Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178910 | XP_003592583.3 | 88.542 | 288 | 13 | 2 | 1 | 268 | 195 | 482 | 0.0 | 529 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178910 | sp|Q851W5|Y3204_ORYSJ | 26.829 | 287 | 153 | 11 | 27 | 270 | 246 | 518 | 1.29e-16 | 82.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178910 | G7IAW3 | 88.542 | 288 | 13 | 2 | 1 | 268 | 174 | 461 | 0.0 | 529 |
Gene ID | Type | Classification |
---|---|---|
Msa0178910 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178910 | MtrunA17_Chr1g0208771 | 88.542 | 288 | 13 | 2 | 1 | 268 | 174 | 461 | 0.0 | 529 |
Msa0178910 | MtrunA17_Chr8g0390841 | 57.329 | 307 | 88 | 5 | 3 | 268 | 217 | 521 | 1.87e-112 | 333 |
Msa0178910 | MtrunA17_Chr1g0163071 | 41.593 | 113 | 52 | 2 | 17 | 116 | 187 | 298 | 3.30e-22 | 94.0 |
Msa0178910 | MtrunA17_Chr1g0163181 | 26.207 | 290 | 163 | 10 | 4 | 268 | 169 | 432 | 5.35e-18 | 83.2 |
Msa0178910 | MtrunA17_Chr3g0103171 | 39.394 | 132 | 74 | 3 | 134 | 264 | 139 | 265 | 7.68e-17 | 78.2 |
Msa0178910 | MtrunA17_Chr3g0103161 | 38.053 | 113 | 65 | 3 | 152 | 263 | 14 | 122 | 2.36e-15 | 70.9 |
Msa0178910 | MtrunA17_Chr3g0131891 | 36.667 | 120 | 51 | 3 | 10 | 105 | 185 | 303 | 3.27e-14 | 71.6 |
Msa0178910 | MtrunA17_Chr4g0033961 | 33.846 | 130 | 68 | 3 | 5 | 116 | 270 | 399 | 7.16e-14 | 71.2 |
Msa0178910 | MtrunA17_Chr7g0233561 | 33.871 | 124 | 55 | 3 | 8 | 105 | 190 | 312 | 2.21e-13 | 69.3 |
Msa0178910 | MtrunA17_Chr3g0103181 | 29.358 | 218 | 124 | 7 | 71 | 264 | 68 | 279 | 5.48e-13 | 67.4 |
Msa0178910 | MtrunA17_Chr7g0233531 | 34.426 | 122 | 55 | 4 | 8 | 105 | 143 | 263 | 8.06e-13 | 67.0 |
Msa0178910 | MtrunA17_Chr7g0233541 | 32.787 | 122 | 56 | 3 | 9 | 105 | 160 | 280 | 8.37e-13 | 67.4 |
Msa0178910 | MtrunA17_Chr1g0162441 | 32.558 | 129 | 65 | 6 | 5 | 113 | 274 | 400 | 6.54e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178910 | AT3G18990.1 | 34.959 | 123 | 59 | 5 | 5 | 108 | 219 | 339 | 3.24e-12 | 66.2 |
Msa0178910 | AT3G18990.2 | 34.146 | 123 | 60 | 5 | 5 | 108 | 219 | 339 | 1.02e-11 | 65.1 |
Msa0178910 | AT1G49480.3 | 33.871 | 124 | 59 | 6 | 5 | 108 | 104 | 224 | 2.15e-11 | 62.8 |
Msa0178910 | AT1G49480.3 | 38.384 | 99 | 54 | 3 | 170 | 265 | 127 | 221 | 4.85e-11 | 61.6 |
Msa0178910 | AT1G49480.1 | 33.871 | 124 | 59 | 6 | 5 | 108 | 104 | 224 | 2.15e-11 | 62.8 |
Msa0178910 | AT1G49480.1 | 38.384 | 99 | 54 | 3 | 170 | 265 | 127 | 221 | 4.85e-11 | 61.6 |
Msa0178910 | AT1G49480.2 | 33.871 | 124 | 59 | 6 | 5 | 108 | 104 | 224 | 2.15e-11 | 62.8 |
Msa0178910 | AT1G49480.2 | 38.384 | 99 | 54 | 3 | 170 | 265 | 127 | 221 | 4.85e-11 | 61.6 |
Msa0178910 | AT4G31690.1 | 25.339 | 221 | 142 | 6 | 37 | 254 | 32 | 232 | 3.39e-11 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGATAATAATTTGAAAT+TGG | 0.143719 | 1_4:-66340213 | Msa0178910:CDS |
CTCAAATTGATAGTGAAATT+TGG | 0.167485 | 1_4:+66339539 | None:intergenic |
TATCATGACAGCAGTGAAAA+AGG | 0.253877 | 1_4:+66340517 | None:intergenic |
CCTTCACCCAACTTTGTTGC+TGG | 0.270614 | 1_4:+66339218 | None:intergenic |
TGCTATTGATCATCTCAAAA+AGG | 0.283820 | 1_4:+66340180 | None:intergenic |
ACCCAACTTTGTTGCTGGTT+CGG | 0.316172 | 1_4:+66339223 | None:intergenic |
CGAAATCGCCCTTCAGGTCT+TGG | 0.340066 | 1_4:-66340303 | Msa0178910:CDS |
TCAATTTGAGATCAAGTCAT+TGG | 0.345291 | 1_4:-66339526 | Msa0178910:CDS |
TCTGATAATAATTTGAAATT+GGG | 0.355411 | 1_4:-66340212 | Msa0178910:CDS |
GACTGCAATGTTACAGTTTG+AGG | 0.362858 | 1_4:-66339282 | Msa0178910:CDS |
TTCATTCTCGAGCAAGTACT+TGG | 0.373540 | 1_4:-66339318 | Msa0178910:CDS |
GCAAAGCGAAATCGCCCTTC+AGG | 0.399129 | 1_4:-66340309 | Msa0178910:CDS |
TGTAGAAGAAAATAAATTGC+AGG | 0.404615 | 1_4:-66339183 | Msa0178910:CDS |
AAGCACAACATCTTCCTTGT+TGG | 0.409928 | 1_4:+66339133 | None:intergenic |
CAAAGTGGATGTGAATTGAT+TGG | 0.417163 | 1_4:+66339568 | None:intergenic |
AACTTTGTTGCTGGTTCGGA+TGG | 0.454779 | 1_4:+66339227 | None:intergenic |
TCCGAACCAGCAACAAAGTT+GGG | 0.458098 | 1_4:-66339224 | Msa0178910:CDS |
CAATCAATTCACATCCACTT+TGG | 0.477065 | 1_4:-66339567 | Msa0178910:CDS |
TCTTGGATGATGAGAGAACT+TGG | 0.477954 | 1_4:-66340286 | Msa0178910:CDS |
TTTGAATCAGTTCATGGAGA+TGG | 0.482390 | 1_4:-66340014 | Msa0178910:intron |
TTCATGGAGATGGAATTAAC+TGG | 0.486836 | 1_4:-66340004 | Msa0178910:CDS |
CAATTTGAGATCAAGTCATT+GGG | 0.501131 | 1_4:-66339525 | Msa0178910:CDS |
TTGGATTACCTTGTGGTGGA+AGG | 0.508508 | 1_4:+66340105 | None:intergenic |
ATCCGAACCAGCAACAAAGT+TGG | 0.508654 | 1_4:-66339225 | Msa0178910:CDS |
GGATAATACATCACTTGTAC+AGG | 0.514406 | 1_4:+66339248 | None:intergenic |
AATTAGTACTTTAAAAGCAT+AGG | 0.530987 | 1_4:+66340154 | None:intergenic |
TCTCATCATCCAAGACCTGA+AGG | 0.534348 | 1_4:+66340294 | None:intergenic |
CAACAAAGTTGGGTGAAGGT+TGG | 0.542982 | 1_4:-66339214 | Msa0178910:CDS |
TGGATTACCTTGTGGTGGAA+GGG | 0.545050 | 1_4:+66340106 | None:intergenic |
GAAGAAAATAAATTGCAGGC+TGG | 0.548366 | 1_4:-66339179 | Msa0178910:CDS |
AACTCAAAGAAATTCACTGC+AGG | 0.555404 | 1_4:-66339633 | Msa0178910:CDS |
ATTAACTGGTTAGAAACTGC+AGG | 0.556059 | 1_4:-66339990 | Msa0178910:CDS |
AAAGAAATTCACTGCAGGCT+AGG | 0.559813 | 1_4:-66339628 | Msa0178910:CDS |
CATCTTGGATTACCTTGTGG+TGG | 0.585751 | 1_4:+66340101 | None:intergenic |
TCATTGGGATATTTACAGAC+CGG | 0.589422 | 1_4:-66339510 | Msa0178910:intron |
TTCATATGTTAATCAATACA+TGG | 0.607228 | 1_4:-66340492 | Msa0178910:intron |
CTCATCATCCAAGACCTGAA+GGG | 0.610171 | 1_4:+66340295 | None:intergenic |
CCAGCAACAAAGTTGGGTGA+AGG | 0.622086 | 1_4:-66339218 | Msa0178910:CDS |
TCATTCTCGAGCAAGTACTT+GGG | 0.630141 | 1_4:-66339317 | Msa0178910:CDS |
CAACATTCCCTTCCACCACA+AGG | 0.632695 | 1_4:-66340113 | Msa0178910:intron |
TGAAGCATGGTCAAGAGCAG+AGG | 0.641697 | 1_4:-66340601 | None:intergenic |
TTGGCATACCTCAGGAACGA+AGG | 0.641759 | 1_4:-66339657 | Msa0178910:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATAATAATAGAACT+GGG | + | chr1_4:66340107-66340126 | None:intergenic | 10.0% |
!! | AATAATAATAATAATAGAAC+TGG | + | chr1_4:66340108-66340127 | None:intergenic | 10.0% |
!!! | ACTTTTGTTCAAAATTTAAA+GGG | + | chr1_4:66338220-66338239 | None:intergenic | 15.0% |
!!! | TACTTTTGTTCAAAATTTAA+AGG | + | chr1_4:66338221-66338240 | None:intergenic | 15.0% |
!!! | ATCTGATAATAATTTGAAAT+TGG | - | chr1_4:66338349-66338368 | Msa0178910:intron | 15.0% |
!!! | TCTGATAATAATTTGAAATT+GGG | - | chr1_4:66338350-66338369 | Msa0178910:intron | 15.0% |
!! | AAGATTACTAATAACTTTAA+GGG | + | chr1_4:66338493-66338512 | None:intergenic | 15.0% |
!! | AAAGATTACTAATAACTTTA+AGG | + | chr1_4:66338494-66338513 | None:intergenic | 15.0% |
!!! | TAAAGTTATTAGTAATCTTT+TGG | - | chr1_4:66338494-66338513 | Msa0178910:intron | 15.0% |
!!! | TAATACAAAATGTTGTTTAA+TGG | - | chr1_4:66338746-66338765 | Msa0178910:intron | 15.0% |
!! | TACTAGTATTTGAAAAATTT+AGG | + | chr1_4:66339644-66339663 | None:intergenic | 15.0% |
!!! | ATGTTTTAAAAGAAAAATGA+AGG | + | chr1_4:66339978-66339997 | None:intergenic | 15.0% |
!! | TAATAATAATAATAGAACTG+GGG | + | chr1_4:66340106-66340125 | None:intergenic | 15.0% |
!! | TTCATATGTTAATCAATACA+TGG | - | chr1_4:66338070-66338089 | Msa0178910:intron | 20.0% |
!!! | TTTTGAACAAAAGTATTTGA+AGG | - | chr1_4:66338226-66338245 | Msa0178910:intron | 20.0% |
!!! | AATTAGTACTTTAAAAGCAT+AGG | + | chr1_4:66338411-66338430 | None:intergenic | 20.0% |
!! | AAAACTATTATGTCGTATAA+AGG | - | chr1_4:66338614-66338633 | Msa0178910:intron | 20.0% |
!!! | AATTGATTATATGCTTTTGT+TGG | - | chr1_4:66338886-66338905 | Msa0178910:intron | 20.0% |
!! | AATCACTAGATATATGTATT+TGG | + | chr1_4:66339106-66339125 | None:intergenic | 20.0% |
!! | AATAAATCTTTGCATAATTG+CGG | + | chr1_4:66339509-66339528 | None:intergenic | 20.0% |
!! | GAATCAAATATATTGAAAGA+TGG | - | chr1_4:66339735-66339754 | Msa0178910:intron | 20.0% |
!! | AAAACTTGATATATAACAAC+AGG | - | chr1_4:66339855-66339874 | Msa0178910:intron | 20.0% |
! | TGTATGAGAAAAATTAGTAG+CGG | - | chr1_4:66338311-66338330 | Msa0178910:intron | 25.0% |
!!! | CTCAAATTGATAGTGAAATT+TGG | + | chr1_4:66339026-66339045 | None:intergenic | 25.0% |
! | CATAAATACATATTCCTTAC+CGG | + | chr1_4:66339074-66339093 | None:intergenic | 25.0% |
!! | GTTTCTTTTACAGTTAGTTA+GGG | + | chr1_4:66339199-66339218 | None:intergenic | 25.0% |
!! | TGTTTCTTTTACAGTTAGTT+AGG | + | chr1_4:66339200-66339219 | None:intergenic | 25.0% |
! | TGTAGAAGAAAATAAATTGC+AGG | - | chr1_4:66339379-66339398 | Msa0178910:intron | 25.0% |
! | CAGATAAAATTGACCTTATA+TGG | - | chr1_4:66339550-66339569 | Msa0178910:CDS | 25.0% |
! | GGACTAATAAATACCATATA+AGG | + | chr1_4:66339566-66339585 | None:intergenic | 25.0% |
! | ATGAACTATCTTCTAGATTT+GGG | + | chr1_4:66339587-66339606 | None:intergenic | 25.0% |
! | TATGAACTATCTTCTAGATT+TGG | + | chr1_4:66339588-66339607 | None:intergenic | 25.0% |
! | AAATCTAGAAGATAGTTCAT+AGG | - | chr1_4:66339587-66339606 | Msa0178910:CDS | 25.0% |
!! | TTCATAGGTTTGAATACTTT+TGG | - | chr1_4:66339602-66339621 | Msa0178910:CDS | 25.0% |
!!! | TCAAAACAGTTTTAGGAATA+TGG | + | chr1_4:66339927-66339946 | None:intergenic | 25.0% |
! | ATTTCAAGCATCATCTAAAT+TGG | + | chr1_4:66339955-66339974 | None:intergenic | 25.0% |
CAAAATTTAAAGGGACATAC+TGG | + | chr1_4:66338211-66338230 | None:intergenic | 30.0% | |
TGCTATTGATCATCTCAAAA+AGG | + | chr1_4:66338385-66338404 | None:intergenic | 30.0% | |
TTCAACTTCAAATTCCCAAA+GGG | + | chr1_4:66338666-66338685 | None:intergenic | 30.0% | |
ATTCAACTTCAAATTCCCAA+AGG | + | chr1_4:66338667-66338686 | None:intergenic | 30.0% | |
! | CTTAGCTTCAGAATTTTTGA+AGG | + | chr1_4:66338967-66338986 | None:intergenic | 30.0% |
!!! | GAAATTTGGTTTTTCCAAAG+TGG | + | chr1_4:66339012-66339031 | None:intergenic | 30.0% |
! | TCAATTTGAGATCAAGTCAT+TGG | - | chr1_4:66339036-66339055 | Msa0178910:intron | 30.0% |
! | CAATTTGAGATCAAGTCATT+GGG | - | chr1_4:66339037-66339056 | Msa0178910:intron | 30.0% |
CTAGTGATTATGCTTAAAAC+TGG | - | chr1_4:66339117-66339136 | Msa0178910:CDS | 30.0% | |
! | AACATTGCAGTCTTCTTTTT+GGG | + | chr1_4:66339272-66339291 | None:intergenic | 30.0% |
! | TAACATTGCAGTCTTCTTTT+TGG | + | chr1_4:66339273-66339292 | None:intergenic | 30.0% |
TACAGTTTGAGGAAAAATTG+TGG | - | chr1_4:66339291-66339310 | Msa0178910:CDS | 30.0% | |
! | CTTGATGTTCATATTTTCAG+AGG | - | chr1_4:66339449-66339468 | Msa0178910:intron | 30.0% |
! | GTCAATTTTATCTGTTGCAT+TGG | + | chr1_4:66339544-66339563 | None:intergenic | 30.0% |
!!! | CTTGTGACATGTTATTTTCT+TGG | - | chr1_4:66339706-66339725 | Msa0178910:intron | 30.0% |
!!! | AAGTTTTGTTTCTAGCTTTC+CGG | + | chr1_4:66339842-66339861 | None:intergenic | 30.0% |
!!! | AACAGTTTTAGGAATATGGA+AGG | + | chr1_4:66339923-66339942 | None:intergenic | 30.0% |
! | GGTAGAATCAAAACAGTTTT+AGG | + | chr1_4:66339934-66339953 | None:intergenic | 30.0% |
!! | TACTGATTTCACAAAAGTAG+TGG | + | chr1_4:66340051-66340070 | None:intergenic | 30.0% |
ATCATGACAGCAGTGAAAAA+GGG | + | chr1_4:66338047-66338066 | None:intergenic | 35.0% | |
TATCATGACAGCAGTGAAAA+AGG | + | chr1_4:66338048-66338067 | None:intergenic | 35.0% | |
! | TGAGAAAAATTAGTAGCGGA+TGG | - | chr1_4:66338315-66338334 | Msa0178910:intron | 35.0% |
! | CTTTAAGGGAAAAACCATCT+TGG | + | chr1_4:66338479-66338498 | None:intergenic | 35.0% |
TCATCCTTTGAATCAGTTCA+TGG | - | chr1_4:66338542-66338561 | Msa0178910:intron | 35.0% | |
! | ATCTCCATGAACTGATTCAA+AGG | + | chr1_4:66338549-66338568 | None:intergenic | 35.0% |
TTTGAATCAGTTCATGGAGA+TGG | - | chr1_4:66338548-66338567 | Msa0178910:intron | 35.0% | |
TTCATGGAGATGGAATTAAC+TGG | - | chr1_4:66338558-66338577 | Msa0178910:intron | 35.0% | |
ATTAACTGGTTAGAAACTGC+AGG | - | chr1_4:66338572-66338591 | Msa0178910:intron | 35.0% | |
ATCAAGCAGTATTGTCAAGA+TGG | - | chr1_4:66338685-66338704 | Msa0178910:intron | 35.0% | |
CGTGAGTCGTAAAAAAATAG+AGG | + | chr1_4:66338795-66338814 | None:intergenic | 35.0% | |
AACTCAAAGAAATTCACTGC+AGG | - | chr1_4:66338929-66338948 | Msa0178910:intron | 35.0% | |
!! | TCAGAATTTTTGAAGGAGCA+TGG | + | chr1_4:66338960-66338979 | None:intergenic | 35.0% |
CAAAGTGGATGTGAATTGAT+TGG | + | chr1_4:66338997-66339016 | None:intergenic | 35.0% | |
CAATCAATTCACATCCACTT+TGG | - | chr1_4:66338995-66339014 | Msa0178910:intron | 35.0% | |
TCATTGGGATATTTACAGAC+CGG | - | chr1_4:66339052-66339071 | Msa0178910:intron | 35.0% | |
GATTATGCTTAAAACTGGAG+TGG | - | chr1_4:66339122-66339141 | Msa0178910:CDS | 35.0% | |
GGATAATACATCACTTGTAC+AGG | + | chr1_4:66339317-66339336 | None:intergenic | 35.0% | |
GAAGAAAATAAATTGCAGGC+TGG | - | chr1_4:66339383-66339402 | Msa0178910:intron | 35.0% | |
! | ATCTGTTGCATTGGTATGTA+AGG | + | chr1_4:66339535-66339554 | None:intergenic | 35.0% |
!! | GTTTGAATACTTTTGGCTGT+AGG | - | chr1_4:66339609-66339628 | Msa0178910:CDS | 35.0% |
ACTAGTATGCATTATGTTGC+TGG | - | chr1_4:66339657-66339676 | Msa0178910:intron | 35.0% | |
TCTTGGATGATGAGAGAACT+TGG | - | chr1_4:66338276-66338295 | Msa0178910:intron | 40.0% | |
AACCATCTTGGATTACCTTG+TGG | + | chr1_4:66338467-66338486 | None:intergenic | 40.0% | |
AAAGAAATTCACTGCAGGCT+AGG | - | chr1_4:66338934-66338953 | Msa0178910:intron | 40.0% | |
TTCATTCTCGAGCAAGTACT+TGG | - | chr1_4:66339244-66339263 | Msa0178910:CDS | 40.0% | |
TCATTCTCGAGCAAGTACTT+GGG | - | chr1_4:66339245-66339264 | Msa0178910:CDS | 40.0% | |
GACTGCAATGTTACAGTTTG+AGG | - | chr1_4:66339280-66339299 | Msa0178910:CDS | 40.0% | |
!! | TGTTTTTGTGCTTGCCAACA+AGG | - | chr1_4:66339415-66339434 | Msa0178910:intron | 40.0% |
AAGCACAACATCTTCCTTGT+TGG | + | chr1_4:66339432-66339451 | None:intergenic | 40.0% | |
! | TATTTTCAGAGGACGCAGTT+AGG | - | chr1_4:66339460-66339479 | Msa0178910:intron | 40.0% |
CGGTAATAACATCTCCCAAT+TGG | + | chr1_4:66339489-66339508 | None:intergenic | 40.0% | |
ATCTTGACAGTTGACATCTC+TGG | + | chr1_4:66339798-66339817 | None:intergenic | 40.0% | |
! | ACATAGATTAGCTGTTCCAC+CGG | - | chr1_4:66339820-66339839 | Msa0178910:intron | 40.0% |
!!! | TTTTGTTTCTAGCTTTCCGG+TGG | + | chr1_4:66339839-66339858 | None:intergenic | 40.0% |
AGGAATATGGAAGGCAAACT+TGG | + | chr1_4:66339914-66339933 | None:intergenic | 40.0% | |
! | TGGAGGTAGCTACAATTTTC+AGG | + | chr1_4:66340012-66340031 | None:intergenic | 40.0% |
GAACTGTGGAAAAAAAGTGG+AGG | + | chr1_4:66340029-66340048 | None:intergenic | 40.0% | |
GTGGAACTGTGGAAAAAAAG+TGG | + | chr1_4:66340032-66340051 | None:intergenic | 40.0% | |
! | TCACAAAAGTAGTGGAACTG+TGG | + | chr1_4:66340043-66340062 | None:intergenic | 40.0% |
ACAAAACCTTCTATGGTGCA+TGG | + | chr1_4:66340082-66340101 | None:intergenic | 40.0% | |
CTCATCATCCAAGACCTGAA+GGG | + | chr1_4:66338270-66338289 | None:intergenic | 45.0% | |
TCTCATCATCCAAGACCTGA+AGG | + | chr1_4:66338271-66338290 | None:intergenic | 45.0% | |
! | TGGATTACCTTGTGGTGGAA+GGG | + | chr1_4:66338459-66338478 | None:intergenic | 45.0% |
! | TTGGATTACCTTGTGGTGGA+AGG | + | chr1_4:66338460-66338479 | None:intergenic | 45.0% |
CATCTTGGATTACCTTGTGG+TGG | + | chr1_4:66338464-66338483 | None:intergenic | 45.0% | |
CACCACAAGGTAATCCAAGA+TGG | - | chr1_4:66338462-66338481 | Msa0178910:intron | 45.0% | |
ATCGTTGTTGTGACTCCCTT+TGG | - | chr1_4:66338648-66338667 | Msa0178910:intron | 45.0% | |
TCGTTGTTGTGACTCCCTTT+GGG | - | chr1_4:66338649-66338668 | Msa0178910:intron | 45.0% | |
! | TGCTTTTGTTGGCATACCTC+AGG | - | chr1_4:66338897-66338916 | Msa0178910:intron | 45.0% |
TTGAGTTTCCTTCGTTCCTG+AGG | + | chr1_4:66338916-66338935 | None:intergenic | 45.0% | |
GGGATATTTACAGACCGGTA+AGG | - | chr1_4:66339057-66339076 | Msa0178910:intron | 45.0% | |
!! | AACTTTGTTGCTGGTTCGGA+TGG | + | chr1_4:66339338-66339357 | None:intergenic | 45.0% |
ATCCGAACCAGCAACAAAGT+TGG | - | chr1_4:66339337-66339356 | Msa0178910:intron | 45.0% | |
TCCGAACCAGCAACAAAGTT+GGG | - | chr1_4:66339338-66339357 | Msa0178910:intron | 45.0% | |
! | ACCCAACTTTGTTGCTGGTT+CGG | + | chr1_4:66339342-66339361 | None:intergenic | 45.0% |
CAACAAAGTTGGGTGAAGGT+TGG | - | chr1_4:66339348-66339367 | Msa0178910:intron | 45.0% | |
ACGCAGTTAGGCAACCAATT+GGG | - | chr1_4:66339472-66339491 | Msa0178910:intron | 45.0% | |
!! | GGTAGCTACAATTTTCAGGC+TGG | + | chr1_4:66340008-66340027 | None:intergenic | 45.0% |
CATGAACCATGCACCATAGA+AGG | - | chr1_4:66340073-66340092 | Msa0178910:intron | 45.0% | |
CTGGGGTACAAAACCTTCTA+TGG | + | chr1_4:66340089-66340108 | None:intergenic | 45.0% | |
CAACATTCCCTTCCACCACA+AGG | - | chr1_4:66338449-66338468 | Msa0178910:intron | 50.0% | |
TTGGCATACCTCAGGAACGA+AGG | - | chr1_4:66338905-66338924 | Msa0178910:intron | 50.0% | |
CCTTCACCCAACTTTGTTGC+TGG | + | chr1_4:66339347-66339366 | None:intergenic | 50.0% | |
CCAGCAACAAAGTTGGGTGA+AGG | - | chr1_4:66339344-66339363 | Msa0178910:intron | 50.0% | |
GACGCAGTTAGGCAACCAAT+TGG | - | chr1_4:66339471-66339490 | Msa0178910:intron | 50.0% | |
GCAAAGCGAAATCGCCCTTC+AGG | - | chr1_4:66338253-66338272 | Msa0178910:intron | 55.0% | |
CGAAATCGCCCTTCAGGTCT+TGG | - | chr1_4:66338259-66338278 | Msa0178910:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 66337966 | 66340618 | 66337966 | ID=Msa0178910;Name=Msa0178910 |
chr1_4 | mRNA | 66337966 | 66340618 | 66337966 | ID=Msa0178910-mRNA-1;Parent=Msa0178910;Name=Msa0178910-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|0.83|0.6|0.66|6|0|277 |
chr1_4 | exon | 66340493 | 66340618 | 66340493 | ID=Msa0178910-mRNA-1:exon:21689;Parent=Msa0178910-mRNA-1 |
chr1_4 | exon | 66340114 | 66340336 | 66340114 | ID=Msa0178910-mRNA-1:exon:21688;Parent=Msa0178910-mRNA-1 |
chr1_4 | exon | 66339973 | 66340026 | 66339973 | ID=Msa0178910-mRNA-1:exon:21687;Parent=Msa0178910-mRNA-1 |
chr1_4 | exon | 66339511 | 66339665 | 66339511 | ID=Msa0178910-mRNA-1:exon:21686;Parent=Msa0178910-mRNA-1 |
chr1_4 | exon | 66339108 | 66339351 | 66339108 | ID=Msa0178910-mRNA-1:exon:21685;Parent=Msa0178910-mRNA-1 |
chr1_4 | exon | 66337966 | 66337997 | 66337966 | ID=Msa0178910-mRNA-1:exon:21684;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66340493 | 66340618 | 66340493 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66340114 | 66340336 | 66340114 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66339973 | 66340026 | 66339973 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66339511 | 66339665 | 66339511 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66339108 | 66339351 | 66339108 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
chr1_4 | CDS | 66337966 | 66337997 | 66337966 | ID=Msa0178910-mRNA-1:cds;Parent=Msa0178910-mRNA-1 |
Gene Sequence |
Protein sequence |