AlfalfaGEDB | Msa0176090

M. sativa cultivar zhongmu-4 / Msa0176090

KEGG: K06276
GO: GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0176090	sp\|Q9XF67\|PDPK1_ARATH	80.924	498	87	3	1	497	1	491	0.0	833

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0176090	A0A072VPR7	98.994	497	5	0	1	497	1	497	0.0	1018

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0176090	MtrunA17_Chr1g0197721	98.994	497	5	0	1	497	1	497	0.0	1018
Msa0176090	MtrunA17_Chr4g0059751	34.824	313	185	3	43	347	81	382	1.61e-66	220
Msa0176090	MtrunA17_Chr7g0245031	36.170	282	169	1	48	329	145	415	4.24e-64	215
Msa0176090	MtrunA17_Chr6g0478601	34.270	356	203	6	31	362	91	439	1.25e-56	196
Msa0176090	MtrunA17_Chr4g0030361	35.976	328	183	6	32	334	284	609	1.48e-55	196
Msa0176090	MtrunA17_Chr8g0369091	37.179	312	174	6	44	334	592	902	2.95e-55	199
Msa0176090	MtrunA17_Chr2g0285711	31.343	402	197	9	32	369	59	445	8.61e-54	187
Msa0176090	MtrunA17_Chr1g0183651	34.242	330	180	6	31	326	100	426	2.27e-52	186
Msa0176090	MtrunA17_Chr1g0167311	35.849	318	166	6	50	332	114	428	2.62e-52	185
Msa0176090	MtrunA17_Chr3g0135951	33.038	339	181	6	31	326	74	409	5.00e-52	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0176090	AT5G04510.1	80.924	498	87	3	1	497	1	491	0.0	833
Msa0176090	AT3G10540.1	81.288	497	82	4	1	497	1	486	0.0	831
Msa0176090	AT5G04510.2	78.841	397	76	3	1	396	1	390	0.0	648
Msa0176090	AT5G04510.3	85.374	294	36	2	1	294	1	287	0.0	526
Msa0176090	AT3G08720.1	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0176090	AT3G08720.3	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0176090	AT3G08720.4	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0176090	AT3G08720.2	37.943	282	163	2	48	329	137	406	9.83e-69	228
Msa0176090	AT3G08730.1	37.589	282	164	2	48	329	131	400	2.37e-67	224
Msa0176090	AT3G08730.2	37.589	282	164	2	48	329	131	400	2.37e-67	224

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Find 169 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGATGGGAATGTA+GGG	0.487589	1_4:-62326390	Msa0176090:five_prime_UTR
AAAGCTTTGGAATTGGAAAT+TGG	0.212137	1_4:+62326518	None:intergenic
AAAGGTGAAAGCTTTGGAAT+TGG	0.406284	1_4:+62326511	None:intergenic
AAATATAGCCGCACAATGCC+AGG	0.437484	1_4:+62324611	None:intergenic
AACAGTTACCCAAAGGTTGC+TGG	0.366889	1_4:+62323121	None:intergenic
AACTCCTCCGAAACTTGCTC+TGG	0.483658	1_4:-62321188	Msa0176090:CDS
AACTTGTTACTCACAACTGA+AGG	0.589816	1_4:-62323371	Msa0176090:CDS
AAGAGCATCTCAGTGGAAAA+AGG	0.364147	1_4:-62319758	Msa0176090:CDS
AAGCAAGAGACCTTATTGAC+CGG	0.573869	1_4:-62322763	Msa0176090:CDS
AAGGGAATTTGAGATTGGAA+TGG	0.509625	1_4:+62326487	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGATGTTATGCCTAAAT+TGG	+	chr1_4:62319432-62319451	None:intergenic	30.0%
AGAGAAGAAAACAATGATGT+TGG	+	chr1_4:62319484-62319503	None:intergenic	30.0%
CTAGAGAGAGAAAATTATGA+TGG	-	chr1_4:62319650-62319669	Msa0176090:three_prime_UTR	30.0%
ATTCCAAGCTAAAGATTCAA+AGG	-	chr1_4:62319733-62319752	Msa0176090:CDS	30.0%
TGAATTGTATAATTCTCCTG+AGG	+	chr1_4:62319834-62319853	None:intergenic	30.0%
TCAGGAGAATTATACAATTC+AGG	-	chr1_4:62319833-62319852	Msa0176090:intron	30.0%
TACAATTCAGGACTTTGAAT+TGG	-	chr1_4:62319845-62319864	Msa0176090:intron	30.0%
ACAATTCAGGACTTTGAATT+GGG	-	chr1_4:62319846-62319865	Msa0176090:intron	30.0%
GCACAAAAAAGAAACAAGTT+TGG	+	chr1_4:62319917-62319936	None:intergenic	30.0%
GTGATTATATATGTTGGTGT+CGG	-	chr1_4:62320130-62320149	Msa0176090:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	62319379	62326693	62319379	ID=Msa0176090;Name=Msa0176090
chr1_4	mRNA	62319379	62326693	62319379	ID=Msa0176090-mRNA-1;Parent=Msa0176090;Name=Msa0176090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=329\|1\|1\|1\|1\|1\|11\|353\|497
chr1_4	exon	62319379	62319815	62319379	ID=Msa0176090-mRNA-1:exon:20060;Parent=Msa0176090-mRNA-1
chr1_4	exon	62320079	62320301	62320079	ID=Msa0176090-mRNA-1:exon:20059;Parent=Msa0176090-mRNA-1
chr1_4	exon	62320886	62321049	62320886	ID=Msa0176090-mRNA-1:exon:20058;Parent=Msa0176090-mRNA-1
chr1_4	exon	62321174	62321314	62321174	ID=Msa0176090-mRNA-1:exon:20057;Parent=Msa0176090-mRNA-1
chr1_4	exon	62322757	62322922	62322757	ID=Msa0176090-mRNA-1:exon:20056;Parent=Msa0176090-mRNA-1
chr1_4	exon	62323130	62323208	62323130	ID=Msa0176090-mRNA-1:exon:20055;Parent=Msa0176090-mRNA-1
chr1_4	exon	62323291	62323399	62323291	ID=Msa0176090-mRNA-1:exon:20054;Parent=Msa0176090-mRNA-1
chr1_4	exon	62323476	62323577	62323476	ID=Msa0176090-mRNA-1:exon:20053;Parent=Msa0176090-mRNA-1
chr1_4	exon	62324423	62324475	62324423	ID=Msa0176090-mRNA-1:exon:20052;Parent=Msa0176090-mRNA-1
chr1_4	exon	62324585	62324765	62324585	ID=Msa0176090-mRNA-1:exon:20051;Parent=Msa0176090-mRNA-1
chr1_4	exon	62326173	62326693	62326173	ID=Msa0176090-mRNA-1:exon:20050;Parent=Msa0176090-mRNA-1
chr1_4	five_prime_UTR	62326365	62326693	62326365	ID=Msa0176090-mRNA-1:five_prime_utr;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62326173	62326364	62326173	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62324585	62324765	62324585	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62324423	62324475	62324423	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62323476	62323577	62323476	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62323291	62323399	62323291	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62323130	62323208	62323130	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62322757	62322922	62322757	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62321174	62321314	62321174	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62320886	62321049	62320886	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62320079	62320301	62320079	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	CDS	62319732	62319815	62319732	ID=Msa0176090-mRNA-1:cds;Parent=Msa0176090-mRNA-1
chr1_4	three_prime_UTR	62319379	62319731	62319379	ID=Msa0176090-mRNA-1:three_prime_utr;Parent=Msa0176090-mRNA-1

Gene Sequence

>Msa0176090

ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGCTAAAGATTCAAAGGAGTTCTTCCTCTTCCAATGGTGGTGGTGGTGGTGCTGGGAGTGTTCAGAGATCCAAAAGCTTTGCTTTTAGAGCTCCTCAGGAGAATTATACAATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAGTTGTGTATGCAATGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACTGCATATGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGCGGCTATATTTCACATTTCAAGACACATTTTCTCTGTACATGGCACTTGAATCATGTGAAGGTGGAGAGCTTTTTGATCAAATTACCAGGAAAAGTCGTCTAACTCAGGACGAGGCACGATTTTATGCAGCTGAAGTTGTCGATGCTCTTGAATACATACACAGTTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTGTTACTCACAACTGAAGGACATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATTACTGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACATTCGTGGGAACTGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCCCCAGCAACCTTTGGAAATGACCTTTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAAATTCGATTTCCTGATTACTTTTCAGACGAAGCAAGAGACCTTATTGACCGGCTATTGGATTTAGACCCCAGCAGGAGACCAGGTGCAGGACCCGATGGTTATGCTATTTTGAAAAGCCATCCCTTTTTCAAGGGGGTTGACTGGAATAACTTAAGGGCACAAACTCCTCCGAAACTTGCTCTGGAACCTGGGGCAGGGACTCAATCGCCTGCTGATGATTCTCATGAGTCGTCATGGAGTCCTGCTCACACTGGCGATGGTTCTGCAGCTTCTGCTAGACAGCCTGATGGTGCTACATCGTCTTCAGAGGGAACTGGTTCCATAACCAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGAGCCTGGGGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAGCTAACAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCAAAGTTGATCTATGTTGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCCTCAAATTTCAAGATTTGCACACCGAAAAAGGTAATGTCGTTTGAGGATGCAAAGCAAAGAGCATCTCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA

Protein sequence

>Msa0176090

MLEMEKDFDSKLKIQRSSSSSNGGGGGAGSVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGVVYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQITRKSRLTQDEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTTEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKSHPFFKGVDWNNLRAQTPPKLALEPGAGTQSPADDSHESSWSPAHTGDGSAASARQPDGATSSSEGTGSITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSNFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR*