Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176280 | A0A396IHE6 | 64.646 | 297 | 61 | 4 | 1 | 256 | 30 | 323 | 1.28e-124 | 367 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0176280 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176280 | MtrunA17_Chr4g0067431 | 64.646 | 297 | 61 | 4 | 1 | 256 | 30 | 323 | 2.47e-128 | 367 |
| Msa0176280 | MtrunA17_Chr1g0163221 | 53.401 | 294 | 80 | 5 | 2 | 256 | 27 | 302 | 3.36e-91 | 273 |
| Msa0176280 | MtrunA17_Chr1g0163061 | 62.979 | 235 | 19 | 2 | 1 | 167 | 30 | 264 | 5.69e-76 | 232 |
| Msa0176280 | MtrunA17_Chr6g0467351 | 56.633 | 196 | 69 | 1 | 1 | 180 | 30 | 225 | 3.92e-72 | 221 |
| Msa0176280 | MtrunA17_Chr6g0467361 | 57.955 | 88 | 33 | 2 | 169 | 252 | 7 | 94 | 8.54e-30 | 107 |
| Msa0176280 | MtrunA17_Chr1g0163071 | 26.230 | 305 | 161 | 10 | 2 | 253 | 2 | 295 | 2.60e-21 | 90.9 |
| Msa0176280 | MtrunA17_Chr1g0208771 | 23.891 | 293 | 169 | 8 | 1 | 249 | 12 | 294 | 7.21e-20 | 88.6 |
| Msa0176280 | MtrunA17_Chr8g0390841 | 25.763 | 295 | 168 | 11 | 1 | 253 | 54 | 339 | 1.15e-16 | 79.3 |
| Msa0176280 | MtrunA17_Chr7g0233561 | 25.830 | 271 | 147 | 8 | 1 | 226 | 33 | 294 | 1.31e-15 | 75.5 |
| Msa0176280 | MtrunA17_Chr3g0103171 | 26.199 | 271 | 163 | 10 | 1 | 244 | 5 | 265 | 3.55e-15 | 73.2 |
| Msa0176280 | MtrunA17_Chr1g0163131 | 28.070 | 285 | 153 | 11 | 2 | 243 | 34 | 309 | 1.34e-14 | 72.4 |
| Msa0176280 | MtrunA17_Chr3g0131891 | 27.675 | 271 | 165 | 12 | 2 | 244 | 35 | 302 | 3.79e-14 | 71.2 |
| Msa0176280 | MtrunA17_Chr1g0163181 | 24.460 | 278 | 169 | 11 | 1 | 243 | 20 | 291 | 4.00e-14 | 71.6 |
| Msa0176280 | MtrunA17_Chr3g0103181 | 25.670 | 261 | 171 | 8 | 1 | 244 | 25 | 279 | 1.16e-13 | 69.3 |
| Msa0176280 | MtrunA17_Chr1g0163081 | 41.463 | 82 | 42 | 4 | 2 | 81 | 6 | 83 | 4.51e-13 | 65.1 |
| Msa0176280 | MtrunA17_Chr7g0233541 | 24.643 | 280 | 172 | 10 | 2 | 244 | 2 | 279 | 5.78e-13 | 67.4 |
| Msa0176280 | MtrunA17_Chr1g0163261 | 23.282 | 262 | 178 | 8 | 1 | 243 | 24 | 281 | 6.11e-13 | 67.4 |
| Msa0176280 | MtrunA17_Chr7g0233521 | 25.725 | 276 | 157 | 10 | 2 | 244 | 2 | 262 | 7.31e-13 | 67.0 |
| Msa0176280 | MtrunA17_Chr1g0162161 | 41.463 | 82 | 42 | 4 | 2 | 81 | 4 | 81 | 7.68e-13 | 64.7 |
| Msa0176280 | MtrunA17_Chr3g0103151 | 40.541 | 74 | 43 | 1 | 1 | 74 | 25 | 97 | 8.75e-13 | 64.7 |
| Msa0176280 | MtrunA17_Chr1g0163121 | 42.683 | 82 | 41 | 4 | 2 | 81 | 11 | 88 | 2.56e-12 | 63.2 |
| Msa0176280 | MtrunA17_Chr7g0233571 | 39.773 | 88 | 51 | 2 | 2 | 88 | 26 | 112 | 2.80e-12 | 64.7 |
| Msa0176280 | MtrunA17_Chr1g0163201 | 22.530 | 253 | 166 | 7 | 1 | 226 | 18 | 267 | 5.06e-12 | 65.5 |
| Msa0176280 | MtrunA17_Chr1g0163251 | 26.007 | 273 | 158 | 13 | 1 | 243 | 20 | 278 | 6.86e-12 | 64.7 |
| Msa0176280 | MtrunA17_Chr6g0476181 | 42.466 | 73 | 38 | 3 | 2 | 74 | 2 | 70 | 8.36e-12 | 62.0 |
| Msa0176280 | MtrunA17_Chr1g0163101 | 41.463 | 82 | 42 | 4 | 2 | 81 | 33 | 110 | 2.35e-11 | 61.2 |
| Msa0176280 | MtrunA17_Chr7g0233531 | 26.568 | 271 | 161 | 11 | 2 | 244 | 2 | 262 | 6.05e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCACAATAATTTGAAATT+TGG | 0.147270 | 1_4:+62588569 | Msa0176280:CDS |
| AAAACAAATACCTTCAAAAT+AGG | 0.198463 | 1_4:-62588681 | None:intergenic |
| GAAGACGGTGATGGAGATTT+TGG | 0.237780 | 1_4:-62587680 | None:intergenic |
| TTTGGAAGCTTTAGAGTAAC+TGG | 0.268635 | 1_4:-62587377 | None:intergenic |
| AAATCTCCATCACCGTCTTC+TGG | 0.279447 | 1_4:+62587683 | Msa0176280:CDS |
| CTTCATCACGGCGAGGTAAA+AGG | 0.303506 | 1_4:+62587657 | Msa0176280:CDS |
| AAACTAGTCATCAAACTGTT+TGG | 0.380683 | 1_4:+62587429 | Msa0176280:CDS |
| TACGAAATCTTGCAAGTGCT+TGG | 0.399301 | 1_4:-62587772 | None:intergenic |
| AAACAAATACCTTCAAAATA+GGG | 0.411333 | 1_4:-62588680 | None:intergenic |
| AACTAGTTGTGATGATCTTA+AGG | 0.416202 | 1_4:+62587940 | Msa0176280:CDS |
| TGCCCATAAGTTTCGTGAAA+AGG | 0.442811 | 1_4:+62587333 | Msa0176280:CDS |
| CCAACCATTGTCCACATCCT+TGG | 0.446067 | 1_4:-62587798 | None:intergenic |
| AATAATCAATATACATTAAG+TGG | 0.456541 | 1_4:+62588527 | Msa0176280:CDS |
| TCACTTTATCATACAAAACT+TGG | 0.467338 | 1_4:-62587970 | None:intergenic |
| CCAGAGAGAAAATAGCAACT+TGG | 0.469913 | 1_4:-62588640 | None:intergenic |
| ATTTCGTAATTCCAAGGATG+TGG | 0.486265 | 1_4:+62587787 | Msa0176280:CDS |
| AAATTCTCTCTTTAATGTGA+TGG | 0.506079 | 1_4:+62587529 | Msa0176280:CDS |
| AATATACATTAAGTGGTGGT+TGG | 0.506646 | 1_4:+62588534 | Msa0176280:CDS |
| TAAGTTTCGTGAAAAGGCAT+TGG | 0.531413 | 1_4:+62587339 | Msa0176280:CDS |
| TGCAAGATTTCGTAATTCCA+AGG | 0.532461 | 1_4:+62587781 | Msa0176280:CDS |
| ATACATTAAAAGAGATCTCA+TGG | 0.552062 | 1_4:+62588045 | Msa0176280:CDS |
| GAAACTCCAGAAGACGGTGA+TGG | 0.556216 | 1_4:-62587689 | None:intergenic |
| TTGTTGATCAAGACAAAACA+TGG | 0.556288 | 1_4:+62588480 | Msa0176280:CDS |
| GCATAGGATGGAAGGAGGAA+AGG | 0.589943 | 1_4:+62588450 | Msa0176280:intron |
| TTGGAAGCTTTAGAGTAACT+GGG | 0.591654 | 1_4:-62587376 | None:intergenic |
| TTCTTAGAAACTCCAGAAGA+CGG | 0.613948 | 1_4:-62587695 | None:intergenic |
| TTCGTGAAAAGGCATTGGCA+AGG | 0.614166 | 1_4:+62587344 | Msa0176280:CDS |
| AATCAATATACATTAAGTGG+TGG | 0.631074 | 1_4:+62588530 | Msa0176280:CDS |
| AATTCCAAGGATGTGGACAA+TGG | 0.641627 | 1_4:+62587794 | Msa0176280:CDS |
| TTATTAAGCATCCTTCATCA+CGG | 0.666639 | 1_4:+62587645 | Msa0176280:CDS |
| AAGCATCCTTCATCACGGCG+AGG | 0.724034 | 1_4:+62587650 | Msa0176280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+TGG | + | chr1_4:62589566-62589585 | Msa0176280:intron | 0.0% |
| !!! | ATTTTTTTTTTTTTTTTTTT+TGG | + | chr1_4:62589566-62589585 | Msa0176280:intron | 0.0% |
| !!! | TACTTTATATTTGTTTTTTT+GGG | + | chr1_4:62587893-62587912 | Msa0176280:intron | 10.0% |
| !! | TAAGAAATAATATATTAAAG+TGG | - | chr1_4:62588234-62588253 | None:intergenic | 10.0% |
| !! | ATATTGTGTAAAAAAAAAAA+TGG | + | chr1_4:62588744-62588763 | Msa0176280:intron | 10.0% |
| !!! | TACTTTATATTTGTTTTTTT+GGG | + | chr1_4:62587893-62587912 | Msa0176280:intron | 10.0% |
| !! | TAAGAAATAATATATTAAAG+TGG | - | chr1_4:62588234-62588253 | None:intergenic | 10.0% |
| !! | ATATTGTGTAAAAAAAAAAA+TGG | + | chr1_4:62588744-62588763 | Msa0176280:intron | 10.0% |
| !!! | CTACTTTATATTTGTTTTTT+TGG | + | chr1_4:62587892-62587911 | Msa0176280:intron | 15.0% |
| !! | CATCTTAGAATAAATAAAAA+AGG | - | chr1_4:62588356-62588375 | None:intergenic | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | + | chr1_4:62588527-62588546 | Msa0176280:CDS | 15.0% |
| !!! | ATTAAGAGTGTAAAAATATA+AGG | + | chr1_4:62588911-62588930 | Msa0176280:intron | 15.0% |
| !!! | TTAAGAGTGTAAAAATATAA+GGG | + | chr1_4:62588912-62588931 | Msa0176280:intron | 15.0% |
| !! | TATCATTTATATATTGCATT+TGG | - | chr1_4:62589202-62589221 | None:intergenic | 15.0% |
| !!! | CTACTTTATATTTGTTTTTT+TGG | + | chr1_4:62587892-62587911 | Msa0176280:intron | 15.0% |
| !! | CATCTTAGAATAAATAAAAA+AGG | - | chr1_4:62588356-62588375 | None:intergenic | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | + | chr1_4:62588527-62588546 | Msa0176280:CDS | 15.0% |
| !!! | ATTAAGAGTGTAAAAATATA+AGG | + | chr1_4:62588911-62588930 | Msa0176280:intron | 15.0% |
| !!! | TTAAGAGTGTAAAAATATAA+GGG | + | chr1_4:62588912-62588931 | Msa0176280:intron | 15.0% |
| !! | TATCATTTATATATTGCATT+TGG | - | chr1_4:62589202-62589221 | None:intergenic | 15.0% |
| !! | AATATATTAAAGTGGCATTA+TGG | - | chr1_4:62588226-62588245 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | + | chr1_4:62588397-62588416 | Msa0176280:intron | 20.0% |
| !! | AAACAAATACCTTCAAAATA+GGG | - | chr1_4:62588683-62588702 | None:intergenic | 20.0% |
| !! | AAAACAAATACCTTCAAAAT+AGG | - | chr1_4:62588684-62588703 | None:intergenic | 20.0% |
| !! | TTACACAATATAGTAAAAGA+TGG | - | chr1_4:62588735-62588754 | None:intergenic | 20.0% |
| !! | GAAAAAAATAAAACCCTAAA+TGG | + | chr1_4:62588878-62588897 | Msa0176280:intron | 20.0% |
| !! | AATATATTTCCATAAGGAAA+TGG | - | chr1_4:62589099-62589118 | None:intergenic | 20.0% |
| !! | ACTTTGACATATTCAAAATT+TGG | + | chr1_4:62589144-62589163 | Msa0176280:intron | 20.0% |
| !! | TAACATAATATCATGACTAT+TGG | - | chr1_4:62589318-62589337 | None:intergenic | 20.0% |
| !! | TACTACAAAAAAAATTCATG+TGG | - | chr1_4:62589348-62589367 | None:intergenic | 20.0% |
| !! | AATATATTAAAGTGGCATTA+TGG | - | chr1_4:62588226-62588245 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | + | chr1_4:62588397-62588416 | Msa0176280:intron | 20.0% |
| !! | AAACAAATACCTTCAAAATA+GGG | - | chr1_4:62588683-62588702 | None:intergenic | 20.0% |
| !! | AAAACAAATACCTTCAAAAT+AGG | - | chr1_4:62588684-62588703 | None:intergenic | 20.0% |
| !! | TTACACAATATAGTAAAAGA+TGG | - | chr1_4:62588735-62588754 | None:intergenic | 20.0% |
| !! | GAAAAAAATAAAACCCTAAA+TGG | + | chr1_4:62588878-62588897 | Msa0176280:intron | 20.0% |
| !! | AATATATTTCCATAAGGAAA+TGG | - | chr1_4:62589099-62589118 | None:intergenic | 20.0% |
| !! | ACTTTGACATATTCAAAATT+TGG | + | chr1_4:62589144-62589163 | Msa0176280:intron | 20.0% |
| !! | TAACATAATATCATGACTAT+TGG | - | chr1_4:62589318-62589337 | None:intergenic | 20.0% |
| !! | TACTACAAAAAAAATTCATG+TGG | - | chr1_4:62589348-62589367 | None:intergenic | 20.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | + | chr1_4:62587403-62587422 | Msa0176280:CDS | 25.0% |
| ! | AAATTCTCTCTTTAATGTGA+TGG | + | chr1_4:62587529-62587548 | Msa0176280:CDS | 25.0% |
| !!! | GGTTTTATTCTATCATGTTA+TGG | + | chr1_4:62587819-62587838 | Msa0176280:intron | 25.0% |
| !!! | TTTTTTTGGTCCTACTTTTT+AGG | + | chr1_4:62587864-62587883 | Msa0176280:intron | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | - | chr1_4:62587973-62587992 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | - | chr1_4:62588039-62588058 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | + | chr1_4:62588045-62588064 | Msa0176280:CDS | 25.0% |
| ! | GCATTATGGTATAACTTTAT+TGG | - | chr1_4:62588212-62588231 | None:intergenic | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | + | chr1_4:62588396-62588415 | Msa0176280:intron | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | + | chr1_4:62588530-62588549 | Msa0176280:CDS | 25.0% |
| !! | GCTCACAATAATTTGAAATT+TGG | + | chr1_4:62588569-62588588 | Msa0176280:CDS | 25.0% |
| ! | AGATGGCAATAGAAAAATAA+CGG | - | chr1_4:62588718-62588737 | None:intergenic | 25.0% |
| !! | TTATCTCTTTTGGTATAGAA+TGG | - | chr1_4:62588799-62588818 | None:intergenic | 25.0% |
| !!! | CTCTCTATTTTTATCTCTTT+TGG | - | chr1_4:62588809-62588828 | None:intergenic | 25.0% |
| ! | TAAGTGATCTGATATGAATA+GGG | + | chr1_4:62588850-62588869 | Msa0176280:intron | 25.0% |
| ! | AATTTCCTTACATCCATTTA+GGG | - | chr1_4:62588894-62588913 | None:intergenic | 25.0% |
| ! | TAATTTCCTTACATCCATTT+AGG | - | chr1_4:62588895-62588914 | None:intergenic | 25.0% |
| ! | AAAAGAATGAAAGTTAGAGA+AGG | + | chr1_4:62589032-62589051 | Msa0176280:intron | 25.0% |
| ! | AATGGCAATATATTTCCATA+AGG | - | chr1_4:62589105-62589124 | None:intergenic | 25.0% |
| !!! | AGTCATGACTATTTTTTTTG+TGG | + | chr1_4:62589256-62589275 | Msa0176280:intron | 25.0% |
| ! | TACTACTAATAAACGACATT+AGG | + | chr1_4:62589416-62589435 | Msa0176280:intron | 25.0% |
| ! | TGAAAATGAACTGTTACAAA+CGG | - | chr1_4:62589454-62589473 | None:intergenic | 25.0% |
| ! | TGATACATGTATATTGAAGA+TGG | + | chr1_4:62589533-62589552 | Msa0176280:intron | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | + | chr1_4:62587403-62587422 | Msa0176280:CDS | 25.0% |
| ! | AAATTCTCTCTTTAATGTGA+TGG | + | chr1_4:62587529-62587548 | Msa0176280:CDS | 25.0% |
| !!! | GGTTTTATTCTATCATGTTA+TGG | + | chr1_4:62587819-62587838 | Msa0176280:intron | 25.0% |
| !!! | TTTTTTTGGTCCTACTTTTT+AGG | + | chr1_4:62587864-62587883 | Msa0176280:intron | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | - | chr1_4:62587973-62587992 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | - | chr1_4:62588039-62588058 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | + | chr1_4:62588045-62588064 | Msa0176280:CDS | 25.0% |
| ! | GCATTATGGTATAACTTTAT+TGG | - | chr1_4:62588212-62588231 | None:intergenic | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | + | chr1_4:62588396-62588415 | Msa0176280:intron | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | + | chr1_4:62588530-62588549 | Msa0176280:CDS | 25.0% |
| !! | GCTCACAATAATTTGAAATT+TGG | + | chr1_4:62588569-62588588 | Msa0176280:CDS | 25.0% |
| ! | AGATGGCAATAGAAAAATAA+CGG | - | chr1_4:62588718-62588737 | None:intergenic | 25.0% |
| !! | TTATCTCTTTTGGTATAGAA+TGG | - | chr1_4:62588799-62588818 | None:intergenic | 25.0% |
| !!! | CTCTCTATTTTTATCTCTTT+TGG | - | chr1_4:62588809-62588828 | None:intergenic | 25.0% |
| ! | TAAGTGATCTGATATGAATA+GGG | + | chr1_4:62588850-62588869 | Msa0176280:intron | 25.0% |
| ! | AATTTCCTTACATCCATTTA+GGG | - | chr1_4:62588894-62588913 | None:intergenic | 25.0% |
| ! | TAATTTCCTTACATCCATTT+AGG | - | chr1_4:62588895-62588914 | None:intergenic | 25.0% |
| ! | AAAAGAATGAAAGTTAGAGA+AGG | + | chr1_4:62589032-62589051 | Msa0176280:intron | 25.0% |
| ! | AATGGCAATATATTTCCATA+AGG | - | chr1_4:62589105-62589124 | None:intergenic | 25.0% |
| !!! | AGTCATGACTATTTTTTTTG+TGG | + | chr1_4:62589256-62589275 | Msa0176280:intron | 25.0% |
| ! | TACTACTAATAAACGACATT+AGG | + | chr1_4:62589416-62589435 | Msa0176280:intron | 25.0% |
| ! | TGAAAATGAACTGTTACAAA+CGG | - | chr1_4:62589454-62589473 | None:intergenic | 25.0% |
| ! | TGATACATGTATATTGAAGA+TGG | + | chr1_4:62589533-62589552 | Msa0176280:intron | 25.0% |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | + | chr1_4:62587402-62587421 | Msa0176280:CDS | 30.0% |
| AAACTAGTCATCAAACTGTT+TGG | + | chr1_4:62587429-62587448 | Msa0176280:CDS | 30.0% | |
| ! | CTTCAGTGGTTTCTTTTAAA+GGG | - | chr1_4:62587586-62587605 | None:intergenic | 30.0% |
| ! | TCTTCAGTGGTTTCTTTTAA+AGG | - | chr1_4:62587587-62587606 | None:intergenic | 30.0% |
| TTATTAAGCATCCTTCATCA+CGG | + | chr1_4:62587645-62587664 | Msa0176280:CDS | 30.0% | |
| GAATTACTCAATTTCTTAGC+AGG | + | chr1_4:62587917-62587936 | Msa0176280:intron | 30.0% | |
| AACTAGTTGTGATGATCTTA+AGG | + | chr1_4:62587940-62587959 | Msa0176280:CDS | 30.0% | |
| GATTAACTGTCATGTACTAA+TGG | + | chr1_4:62588164-62588183 | Msa0176280:intron | 30.0% | |
| !!! | TATGCCCTGATTTTGATTAT+TGG | - | chr1_4:62588404-62588423 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAA+TGG | - | chr1_4:62588427-62588446 | None:intergenic | 30.0% | |
| TTGTTGATCAAGACAAAACA+TGG | + | chr1_4:62588480-62588499 | Msa0176280:CDS | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | + | chr1_4:62588534-62588553 | Msa0176280:CDS | 30.0% | |
| GTAAGTGATCTGATATGAAT+AGG | + | chr1_4:62588849-62588868 | Msa0176280:intron | 30.0% | |
| TAAAACCCTAAATGGATGTA+AGG | + | chr1_4:62588886-62588905 | Msa0176280:intron | 30.0% | |
| AATGAAAGTTAGAGAAGGTT+AGG | + | chr1_4:62589037-62589056 | Msa0176280:intron | 30.0% | |
| AACATTACTCCATTTCCTTA+TGG | + | chr1_4:62589087-62589106 | Msa0176280:intron | 30.0% | |
| ACGATGTAAAACTACTACAA+TGG | - | chr1_4:62589123-62589142 | None:intergenic | 30.0% | |
| AAACGTTCCAATCAATCATA+CGG | + | chr1_4:62589221-62589240 | Msa0176280:intron | 30.0% | |
| ! | TGACTATTGGTTACTATCAT+TGG | - | chr1_4:62589305-62589324 | None:intergenic | 30.0% |
| TCGTCATGAATTAACTATGT+TGG | + | chr1_4:62589384-62589403 | Msa0176280:intron | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | + | chr1_4:62587402-62587421 | Msa0176280:CDS | 30.0% |
| AAACTAGTCATCAAACTGTT+TGG | + | chr1_4:62587429-62587448 | Msa0176280:CDS | 30.0% | |
| ! | CTTCAGTGGTTTCTTTTAAA+GGG | - | chr1_4:62587586-62587605 | None:intergenic | 30.0% |
| ! | TCTTCAGTGGTTTCTTTTAA+AGG | - | chr1_4:62587587-62587606 | None:intergenic | 30.0% |
| TTATTAAGCATCCTTCATCA+CGG | + | chr1_4:62587645-62587664 | Msa0176280:CDS | 30.0% | |
| GAATTACTCAATTTCTTAGC+AGG | + | chr1_4:62587917-62587936 | Msa0176280:intron | 30.0% | |
| AACTAGTTGTGATGATCTTA+AGG | + | chr1_4:62587940-62587959 | Msa0176280:CDS | 30.0% | |
| GATTAACTGTCATGTACTAA+TGG | + | chr1_4:62588164-62588183 | Msa0176280:intron | 30.0% | |
| !!! | TATGCCCTGATTTTGATTAT+TGG | - | chr1_4:62588404-62588423 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAA+TGG | - | chr1_4:62588427-62588446 | None:intergenic | 30.0% | |
| TTGTTGATCAAGACAAAACA+TGG | + | chr1_4:62588480-62588499 | Msa0176280:CDS | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | + | chr1_4:62588534-62588553 | Msa0176280:CDS | 30.0% | |
| GTAAGTGATCTGATATGAAT+AGG | + | chr1_4:62588849-62588868 | Msa0176280:intron | 30.0% | |
| TAAAACCCTAAATGGATGTA+AGG | + | chr1_4:62588886-62588905 | Msa0176280:intron | 30.0% | |
| AATGAAAGTTAGAGAAGGTT+AGG | + | chr1_4:62589037-62589056 | Msa0176280:intron | 30.0% | |
| AACATTACTCCATTTCCTTA+TGG | + | chr1_4:62589087-62589106 | Msa0176280:intron | 30.0% | |
| ACGATGTAAAACTACTACAA+TGG | - | chr1_4:62589123-62589142 | None:intergenic | 30.0% | |
| AAACGTTCCAATCAATCATA+CGG | + | chr1_4:62589221-62589240 | Msa0176280:intron | 30.0% | |
| ! | TGACTATTGGTTACTATCAT+TGG | - | chr1_4:62589305-62589324 | None:intergenic | 30.0% |
| TCGTCATGAATTAACTATGT+TGG | + | chr1_4:62589384-62589403 | Msa0176280:intron | 30.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | - | chr1_4:62587338-62587357 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | - | chr1_4:62587339-62587358 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | + | chr1_4:62587339-62587358 | Msa0176280:CDS | 35.0% |
| !! | TTGGAAGCTTTAGAGTAACT+GGG | - | chr1_4:62587379-62587398 | None:intergenic | 35.0% |
| !! | TTTGGAAGCTTTAGAGTAAC+TGG | - | chr1_4:62587380-62587399 | None:intergenic | 35.0% |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | - | chr1_4:62587398-62587417 | None:intergenic | 35.0% |
| CTCTTTAATGTGATGGTACT+TGG | + | chr1_4:62587536-62587555 | Msa0176280:intron | 35.0% | |
| TTCTTAGAAACTCCAGAAGA+CGG | - | chr1_4:62587698-62587717 | None:intergenic | 35.0% | |
| TGCAAGATTTCGTAATTCCA+AGG | + | chr1_4:62587781-62587800 | Msa0176280:CDS | 35.0% | |
| ATTTCGTAATTCCAAGGATG+TGG | + | chr1_4:62587787-62587806 | Msa0176280:CDS | 35.0% | |
| AGTAGCAACACCTAAAAAGT+AGG | - | chr1_4:62587877-62587896 | None:intergenic | 35.0% | |
| CATGACAGTTAATCTCGTTA+AGG | - | chr1_4:62588158-62588177 | None:intergenic | 35.0% | |
| ATAGATGTACACCTACAAGA+TGG | + | chr1_4:62588262-62588281 | Msa0176280:intron | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | + | chr1_4:62588646-62588665 | Msa0176280:CDS | 35.0% |
| AATTCCACCGTATGATTGAT+TGG | - | chr1_4:62589231-62589250 | None:intergenic | 35.0% | |
| TGAATTAACTATGTTGGTGC+AGG | + | chr1_4:62589390-62589409 | Msa0176280:intron | 35.0% | |
| GAATTAACTATGTTGGTGCA+GGG | + | chr1_4:62589391-62589410 | Msa0176280:intron | 35.0% | |
| AATTAACTATGTTGGTGCAG+GGG | + | chr1_4:62589392-62589411 | Msa0176280:intron | 35.0% | |
| CTCGAATTTGTGACTTGAAA+GGG | + | chr1_4:62589508-62589527 | Msa0176280:intron | 35.0% | |
| TCGAATTTGTGACTTGAAAG+GGG | + | chr1_4:62589509-62589528 | Msa0176280:intron | 35.0% | |
| TATATTGAAGATGGTCGATG+AGG | + | chr1_4:62589542-62589561 | Msa0176280:intron | 35.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | - | chr1_4:62587338-62587357 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | - | chr1_4:62587339-62587358 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | + | chr1_4:62587339-62587358 | Msa0176280:CDS | 35.0% |
| !! | TTGGAAGCTTTAGAGTAACT+GGG | - | chr1_4:62587379-62587398 | None:intergenic | 35.0% |
| !! | TTTGGAAGCTTTAGAGTAAC+TGG | - | chr1_4:62587380-62587399 | None:intergenic | 35.0% |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | - | chr1_4:62587398-62587417 | None:intergenic | 35.0% |
| CTCTTTAATGTGATGGTACT+TGG | + | chr1_4:62587536-62587555 | Msa0176280:intron | 35.0% | |
| TTCTTAGAAACTCCAGAAGA+CGG | - | chr1_4:62587698-62587717 | None:intergenic | 35.0% | |
| TGCAAGATTTCGTAATTCCA+AGG | + | chr1_4:62587781-62587800 | Msa0176280:CDS | 35.0% | |
| ATTTCGTAATTCCAAGGATG+TGG | + | chr1_4:62587787-62587806 | Msa0176280:CDS | 35.0% | |
| AGTAGCAACACCTAAAAAGT+AGG | - | chr1_4:62587877-62587896 | None:intergenic | 35.0% | |
| CATGACAGTTAATCTCGTTA+AGG | - | chr1_4:62588158-62588177 | None:intergenic | 35.0% | |
| ATAGATGTACACCTACAAGA+TGG | + | chr1_4:62588262-62588281 | Msa0176280:intron | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | + | chr1_4:62588646-62588665 | Msa0176280:CDS | 35.0% |
| AATTCCACCGTATGATTGAT+TGG | - | chr1_4:62589231-62589250 | None:intergenic | 35.0% | |
| TGAATTAACTATGTTGGTGC+AGG | + | chr1_4:62589390-62589409 | Msa0176280:intron | 35.0% | |
| GAATTAACTATGTTGGTGCA+GGG | + | chr1_4:62589391-62589410 | Msa0176280:intron | 35.0% | |
| AATTAACTATGTTGGTGCAG+GGG | + | chr1_4:62589392-62589411 | Msa0176280:intron | 35.0% | |
| CTCGAATTTGTGACTTGAAA+GGG | + | chr1_4:62589508-62589527 | Msa0176280:intron | 35.0% | |
| TCGAATTTGTGACTTGAAAG+GGG | + | chr1_4:62589509-62589528 | Msa0176280:intron | 35.0% | |
| TATATTGAAGATGGTCGATG+AGG | + | chr1_4:62589542-62589561 | Msa0176280:intron | 35.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | + | chr1_4:62587333-62587352 | Msa0176280:CDS | 40.0% | |
| !!! | CAAACTGTTTGGTTTTGCGA+TGG | + | chr1_4:62587440-62587459 | Msa0176280:CDS | 40.0% |
| AACCACTGAAGAATACGAAG+AGG | + | chr1_4:62587595-62587614 | Msa0176280:intron | 40.0% | |
| AACCTCTTCGTATTCTTCAG+TGG | - | chr1_4:62587600-62587619 | None:intergenic | 40.0% | |
| TACGAAATCTTGCAAGTGCT+TGG | - | chr1_4:62587775-62587794 | None:intergenic | 40.0% | |
| AATTCCAAGGATGTGGACAA+TGG | + | chr1_4:62587794-62587813 | Msa0176280:CDS | 40.0% | |
| CCAATCACAATCCATCTTGT+AGG | - | chr1_4:62588276-62588295 | None:intergenic | 40.0% | |
| !! | CCTACAAGATGGATTGTGAT+TGG | + | chr1_4:62588273-62588292 | Msa0176280:intron | 40.0% |
| TTGCCAAGAAACATCTGCAT+AGG | + | chr1_4:62588434-62588453 | Msa0176280:intron | 40.0% | |
| CATCCTATGCAGATGTTTCT+TGG | - | chr1_4:62588440-62588459 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATAGGA+TGG | + | chr1_4:62588438-62588457 | Msa0176280:intron | 40.0% | |
| AAACATCTGCATAGGATGGA+AGG | + | chr1_4:62588442-62588461 | Msa0176280:intron | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | - | chr1_4:62588643-62588662 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | + | chr1_4:62588640-62588659 | Msa0176280:CDS | 40.0% |
| !! | ATGAGCACTCCCTATTTTGA+AGG | + | chr1_4:62588671-62588690 | Msa0176280:CDS | 40.0% |
| GTGCTAGATACTCTCAATGT+TGG | + | chr1_4:62589485-62589504 | Msa0176280:intron | 40.0% | |
| GCTCGAATTTGTGACTTGAA+AGG | + | chr1_4:62589507-62589526 | Msa0176280:intron | 40.0% | |
| CGAATTTGTGACTTGAAAGG+GGG | + | chr1_4:62589510-62589529 | Msa0176280:intron | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | + | chr1_4:62587333-62587352 | Msa0176280:CDS | 40.0% | |
| !!! | CAAACTGTTTGGTTTTGCGA+TGG | + | chr1_4:62587440-62587459 | Msa0176280:CDS | 40.0% |
| AACCACTGAAGAATACGAAG+AGG | + | chr1_4:62587595-62587614 | Msa0176280:intron | 40.0% | |
| AACCTCTTCGTATTCTTCAG+TGG | - | chr1_4:62587600-62587619 | None:intergenic | 40.0% | |
| TACGAAATCTTGCAAGTGCT+TGG | - | chr1_4:62587775-62587794 | None:intergenic | 40.0% | |
| AATTCCAAGGATGTGGACAA+TGG | + | chr1_4:62587794-62587813 | Msa0176280:CDS | 40.0% | |
| CCAATCACAATCCATCTTGT+AGG | - | chr1_4:62588276-62588295 | None:intergenic | 40.0% | |
| !! | CCTACAAGATGGATTGTGAT+TGG | + | chr1_4:62588273-62588292 | Msa0176280:intron | 40.0% |
| TTGCCAAGAAACATCTGCAT+AGG | + | chr1_4:62588434-62588453 | Msa0176280:intron | 40.0% | |
| CATCCTATGCAGATGTTTCT+TGG | - | chr1_4:62588440-62588459 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATAGGA+TGG | + | chr1_4:62588438-62588457 | Msa0176280:intron | 40.0% | |
| AAACATCTGCATAGGATGGA+AGG | + | chr1_4:62588442-62588461 | Msa0176280:intron | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | - | chr1_4:62588643-62588662 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | + | chr1_4:62588640-62588659 | Msa0176280:CDS | 40.0% |
| !! | ATGAGCACTCCCTATTTTGA+AGG | + | chr1_4:62588671-62588690 | Msa0176280:CDS | 40.0% |
| GTGCTAGATACTCTCAATGT+TGG | + | chr1_4:62589485-62589504 | Msa0176280:intron | 40.0% | |
| GCTCGAATTTGTGACTTGAA+AGG | + | chr1_4:62589507-62589526 | Msa0176280:intron | 40.0% | |
| CGAATTTGTGACTTGAAAGG+GGG | + | chr1_4:62589510-62589529 | Msa0176280:intron | 40.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | + | chr1_4:62587344-62587363 | Msa0176280:CDS | 45.0% |
| !!! | CTGTTTGGTTTTGCGATGGT+TGG | + | chr1_4:62587444-62587463 | Msa0176280:CDS | 45.0% |
| GTGATGGTACTTGGCAAATG+CGG | + | chr1_4:62587545-62587564 | Msa0176280:intron | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr1_4:62587683-62587702 | None:intergenic | 45.0% |
| AAATCTCCATCACCGTCTTC+TGG | + | chr1_4:62587683-62587702 | Msa0176280:CDS | 45.0% | |
| CGTTCCAATCAATCATACGG+TGG | + | chr1_4:62589224-62589243 | Msa0176280:intron | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | + | chr1_4:62587344-62587363 | Msa0176280:CDS | 45.0% |
| !!! | CTGTTTGGTTTTGCGATGGT+TGG | + | chr1_4:62587444-62587463 | Msa0176280:CDS | 45.0% |
| GTGATGGTACTTGGCAAATG+CGG | + | chr1_4:62587545-62587564 | Msa0176280:intron | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr1_4:62587683-62587702 | None:intergenic | 45.0% |
| AAATCTCCATCACCGTCTTC+TGG | + | chr1_4:62587683-62587702 | Msa0176280:CDS | 45.0% | |
| CGTTCCAATCAATCATACGG+TGG | + | chr1_4:62589224-62589243 | Msa0176280:intron | 45.0% | |
| !!! | ATTTATTTTTTCTATTTTTT+TGG | + | chr1_4:62587850-62587869 | Msa0176280:intron | 5.0% |
| !!! | ATTTATTTTTTCTATTTTTT+TGG | + | chr1_4:62587850-62587869 | Msa0176280:intron | 5.0% |
| ! | CTTTTACCTCGCCGTGATGA+AGG | - | chr1_4:62587659-62587678 | None:intergenic | 50.0% |
| CTTCATCACGGCGAGGTAAA+AGG | + | chr1_4:62587657-62587676 | Msa0176280:CDS | 50.0% | |
| GAAACTCCAGAAGACGGTGA+TGG | - | chr1_4:62587692-62587711 | None:intergenic | 50.0% | |
| CCAACCATTGTCCACATCCT+TGG | - | chr1_4:62587801-62587820 | None:intergenic | 50.0% | |
| CCAAGGATGTGGACAATGGT+TGG | + | chr1_4:62587798-62587817 | Msa0176280:intron | 50.0% | |
| CATCTGCATAGGATGGAAGG+AGG | + | chr1_4:62588445-62588464 | Msa0176280:intron | 50.0% | |
| GCATAGGATGGAAGGAGGAA+AGG | + | chr1_4:62588450-62588469 | Msa0176280:intron | 50.0% | |
| ! | CTTTTACCTCGCCGTGATGA+AGG | - | chr1_4:62587659-62587678 | None:intergenic | 50.0% |
| CTTCATCACGGCGAGGTAAA+AGG | + | chr1_4:62587657-62587676 | Msa0176280:CDS | 50.0% | |
| GAAACTCCAGAAGACGGTGA+TGG | - | chr1_4:62587692-62587711 | None:intergenic | 50.0% | |
| CCAACCATTGTCCACATCCT+TGG | - | chr1_4:62587801-62587820 | None:intergenic | 50.0% | |
| CCAAGGATGTGGACAATGGT+TGG | + | chr1_4:62587798-62587817 | Msa0176280:intron | 50.0% | |
| CATCTGCATAGGATGGAAGG+AGG | + | chr1_4:62588445-62588464 | Msa0176280:intron | 50.0% | |
| GCATAGGATGGAAGGAGGAA+AGG | + | chr1_4:62588450-62588469 | Msa0176280:intron | 50.0% | |
| AAGCATCCTTCATCACGGCG+AGG | + | chr1_4:62587650-62587669 | Msa0176280:CDS | 55.0% | |
| AAGCATCCTTCATCACGGCG+AGG | + | chr1_4:62587650-62587669 | Msa0176280:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62587329 | 62589617 | 62587329 | ID=Msa0176280;Name=Msa0176280 |
| chr1_4 | mRNA | 62587329 | 62589617 | 62587329 | ID=Msa0176280-mRNA-1;Parent=Msa0176280;Name=Msa0176280-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.8|0.25|0.2|5|0|264 |
| chr1_4 | exon | 62587329 | 62587550 | 62587329 | ID=Msa0176280-mRNA-1:exon:20166;Parent=Msa0176280-mRNA-1 |
| chr1_4 | exon | 62587626 | 62587815 | 62587626 | ID=Msa0176280-mRNA-1:exon:20167;Parent=Msa0176280-mRNA-1 |
| chr1_4 | exon | 62587939 | 62588066 | 62587939 | ID=Msa0176280-mRNA-1:exon:20168;Parent=Msa0176280-mRNA-1 |
| chr1_4 | exon | 62588464 | 62588692 | 62588464 | ID=Msa0176280-mRNA-1:exon:20169;Parent=Msa0176280-mRNA-1 |
| chr1_4 | exon | 62589592 | 62589617 | 62589592 | ID=Msa0176280-mRNA-1:exon:20170;Parent=Msa0176280-mRNA-1 |
| chr1_4 | CDS | 62587329 | 62587550 | 62587329 | ID=Msa0176280-mRNA-1:cds;Parent=Msa0176280-mRNA-1 |
| chr1_4 | CDS | 62587626 | 62587815 | 62587626 | ID=Msa0176280-mRNA-1:cds;Parent=Msa0176280-mRNA-1 |
| chr1_4 | CDS | 62587939 | 62588066 | 62587939 | ID=Msa0176280-mRNA-1:cds;Parent=Msa0176280-mRNA-1 |
| chr1_4 | CDS | 62588464 | 62588692 | 62588464 | ID=Msa0176280-mRNA-1:cds;Parent=Msa0176280-mRNA-1 |
| chr1_4 | CDS | 62589592 | 62589617 | 62589592 | ID=Msa0176280-mRNA-1:cds;Parent=Msa0176280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
