AlfalfaGEDB | Msa0178750

M. sativa cultivar zhongmu-4 / Msa0178750

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178750	sp\|O48686\|SNL3_ARATH	43.434	99	43	3	126	224	1	86	1.98e-12	69.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178750	A0A2K3LHE5	37.013	154	78	4	83	226	8	152	2.07e-17	86.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0178750	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178750	MtrunA17_Chr8g0364231	36.885	122	65	3	103	224	7	116	1.01e-14	72.8
Msa0178750	MtrunA17_Chr1g0206781	54.167	72	24	2	142	213	12	74	1.70e-14	67.8
Msa0178750	MtrunA17_Chr1g0205811	43.333	90	39	3	141	227	14	94	6.97e-14	66.2
Msa0178750	MtrunA17_Chr5g0415031	43.529	85	39	1	140	224	42	117	4.67e-13	68.2
Msa0178750	MtrunA17_Chr1g0206771	45.122	82	36	2	142	223	17	89	6.94e-13	64.7
Msa0178750	MtrunA17_Chr1g0206771	48.649	74	29	2	141	214	95	159	4.41e-11	59.7
Msa0178750	MtrunA17_Chr3g0077941	45.977	87	37	2	140	225	97	174	1.64e-12	63.5
Msa0178750	MtrunA17_Chr1g0205821	37.647	85	44	1	142	226	100	175	3.50e-12	62.8
Msa0178750	MtrunA17_Chr3g0077891	42.529	87	40	2	140	225	98	175	2.06e-11	60.8
Msa0178750	MtrunA17_Chr1g0205861	39.241	79	39	1	140	218	15	84	3.83e-11	58.5

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178750	AT1G24190.3	43.434	99	43	3	126	224	1	86	1.95e-13	69.7
Msa0178750	AT1G24190.1	43.434	99	43	3	126	224	1	86	2.01e-13	69.3
Msa0178750	AT1G24190.2	43.434	99	43	3	126	224	1	86	2.09e-13	69.3
Msa0178750	AT1G70060.2	43.434	99	43	3	126	224	1	86	6.70e-13	67.8
Msa0178750	AT1G70060.1	43.434	99	43	3	126	224	1	86	6.70e-13	67.8
Msa0178750	AT1G24200.1	45.238	84	37	1	140	223	13	87	1.09e-12	65.1
Msa0178750	AT1G59890.1	36.885	122	66	2	103	224	7	117	5.94e-12	65.1
Msa0178750	AT1G59890.2	36.885	122	66	2	103	224	7	117	6.00e-12	65.1
Msa0178750	AT1G59890.3	36.885	122	66	2	103	224	7	117	6.05e-12	65.1
Msa0178750	AT1G59890.4	36.885	122	66	2	103	224	7	117	7.02e-12	65.1

Showing 1 to 10 of 10 entries

Previous1Next

Find 54 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTAGATCGAGTAGT+AGG	0.418518	1_4:+66146744	None:intergenic
AAAATTCATTAAGGATTACC+AGG	0.537203	1_4:-66146104	Msa0178750:CDS
AAATACTCGTCATGCCTTTC+AGG	0.145655	1_4:+66146061	None:intergenic
AACCCCACCTGGATAATCTG+AGG	0.644843	1_4:+66148323	None:intergenic
AAGAAGGTCGTGTTTCTGAT+CGG	0.592690	1_4:+66148464	None:intergenic
AAGGTCGTGTTTCTGATCGG+AGG	0.688366	1_4:+66148467	None:intergenic
AATGATAAATTACTAACCAG+TGG	0.651186	1_4:+66145922	None:intergenic
AATTACTAACCAGTGGTCTC+AGG	0.492768	1_4:+66145929	None:intergenic
ACGACCTTCTTCCTTTCTCC+AGG	0.463722	1_4:-66148452	Msa0178750:CDS
ACTTGGGTTTGGCAGCTCGC+GGG	0.481398	1_4:+66146246	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTTACTAATTCATGGAATC+TGG	+	chr1_4:66146193-66146212	None:intergenic	30.0%
TATTCTCTTTGTTAGCTCAT+AGG	+	chr1_4:66146343-66146362	None:intergenic	30.0%
TAACAAAGAGAATAAGCTCT+AGG	-	chr1_4:66146349-66146368	Msa0178750:intron	30.0%
TTTGAGAAAGACAACATTGA+AGG	+	chr1_4:66146439-66146458	None:intergenic	30.0%
TAGACCTTCATAAAAATGAG+TGG	-	chr1_4:66146512-66146531	Msa0178750:intron	30.0%
AGACCTTCATAAAAATGAGT+GGG	-	chr1_4:66146513-66146532	Msa0178750:intron	30.0%
GTTTGATTGAGTTCATAGAA+TGG	-	chr1_4:66146721-66146740	Msa0178750:intron	30.0%
ATAAAAGACACCTTCACAAA+AGG	+	chr1_4:66147350-66147369	None:intergenic	30.0%
ACACCTTCATAAAAGTAAGT+TGG	+	chr1_4:66147405-66147424	None:intergenic	30.0%
AAAGTGAAAATCACACCTTA+AGG	-	chr1_4:66147447-66147466	Msa0178750:intron	30.0%

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	66145934	66148524	66145934	ID=Msa0178750;Name=Msa0178750
chr1_4	mRNA	66145934	66148524	66145934	ID=Msa0178750-mRNA-1;Parent=Msa0178750;Name=Msa0178750-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0\|0.5\|0\|0.66\|1\|1\|3\|0\|227
chr1_4	exon	66148331	66148524	66148331	ID=Msa0178750-mRNA-1:exon:21606;Parent=Msa0178750-mRNA-1
chr1_4	exon	66146739	66146893	66146739	ID=Msa0178750-mRNA-1:exon:21605;Parent=Msa0178750-mRNA-1
chr1_4	exon	66145934	66146268	66145934	ID=Msa0178750-mRNA-1:exon:21604;Parent=Msa0178750-mRNA-1
chr1_4	CDS	66148331	66148524	66148331	ID=Msa0178750-mRNA-1:cds;Parent=Msa0178750-mRNA-1
chr1_4	CDS	66146739	66146893	66146739	ID=Msa0178750-mRNA-1:cds;Parent=Msa0178750-mRNA-1
chr1_4	CDS	66145934	66146268	66145934	ID=Msa0178750-mRNA-1:cds;Parent=Msa0178750-mRNA-1

Gene Sequence

>Msa0178750

ATGCTTCCGGTGCCGCCGTGGATGTTTCAGCTTTGCCTCCGATCAGAAACACGACCTTCTTCCTTTCTCCAGGCATCGTTGTCGTCACACATAAAAATCGCGACTTTCTTCAACCTCTGCTTTAAAACGCGTGTTAGTTTCGGCCACCGTCGGCACCGCCGCTGGATATTGCAGCTCCTCCTCAGATTATCCAGCTTACGAGATCTGGATCCTCATTATACGCCTTTGAATTCATGCGATCCTCATTATACGCCTTTGAATTCATGCGATTTGAGAGGAAATTCAATTGGTGGAGACACAGCTTTTGAATGCTTCGTCTCTCCTACTACTCGATCTACTCTTTTTATAGCCCGCGAGCTGCCAAACCCAAGTGCAATGGTATGCTTCTCGTCCTCCTTGAAGATCCTCCGAAATGACAATGATGCCTTGGCGTATCTTAAGGCAGTCAAAGTTGAATTTCAATATAACACGAAAAAGTATAATGAGTTTTTAAAATTCATTAAGGATTACCAGGTTAGAATAATTCGTATAAGTCCTGAAAGGCATGACGAGTATTTAAACCTGGTCAAAGCAAGAGTAATGAAGCTGCTTAAAGAGCATACAAGTTTAATTTTGGGATTCAACATCTTTCTGCCAAAGCAAAATCATTTCACGCTTCCATATCAACCTGAGACCACTGGTTAG

Protein sequence

>Msa0178750

MLPVPPWMFQLCLRSETRPSSFLQASLSSHIKIATFFNLCFKTRVSFGHRRHRRWILQLLLRLSSLRDLDPHYTPLNSCDPHYTPLNSCDLRGNSIGGDTAFECFVSPTTRSTLFIARELPNPSAMVCFSSSLKILRNDNDALAYLKAVKVEFQYNTKKYNEFLKFIKDYQVRIIRISPERHDEYLNLVKARVMKLLKEHTSLILGFNIFLPKQNHFTLPYQPETTG*