AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176270 MtrunA17_Chr1g0163051 97.572 659 14 2 1 657 1 659 0.0 1329
Msa0176270 MtrunA17_Chr1g0163041 81.939 526 86 3 141 657 53 578 0.0 870
Msa0176270 MtrunA17_Chr8g0368901 73.673 471 120 3 189 656 299 768 0.0 746
Msa0176270 MtrunA17_Chr8g0368901 36.975 119 61 4 100 212 148 258 7.71e-12 68.6
Msa0176270 MtrunA17_Chr8g0369301 58.775 604 194 7 101 656 152 748 0.0 719
Msa0176270 MtrunA17_Chr8g0368911 51.528 720 257 12 7 655 66 764 0.0 707
Msa0176270 MtrunA17_Chr6g0467531 57.491 574 198 12 103 644 5 564 0.0 632
Msa0176270 MtrunA17_Chr6g0467421 57.143 574 200 12 103 644 5 564 0.0 622
Msa0176270 MtrunA17_Chr6g0467381 57.491 574 198 13 103 644 5 564 0.0 622
Msa0176270 MtrunA17_Chr6g0467401 56.969 574 201 13 103 644 5 564 0.0 617
Msa0176270 MtrunA17_Chr3g0094881 53.808 604 232 11 88 657 49 639 0.0 609
Msa0176270 MtrunA17_Chr6g0467411 54.669 514 174 10 158 644 1 482 0.0 528
Msa0176270 MtrunA17_Chr2g0306961 52.692 520 160 11 151 644 4 463 4.94e-178 514
Msa0176270 MtrunA17_Chr7g0255181 41.400 500 260 14 156 644 203 680 2.49e-113 356
Msa0176270 MtrunA17_Chr3g0080761 36.996 546 309 14 122 643 99 633 9.92e-108 340
Msa0176270 MtrunA17_Chr5g0399801 38.538 506 278 13 156 649 581 1065 7.87e-107 348
Msa0176270 MtrunA17_Chr8g0354821 39.960 503 279 14 156 645 167 659 2.26e-105 334
Msa0176270 MtrunA17_Chr4g0003501 34.944 621 323 19 57 647 360 929 4.39e-102 332
Msa0176270 MtrunA17_Chr4g0003511 37.624 505 283 12 156 649 545 1028 2.96e-99 327
Msa0176270 MtrunA17_Chr6g0476111 38.716 483 268 13 187 649 196 670 3.91e-90 295
Msa0176270 MtrunA17_Chr7g0252211 38.763 485 266 14 187 649 258 733 2.66e-88 291
Msa0176270 MtrunA17_Chr6g0476121 38.302 483 270 13 187 649 145 619 2.84e-87 286
Msa0176270 MtrunA17_Chr1g0170651 32.341 504 285 12 155 642 57 520 9.24e-58 204
Msa0176270 MtrunA17_Chr7g0232811 29.814 483 242 14 190 649 107 515 4.64e-55 196
Msa0176270 MtrunA17_Chr7g0232981 30.022 463 246 11 190 650 107 493 1.88e-49 180
Msa0176270 MtrunA17_Chr7g0232841 28.247 485 231 17 190 648 110 503 6.88e-44 165
Msa0176270 MtrunA17_Chr5g0448331 37.179 156 85 3 215 364 267 415 4.01e-19 91.7
Msa0176270 MtrunA17_Chr1g0190311 27.070 314 156 12 394 650 327 624 7.50e-19 90.9
Msa0176270 MtrunA17_Chr1g0183321 24.839 310 163 10 394 648 430 724 5.19e-18 88.6
Msa0176270 MtrunA17_Chr4g0075321 28.804 184 117 3 461 642 869 1040 5.24e-18 88.6
Msa0176270 MtrunA17_Chr5g0403241 30.667 225 119 7 440 643 1274 1482 6.91e-18 88.6
Msa0176270 MtrunA17_Chr8g0373821 29.508 183 115 4 461 642 346 515 1.03e-17 87.0
Msa0176270 MtrunA17_Chr8g0389931 34.615 156 89 3 215 364 261 409 1.53e-17 87.0
Msa0176270 MtrunA17_Chr6g0460921 27.027 222 135 6 438 657 215 411 4.60e-17 84.0
Msa0176270 MtrunA17_Chr7g0232861 35.333 150 81 5 190 336 106 242 4.63e-17 81.3
Msa0176270 MtrunA17_Chr7g0262001 24.679 312 151 13 394 644 388 676 3.06e-15 79.3
Msa0176270 MtrunA17_Chr7g0232761 34.591 159 84 6 190 343 123 266 5.69e-14 72.8
Msa0176270 MtrunA17_Chr3g0143561 32.000 150 91 3 215 364 187 325 7.17e-14 73.9
Msa0176270 MtrunA17_Chr7g0232751 43.077 65 37 0 585 649 31 95 1.89e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176270 AT4G13460.1 55.219 661 267 11 10 657 6 650 0.0 710
Msa0176270 AT4G13460.2 55.219 661 267 11 10 657 6 650 0.0 710
Msa0176270 AT2G33290.1 52.535 651 267 11 21 657 29 651 0.0 672
Msa0176270 AT2G33290.3 52.535 651 267 11 21 657 29 651 0.0 672
Msa0176270 AT2G33290.4 52.535 651 267 11 21 657 29 651 0.0 672
Msa0176270 AT2G33290.2 52.535 651 267 11 21 657 29 651 0.0 672
Msa0176270 AT5G04940.2 38.889 504 277 12 156 645 155 641 3.02e-103 329
Msa0176270 AT5G04940.1 38.889 504 277 12 156 645 155 641 3.02e-103 329
Msa0176270 AT1G73100.1 40.215 465 255 12 191 645 189 640 2.61e-99 318
Msa0176270 AT2G22740.2 36.328 512 293 9 156 649 270 766 1.86e-96 314
Msa0176270 AT2G22740.1 36.328 512 293 9 156 649 270 766 1.86e-96 314
Msa0176270 AT2G35160.5 36.260 524 274 12 143 649 254 734 8.09e-96 311
Msa0176270 AT2G35160.2 36.260 524 274 12 143 649 290 770 2.38e-95 311
Msa0176270 AT2G35160.3 36.260 524 274 12 143 649 290 770 2.38e-95 311
Msa0176270 AT2G35160.1 36.260 524 274 12 143 649 290 770 2.38e-95 311
Msa0176270 AT2G35160.4 36.260 524 274 12 143 649 290 770 2.38e-95 311
Msa0176270 AT5G13960.1 36.253 491 273 16 187 651 126 602 3.27e-87 285
Msa0176270 AT5G13960.2 36.383 470 262 14 207 651 11 468 5.66e-86 278
Msa0176270 AT1G17770.1 37.124 466 269 12 192 645 209 662 2.62e-80 269
Msa0176270 AT2G24740.1 36.454 502 283 14 156 652 262 732 2.33e-76 259
Msa0176270 AT5G47150.1 36.727 275 161 6 92 364 61 324 1.13e-38 146
Msa0176270 AT5G47160.1 37.674 215 122 6 149 360 202 407 1.05e-28 119
Msa0176270 AT5G47160.3 37.674 215 122 6 149 360 202 407 1.05e-28 119
Msa0176270 AT5G47160.2 37.674 215 122 6 149 360 202 407 1.05e-28 119
Msa0176270 AT2G05900.1 36.257 171 104 3 252 422 26 191 3.13e-21 95.5
Msa0176270 AT2G23740.3 32.632 190 104 6 461 643 1184 1356 3.60e-21 99.4
Msa0176270 AT2G23740.6 32.632 190 104 6 461 643 1184 1356 3.60e-21 99.4
Msa0176270 AT2G23740.2 32.632 190 104 6 461 643 1184 1356 3.60e-21 99.4
Msa0176270 AT2G23740.1 32.632 190 104 6 461 643 1177 1349 3.75e-21 99.4
Msa0176270 AT3G03750.2 29.808 208 120 6 437 643 141 323 2.00e-18 87.8
Msa0176270 AT1G57820.1 35.669 157 87 4 215 364 277 426 6.90e-18 88.2
Msa0176270 AT1G57820.3 35.669 157 87 4 215 364 277 426 6.90e-18 88.2
Msa0176270 AT1G57820.2 35.065 154 89 4 215 364 277 423 8.68e-17 84.7
Msa0176270 AT3G04380.3 23.856 306 163 10 394 644 130 420 8.11e-16 80.9
Msa0176270 AT3G04380.1 23.856 306 163 10 394 644 146 436 8.73e-16 80.9
Msa0176270 AT3G04380.2 23.856 306 163 10 394 644 119 409 9.81e-16 80.9
Msa0176270 AT3G04380.6 23.856 306 163 10 394 644 119 409 1.12e-15 80.5
Msa0176270 AT3G04380.4 23.856 306 163 10 394 644 146 436 1.12e-15 80.9
Msa0176270 AT3G04380.5 23.856 306 163 10 394 644 103 393 1.15e-15 80.5
Msa0176270 AT1G04050.2 25.382 327 164 11 382 644 387 697 5.96e-15 79.0
Msa0176270 AT1G04050.1 25.382 327 164 11 382 644 387 697 5.96e-15 79.0
Msa0176270 AT5G39550.1 33.121 157 91 4 215 364 262 411 6.74e-15 78.6
Msa0176270 AT1G04050.3 25.382 327 164 11 382 644 283 593 9.83e-15 78.2
Msa0176270 AT2G23740.4 33.108 148 75 6 461 601 1184 1314 1.36e-14 78.2
Msa0176270 AT2G23740.5 33.108 148 75 6 461 601 1184 1314 1.36e-14 78.2
Msa0176270 AT1G66040.1 33.566 143 82 3 215 351 262 397 8.97e-14 75.1
Msa0176270 AT1G66050.1 32.867 143 83 2 215 351 262 397 1.02e-13 75.1
Msa0176270 AT5G43990.16 27.011 174 109 4 473 644 503 660 3.71e-13 73.2
Msa0176270 AT5G43990.5 27.011 174 109 4 473 644 503 660 3.71e-13 73.2
Msa0176270 AT5G43990.17 27.011 174 109 4 473 644 503 660 3.71e-13 73.2
Msa0176270 AT5G43990.14 27.011 174 109 4 473 644 503 660 3.71e-13 73.2
Msa0176270 AT5G43990.15 27.011 174 109 4 473 644 526 683 4.24e-13 73.2
Msa0176270 AT5G43990.10 27.011 174 109 4 473 644 526 683 4.24e-13 73.2
Msa0176270 AT5G43990.3 27.011 174 109 4 473 644 523 680 4.77e-13 72.8
Msa0176270 AT5G43990.11 27.011 174 109 4 473 644 523 680 4.77e-13 72.8
Msa0176270 AT5G43990.1 27.011 174 109 4 473 644 523 680 4.77e-13 72.8
Msa0176270 AT5G43990.4 27.011 174 109 4 473 644 523 680 4.77e-13 72.8
Msa0176270 AT5G43990.9 27.011 174 109 4 473 644 546 703 5.45e-13 72.8
Msa0176270 AT5G43990.2 27.011 174 109 4 473 644 546 703 5.45e-13 72.8
Msa0176270 AT5G43990.7 27.011 174 109 4 473 644 434 591 5.84e-13 72.4
Msa0176270 AT5G43990.8 27.011 174 109 4 473 644 454 611 6.71e-13 72.4
Msa0176270 AT5G43990.12 27.011 174 109 4 473 644 454 611 6.71e-13 72.4
Msa0176270 AT5G43990.6 27.011 174 109 4 473 644 454 611 6.71e-13 72.4
Msa0176270 AT5G43990.13 27.011 174 109 4 473 644 454 611 6.71e-13 72.4
Msa0176270 AT1G57800.2 31.646 158 93 5 215 364 289 439 3.22e-12 70.1
Msa0176270 AT1G57800.1 32.857 140 80 4 215 347 289 421 8.50e-12 68.9

Find 182 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1_4:+62580157 Msa0176270:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1_4:-62579541 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1_4:-62579529 None:intergenic
CGGAACCGTGTTACGCAAAA+AGG 0.220274 1_4:+62580859 Msa0176270:CDS
ACCGGATCAGCGTCAGTTTC+GGG 0.257025 1_4:+62579838 Msa0176270:CDS
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1_4:+62579886 Msa0176270:CDS
AGAAGCCCGCTTTGACTATA+AGG 0.293128 1_4:-62580775 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1_4:+62580914 Msa0176270:CDS
TACCGGATCAGCGTCAGTTT+CGG 0.304741 1_4:+62579837 Msa0176270:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1_4:+62581119 Msa0176270:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1_4:+62581297 Msa0176270:CDS
GCAAGCCACATTCCTCATTC+TGG 0.324681 1_4:-62581160 None:intergenic
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1_4:+62580893 Msa0176270:CDS
AGGATTGTTGGCGCGATTCC+TGG 0.334668 1_4:+62580013 Msa0176270:CDS
CACCAGCAGGAGGGGCATTA+TGG 0.334995 1_4:-62579760 None:intergenic
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1_4:+62580424 Msa0176270:CDS
CTCTTTGTGTTTCATGAAAG+TGG 0.353540 1_4:+62580676 Msa0176270:CDS
GTATGGAGCGTGTCGGTATA+AGG 0.360786 1_4:+62580584 Msa0176270:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1_4:+62580352 Msa0176270:CDS
AGCTGGGATTGATTATTTGC+CGG 0.365503 1_4:+62580105 Msa0176270:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1_4:+62580295 Msa0176270:CDS
TTGTGTGTGGTTGGTTTACA+TGG 0.365764 1_4:+62580073 Msa0176270:CDS
GTCAGTTTCGGGACGTTGTT+AGG 0.371088 1_4:+62579849 Msa0176270:CDS
ATAGCTCTTGCATTTGCATC+TGG 0.371282 1_4:-62579707 None:intergenic
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1_4:+62580457 Msa0176270:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1_4:-62579603 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1_4:+62580906 Msa0176270:CDS
TGCATTATGGGATTGAGGTT+AGG 0.376465 1_4:+62580308 Msa0176270:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1_4:-62579407 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1_4:-62579390 None:intergenic
GCATTATGGGATTGAGGTTA+GGG 0.381831 1_4:+62580309 Msa0176270:CDS
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1_4:-62579624 None:intergenic
TTCAAACAGGTGGACGGAAT+GGG 0.394764 1_4:+62581056 Msa0176270:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1_4:+62580351 Msa0176270:CDS
ATGTTTATGATGGTTTGTAT+AGG 0.399652 1_4:+62580383 Msa0176270:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1_4:-62579609 None:intergenic
GACGAGGATGGTTTATGATT+CGG 0.406490 1_4:+62579874 Msa0176270:CDS
AATGACGGATGTTGGGTTAC+CGG 0.408229 1_4:+62579820 Msa0176270:CDS
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1_4:+62579610 Msa0176270:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1_4:-62579461 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1_4:-62580945 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1_4:+62580296 Msa0176270:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1_4:-62579597 None:intergenic
TGTATAGGATTATTGAATGC+TGG 0.416427 1_4:+62580398 Msa0176270:CDS
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1_4:+62580839 Msa0176270:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1_4:-62581204 None:intergenic
GCGATTCCTGGGATTTGTAT+TGG 0.420322 1_4:+62580025 Msa0176270:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1_4:+62580962 Msa0176270:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1_4:-62581123 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1_4:-62579594 None:intergenic
TCTTGATATTTCCAAGGGTA+TGG 0.441501 1_4:+62580567 Msa0176270:CDS
AATCGCGATAAGAGGATTGT+TGG 0.442442 1_4:+62580001 Msa0176270:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.452304 1_4:+62580373 Msa0176270:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1_4:+62580471 Msa0176270:CDS
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1_4:-62579412 None:intergenic
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1_4:+62580894 Msa0176270:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1_4:+62580901 Msa0176270:CDS
CTTGTTCGAATGACGGATGT+TGG 0.459771 1_4:+62579812 Msa0176270:CDS
CTCTTGATGTATCCAGAATG+AGG 0.465074 1_4:+62581148 Msa0176270:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1_4:+62580168 Msa0176270:CDS
TTGTTCGAATGACGGATGTT+GGG 0.470012 1_4:+62579813 Msa0176270:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1_4:-62579398 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1_4:-62579600 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1_4:+62580907 Msa0176270:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1_4:+62580211 Msa0176270:CDS
AGGTGATGTTATTATTTACT+CGG 0.473486 1_4:+62580204 Msa0176270:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1_4:+62580357 Msa0176270:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1_4:+62580418 Msa0176270:CDS
GCCCTTGAGAAACAAAATCT+AGG 0.476619 1_4:-62579559 None:intergenic
GAACAACCAACCACCACCAC+CGG 0.476859 1_4:+62579584 Msa0176270:CDS
TCCCGAAACTGACGCTGATC+CGG 0.482112 1_4:-62579839 None:intergenic
GGATTGTTGGCGCGATTCCT+GGG 0.482675 1_4:+62580014 Msa0176270:CDS
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1_4:+62579905 Msa0176270:CDS
AGGATGGAGTTGTGTGTGGT+TGG 0.488005 1_4:+62580064 Msa0176270:CDS
TACCATAATGCCCCTCCTGC+TGG 0.488379 1_4:+62579758 Msa0176270:CDS
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1_4:-62579590 None:intergenic
GAGTATGCATTATGGGATTG+AGG 0.491128 1_4:+62580303 Msa0176270:CDS
CATGAAAGTGGGAATGCGAC+AGG 0.494424 1_4:+62580688 Msa0176270:CDS
GCTGGGATTGATTATTTGCC+GGG 0.497020 1_4:+62580106 Msa0176270:CDS
GCTATTGTTCCGGTTCCTGC+TGG 0.497566 1_4:+62579725 Msa0176270:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1_4:+62580961 Msa0176270:CDS
TTTCAAACAGGTGGACGGAA+TGG 0.498875 1_4:+62581055 Msa0176270:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1_4:+62579457 Msa0176270:CDS
ACCGACACGCTCCATACCCT+TGG 0.501891 1_4:-62580578 None:intergenic
TGTGGCTGAATCGCGATAAG+AGG 0.502293 1_4:+62579993 Msa0176270:CDS
TTATCCTCACCAGCAGGAAC+CGG 0.503916 1_4:-62579734 None:intergenic
AATTTATCTCTGATTCAAGA+TGG 0.504650 1_4:+62581081 Msa0176270:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.511958 1_4:+62580876 Msa0176270:CDS
TATATCTCTTGATATTTCCA+AGG 0.512997 1_4:+62580561 Msa0176270:CDS
CGCAACCTCACCAGCAGGAG+GGG 0.513548 1_4:-62579768 None:intergenic
TCACATTATGCTGTTTGCGA+TGG 0.516973 1_4:+62581257 Msa0176270:CDS
GGTGATGTTATTATTTACTC+GGG 0.517521 1_4:+62580205 Msa0176270:CDS
TCTTTGTGTTTCATGAAAGT+GGG 0.518767 1_4:+62580677 Msa0176270:CDS
TTACTCGGGTCATGGTGGAC+AGG 0.519127 1_4:+62580219 Msa0176270:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1_4:+62580334 Msa0176270:CDS
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1_4:+62580161 Msa0176270:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1_4:-62579434 None:intergenic
GGATATTGAAATTCTTGCGT+TGG 0.527882 1_4:-62579485 None:intergenic
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1_4:+62580160 Msa0176270:CDS
TACATGGTCAACCACAAGCT+GGG 0.533174 1_4:+62580089 Msa0176270:CDS
ACTTTCCTTATAGTCAAAGC+GGG 0.536291 1_4:+62580770 Msa0176270:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1_4:+62580409 Msa0176270:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1_4:-62581291 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1_4:-62580151 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1_4:+62580905 Msa0176270:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1_4:+62579590 Msa0176270:CDS
ATATCTCTTGATATTTCCAA+GGG 0.542298 1_4:+62580562 Msa0176270:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1_4:+62580937 Msa0176270:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1_4:+62580263 Msa0176270:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1_4:-62579443 None:intergenic
TTCCGACGCTCATTCACTGA+AGG 0.548549 1_4:+62579641 Msa0176270:CDS
TAATGCCCCTCCTGCTGGTG+AGG 0.550096 1_4:+62579763 Msa0176270:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1_4:+62580921 Msa0176270:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1_4:-62581019 None:intergenic
CAAAGCGGGCTTCTCTTGAA+AGG 0.554951 1_4:+62580784 Msa0176270:CDS
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1_4:+62580792 Msa0176270:CDS
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1_4:+62580472 Msa0176270:CDS
AAGAGTGGAAAAGTAGCCCT+AGG 0.561014 1_4:-62580658 None:intergenic
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1_4:+62580262 Msa0176270:CDS
CGTTGTTAGGAGGACGAGGA+TGG 0.564376 1_4:+62579862 Msa0176270:CDS
TTACATGGTCAACCACAAGC+TGG 0.564688 1_4:+62580088 Msa0176270:CDS
CGATGAGGAGTCGAGGATTG+TGG 0.566797 1_4:+62579975 Msa0176270:CDS
ACATTCGCAACCTCACCAGC+AGG 0.568299 1_4:-62579773 None:intergenic
TCAAACAGGTGGACGGAATG+GGG 0.569248 1_4:+62581057 Msa0176270:CDS
GTGGACAGGATAAGAATTCG+AGG 0.571781 1_4:+62580233 Msa0176270:CDS
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1_4:+62580124 Msa0176270:CDS
ATTGAGGTTAGGGTTATTCG+CGG 0.572582 1_4:+62580319 Msa0176270:CDS
ACAGGATAAGAATTCGAGGC+AGG 0.572812 1_4:+62580237 Msa0176270:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1_4:-62581308 None:intergenic
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1_4:+62579906 Msa0176270:CDS
GTATAGGATGGAGTTGTGTG+TGG 0.574388 1_4:+62580060 Msa0176270:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1_4:-62581287 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1_4:+62580276 Msa0176270:CDS
TAAAGAGCTTGTTCGAATGA+CGG 0.576987 1_4:+62579805 Msa0176270:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1_4:-62579449 None:intergenic
TGTTCCGGTTCCTGCTGGTG+AGG 0.582296 1_4:+62579730 Msa0176270:CDS
AAATGCAAGAGCTATTGTTC+CGG 0.584406 1_4:+62579715 Msa0176270:CDS
TGGTAATTATCCTCACCAGC+AGG 0.585524 1_4:-62579740 None:intergenic
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1_4:+62581194 Msa0176270:CDS
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1_4:-62579621 None:intergenic
CTGGTGAGGTTGCGAATGTA+CGG 0.592271 1_4:+62579777 Msa0176270:CDS
CTTTCATGAAACACAAAGAG+TGG 0.592723 1_4:-62580673 None:intergenic
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1_4:+62579456 Msa0176270:CDS
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1_4:+62579613 Msa0176270:CDS
GGGACGTTGTTAGGAGGACG+AGG 0.594825 1_4:+62579858 Msa0176270:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1_4:-62581288 None:intergenic
AGTTTCGGGACGTTGTTAGG+AGG 0.598043 1_4:+62579852 Msa0176270:CDS
TCGCAACCTCACCAGCAGGA+GGG 0.598600 1_4:-62579769 None:intergenic
TCAAGAGATATAACACACAT+AGG 0.602330 1_4:-62580550 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1_4:-62579473 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1_4:-62581114 None:intergenic
TTAGGGTTATTCGCGGTGTG+AGG 0.610018 1_4:+62580326 Msa0176270:CDS
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1_4:-62579643 None:intergenic
ACATCACCAATACAAATCCC+AGG 0.617403 1_4:-62580031 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1_4:+62581006 Msa0176270:CDS
GACTTTCCTTATAGTCAAAG+CGG 0.621269 1_4:+62580769 Msa0176270:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1_4:+62580977 Msa0176270:CDS
TTCGCAACCTCACCAGCAGG+AGG 0.628056 1_4:-62579770 None:intergenic
CCATTCGAACTCATACTCCC+CGG 0.628119 1_4:-62580124 None:intergenic
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1_4:+62580281 Msa0176270:CDS
TATGAGGATGATGTTGATGA+AGG 0.637266 1_4:+62580184 Msa0176270:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1_4:-62581111 None:intergenic
ATCGCAAACAGCATAATGTG+AGG 0.644756 1_4:-62581255 None:intergenic
AAATAATCAATCCCAGCTTG+TGG 0.646654 1_4:-62580100 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1_4:+62581321 Msa0176270:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1_4:-62580535 None:intergenic
CTGGGATTGATTATTTGCCG+GGG 0.652302 1_4:+62580107 Msa0176270:CDS
TCGCAAACAGCATAATGTGA+GGG 0.654166 1_4:-62581254 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1_4:+62579960 Msa0176270:CDS
TGAGGCGGACAACTACAAGA+AGG 0.667023 1_4:-62580832 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1_4:+62580978 Msa0176270:CDS
ATTATTTACTCGGGTCATGG+TGG 0.676989 1_4:+62580214 Msa0176270:CDS
TCTACTACGATGAGGAGTCG+AGG 0.680653 1_4:+62579968 Msa0176270:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1_4:-62580847 None:intergenic
TCCAAGGGTATGGAGCGTGT+CGG 0.686880 1_4:+62580577 Msa0176270:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1_4:-62580637 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1_4:-62579433 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.724410 1_4:-62580850 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1_4:-62579432 None:intergenic
TGTATCCAGAATGAGGAATG+TGG 0.734351 1_4:+62581155 Msa0176270:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1_4:+62580963 Msa0176270:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1_4:-62579431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTGTTTCATAAAAAA+TGG + chr1_4:62580742-62580761 Msa0176270:CDS 15.0%
!!! TGTTTTTGTTTCATAAAAAA+TGG + chr1_4:62580742-62580761 Msa0176270:CDS 15.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_4:62579532-62579551 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_4:62580446-62580465 Msa0176270:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_4:62580449-62580468 Msa0176270:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_4:62579532-62579551 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_4:62580446-62580465 Msa0176270:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_4:62580449-62580468 Msa0176270:CDS 20.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_4:62579527-62579546 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_4:62579921-62579940 Msa0176270:CDS 25.0%
!!! TTGGTGATGTATTTTTGTAT+AGG + chr1_4:62580044-62580063 Msa0176270:CDS 25.0%
!!! TGATGTATTTTTGTATAGGA+TGG + chr1_4:62580048-62580067 Msa0176270:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1_4:62580204-62580223 Msa0176270:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_4:62580383-62580402 Msa0176270:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_4:62580561-62580580 Msa0176270:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_4:62580562-62580581 Msa0176270:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_4:62581081-62581100 Msa0176270:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_4:62579527-62579546 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_4:62579921-62579940 Msa0176270:CDS 25.0%
!!! TTGGTGATGTATTTTTGTAT+AGG + chr1_4:62580044-62580063 Msa0176270:CDS 25.0%
!!! TGATGTATTTTTGTATAGGA+TGG + chr1_4:62580048-62580067 Msa0176270:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1_4:62580204-62580223 Msa0176270:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_4:62580383-62580402 Msa0176270:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_4:62580561-62580580 Msa0176270:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_4:62580562-62580581 Msa0176270:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_4:62581081-62581100 Msa0176270:CDS 25.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_4:62579401-62579420 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+AGG - chr1_4:62579509-62579528 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_4:62579514-62579533 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1_4:62579557-62579576 Msa0176270:CDS 30.0%
!! ACCTAGATTTTGTTTCTCAA+GGG + chr1_4:62579558-62579577 Msa0176270:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1_4:62580205-62580224 Msa0176270:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_4:62580373-62580392 Msa0176270:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_4:62580398-62580417 Msa0176270:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_4:62580457-62580476 Msa0176270:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_4:62580489-62580508 Msa0176270:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_4:62580538-62580557 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_4:62580553-62580572 None:intergenic 30.0%
TCTTTGTGTTTCATGAAAGT+GGG + chr1_4:62580677-62580696 Msa0176270:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_4:62581022-62581041 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_4:62581138-62581157 None:intergenic 30.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_4:62579401-62579420 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+AGG - chr1_4:62579509-62579528 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_4:62579514-62579533 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1_4:62579557-62579576 Msa0176270:CDS 30.0%
!! ACCTAGATTTTGTTTCTCAA+GGG + chr1_4:62579558-62579577 Msa0176270:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1_4:62580205-62580224 Msa0176270:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_4:62580373-62580392 Msa0176270:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_4:62580398-62580417 Msa0176270:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_4:62580457-62580476 Msa0176270:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_4:62580489-62580508 Msa0176270:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_4:62580538-62580557 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_4:62580553-62580572 None:intergenic 30.0%
TCTTTGTGTTTCATGAAAGT+GGG + chr1_4:62580677-62580696 Msa0176270:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_4:62581022-62581041 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_4:62581138-62581157 None:intergenic 30.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_4:62579488-62579507 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_4:62579544-62579563 None:intergenic 35.0%
AAATGCAAGAGCTATTGTTC+CGG + chr1_4:62579715-62579734 Msa0176270:CDS 35.0%
! TAAAGAGCTTGTTCGAATGA+CGG + chr1_4:62579805-62579824 Msa0176270:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_4:62579886-62579905 Msa0176270:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG - chr1_4:62580103-62580122 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_4:62580154-62580173 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_4:62580184-62580203 Msa0176270:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_4:62580211-62580230 Msa0176270:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_4:62580409-62580428 Msa0176270:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_4:62580418-62580437 Msa0176270:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_4:62580424-62580443 Msa0176270:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_4:62580472-62580491 Msa0176270:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_4:62580492-62580511 Msa0176270:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_4:62580506-62580525 Msa0176270:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_4:62580567-62580586 Msa0176270:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_4:62580640-62580659 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_4:62580641-62580660 Msa0176270:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_4:62580642-62580661 Msa0176270:CDS 35.0%
CTTTCATGAAACACAAAGAG+TGG - chr1_4:62580676-62580695 None:intergenic 35.0%
CTCTTTGTGTTTCATGAAAG+TGG + chr1_4:62580676-62580695 Msa0176270:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_4:62580769-62580788 Msa0176270:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_4:62580770-62580789 Msa0176270:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_4:62580876-62580895 Msa0176270:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_4:62580894-62580913 Msa0176270:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_4:62580948-62580967 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG + chr1_4:62580962-62580981 Msa0176270:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1_4:62580963-62580982 Msa0176270:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_4:62581006-62581025 Msa0176270:CDS 35.0%
!! ATCCGAATCGTTTTTCAAAC+AGG + chr1_4:62581043-62581062 Msa0176270:CDS 35.0%
CACCTGTTTGAAAAACGATT+CGG - chr1_4:62581048-62581067 None:intergenic 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_4:62581126-62581145 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_4:62581135-62581154 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_4:62581207-62581226 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_4:62579488-62579507 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_4:62579544-62579563 None:intergenic 35.0%
AAATGCAAGAGCTATTGTTC+CGG + chr1_4:62579715-62579734 Msa0176270:CDS 35.0%
! TAAAGAGCTTGTTCGAATGA+CGG + chr1_4:62579805-62579824 Msa0176270:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_4:62579886-62579905 Msa0176270:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG - chr1_4:62580103-62580122 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_4:62580154-62580173 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_4:62580184-62580203 Msa0176270:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_4:62580211-62580230 Msa0176270:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_4:62580409-62580428 Msa0176270:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_4:62580418-62580437 Msa0176270:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_4:62580424-62580443 Msa0176270:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_4:62580472-62580491 Msa0176270:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_4:62580492-62580511 Msa0176270:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_4:62580506-62580525 Msa0176270:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_4:62580567-62580586 Msa0176270:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_4:62580640-62580659 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_4:62580641-62580660 Msa0176270:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_4:62580642-62580661 Msa0176270:CDS 35.0%
CTTTCATGAAACACAAAGAG+TGG - chr1_4:62580676-62580695 None:intergenic 35.0%
CTCTTTGTGTTTCATGAAAG+TGG + chr1_4:62580676-62580695 Msa0176270:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_4:62580769-62580788 Msa0176270:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_4:62580770-62580789 Msa0176270:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_4:62580876-62580895 Msa0176270:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_4:62580894-62580913 Msa0176270:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_4:62580948-62580967 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG + chr1_4:62580962-62580981 Msa0176270:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1_4:62580963-62580982 Msa0176270:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_4:62581006-62581025 Msa0176270:CDS 35.0%
!! ATCCGAATCGTTTTTCAAAC+AGG + chr1_4:62581043-62581062 Msa0176270:CDS 35.0%
CACCTGTTTGAAAAACGATT+CGG - chr1_4:62581048-62581067 None:intergenic 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_4:62581126-62581145 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_4:62581135-62581154 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_4:62581207-62581226 None:intergenic 35.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_4:62579410-62579429 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_4:62579434-62579453 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_4:62579435-62579454 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_4:62579436-62579455 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_4:62579437-62579456 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_4:62579446-62579465 None:intergenic 40.0%
GCCCTTGAGAAACAAAATCT+AGG - chr1_4:62579562-62579581 None:intergenic 40.0%
ATAGCTCTTGCATTTGCATC+TGG - chr1_4:62579710-62579729 None:intergenic 40.0%
!! TTGTTCGAATGACGGATGTT+GGG + chr1_4:62579813-62579832 Msa0176270:CDS 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1_4:62579874-62579893 Msa0176270:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_4:62579960-62579979 Msa0176270:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_4:62580001-62580020 Msa0176270:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_4:62580034-62580053 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_4:62580073-62580092 Msa0176270:CDS 40.0%
AGCTGGGATTGATTATTTGC+CGG + chr1_4:62580105-62580124 Msa0176270:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_4:62580157-62580176 Msa0176270:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_4:62580160-62580179 Msa0176270:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_4:62580161-62580180 Msa0176270:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_4:62580214-62580233 Msa0176270:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_4:62580259-62580278 Msa0176270:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_4:62580295-62580314 Msa0176270:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1_4:62580296-62580315 Msa0176270:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1_4:62580303-62580322 Msa0176270:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG + chr1_4:62580308-62580327 Msa0176270:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG + chr1_4:62580309-62580328 Msa0176270:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+CGG + chr1_4:62580319-62580338 Msa0176270:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_4:62580351-62580370 Msa0176270:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_4:62580471-62580490 Msa0176270:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_4:62580712-62580731 Msa0176270:CDS 40.0%
! GTCAATGTGAGAGCTTTTGT+GGG + chr1_4:62580713-62580732 Msa0176270:CDS 40.0%
! TCAATGTGAGAGCTTTTGTG+GGG + chr1_4:62580714-62580733 Msa0176270:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_4:62580808-62580827 Msa0176270:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_4:62580814-62580833 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_4:62580867-62580886 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_4:62580872-62580891 Msa0176270:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_4:62580893-62580912 Msa0176270:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_4:62580937-62580956 Msa0176270:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1_4:62580961-62580980 Msa0176270:CDS 40.0%
!! CGAATCGTTTTTCAAACAGG+TGG + chr1_4:62581046-62581065 Msa0176270:CDS 40.0%
!! TCGTTTTTCAAACAGGTGGA+CGG + chr1_4:62581050-62581069 Msa0176270:CDS 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_4:62581119-62581138 Msa0176270:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG + chr1_4:62581148-62581167 Msa0176270:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG + chr1_4:62581155-62581174 Msa0176270:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_4:62581194-62581213 Msa0176270:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_4:62581257-62581276 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_4:62581258-62581277 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_4:62581257-62581276 Msa0176270:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_4:62581297-62581316 Msa0176270:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_4:62581311-62581330 None:intergenic 40.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_4:62579410-62579429 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_4:62579434-62579453 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_4:62579435-62579454 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_4:62579436-62579455 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_4:62579437-62579456 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_4:62579446-62579465 None:intergenic 40.0%
GCCCTTGAGAAACAAAATCT+AGG - chr1_4:62579562-62579581 None:intergenic 40.0%
ATAGCTCTTGCATTTGCATC+TGG - chr1_4:62579710-62579729 None:intergenic 40.0%
!! TTGTTCGAATGACGGATGTT+GGG + chr1_4:62579813-62579832 Msa0176270:CDS 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1_4:62579874-62579893 Msa0176270:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_4:62579960-62579979 Msa0176270:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_4:62580001-62580020 Msa0176270:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_4:62580034-62580053 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_4:62580073-62580092 Msa0176270:CDS 40.0%
AGCTGGGATTGATTATTTGC+CGG + chr1_4:62580105-62580124 Msa0176270:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_4:62580157-62580176 Msa0176270:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_4:62580160-62580179 Msa0176270:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_4:62580161-62580180 Msa0176270:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_4:62580214-62580233 Msa0176270:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_4:62580259-62580278 Msa0176270:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_4:62580295-62580314 Msa0176270:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1_4:62580296-62580315 Msa0176270:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1_4:62580303-62580322 Msa0176270:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG + chr1_4:62580308-62580327 Msa0176270:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG + chr1_4:62580309-62580328 Msa0176270:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+CGG + chr1_4:62580319-62580338 Msa0176270:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_4:62580351-62580370 Msa0176270:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_4:62580471-62580490 Msa0176270:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_4:62580712-62580731 Msa0176270:CDS 40.0%
! GTCAATGTGAGAGCTTTTGT+GGG + chr1_4:62580713-62580732 Msa0176270:CDS 40.0%
! TCAATGTGAGAGCTTTTGTG+GGG + chr1_4:62580714-62580733 Msa0176270:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_4:62580808-62580827 Msa0176270:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_4:62580814-62580833 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_4:62580867-62580886 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_4:62580872-62580891 Msa0176270:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_4:62580893-62580912 Msa0176270:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_4:62580937-62580956 Msa0176270:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1_4:62580961-62580980 Msa0176270:CDS 40.0%
!! CGAATCGTTTTTCAAACAGG+TGG + chr1_4:62581046-62581065 Msa0176270:CDS 40.0%
!! TCGTTTTTCAAACAGGTGGA+CGG + chr1_4:62581050-62581069 Msa0176270:CDS 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_4:62581119-62581138 Msa0176270:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG + chr1_4:62581148-62581167 Msa0176270:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG + chr1_4:62581155-62581174 Msa0176270:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_4:62581194-62581213 Msa0176270:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_4:62581257-62581276 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_4:62581258-62581277 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_4:62581257-62581276 Msa0176270:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_4:62581297-62581316 Msa0176270:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_4:62581311-62581330 None:intergenic 40.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_4:62579452-62579471 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1_4:62579646-62579665 None:intergenic 45.0%
TGGTAATTATCCTCACCAGC+AGG - chr1_4:62579743-62579762 None:intergenic 45.0%
!! CTTGTTCGAATGACGGATGT+TGG + chr1_4:62579812-62579831 Msa0176270:CDS 45.0%
!! AATGACGGATGTTGGGTTAC+CGG + chr1_4:62579820-62579839 Msa0176270:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_4:62579892-62579911 Msa0176270:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_4:62579905-62579924 Msa0176270:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_4:62579906-62579925 Msa0176270:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG + chr1_4:62580025-62580044 Msa0176270:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_4:62580060-62580079 Msa0176270:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr1_4:62580088-62580107 Msa0176270:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr1_4:62580089-62580108 Msa0176270:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_4:62580106-62580125 Msa0176270:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_4:62580107-62580126 Msa0176270:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_4:62580168-62580187 Msa0176270:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG + chr1_4:62580233-62580252 Msa0176270:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG + chr1_4:62580237-62580256 Msa0176270:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_4:62580255-62580274 Msa0176270:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_4:62580262-62580281 Msa0176270:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_4:62580263-62580282 Msa0176270:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_4:62580352-62580371 Msa0176270:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_4:62580357-62580376 Msa0176270:CDS 45.0%
AAGAGTGGAAAAGTAGCCCT+AGG - chr1_4:62580661-62580680 None:intergenic 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_4:62580778-62580797 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_4:62580792-62580811 Msa0176270:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_4:62580860-62580879 Msa0176270:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_4:62580901-62580920 Msa0176270:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_4:62580905-62580924 Msa0176270:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_4:62580906-62580925 Msa0176270:CDS 45.0%
TTTCAAACAGGTGGACGGAA+TGG + chr1_4:62581055-62581074 Msa0176270:CDS 45.0%
TTCAAACAGGTGGACGGAAT+GGG + chr1_4:62581056-62581075 Msa0176270:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_4:62581114-62581133 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_4:62581117-62581136 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_4:62581294-62581313 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_4:62581321-62581340 Msa0176270:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_4:62579452-62579471 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1_4:62579646-62579665 None:intergenic 45.0%
TGGTAATTATCCTCACCAGC+AGG - chr1_4:62579743-62579762 None:intergenic 45.0%
!! CTTGTTCGAATGACGGATGT+TGG + chr1_4:62579812-62579831 Msa0176270:CDS 45.0%
!! AATGACGGATGTTGGGTTAC+CGG + chr1_4:62579820-62579839 Msa0176270:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_4:62579892-62579911 Msa0176270:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_4:62579905-62579924 Msa0176270:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_4:62579906-62579925 Msa0176270:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG + chr1_4:62580025-62580044 Msa0176270:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_4:62580060-62580079 Msa0176270:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr1_4:62580088-62580107 Msa0176270:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr1_4:62580089-62580108 Msa0176270:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_4:62580106-62580125 Msa0176270:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_4:62580107-62580126 Msa0176270:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_4:62580168-62580187 Msa0176270:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG + chr1_4:62580233-62580252 Msa0176270:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG + chr1_4:62580237-62580256 Msa0176270:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_4:62580255-62580274 Msa0176270:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_4:62580262-62580281 Msa0176270:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_4:62580263-62580282 Msa0176270:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_4:62580352-62580371 Msa0176270:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_4:62580357-62580376 Msa0176270:CDS 45.0%
AAGAGTGGAAAAGTAGCCCT+AGG - chr1_4:62580661-62580680 None:intergenic 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_4:62580778-62580797 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_4:62580792-62580811 Msa0176270:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_4:62580860-62580879 Msa0176270:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_4:62580901-62580920 Msa0176270:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_4:62580905-62580924 Msa0176270:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_4:62580906-62580925 Msa0176270:CDS 45.0%
TTTCAAACAGGTGGACGGAA+TGG + chr1_4:62581055-62581074 Msa0176270:CDS 45.0%
TTCAAACAGGTGGACGGAAT+GGG + chr1_4:62581056-62581075 Msa0176270:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_4:62581114-62581133 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_4:62581117-62581136 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_4:62581294-62581313 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_4:62581321-62581340 Msa0176270:CDS 45.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_4:62579415-62579434 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_4:62579456-62579475 Msa0176270:CDS 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1_4:62579624-62579643 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1_4:62579627-62579646 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1_4:62579641-62579660 Msa0176270:CDS 50.0%
TTATCCTCACCAGCAGGAAC+CGG - chr1_4:62579737-62579756 None:intergenic 50.0%
CTGGTGAGGTTGCGAATGTA+CGG + chr1_4:62579777-62579796 Msa0176270:CDS 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_4:62579837-62579856 Msa0176270:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG + chr1_4:62579849-62579868 Msa0176270:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG + chr1_4:62579852-62579871 Msa0176270:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_4:62579968-62579987 Msa0176270:CDS 50.0%
TGTGGCTGAATCGCGATAAG+AGG + chr1_4:62579993-62580012 Msa0176270:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_4:62580064-62580083 Msa0176270:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_4:62580127-62580146 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_4:62580276-62580295 Msa0176270:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_4:62580281-62580300 Msa0176270:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_4:62580326-62580345 Msa0176270:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_4:62580334-62580353 Msa0176270:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_4:62580584-62580603 Msa0176270:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1_4:62580688-62580707 Msa0176270:CDS 50.0%
! TGTGAGAGCTTTTGTGGGGA+AGG + chr1_4:62580718-62580737 Msa0176270:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_4:62580784-62580803 Msa0176270:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_4:62580835-62580854 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_4:62580839-62580858 Msa0176270:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_4:62580853-62580872 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_4:62580859-62580878 Msa0176270:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_4:62580907-62580926 Msa0176270:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_4:62580921-62580940 Msa0176270:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1_4:62580977-62580996 Msa0176270:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1_4:62580978-62580997 Msa0176270:CDS 50.0%
TCAAACAGGTGGACGGAATG+GGG + chr1_4:62581057-62581076 Msa0176270:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_4:62581163-62581182 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_4:62581290-62581309 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_4:62581291-62581310 None:intergenic 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_4:62579415-62579434 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_4:62579456-62579475 Msa0176270:CDS 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1_4:62579624-62579643 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1_4:62579627-62579646 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1_4:62579641-62579660 Msa0176270:CDS 50.0%
TTATCCTCACCAGCAGGAAC+CGG - chr1_4:62579737-62579756 None:intergenic 50.0%
CTGGTGAGGTTGCGAATGTA+CGG + chr1_4:62579777-62579796 Msa0176270:CDS 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_4:62579837-62579856 Msa0176270:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG + chr1_4:62579849-62579868 Msa0176270:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG + chr1_4:62579852-62579871 Msa0176270:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_4:62579968-62579987 Msa0176270:CDS 50.0%
TGTGGCTGAATCGCGATAAG+AGG + chr1_4:62579993-62580012 Msa0176270:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_4:62580064-62580083 Msa0176270:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_4:62580127-62580146 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_4:62580276-62580295 Msa0176270:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_4:62580281-62580300 Msa0176270:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_4:62580326-62580345 Msa0176270:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_4:62580334-62580353 Msa0176270:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_4:62580584-62580603 Msa0176270:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1_4:62580688-62580707 Msa0176270:CDS 50.0%
! TGTGAGAGCTTTTGTGGGGA+AGG + chr1_4:62580718-62580737 Msa0176270:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_4:62580784-62580803 Msa0176270:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_4:62580835-62580854 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_4:62580839-62580858 Msa0176270:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_4:62580853-62580872 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_4:62580859-62580878 Msa0176270:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_4:62580907-62580926 Msa0176270:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_4:62580921-62580940 Msa0176270:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1_4:62580977-62580996 Msa0176270:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1_4:62580978-62580997 Msa0176270:CDS 50.0%
TCAAACAGGTGGACGGAATG+GGG + chr1_4:62581057-62581076 Msa0176270:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_4:62581163-62581182 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_4:62581290-62581309 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_4:62581291-62581310 None:intergenic 50.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_4:62579416-62579435 Msa0176270:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_4:62579457-62579476 Msa0176270:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_4:62579464-62579483 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_4:62579476-62579495 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_4:62579584-62579603 Msa0176270:CDS 55.0%
GCTATTGTTCCGGTTCCTGC+TGG + chr1_4:62579725-62579744 Msa0176270:CDS 55.0%
TACCATAATGCCCCTCCTGC+TGG + chr1_4:62579758-62579777 Msa0176270:CDS 55.0%
ACATTCGCAACCTCACCAGC+AGG - chr1_4:62579776-62579795 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_4:62579838-62579857 Msa0176270:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_4:62579842-62579861 None:intergenic 55.0%
CGTTGTTAGGAGGACGAGGA+TGG + chr1_4:62579862-62579881 Msa0176270:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_4:62579975-62579994 Msa0176270:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG + chr1_4:62580013-62580032 Msa0176270:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG + chr1_4:62580014-62580033 Msa0176270:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_4:62580124-62580143 Msa0176270:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG + chr1_4:62580219-62580238 Msa0176270:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_4:62580577-62580596 Msa0176270:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_4:62580850-62580869 None:intergenic 55.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_4:62579416-62579435 Msa0176270:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_4:62579457-62579476 Msa0176270:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_4:62579464-62579483 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_4:62579476-62579495 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_4:62579584-62579603 Msa0176270:CDS 55.0%
GCTATTGTTCCGGTTCCTGC+TGG + chr1_4:62579725-62579744 Msa0176270:CDS 55.0%
TACCATAATGCCCCTCCTGC+TGG + chr1_4:62579758-62579777 Msa0176270:CDS 55.0%
ACATTCGCAACCTCACCAGC+AGG - chr1_4:62579776-62579795 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_4:62579838-62579857 Msa0176270:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_4:62579842-62579861 None:intergenic 55.0%
CGTTGTTAGGAGGACGAGGA+TGG + chr1_4:62579862-62579881 Msa0176270:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_4:62579975-62579994 Msa0176270:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG + chr1_4:62580013-62580032 Msa0176270:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG + chr1_4:62580014-62580033 Msa0176270:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_4:62580124-62580143 Msa0176270:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG + chr1_4:62580219-62580238 Msa0176270:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_4:62580577-62580596 Msa0176270:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_4:62580850-62580869 None:intergenic 55.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_4:62579425-62579444 None:intergenic 60.0%
TGTTCCGGTTCCTGCTGGTG+AGG + chr1_4:62579730-62579749 Msa0176270:CDS 60.0%
!! CACCAGCAGGAGGGGCATTA+TGG - chr1_4:62579763-62579782 None:intergenic 60.0%
TAATGCCCCTCCTGCTGGTG+AGG + chr1_4:62579763-62579782 Msa0176270:CDS 60.0%
TCGCAACCTCACCAGCAGGA+GGG - chr1_4:62579772-62579791 None:intergenic 60.0%
TTCGCAACCTCACCAGCAGG+AGG - chr1_4:62579773-62579792 None:intergenic 60.0%
GGGACGTTGTTAGGAGGACG+AGG + chr1_4:62579858-62579877 Msa0176270:CDS 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_4:62580581-62580600 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_4:62580914-62580933 Msa0176270:CDS 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_4:62579425-62579444 None:intergenic 60.0%
TGTTCCGGTTCCTGCTGGTG+AGG + chr1_4:62579730-62579749 Msa0176270:CDS 60.0%
!! CACCAGCAGGAGGGGCATTA+TGG - chr1_4:62579763-62579782 None:intergenic 60.0%
TAATGCCCCTCCTGCTGGTG+AGG + chr1_4:62579763-62579782 Msa0176270:CDS 60.0%
TCGCAACCTCACCAGCAGGA+GGG - chr1_4:62579772-62579791 None:intergenic 60.0%
TTCGCAACCTCACCAGCAGG+AGG - chr1_4:62579773-62579792 None:intergenic 60.0%
GGGACGTTGTTAGGAGGACG+AGG + chr1_4:62579858-62579877 Msa0176270:CDS 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_4:62580581-62580600 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_4:62580914-62580933 Msa0176270:CDS 60.0%
CGCAACCTCACCAGCAGGAG+GGG - chr1_4:62579771-62579790 None:intergenic 65.0%
CGCAACCTCACCAGCAGGAG+GGG - chr1_4:62579771-62579790 None:intergenic 65.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1_4:62579612-62579631 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1_4:62579613-62579632 Msa0176270:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1_4:62579612-62579631 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1_4:62579613-62579632 Msa0176270:CDS 70.0%
CCAACCACCACCACCGGCGC+CGG + chr1_4:62579590-62579609 Msa0176270:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1_4:62579610-62579629 Msa0176270:CDS 75.0%
CCAACCACCACCACCGGCGC+CGG + chr1_4:62579590-62579609 Msa0176270:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1_4:62579610-62579629 Msa0176270:CDS 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_4:62579593-62579612 None:intergenic 80.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_4:62579593-62579612 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_4:62579597-62579616 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1_4:62579600-62579619 None:intergenic 85.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_4:62579597-62579616 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1_4:62579600-62579619 None:intergenic 85.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1_4:62579603-62579622 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1_4:62579606-62579625 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1_4:62579603-62579622 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1_4:62579606-62579625 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 62579392 62581365 62579392 ID=Msa0176270;Name=Msa0176270
chr1_4 mRNA 62579392 62581365 62579392 ID=Msa0176270-mRNA-1;Parent=Msa0176270;Name=Msa0176270-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|657
chr1_4 exon 62579392 62581365 62579392 ID=Msa0176270-mRNA-1:exon:20157;Parent=Msa0176270-mRNA-1
chr1_4 CDS 62579392 62581365 62579392 ID=Msa0176270-mRNA-1:cds;Parent=Msa0176270-mRNA-1
Gene Sequence

>Msa0176270

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCTAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGGCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAGATTCAAAACAATGATGCTGTTGATGAAAATCCAGATGCAAATGCAAGAGCTATTGTTCCGGTTCCTGCTGGTGAGGATAATTACCATAATGCCCCTCCTGCTGGTGAGGTTGCGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACGGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTTGTTAGGAGGACGAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGCTGAATCGCGATAAGAGGATTGTTGGCGCGATTCCTGGGATTTGTATTGGTGATGTATTTTTGTATAGGATGGAGTTGTGTGTGGTTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGTGATGTTATTATTTACTCGGGTCATGGTGGACAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTTAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCGTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACTCTTTGTGTTTCATGAAAGTGGGAATGCGACAGGTTGTCAATGTGAGAGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAAAATGGAAATGACTTTCCTTATAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACGCAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCAAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTATCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>Msa0176270

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNNDAVDENPDANARAIVPVPAGEDNYHNAPPAGEVANVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDKCNDPMCFEYLPRATFPLFVFHESGNATGCQCESFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN*