571736 | 1_4:+61349011 | Msa0175400:CDS |
| ATTAGTGTCGGCCTCATAGT+CGG | 0.574226 | 1_4:-61350736 | None:intergenic |
| AGCTCAGCAAAGTATGTCAT+CGG | 0.576312 | 1_4:+61348953 | Msa0175400:CDS |
| AGAGGTCGGCACCGACTATG+AGG | 0.586753 | 1_4:+61350725 | Msa0175400:CDS |
| AATGGAGACACTGACACCAA+TGG | 0.595378 | 1_4:+61350756 | Msa0175400:CDS |
| TTTATACCAAGTAATGAGAT+CGG | 0.595926 | 1_4:+61350877 | Msa0175400:CDS |
| CCAATCTTGTGTAACGCCTG+TGG | 0.600058 | 1_4:+61348882 | Msa0175400:CDS |
| CTTCGGGAGATAGTCTTCAA+GGG | 0.601274 | 1_4:-61348928 | None:intergenic |
| TCTTTAGAAGAGTGCAGCCA+AGG | 0.606342 | 1_4:-61350900 | None:intergenic |
| GGATTGCATTTCAAGGCCAA+AGG | 0.606742 | 1_4:+61348903 | Msa0175400:CDS |
| GGAGACACTGACACCAATGG+AGG | 0.696756 | 1_4:+61350759 | Msa0175400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAAAACTTTAG+CGG | - | chr1_4:61349174-61349193 | None:intergenic | 10.0% |
| !!! | ATATATTTTAAAAACTTTAG+CGG | - | chr1_4:61349174-61349193 | None:intergenic | 10.0% |
| !! | ATAGAATCATCTTTAAATTA+TGG | - | chr1_4:61349793-61349812 | None:intergenic | 15.0% |
| !!! | TTATAATATCATTAGCTTAA+AGG | - | chr1_4:61350004-61350023 | None:intergenic | 15.0% |
| !! | TTTAAGCTAATGATATTATA+AGG | + | chr1_4:61350003-61350022 | Msa0175400:intron | 15.0% |
| !! | TAATCATTTATTTGTATCAT+CGG | - | chr1_4:61350641-61350660 | None:intergenic | 15.0% |
| !! | TCATATACAATACATATTAA+TGG | - | chr1_4:61350665-61350684 | None:intergenic | 15.0% |
| !! | ATAGAATCATCTTTAAATTA+TGG | - | chr1_4:61349793-61349812 | None:intergenic | 15.0% |
| !!! | TTATAATATCATTAGCTTAA+AGG | - | chr1_4:61350004-61350023 | None:intergenic | 15.0% |
| !! | TTTAAGCTAATGATATTATA+AGG | + | chr1_4:61350003-61350022 | Msa0175400:intron | 15.0% |
| !! | TAATCATTTATTTGTATCAT+CGG | - | chr1_4:61350641-61350660 | None:intergenic | 15.0% |
| !! | TCATATACAATACATATTAA+TGG | - | chr1_4:61350665-61350684 | None:intergenic | 15.0% |
| !!! | CTTTAAATTTGGTGAAATAT+GGG | - | chr1_4:61349056-61349075 | None:intergenic | 20.0% |
| !!! | AATAACTTCAGCTTTAAATT+TGG | - | chr1_4:61349067-61349086 | None:intergenic | 20.0% |
| !! | GAAAAATGGATGATATAAAA+TGG | - | chr1_4:61349100-61349119 | None:intergenic | 20.0% |
| !! | ATGCATTATAAAAGGAAAAA+TGG | - | chr1_4:61349114-61349133 | None:intergenic | 20.0% |
| !! | ATCAATCAATGCATTATAAA+AGG | - | chr1_4:61349122-61349141 | None:intergenic | 20.0% |
| !! | CAACTCATATATAAATGTTA+GGG | - | chr1_4:61349344-61349363 | None:intergenic | 20.0% |
| !! | ACAACTCATATATAAATGTT+AGG | - | chr1_4:61349345-61349364 | None:intergenic | 20.0% |
| !!! | AACAAAAACTTTTCAATCTA+TGG | + | chr1_4:61350788-61350807 | Msa0175400:CDS | 20.0% |
| !!! | ACAAAAACTTTTCAATCTAT+GGG | + | chr1_4:61350789-61350808 | Msa0175400:CDS | 20.0% |
| !! | TCAAACAACAAAATATTATC+TGG | - | chr1_4:61350844-61350863 | None:intergenic | 20.0% |
| !!! | CTTTAAATTTGGTGAAATAT+GGG | - | chr1_4:61349056-61349075 | None:intergenic | 20.0% |
| !!! | AATAACTTCAGCTTTAAATT+TGG | - | chr1_4:61349067-61349086 | None:intergenic | 20.0% |
| !! | GAAAAATGGATGATATAAAA+TGG | - | chr1_4:61349100-61349119 | None:intergenic | 20.0% |
| !! | ATGCATTATAAAAGGAAAAA+TGG | - | chr1_4:61349114-61349133 | None:intergenic | 20.0% |
| !! | ATCAATCAATGCATTATAAA+AGG | - | chr1_4:61349122-61349141 | None:intergenic | 20.0% |
| !! | CAACTCATATATAAATGTTA+GGG | - | chr1_4:61349344-61349363 | None:intergenic | 20.0% |
| !! | ACAACTCATATATAAATGTT+AGG | - | chr1_4:61349345-61349364 | None:intergenic | 20.0% |
| !!! | AACAAAAACTTTTCAATCTA+TGG | + | chr1_4:61350788-61350807 | Msa0175400:CDS | 20.0% |
| !!! | ACAAAAACTTTTCAATCTAT+GGG | + | chr1_4:61350789-61350808 | Msa0175400:CDS | 20.0% |
| !! | TCAAACAACAAAATATTATC+TGG | - | chr1_4:61350844-61350863 | None:intergenic | 20.0% |
| ! | TTTCAACAGAAACTAAAGTT+TGG | + | chr1_4:61348838-61348857 | Msa0175400:CDS | 25.0% |
| !!! | CAGATATTTTTTCAATGTCA+AGG | - | chr1_4:61348980-61348999 | None:intergenic | 25.0% |
| ! | CTTGACATTGAAAAAATATC+TGG | + | chr1_4:61348978-61348997 | Msa0175400:CDS | 25.0% |
| !! | AATTTTTATTACCTGGAGTT+GGG | - | chr1_4:61349025-61349044 | None:intergenic | 25.0% |
| !! | GAATTGCAATTTTTATTACC+TGG | - | chr1_4:61349032-61349051 | None:intergenic | 25.0% |
| !! | GCTTTAAATTTGGTGAAATA+TGG | - | chr1_4:61349057-61349076 | None:intergenic | 25.0% |
| ! | AATGGATGATATAAAATGGA+GGG | - | chr1_4:61349096-61349115 | None:intergenic | 25.0% |
| ! | AAATGGATGATATAAAATGG+AGG | - | chr1_4:61349097-61349116 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGA+TGG | + | chr1_4:61349205-61349224 | Msa0175400:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGAT+GGG | + | chr1_4:61349206-61349225 | Msa0175400:intron | 25.0% |
| ! | CATTGTACGAATATTCTTAA+CGG | + | chr1_4:61349287-61349306 | Msa0175400:intron | 25.0% |
| ! | ATTGTACGAATATTCTTAAC+GGG | + | chr1_4:61349288-61349307 | Msa0175400:intron | 25.0% |
| !!! | ATTGATAGTGAAGCAAATTA+CGG | - | chr1_4:61349379-61349398 | None:intergenic | 25.0% |
| !!! | TTGTTCAAAAGTACTATTGT+TGG | + | chr1_4:61349610-61349629 | Msa0175400:intron | 25.0% |
| ! | TATTTGTCTAACTTGAAACA+TGG | - | chr1_4:61349870-61349889 | None:intergenic | 25.0% |
| ! | TCGTAATTTCTTTGATGTTA+TGG | + | chr1_4:61350132-61350151 | Msa0175400:intron | 25.0% |
| ! | ATAGTTTACATTTCCTTGTT+AGG | + | chr1_4:61350341-61350360 | Msa0175400:intron | 25.0% |
| ! | TTTATACCAAGTAATGAGAT+CGG | + | chr1_4:61350877-61350896 | Msa0175400:CDS | 25.0% |
| ! | TTTCAACAGAAACTAAAGTT+TGG | + | chr1_4:61348838-61348857 | Msa0175400:CDS | 25.0% |
| !!! | CAGATATTTTTTCAATGTCA+AGG | - | chr1_4:61348980-61348999 | None:intergenic | 25.0% |
| ! | CTTGACATTGAAAAAATATC+TGG | + | chr1_4:61348978-61348997 | Msa0175400:CDS | 25.0% |
| !! | AATTTTTATTACCTGGAGTT+GGG | - | chr1_4:61349025-61349044 | None:intergenic | 25.0% |
| !! | GAATTGCAATTTTTATTACC+TGG | - | chr1_4:61349032-61349051 | None:intergenic | 25.0% |
| !! | GCTTTAAATTTGGTGAAATA+TGG | - | chr1_4:61349057-61349076 | None:intergenic | 25.0% |
| ! | AATGGATGATATAAAATGGA+GGG | - | chr1_4:61349096-61349115 | None:intergenic | 25.0% |
| ! | AAATGGATGATATAAAATGG+AGG | - | chr1_4:61349097-61349116 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGA+TGG | + | chr1_4:61349205-61349224 | Msa0175400:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGAT+GGG | + | chr1_4:61349206-61349225 | Msa0175400:intron | 25.0% |
| ! | CATTGTACGAATATTCTTAA+CGG | + | chr1_4:61349287-61349306 | Msa0175400:intron | 25.0% |
| ! | ATTGTACGAATATTCTTAAC+GGG | + | chr1_4:61349288-61349307 | Msa0175400:intron | 25.0% |
| !!! | ATTGATAGTGAAGCAAATTA+CGG | - | chr1_4:61349379-61349398 | None:intergenic | 25.0% |
| !!! | TTGTTCAAAAGTACTATTGT+TGG | + | chr1_4:61349610-61349629 | Msa0175400:intron | 25.0% |
| ! | TATTTGTCTAACTTGAAACA+TGG | - | chr1_4:61349870-61349889 | None:intergenic | 25.0% |
| ! | TCGTAATTTCTTTGATGTTA+TGG | + | chr1_4:61350132-61350151 | Msa0175400:intron | 25.0% |
| ! | ATAGTTTACATTTCCTTGTT+AGG | + | chr1_4:61350341-61350360 | Msa0175400:intron | 25.0% |
| ! | TTTATACCAAGTAATGAGAT+CGG | + | chr1_4:61350877-61350896 | Msa0175400:CDS | 25.0% |
| ! | CAATTTTTATTACCTGGAGT+TGG | - | chr1_4:61349026-61349045 | None:intergenic | 30.0% |
| GACTCATAAGTAGTGTAAAA+TGG | + | chr1_4:61349232-61349251 | Msa0175400:intron | 30.0% | |
| ATAAGTAGTGTAAAATGGAC+AGG | + | chr1_4:61349237-61349256 | Msa0175400:intron | 30.0% | |
| TTGCTTCACTATCAATAAGA+TGG | + | chr1_4:61349383-61349402 | Msa0175400:intron | 30.0% | |
| TGATGTTTGGTTACAAAGTT+TGG | - | chr1_4:61349450-61349469 | None:intergenic | 30.0% | |
| AACTTTGTAACCAAACATCA+TGG | + | chr1_4:61349450-61349469 | Msa0175400:intron | 30.0% | |
| AAACAATGAACCATGATGTT+TGG | - | chr1_4:61349463-61349482 | None:intergenic | 30.0% | |
| AGGAATTATGAAGGTTAGAA+AGG | + | chr1_4:61349537-61349556 | Msa0175400:intron | 30.0% | |
| GGAATTATGAAGGTTAGAAA+GGG | + | chr1_4:61349538-61349557 | Msa0175400:intron | 30.0% | |
| TAATACTGATGAGATCAAAC+AGG | + | chr1_4:61349566-61349585 | Msa0175400:intron | 30.0% | |
| GATATTATAAGGTGTGAGAA+TGG | + | chr1_4:61350014-61350033 | Msa0175400:intron | 30.0% | |
| CATTCACATTCTATTTGAGT+AGG | - | chr1_4:61350066-61350085 | None:intergenic | 30.0% | |
| TTCTATCATAAAGTCACCAT+TGG | - | chr1_4:61350105-61350124 | None:intergenic | 30.0% | |
| ATGCCAACATGAGTATTATT+GGG | + | chr1_4:61350218-61350237 | Msa0175400:intron | 30.0% | |
| CAAATTTCAACTACCTAACA+AGG | - | chr1_4:61350357-61350376 | None:intergenic | 30.0% | |
| CTTGTTAGGTAGTTGAAATT+TGG | + | chr1_4:61350355-61350374 | Msa0175400:intron | 30.0% | |
| ! | CAAATGAATCCTCTTTTCAT+TGG | - | chr1_4:61350435-61350454 | None:intergenic | 30.0% |
| AAAGACAACTAAAGAAGAGT+TGG | + | chr1_4:61350557-61350576 | Msa0175400:intron | 30.0% | |
| !!! | TAGTACCTTATTTTGTAGAG+AGG | + | chr1_4:61350707-61350726 | Msa0175400:intron | 30.0% |
| ! | CAATTTTTATTACCTGGAGT+TGG | - | chr1_4:61349026-61349045 | None:intergenic | 30.0% |
| GACTCATAAGTAGTGTAAAA+TGG | + | chr1_4:61349232-61349251 | Msa0175400:intron | 30.0% | |
| ATAAGTAGTGTAAAATGGAC+AGG | + | chr1_4:61349237-61349256 | Msa0175400:intron | 30.0% | |
| TTGCTTCACTATCAATAAGA+TGG | + | chr1_4:61349383-61349402 | Msa0175400:intron | 30.0% | |
| TGATGTTTGGTTACAAAGTT+TGG | - | chr1_4:61349450-61349469 | None:intergenic | 30.0% | |
| AACTTTGTAACCAAACATCA+TGG | + | chr1_4:61349450-61349469 | Msa0175400:intron | 30.0% | |
| AAACAATGAACCATGATGTT+TGG | - | chr1_4:61349463-61349482 | None:intergenic | 30.0% | |
| AGGAATTATGAAGGTTAGAA+AGG | + | chr1_4:61349537-61349556 | Msa0175400:intron | 30.0% | |
| GGAATTATGAAGGTTAGAAA+GGG | + | chr1_4:61349538-61349557 | Msa0175400:intron | 30.0% | |
| TAATACTGATGAGATCAAAC+AGG | + | chr1_4:61349566-61349585 | Msa0175400:intron | 30.0% | |
| GATATTATAAGGTGTGAGAA+TGG | + | chr1_4:61350014-61350033 | Msa0175400:intron | 30.0% | |
| CATTCACATTCTATTTGAGT+AGG | - | chr1_4:61350066-61350085 | None:intergenic | 30.0% | |
| TTCTATCATAAAGTCACCAT+TGG | - | chr1_4:61350105-61350124 | None:intergenic | 30.0% | |
| ATGCCAACATGAGTATTATT+GGG | + | chr1_4:61350218-61350237 | Msa0175400:intron | 30.0% | |
| CAAATTTCAACTACCTAACA+AGG | - | chr1_4:61350357-61350376 | None:intergenic | 30.0% | |
| CTTGTTAGGTAGTTGAAATT+TGG | + | chr1_4:61350355-61350374 | Msa0175400:intron | 30.0% | |
| ! | CAAATGAATCCTCTTTTCAT+TGG | - | chr1_4:61350435-61350454 | None:intergenic | 30.0% |
| AAAGACAACTAAAGAAGAGT+TGG | + | chr1_4:61350557-61350576 | Msa0175400:intron | 30.0% | |
| !!! | TAGTACCTTATTTTGTAGAG+AGG | + | chr1_4:61350707-61350726 | Msa0175400:intron | 30.0% |
| GAAACTAAAGTTTGGCGTAA+AGG | + | chr1_4:61348846-61348865 | Msa0175400:CDS | 35.0% | |
| ATACTTTGCTGAGCTATCTT+CGG | - | chr1_4:61348948-61348967 | None:intergenic | 35.0% | |
| ! | ATTCTTAACGGGTACAATTC+AGG | + | chr1_4:61349299-61349318 | Msa0175400:intron | 35.0% |
| ! | TTCTTAACGGGTACAATTCA+GGG | + | chr1_4:61349300-61349319 | Msa0175400:intron | 35.0% |
| TCTATACCCATCATACCTAT+AGG | - | chr1_4:61349518-61349537 | None:intergenic | 35.0% | |
| !! | TATAGGTATGATGGGTATAG+AGG | + | chr1_4:61349517-61349536 | Msa0175400:intron | 35.0% |
| TGGGTATAGAGGAATTATGA+AGG | + | chr1_4:61349528-61349547 | Msa0175400:intron | 35.0% | |
| AGTTTAAGCATGGATTTCCA+TGG | + | chr1_4:61349700-61349719 | Msa0175400:intron | 35.0% | |
| GTTTAAGCATGGATTTCCAT+GGG | + | chr1_4:61349701-61349720 | Msa0175400:intron | 35.0% | |
| ! | TCTCTGCTATGTGGATTAAA+GGG | + | chr1_4:61349821-61349840 | Msa0175400:intron | 35.0% |
| ATAACCTTCTATGACTGCAT+TGG | + | chr1_4:61349887-61349906 | Msa0175400:intron | 35.0% | |
| AGGATGTGAATATTGTGAGA+TGG | - | chr1_4:61350046-61350065 | None:intergenic | 35.0% | |
| ! | AATCAGTGAGTTTTTCCTTG+AGG | + | chr1_4:61350180-61350199 | Msa0175400:intron | 35.0% |
| GATGCCAACATGAGTATTAT+TGG | + | chr1_4:61350217-61350236 | Msa0175400:intron | 35.0% | |
| TGCCAACATGAGTATTATTG+GGG | + | chr1_4:61350219-61350238 | Msa0175400:intron | 35.0% | |
| TTCCCCAATAATACTCATGT+TGG | - | chr1_4:61350224-61350243 | None:intergenic | 35.0% | |
| !!! | ATTGGGGAACACCTTTTTTA+TGG | + | chr1_4:61350235-61350254 | Msa0175400:intron | 35.0% |
| GATAACTTCCAAACAAGTGT+GGG | - | chr1_4:61350264-61350283 | None:intergenic | 35.0% | |
| TGATAACTTCCAAACAAGTG+TGG | - | chr1_4:61350265-61350284 | None:intergenic | 35.0% | |
| CATAGCATCAAAGAAGTCAT+TGG | - | chr1_4:61350293-61350312 | None:intergenic | 35.0% | |
| !! | AATGGCATTGATGGTTTGAT+AGG | - | chr1_4:61350412-61350431 | None:intergenic | 35.0% |
| ! | TTTCATTGGAATGGCATTGA+TGG | - | chr1_4:61350421-61350440 | None:intergenic | 35.0% |
| AATGCCATTCCAATGAAAAG+AGG | + | chr1_4:61350423-61350442 | Msa0175400:intron | 35.0% | |
| ! | GAATCCTCTTTTCATTGGAA+TGG | - | chr1_4:61350430-61350449 | None:intergenic | 35.0% |
| !!! | ACCTTATTTTGTAGAGAGGT+CGG | + | chr1_4:61350711-61350730 | Msa0175400:CDS | 35.0% |
| ! | TTTTGTTGAAACTCCTCCAT+TGG | - | chr1_4:61350775-61350794 | None:intergenic | 35.0% |
| GAAACTAAAGTTTGGCGTAA+AGG | + | chr1_4:61348846-61348865 | Msa0175400:CDS | 35.0% | |
| ATACTTTGCTGAGCTATCTT+CGG | - | chr1_4:61348948-61348967 | None:intergenic | 35.0% | |
| ! | ATTCTTAACGGGTACAATTC+AGG | + | chr1_4:61349299-61349318 | Msa0175400:intron | 35.0% |
| ! | TTCTTAACGGGTACAATTCA+GGG | + | chr1_4:61349300-61349319 | Msa0175400:intron | 35.0% |
| TCTATACCCATCATACCTAT+AGG | - | chr1_4:61349518-61349537 | None:intergenic | 35.0% | |
| !! | TATAGGTATGATGGGTATAG+AGG | + | chr1_4:61349517-61349536 | Msa0175400:intron | 35.0% |
| TGGGTATAGAGGAATTATGA+AGG | + | chr1_4:61349528-61349547 | Msa0175400:intron | 35.0% | |
| AGTTTAAGCATGGATTTCCA+TGG | + | chr1_4:61349700-61349719 | Msa0175400:intron | 35.0% | |
| GTTTAAGCATGGATTTCCAT+GGG | + | chr1_4:61349701-61349720 | Msa0175400:intron | 35.0% | |
| ! | TCTCTGCTATGTGGATTAAA+GGG | + | chr1_4:61349821-61349840 | Msa0175400:intron | 35.0% |
| ATAACCTTCTATGACTGCAT+TGG | + | chr1_4:61349887-61349906 | Msa0175400:intron | 35.0% | |
| AGGATGTGAATATTGTGAGA+TGG | - | chr1_4:61350046-61350065 | None:intergenic | 35.0% | |
| ! | AATCAGTGAGTTTTTCCTTG+AGG | + | chr1_4:61350180-61350199 | Msa0175400:intron | 35.0% |
| GATGCCAACATGAGTATTAT+TGG | + | chr1_4:61350217-61350236 | Msa0175400:intron | 35.0% | |
| TGCCAACATGAGTATTATTG+GGG | + | chr1_4:61350219-61350238 | Msa0175400:intron | 35.0% | |
| TTCCCCAATAATACTCATGT+TGG | - | chr1_4:61350224-61350243 | None:intergenic | 35.0% | |
| !!! | ATTGGGGAACACCTTTTTTA+TGG | + | chr1_4:61350235-61350254 | Msa0175400:intron | 35.0% |
| GATAACTTCCAAACAAGTGT+GGG | - | chr1_4:61350264-61350283 | None:intergenic | 35.0% | |
| TGATAACTTCCAAACAAGTG+TGG | - | chr1_4:61350265-61350284 | None:intergenic | 35.0% | |
| CATAGCATCAAAGAAGTCAT+TGG | - | chr1_4:61350293-61350312 | None:intergenic | 35.0% | |
| !! | AATGGCATTGATGGTTTGAT+AGG | - | chr1_4:61350412-61350431 | None:intergenic | 35.0% |
| ! | TTTCATTGGAATGGCATTGA+TGG | - | chr1_4:61350421-61350440 | None:intergenic | 35.0% |
| AATGCCATTCCAATGAAAAG+AGG | + | chr1_4:61350423-61350442 | Msa0175400:intron | 35.0% | |
| ! | GAATCCTCTTTTCATTGGAA+TGG | - | chr1_4:61350430-61350449 | None:intergenic | 35.0% |
| !!! | ACCTTATTTTGTAGAGAGGT+CGG | + | chr1_4:61350711-61350730 | Msa0175400:CDS | 35.0% |
| ! | TTTTGTTGAAACTCCTCCAT+TGG | - | chr1_4:61350775-61350794 | None:intergenic | 35.0% |
| !! | CACAAGATTGGCTTCTCATA+TGG | - | chr1_4:61348873-61348892 | None:intergenic | 40.0% |
| ATAGTCTTCAAGGGTTCCTT+TGG | - | chr1_4:61348922-61348941 | None:intergenic | 40.0% | |
| TACTTTGCTGAGCTATCTTC+GGG | - | chr1_4:61348947-61348966 | None:intergenic | 40.0% | |
| AGCTCAGCAAAGTATGTCAT+CGG | + | chr1_4:61348953-61348972 | Msa0175400:CDS | 40.0% | |
| GAGTTGGGTTTGAAAGCTTT+GGG | - | chr1_4:61349010-61349029 | None:intergenic | 40.0% | |
| ! | TCTTAACGGGTACAATTCAG+GGG | + | chr1_4:61349301-61349320 | Msa0175400:intron | 40.0% |
| CATTGTCATGTTGAGTACCT+GGG | - | chr1_4:61349489-61349508 | None:intergenic | 40.0% | |
| CAGGTACTCAACATGACAAT+GGG | + | chr1_4:61349488-61349507 | Msa0175400:intron | 40.0% | |
| ! | ATGACAATGGGTTCTCCTAT+AGG | + | chr1_4:61349500-61349519 | Msa0175400:intron | 40.0% |
| GGTTCTCCTATAGGTATGAT+GGG | + | chr1_4:61349509-61349528 | Msa0175400:intron | 40.0% | |
| ATGTGCAATCCATTGTGGTT+GGG | + | chr1_4:61349669-61349688 | Msa0175400:intron | 40.0% | |
| !! | AAAGTTTTCTACGGGTTGCA+TGG | - | chr1_4:61349749-61349768 | None:intergenic | 40.0% |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_4:61349757-61349776 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_4:61349758-61349777 | None:intergenic | 40.0% |
| ! | GTCTCTGCTATGTGGATTAA+AGG | + | chr1_4:61349820-61349839 | Msa0175400:intron | 40.0% |
| ACAACCAATGCAGTCATAGA+AGG | - | chr1_4:61349894-61349913 | None:intergenic | 40.0% | |
| !! | TTCTATGACTGCATTGGTTG+TGG | + | chr1_4:61349893-61349912 | Msa0175400:intron | 40.0% |
| ACCATATCAACGTCTTCCAA+TGG | + | chr1_4:61350086-61350105 | Msa0175400:intron | 40.0% | |
| ACCATTGGAAGACGTTGATA+TGG | - | chr1_4:61350090-61350109 | None:intergenic | 40.0% | |
| AGTGTGGGACACCATAAAAA+AGG | - | chr1_4:61350249-61350268 | None:intergenic | 40.0% | |
| AACTCCATAGTCTTCATGTC+TGG | + | chr1_4:61350516-61350535 | Msa0175400:intron | 40.0% | |
| ATCTCCAGACATGAAGACTA+TGG | - | chr1_4:61350523-61350542 | None:intergenic | 40.0% | |
| !! | CACAAGATTGGCTTCTCATA+TGG | - | chr1_4:61348873-61348892 | None:intergenic | 40.0% |
| ATAGTCTTCAAGGGTTCCTT+TGG | - | chr1_4:61348922-61348941 | None:intergenic | 40.0% | |
| TACTTTGCTGAGCTATCTTC+GGG | - | chr1_4:61348947-61348966 | None:intergenic | 40.0% | |
| AGCTCAGCAAAGTATGTCAT+CGG | + | chr1_4:61348953-61348972 | Msa0175400:CDS | 40.0% | |
| GAGTTGGGTTTGAAAGCTTT+GGG | - | chr1_4:61349010-61349029 | None:intergenic | 40.0% | |
| ! | TCTTAACGGGTACAATTCAG+GGG | + | chr1_4:61349301-61349320 | Msa0175400:intron | 40.0% |
| CATTGTCATGTTGAGTACCT+GGG | - | chr1_4:61349489-61349508 | None:intergenic | 40.0% | |
| CAGGTACTCAACATGACAAT+GGG | + | chr1_4:61349488-61349507 | Msa0175400:intron | 40.0% | |
| ! | ATGACAATGGGTTCTCCTAT+AGG | + | chr1_4:61349500-61349519 | Msa0175400:intron | 40.0% |
| GGTTCTCCTATAGGTATGAT+GGG | + | chr1_4:61349509-61349528 | Msa0175400:intron | 40.0% | |
| ATGTGCAATCCATTGTGGTT+GGG | + | chr1_4:61349669-61349688 | Msa0175400:intron | 40.0% | |
| !! | AAAGTTTTCTACGGGTTGCA+TGG | - | chr1_4:61349749-61349768 | None:intergenic | 40.0% |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_4:61349757-61349776 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_4:61349758-61349777 | None:intergenic | 40.0% |
| ! | GTCTCTGCTATGTGGATTAA+AGG | + | chr1_4:61349820-61349839 | Msa0175400:intron | 40.0% |
| ACAACCAATGCAGTCATAGA+AGG | - | chr1_4:61349894-61349913 | None:intergenic | 40.0% | |
| !! | TTCTATGACTGCATTGGTTG+TGG | + | chr1_4:61349893-61349912 | Msa0175400:intron | 40.0% |
| ACCATATCAACGTCTTCCAA+TGG | + | chr1_4:61350086-61350105 | Msa0175400:intron | 40.0% | |
| ACCATTGGAAGACGTTGATA+TGG | - | chr1_4:61350090-61350109 | None:intergenic | 40.0% | |
| AGTGTGGGACACCATAAAAA+AGG | - | chr1_4:61350249-61350268 | None:intergenic | 40.0% | |
| AACTCCATAGTCTTCATGTC+TGG | + | chr1_4:61350516-61350535 | Msa0175400:intron | 40.0% | |
| ATCTCCAGACATGAAGACTA+TGG | - | chr1_4:61350523-61350542 | None:intergenic | 40.0% | |
| GGATTGCATTTCAAGGCCAA+AGG | + | chr1_4:61348903-61348922 | Msa0175400:CDS | 45.0% | |
| CTTCGGGAGATAGTCTTCAA+GGG | - | chr1_4:61348931-61348950 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTCTTCA+AGG | - | chr1_4:61348932-61348951 | None:intergenic | 45.0% | |
| GGAGTTGGGTTTGAAAGCTT+TGG | - | chr1_4:61349011-61349030 | None:intergenic | 45.0% | |
| AAGCTTTCAAACCCAACTCC+AGG | + | chr1_4:61349011-61349030 | Msa0175400:CDS | 45.0% | |
| ATGGTTCATTGTTTGTGCCC+AGG | + | chr1_4:61349469-61349488 | Msa0175400:intron | 45.0% | |
| CCATTGTCATGTTGAGTACC+TGG | - | chr1_4:61349490-61349509 | None:intergenic | 45.0% | |
| CCAGGTACTCAACATGACAA+TGG | + | chr1_4:61349487-61349506 | Msa0175400:intron | 45.0% | |
| GGGTTCTCCTATAGGTATGA+TGG | + | chr1_4:61349508-61349527 | Msa0175400:intron | 45.0% | |
| !! | CCACAATGGATTGCACATCA+TGG | - | chr1_4:61349667-61349686 | None:intergenic | 45.0% |
| CCATGATGTGCAATCCATTG+TGG | + | chr1_4:61349664-61349683 | Msa0175400:intron | 45.0% | |
| GATGTGCAATCCATTGTGGT+TGG | + | chr1_4:61349668-61349687 | Msa0175400:intron | 45.0% | |
| GGCATGGTGTAGTTTAAGCA+TGG | + | chr1_4:61349690-61349709 | Msa0175400:intron | 45.0% | |
| GGTTACCCAGAATGTCCAAA+CGG | - | chr1_4:61349728-61349747 | None:intergenic | 45.0% | |
| TGAGAGTTGTCTCTGCTATG+TGG | + | chr1_4:61349812-61349831 | Msa0175400:intron | 45.0% | |
| ! | GTTTTTCCTTGAGGTCCTTG+AGG | + | chr1_4:61350189-61350208 | Msa0175400:intron | 45.0% |
| TATGGTGTCCCACACTTGTT+TGG | + | chr1_4:61350253-61350272 | Msa0175400:intron | 45.0% | |
| !! | GGCATTGATGGTTTGATAGG+TGG | - | chr1_4:61350409-61350428 | None:intergenic | 45.0% |
| GCCGACCTCTCTACAAAATA+AGG | - | chr1_4:61350715-61350734 | None:intergenic | 45.0% | |
| !! | ATTAGTGTCGGCCTCATAGT+CGG | - | chr1_4:61350739-61350758 | None:intergenic | 45.0% |
| GTCAGTGTCTCCATTAGTGT+CGG | - | chr1_4:61350751-61350770 | None:intergenic | 45.0% | |
| AATGGAGACACTGACACCAA+TGG | + | chr1_4:61350756-61350775 | Msa0175400:CDS | 45.0% | |
| ! | TCTTTAGAAGAGTGCAGCCA+AGG | - | chr1_4:61350903-61350922 | None:intergenic | 45.0% |
| GGATTGCATTTCAAGGCCAA+AGG | + | chr1_4:61348903-61348922 | Msa0175400:CDS | 45.0% | |
| CTTCGGGAGATAGTCTTCAA+GGG | - | chr1_4:61348931-61348950 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTCTTCA+AGG | - | chr1_4:61348932-61348951 | None:intergenic | 45.0% | |
| GGAGTTGGGTTTGAAAGCTT+TGG | - | chr1_4:61349011-61349030 | None:intergenic | 45.0% | |
| AAGCTTTCAAACCCAACTCC+AGG | + | chr1_4:61349011-61349030 | Msa0175400:CDS | 45.0% | |
| ATGGTTCATTGTTTGTGCCC+AGG | + | chr1_4:61349469-61349488 | Msa0175400:intron | 45.0% | |
| CCATTGTCATGTTGAGTACC+TGG | - | chr1_4:61349490-61349509 | None:intergenic | 45.0% | |
| CCAGGTACTCAACATGACAA+TGG | + | chr1_4:61349487-61349506 | Msa0175400:intron | 45.0% | |
| GGGTTCTCCTATAGGTATGA+TGG | + | chr1_4:61349508-61349527 | Msa0175400:intron | 45.0% | |
| !! | CCACAATGGATTGCACATCA+TGG | - | chr1_4:61349667-61349686 | None:intergenic | 45.0% |
| CCATGATGTGCAATCCATTG+TGG | + | chr1_4:61349664-61349683 | Msa0175400:intron | 45.0% | |
| GATGTGCAATCCATTGTGGT+TGG | + | chr1_4:61349668-61349687 | Msa0175400:intron | 45.0% | |
| GGCATGGTGTAGTTTAAGCA+TGG | + | chr1_4:61349690-61349709 | Msa0175400:intron | 45.0% | |
| GGTTACCCAGAATGTCCAAA+CGG | - | chr1_4:61349728-61349747 | None:intergenic | 45.0% | |
| TGAGAGTTGTCTCTGCTATG+TGG | + | chr1_4:61349812-61349831 | Msa0175400:intron | 45.0% | |
| ! | GTTTTTCCTTGAGGTCCTTG+AGG | + | chr1_4:61350189-61350208 | Msa0175400:intron | 45.0% |
| TATGGTGTCCCACACTTGTT+TGG | + | chr1_4:61350253-61350272 | Msa0175400:intron | 45.0% | |
| !! | GGCATTGATGGTTTGATAGG+TGG | - | chr1_4:61350409-61350428 | None:intergenic | 45.0% |
| GCCGACCTCTCTACAAAATA+AGG | - | chr1_4:61350715-61350734 | None:intergenic | 45.0% | |
| !! | ATTAGTGTCGGCCTCATAGT+CGG | - | chr1_4:61350739-61350758 | None:intergenic | 45.0% |
| GTCAGTGTCTCCATTAGTGT+CGG | - | chr1_4:61350751-61350770 | None:intergenic | 45.0% | |
| AATGGAGACACTGACACCAA+TGG | + | chr1_4:61350756-61350775 | Msa0175400:CDS | 45.0% | |
| ! | TCTTTAGAAGAGTGCAGCCA+AGG | - | chr1_4:61350903-61350922 | None:intergenic | 45.0% |
| CCACAGGCGTTACACAAGAT+TGG | - | chr1_4:61348885-61348904 | None:intergenic | 50.0% | |
| CCAATCTTGTGTAACGCCTG+TGG | + | chr1_4:61348882-61348901 | Msa0175400:CDS | 50.0% | |
| ! | CGCCTGTGGATTGCATTTCA+AGG | + | chr1_4:61348896-61348915 | Msa0175400:CDS | 50.0% |
| GGCCTTGAAATGCAATCCAC+AGG | - | chr1_4:61348901-61348920 | None:intergenic | 50.0% | |
| CAATCCATTGTGGTTGGGCA+TGG | + | chr1_4:61349674-61349693 | Msa0175400:intron | 50.0% | |
| TACACCATGCCCAACCACAA+TGG | - | chr1_4:61349681-61349700 | None:intergenic | 50.0% | |
| TGGATTTCCATGGGTCCGTT+TGG | + | chr1_4:61349710-61349729 | Msa0175400:intron | 50.0% | |
| AGAATGTCCAAACGGACCCA+TGG | - | chr1_4:61349720-61349739 | None:intergenic | 50.0% | |
| ATGGGTCCGTTTGGACATTC+TGG | + | chr1_4:61349719-61349738 | Msa0175400:intron | 50.0% | |
| TGGGTCCGTTTGGACATTCT+GGG | + | chr1_4:61349720-61349739 | Msa0175400:intron | 50.0% | |
| TGTTGGCATCATGCACCTCA+AGG | - | chr1_4:61350207-61350226 | None:intergenic | 50.0% | |
| GACTATGAGGCCGACACTAA+TGG | + | chr1_4:61350738-61350757 | Msa0175400:CDS | 50.0% | |
| CCAAGGCCGATCTCATTACT+TGG | - | chr1_4:61350886-61350905 | None:intergenic | 50.0% | |
| CCAAGTAATGAGATCGGCCT+TGG | + | chr1_4:61350883-61350902 | Msa0175400:CDS | 50.0% | |
| CCACAGGCGTTACACAAGAT+TGG | - | chr1_4:61348885-61348904 | None:intergenic | 50.0% | |
| CCAATCTTGTGTAACGCCTG+TGG | + | chr1_4:61348882-61348901 | Msa0175400:CDS | 50.0% | |
| ! | CGCCTGTGGATTGCATTTCA+AGG | + | chr1_4:61348896-61348915 | Msa0175400:CDS | 50.0% |
| GGCCTTGAAATGCAATCCAC+AGG | - | chr1_4:61348901-61348920 | None:intergenic | 50.0% | |
| CAATCCATTGTGGTTGGGCA+TGG | + | chr1_4:61349674-61349693 | Msa0175400:intron | 50.0% | |
| TACACCATGCCCAACCACAA+TGG | - | chr1_4:61349681-61349700 | None:intergenic | 50.0% | |
| TGGATTTCCATGGGTCCGTT+TGG | + | chr1_4:61349710-61349729 | Msa0175400:intron | 50.0% | |
| AGAATGTCCAAACGGACCCA+TGG | - | chr1_4:61349720-61349739 | None:intergenic | 50.0% | |
| ATGGGTCCGTTTGGACATTC+TGG | + | chr1_4:61349719-61349738 | Msa0175400:intron | 50.0% | |
| TGGGTCCGTTTGGACATTCT+GGG | + | chr1_4:61349720-61349739 | Msa0175400:intron | 50.0% | |
| TGTTGGCATCATGCACCTCA+AGG | - | chr1_4:61350207-61350226 | None:intergenic | 50.0% | |
| GACTATGAGGCCGACACTAA+TGG | + | chr1_4:61350738-61350757 | Msa0175400:CDS | 50.0% | |
| CCAAGGCCGATCTCATTACT+TGG | - | chr1_4:61350886-61350905 | None:intergenic | 50.0% | |
| CCAAGTAATGAGATCGGCCT+TGG | + | chr1_4:61350883-61350902 | Msa0175400:CDS | 50.0% | |
| CATGCACCTCAAGGACCTCA+AGG | - | chr1_4:61350198-61350217 | None:intergenic | 55.0% | |
| GGAGACACTGACACCAATGG+AGG | + | chr1_4:61350759-61350778 | Msa0175400:CDS | 55.0% | |
| CATGCACCTCAAGGACCTCA+AGG | - | chr1_4:61350198-61350217 | None:intergenic | 55.0% | |
| GGAGACACTGACACCAATGG+AGG | + | chr1_4:61350759-61350778 | Msa0175400:CDS | 55.0% | |
| !! | AGAGGTCGGCACCGACTATG+AGG | + | chr1_4:61350725-61350744 | Msa0175400:CDS | 60.0% |
| !! | AGAGGTCGGCACCGACTATG+AGG | + | chr1_4:61350725-61350744 | Msa0175400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61348834 | 61350963 | 61348834 | ID=Msa0175400;Name=Msa0175400 |
| chr1_4 | mRNA | 61348834 | 61350963 | 61348834 | ID=Msa0175400-mRNA-1;Parent=Msa0175400;Name=Msa0175400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0.5|2|0|150 |
| chr1_4 | exon | 61348834 | 61349032 | 61348834 | ID=Msa0175400-mRNA-1:exon:19593;Parent=Msa0175400-mRNA-1 |
| chr1_4 | exon | 61350710 | 61350963 | 61350710 | ID=Msa0175400-mRNA-1:exon:19594;Parent=Msa0175400-mRNA-1 |
| chr1_4 | CDS | 61348834 | 61349032 | 61348834 | ID=Msa0175400-mRNA-1:cds;Parent=Msa0175400-mRNA-1 |
| chr1_4 | CDS | 61350710 | 61350963 | 61350710 | ID=Msa0175400-mRNA-1:cds;Parent=Msa0175400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
