Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179880 | sp|Q9SRH9|SNL1_ARATH | 41.748 | 103 | 53 | 1 | 52 | 154 | 46 | 141 | 3.79e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179880 | A0A072W0U6 | 96.429 | 112 | 4 | 0 | 59 | 170 | 1 | 112 | 1.27e-71 | 221 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0179880 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179880 | MtrunA17_Chr1g0205801 | 96.429 | 112 | 4 | 0 | 59 | 170 | 1 | 112 | 2.45e-75 | 221 |
| Msa0179880 | MtrunA17_Chr1g0205811 | 63.000 | 100 | 35 | 1 | 59 | 156 | 1 | 100 | 3.16e-39 | 129 |
| Msa0179880 | MtrunA17_Chr1g0205821 | 56.604 | 106 | 43 | 1 | 68 | 170 | 11 | 116 | 4.92e-33 | 115 |
| Msa0179880 | MtrunA17_Chr1g0205821 | 59.459 | 74 | 30 | 0 | 71 | 144 | 100 | 173 | 2.97e-23 | 90.5 |
| Msa0179880 | MtrunA17_Chr1g0205831 | 61.765 | 68 | 26 | 0 | 72 | 139 | 4 | 71 | 5.50e-24 | 92.4 |
| Msa0179880 | MtrunA17_Chr1g0205831 | 56.410 | 78 | 34 | 0 | 72 | 149 | 75 | 152 | 7.05e-22 | 87.0 |
| Msa0179880 | MtrunA17_Chr8g0364231 | 50.000 | 78 | 39 | 0 | 68 | 145 | 40 | 117 | 5.44e-19 | 83.2 |
| Msa0179880 | MtrunA17_Chr3g0077881 | 51.807 | 83 | 39 | 1 | 68 | 149 | 6 | 88 | 3.82e-18 | 77.4 |
| Msa0179880 | MtrunA17_Chr1g0206781 | 47.436 | 78 | 41 | 0 | 71 | 148 | 12 | 89 | 3.85e-18 | 75.9 |
| Msa0179880 | MtrunA17_Chr3g0077891 | 54.667 | 75 | 33 | 1 | 68 | 141 | 6 | 80 | 3.83e-17 | 74.7 |
| Msa0179880 | MtrunA17_Chr3g0077891 | 43.421 | 76 | 42 | 1 | 70 | 144 | 99 | 174 | 7.86e-11 | 57.8 |
| Msa0179880 | MtrunA17_Chr5g0415031 | 36.697 | 109 | 52 | 1 | 56 | 147 | 12 | 120 | 4.69e-17 | 77.8 |
| Msa0179880 | MtrunA17_Chr6g0452001 | 47.436 | 78 | 41 | 0 | 68 | 145 | 61 | 138 | 6.31e-17 | 77.4 |
| Msa0179880 | MtrunA17_Chr3g0077941 | 52.688 | 93 | 39 | 2 | 68 | 155 | 6 | 98 | 1.40e-16 | 73.2 |
| Msa0179880 | MtrunA17_Chr3g0077941 | 40.909 | 88 | 49 | 2 | 58 | 144 | 88 | 173 | 6.63e-11 | 58.2 |
| Msa0179880 | MtrunA17_Chr1g0206771 | 50.000 | 72 | 36 | 0 | 71 | 142 | 17 | 88 | 9.33e-16 | 71.2 |
| Msa0179880 | MtrunA17_Chr1g0206771 | 47.826 | 69 | 36 | 0 | 70 | 138 | 95 | 163 | 2.87e-11 | 59.3 |
| Msa0179880 | MtrunA17_Chr6g0452021 | 43.023 | 86 | 48 | 1 | 70 | 155 | 43 | 127 | 1.65e-15 | 73.2 |
| Msa0179880 | MtrunA17_Chr7g0218891 | 40.909 | 88 | 47 | 2 | 55 | 140 | 1 | 85 | 1.92e-15 | 71.6 |
| Msa0179880 | MtrunA17_Chr7g0218891 | 44.156 | 77 | 41 | 1 | 71 | 145 | 186 | 262 | 4.69e-12 | 62.4 |
| Msa0179880 | MtrunA17_Chr4g0075861 | 40.404 | 99 | 59 | 0 | 70 | 168 | 89 | 187 | 5.54e-15 | 71.2 |
| Msa0179880 | MtrunA17_Chr4g0075861 | 45.714 | 70 | 38 | 0 | 73 | 142 | 175 | 244 | 1.94e-12 | 63.9 |
| Msa0179880 | MtrunA17_Chr1g0205861 | 48.718 | 78 | 37 | 1 | 70 | 147 | 16 | 90 | 8.34e-15 | 67.0 |
| Msa0179880 | MtrunA17_Chr4g0075971 | 41.000 | 100 | 57 | 2 | 70 | 168 | 89 | 187 | 2.22e-14 | 70.1 |
| Msa0179880 | MtrunA17_Chr4g0075971 | 45.714 | 70 | 38 | 0 | 73 | 142 | 175 | 244 | 8.74e-13 | 65.5 |
| Msa0179880 | MtrunA17_Chr3g0077911 | 42.529 | 87 | 47 | 1 | 69 | 155 | 7 | 90 | 1.45e-13 | 64.7 |
| Msa0179880 | MtrunA17_Chr3g0077911 | 50.000 | 66 | 32 | 1 | 68 | 132 | 88 | 153 | 7.21e-12 | 60.5 |
| Msa0179880 | MtrunA17_Chr8g0364021 | 33.333 | 123 | 75 | 3 | 44 | 164 | 16 | 133 | 2.54e-13 | 65.5 |
| Msa0179880 | MtrunA17_Chr6g0486601 | 41.860 | 86 | 41 | 3 | 72 | 148 | 16 | 101 | 1.98e-12 | 60.5 |
| Msa0179880 | MtrunA17_Chr3g0077811 | 45.333 | 75 | 40 | 1 | 68 | 141 | 11 | 85 | 3.37e-12 | 60.1 |
| Msa0179880 | MtrunA17_Chr7g0256011 | 37.662 | 77 | 48 | 0 | 62 | 138 | 8 | 84 | 1.72e-11 | 58.5 |
| Msa0179880 | MtrunA17_Chr3g0077861 | 48.485 | 66 | 33 | 1 | 68 | 132 | 88 | 153 | 4.74e-11 | 58.2 |
| Msa0179880 | MtrunA17_Chr7g0218911 | 41.791 | 67 | 39 | 0 | 74 | 140 | 2 | 68 | 9.61e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179880 | AT3G01320.2 | 41.748 | 103 | 53 | 1 | 52 | 154 | 46 | 141 | 3.60e-18 | 81.3 |
| Msa0179880 | AT3G01320.1 | 41.748 | 103 | 53 | 1 | 52 | 154 | 46 | 141 | 3.85e-18 | 81.3 |
| Msa0179880 | AT1G70060.2 | 44.872 | 78 | 43 | 0 | 68 | 145 | 12 | 89 | 5.11e-15 | 72.4 |
| Msa0179880 | AT1G70060.1 | 44.872 | 78 | 43 | 0 | 68 | 145 | 12 | 89 | 5.11e-15 | 72.4 |
| Msa0179880 | AT5G15020.1 | 47.143 | 70 | 37 | 0 | 70 | 139 | 52 | 121 | 7.52e-15 | 72.0 |
| Msa0179880 | AT5G15020.2 | 47.143 | 70 | 37 | 0 | 70 | 139 | 52 | 121 | 7.89e-15 | 71.6 |
| Msa0179880 | AT1G24190.2 | 44.737 | 76 | 42 | 0 | 68 | 143 | 12 | 87 | 1.94e-14 | 70.5 |
| Msa0179880 | AT1G24190.1 | 44.737 | 76 | 42 | 0 | 68 | 143 | 12 | 87 | 1.98e-14 | 70.5 |
| Msa0179880 | AT1G24190.3 | 44.737 | 76 | 42 | 0 | 68 | 143 | 12 | 87 | 2.06e-14 | 70.5 |
| Msa0179880 | AT5G15040.1 | 46.753 | 77 | 39 | 1 | 68 | 144 | 1 | 75 | 4.64e-14 | 64.7 |
| Msa0179880 | AT5G15040.3 | 46.753 | 77 | 39 | 1 | 68 | 144 | 1 | 75 | 4.64e-14 | 64.7 |
| Msa0179880 | AT5G15040.2 | 46.753 | 77 | 39 | 1 | 68 | 144 | 1 | 75 | 4.64e-14 | 64.7 |
| Msa0179880 | AT1G24200.1 | 47.143 | 70 | 37 | 0 | 69 | 138 | 13 | 82 | 1.04e-13 | 66.2 |
| Msa0179880 | AT5G15025.1 | 44.872 | 78 | 40 | 1 | 70 | 147 | 47 | 121 | 1.17e-13 | 64.3 |
| Msa0179880 | AT1G27220.1 | 42.466 | 73 | 42 | 0 | 66 | 138 | 10 | 82 | 1.22e-13 | 65.9 |
| Msa0179880 | AT1G23810.1 | 39.759 | 83 | 49 | 1 | 68 | 150 | 107 | 188 | 4.16e-12 | 62.8 |
| Msa0179880 | AT1G59890.2 | 38.158 | 76 | 47 | 0 | 70 | 145 | 45 | 120 | 8.77e-12 | 62.8 |
| Msa0179880 | AT1G59890.4 | 38.158 | 76 | 47 | 0 | 70 | 145 | 45 | 120 | 9.10e-12 | 62.8 |
| Msa0179880 | AT1G59890.1 | 38.158 | 76 | 47 | 0 | 70 | 145 | 45 | 120 | 9.55e-12 | 62.8 |
| Msa0179880 | AT1G59890.3 | 38.158 | 76 | 47 | 0 | 70 | 145 | 45 | 120 | 9.73e-12 | 62.8 |
| Msa0179880 | AT1G24230.1 | 51.515 | 66 | 31 | 1 | 68 | 132 | 12 | 77 | 1.03e-11 | 61.6 |
| Msa0179880 | AT1G24230.1 | 38.571 | 70 | 43 | 0 | 73 | 142 | 89 | 158 | 1.08e-11 | 61.6 |
| Msa0179880 | AT1G24250.1 | 39.535 | 86 | 51 | 1 | 65 | 150 | 115 | 199 | 2.73e-11 | 60.5 |
| Msa0179880 | AT1G24210.1 | 34.940 | 83 | 47 | 1 | 51 | 133 | 2 | 77 | 2.94e-11 | 58.9 |
| Msa0179880 | AT1G70030.3 | 40.230 | 87 | 51 | 1 | 70 | 156 | 22 | 107 | 3.07e-11 | 58.2 |
| Msa0179880 | AT5G35610.1 | 42.500 | 80 | 43 | 1 | 78 | 157 | 18 | 94 | 3.47e-11 | 58.9 |
| Msa0179880 | AT1G70030.2 | 40.230 | 87 | 51 | 1 | 70 | 156 | 22 | 107 | 6.08e-11 | 57.8 |
| Msa0179880 | AT1G27250.1 | 39.706 | 68 | 41 | 0 | 70 | 137 | 21 | 88 | 6.76e-11 | 57.8 |
| Msa0179880 | AT1G27260.1 | 37.209 | 86 | 53 | 1 | 65 | 150 | 88 | 172 | 8.85e-11 | 58.9 |
| Msa0179880 | AT1G10450.3 | 36.047 | 86 | 54 | 1 | 70 | 155 | 84 | 168 | 9.13e-11 | 60.1 |
| Msa0179880 | AT1G10450.2 | 38.571 | 70 | 43 | 0 | 70 | 139 | 33 | 102 | 9.91e-11 | 60.1 |
| Msa0179880 | AT1G10450.1 | 38.571 | 70 | 43 | 0 | 70 | 139 | 33 | 102 | 9.91e-11 | 60.1 |
Find 40 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGAATTGGAGTTTAA+AGG | 0.213179 | 1_4:+67593048 | Msa0179880:three_prime_UTR |
| ACTCAGCATTAAGGCGTATC+AGG | 0.355136 | 1_4:+67591743 | Msa0179880:CDS |
| CAGCAGAAAAGGACGAAAAT+TGG | 0.355383 | 1_4:-67591682 | None:intergenic |
| CGACACTGCTTCACCAATCT+TGG | 0.362408 | 1_4:-67592731 | None:intergenic |
| GCAACAATAAGCTGATGAAT+TGG | 0.369113 | 1_4:+67593038 | Msa0179880:exon |
| GAAAATTCTAGATGATTTCT+CGG | 0.377556 | 1_4:+67592813 | Msa0179880:CDS |
| TGAAGCAGTGTCGTTTGTTA+TGG | 0.413384 | 1_4:+67592741 | Msa0179880:CDS |
| CACAATGGAGGCAGCAGAAA+AGG | 0.425133 | 1_4:-67591693 | None:intergenic |
| TAAAACATGTGTTTCAAGAT+AGG | 0.427626 | 1_4:+67592767 | Msa0179880:CDS |
| TCATCTTCTCAAGATGTAGA+AGG | 0.432636 | 1_4:+67591717 | Msa0179880:CDS |
| TAAGTTTGTTAATAGGTAGT+TGG | 0.438766 | 1_4:+67592398 | Msa0179880:intron |
| AGCTGCTCGATCAATTCTTT+CGG | 0.448838 | 1_4:-67592836 | None:intergenic |
| GGCGCGGCGCATCTCATCTC+AGG | 0.459739 | 1_4:+67592457 | Msa0179880:CDS |
| CTACAAACTCTATACATTTG+AGG | 0.471166 | 1_4:+67592433 | Msa0179880:CDS |
| TATTGTTGCTGATCATCAAA+TGG | 0.491825 | 1_4:-67593024 | None:intergenic |
| ACAAGAAATCTCACTTCCAT+TGG | 0.504181 | 1_4:+67592936 | Msa0179880:CDS |
| CACACAGTAGATGCCAAGAT+TGG | 0.507567 | 1_4:+67592718 | Msa0179880:CDS |
| AAAATTGGAGGAATTTGAAA+GGG | 0.508958 | 1_4:-67591667 | None:intergenic |
| TTCAACATCTTCTTGCCACC+AGG | 0.516818 | 1_4:+67592913 | Msa0179880:CDS |
| AACATGTGTTTCAAGATAGG+AGG | 0.520327 | 1_4:+67592770 | Msa0179880:CDS |
| GATCGAGCAGCTGTGAAAGA+AGG | 0.542586 | 1_4:+67592847 | Msa0179880:CDS |
| CATCTTCTCAAGATGTAGAA+GGG | 0.544607 | 1_4:+67591718 | Msa0179880:CDS |
| GAAAATTGGAGGAATTTGAA+AGG | 0.550504 | 1_4:-67591668 | None:intergenic |
| GAGTTGTTAAAAGATCATAA+AGG | 0.560105 | 1_4:+67592877 | Msa0179880:CDS |
| AGGTCGATCTATAAAATGAC+AGG | 0.562393 | 1_4:+67593108 | Msa0179880:three_prime_UTR |
| GGAAGTGAGATTTCTTGTCC+TGG | 0.563657 | 1_4:-67592931 | None:intergenic |
| ACATGTGTTTCAAGATAGGA+GGG | 0.571664 | 1_4:+67592771 | Msa0179880:CDS |
| TGTTGTTCATCATCATCCAA+TGG | 0.574340 | 1_4:-67592952 | None:intergenic |
| CAGAAAAGGACGAAAATTGG+AGG | 0.577687 | 1_4:-67591679 | None:intergenic |
| GATGATGAACAACAAGGTGA+TGG | 0.587348 | 1_4:+67592961 | Msa0179880:CDS |
| ATCTTCTCAAGATGTAGAAG+GGG | 0.592094 | 1_4:+67591719 | Msa0179880:CDS |
| AGCTGTGAAAGAAGGAATGT+CGG | 0.605622 | 1_4:+67592855 | Msa0179880:CDS |
| GATTACAATATCATGTCACT+AGG | 0.613330 | 1_4:+67593088 | Msa0179880:three_prime_UTR |
| TGAGAAGATGAGCACAATGG+AGG | 0.639971 | 1_4:-67591705 | None:intergenic |
| TCTATACATTTGAGGCGGCG+CGG | 0.667131 | 1_4:+67592441 | Msa0179880:CDS |
| TCTTGAGAAGATGAGCACAA+TGG | 0.669986 | 1_4:-67591708 | None:intergenic |
| AGTGAGATTTCTTGTCCTGG+TGG | 0.701056 | 1_4:-67592928 | None:intergenic |
| TCTTCTCAAGATGTAGAAGG+GGG | 0.705047 | 1_4:+67591720 | Msa0179880:CDS |
| CAAACTCTATACATTTGAGG+CGG | 0.712900 | 1_4:+67592436 | Msa0179880:CDS |
| TTGGATGATGATGAACAACA+AGG | 0.775028 | 1_4:+67592955 | Msa0179880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATACTAAAACTATTT+CGG | - | chr1_4:67590847-67590866 | None:intergenic | 15.0% |
| !! | AAAGAAAAGATTAAAAAACA+GGG | - | chr1_4:67591894-67591913 | None:intergenic | 15.0% |
| !! | AAAAGAAAAGATTAAAAAAC+AGG | - | chr1_4:67591895-67591914 | None:intergenic | 15.0% |
| !!! | AAATGATTTTTTTTTTCACA+GGG | - | chr1_4:67591941-67591960 | None:intergenic | 15.0% |
| !!! | TAAATGATTTTTTTTTTCAC+AGG | - | chr1_4:67591942-67591961 | None:intergenic | 15.0% |
| !!! | TATAATTAAAGATGTCTTTT+TGG | - | chr1_4:67591974-67591993 | None:intergenic | 15.0% |
| !! | TTTGATAAAATAAGACTAAA+GGG | - | chr1_4:67592347-67592366 | None:intergenic | 15.0% |
| !! | ATTTGATAAAATAAGACTAA+AGG | - | chr1_4:67592348-67592367 | None:intergenic | 15.0% |
| !! | TAATCATCTATGAAAAGAAA+AGG | - | chr1_4:67590650-67590669 | None:intergenic | 20.0% |
| !!! | CTTTTCATAGATGATTATTA+CGG | + | chr1_4:67590653-67590672 | Msa0179880:intron | 20.0% |
| !!! | TTTTCATAGATGATTATTAC+GGG | + | chr1_4:67590654-67590673 | Msa0179880:intron | 20.0% |
| !! | TCTCAAACATGTATAAAATA+GGG | + | chr1_4:67590717-67590736 | Msa0179880:intron | 20.0% |
| !!! | AGCATTTTTTTACACTTTAA+TGG | + | chr1_4:67590807-67590826 | Msa0179880:intron | 20.0% |
| !!! | CGAAATAGTTTTAGTATATT+TGG | + | chr1_4:67590845-67590864 | Msa0179880:intron | 20.0% |
| !! | AGGAACCAAATATAAAAAAA+GGG | - | chr1_4:67591056-67591075 | None:intergenic | 20.0% |
| !! | AAGGAACCAAATATAAAAAA+AGG | - | chr1_4:67591057-67591076 | None:intergenic | 20.0% |
| !! | ATGAAATTATTACAAAGTAG+AGG | + | chr1_4:67591575-67591594 | Msa0179880:intron | 20.0% |
| !!! | GAAATTTTTCTTGAATGAAT+GGG | - | chr1_4:67592043-67592062 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTCTTGAATGAA+TGG | - | chr1_4:67592044-67592063 | None:intergenic | 20.0% |
| !!! | ACTATGATATCATCAAATTT+TGG | + | chr1_4:67592126-67592145 | Msa0179880:intron | 20.0% |
| !!! | CTATGATATCATCAAATTTT+GGG | + | chr1_4:67592127-67592146 | Msa0179880:intron | 20.0% |
| !! | TTAACTTTCATTTATTGTGT+TGG | + | chr1_4:67592293-67592312 | Msa0179880:intron | 20.0% |
| !! | TAACTTTCATTTATTGTGTT+GGG | + | chr1_4:67592294-67592313 | Msa0179880:intron | 20.0% |
| !! | TTGATAAAATAAGACTAAAG+GGG | - | chr1_4:67592346-67592365 | None:intergenic | 20.0% |
| ! | CTCTCAAACATGTATAAAAT+AGG | + | chr1_4:67590716-67590735 | Msa0179880:intron | 25.0% |
| ! | ACAATACTATGCCTAATTTA+TGG | - | chr1_4:67591107-67591126 | None:intergenic | 25.0% |
| ! | TATAGCTCTTGTATTATGTA+AGG | - | chr1_4:67591249-67591268 | None:intergenic | 25.0% |
| ! | TTTCAATAGTAGTTAGAAAG+TGG | + | chr1_4:67591280-67591299 | Msa0179880:intron | 25.0% |
| ! | TTATTACTGTGTTAATCTTC+AGG | + | chr1_4:67591426-67591445 | Msa0179880:intron | 25.0% |
| ! | TATTACTGTGTTAATCTTCA+GGG | + | chr1_4:67591427-67591446 | Msa0179880:intron | 25.0% |
| !!! | GTCTTTTTGAAATAAGTACA+AGG | + | chr1_4:67591603-67591622 | Msa0179880:intron | 25.0% |
| !! | TCTTTTATTCTCAATTATGC+AGG | + | chr1_4:67591640-67591659 | Msa0179880:intron | 25.0% |
| ! | AAAATTGGAGGAATTTGAAA+GGG | - | chr1_4:67591670-67591689 | None:intergenic | 25.0% |
| ! | TTATTGCTTAAAATTGAGCT+GGG | - | chr1_4:67591794-67591813 | None:intergenic | 25.0% |
| ! | TTTATTGCTTAAAATTGAGC+TGG | - | chr1_4:67591795-67591814 | None:intergenic | 25.0% |
| ! | AAATGAATCACTCATTTATC+TGG | + | chr1_4:67591812-67591831 | Msa0179880:intron | 25.0% |
| ! | TCTGGATTTATTAATCTACT+AGG | + | chr1_4:67591830-67591849 | Msa0179880:intron | 25.0% |
| ! | CTGGATTTATTAATCTACTA+GGG | + | chr1_4:67591831-67591850 | Msa0179880:intron | 25.0% |
| ! | TGATAAAATAAGACTAAAGG+GGG | - | chr1_4:67592345-67592364 | None:intergenic | 25.0% |
| ! | ACTACCTATTAACAAACTTA+GGG | - | chr1_4:67592398-67592417 | None:intergenic | 25.0% |
| ! | AACTACCTATTAACAAACTT+AGG | - | chr1_4:67592399-67592418 | None:intergenic | 25.0% |
| !!! | TAAGTTTGTTAATAGGTAGT+TGG | + | chr1_4:67592398-67592417 | Msa0179880:intron | 25.0% |
| ! | AGAACATAAGAATATGAATG+AGG | - | chr1_4:67592493-67592512 | None:intergenic | 25.0% |
| !! | CTAAATTCAAAAGGTATAGA+GGG | - | chr1_4:67592528-67592547 | None:intergenic | 25.0% |
| !!! | ATACCTTTTGAATTTAGGTT+TGG | + | chr1_4:67592531-67592550 | Msa0179880:intron | 25.0% |
| ! | AAACCAAACCTAAATTCAAA+AGG | - | chr1_4:67592537-67592556 | None:intergenic | 25.0% |
| !! | CTAAATTCAAAAGGTATAGA+GGG | - | chr1_4:67592528-67592547 | None:intergenic | 25.0% |
| !!! | ATACCTTTTGAATTTAGGTT+TGG | + | chr1_4:67592531-67592550 | Msa0179880:intron | 25.0% |
| ! | AAACCAAACCTAAATTCAAA+AGG | - | chr1_4:67592537-67592556 | None:intergenic | 25.0% |
| !!! | AGGTTTGGTTTAATTTTGAA+TGG | + | chr1_4:67592643-67592662 | Msa0179880:intron | 25.0% |
| !!! | GGTTTGGTTTAATTTTGAAT+GGG | + | chr1_4:67592644-67592663 | Msa0179880:intron | 25.0% |
| ! | TAAAACATGTGTTTCAAGAT+AGG | + | chr1_4:67592767-67592786 | Msa0179880:CDS | 25.0% |
| ! | GAAAATTCTAGATGATTTCT+CGG | + | chr1_4:67592813-67592832 | Msa0179880:CDS | 25.0% |
| ! | GAGTTGTTAAAAGATCATAA+AGG | + | chr1_4:67592877-67592896 | Msa0179880:CDS | 25.0% |
| TCTATGAAAAGAAAAGGAGT+AGG | - | chr1_4:67590644-67590663 | None:intergenic | 30.0% | |
| TACATGTTTGAGAGAATTTG+TGG | - | chr1_4:67590710-67590729 | None:intergenic | 30.0% | |
| ATAAAATAGGGTCATGCTAA+TGG | + | chr1_4:67590729-67590748 | Msa0179880:intron | 30.0% | |
| TAAAATAGGGTCATGCTAAT+GGG | + | chr1_4:67590730-67590749 | Msa0179880:intron | 30.0% | |
| ! | TATATTTGGTTCCTTAACGA+GGG | + | chr1_4:67590859-67590878 | Msa0179880:intron | 30.0% |
| AATATAAAAAAAGGGCAACC+CGG | - | chr1_4:67591048-67591067 | None:intergenic | 30.0% | |
| !!! | GGTTGCCCTTTTTTTATATT+TGG | + | chr1_4:67591048-67591067 | Msa0179880:intron | 30.0% |
| GTTCCTTAACAAGTATCATA+GGG | + | chr1_4:67591070-67591089 | Msa0179880:intron | 30.0% | |
| ! | CACTTGTTAGTCCATAAATT+AGG | + | chr1_4:67591093-67591112 | Msa0179880:intron | 30.0% |
| ! | GTTTCAATTGAACTCACTTT+TGG | + | chr1_4:67591125-67591144 | Msa0179880:intron | 30.0% |
| GAGAAAAATATTGTCCCAAA+AGG | - | chr1_4:67591179-67591198 | None:intergenic | 30.0% | |
| GATAAGAAACTTTCTTGTCT+TGG | - | chr1_4:67591205-67591224 | None:intergenic | 30.0% | |
| TAAGATCCATCATGATTGTA+GGG | - | chr1_4:67591331-67591350 | None:intergenic | 30.0% | |
| TTAAGATCCATCATGATTGT+AGG | - | chr1_4:67591332-67591351 | None:intergenic | 30.0% | |
| GAAAATTGGAGGAATTTGAA+AGG | - | chr1_4:67591671-67591690 | None:intergenic | 30.0% | |
| TATTGCTTAAAATTGAGCTG+GGG | - | chr1_4:67591793-67591812 | None:intergenic | 30.0% | |
| !! | GAATGAATGGGTTCATTTTT+GGG | - | chr1_4:67592031-67592050 | None:intergenic | 30.0% |
| !! | TGAATGAATGGGTTCATTTT+TGG | - | chr1_4:67592032-67592051 | None:intergenic | 30.0% |
| ! | ACATAGATTTTTCACTGAGT+AGG | - | chr1_4:67592085-67592104 | None:intergenic | 30.0% |
| !! | CTTACCCTAAGTTTGTTAAT+AGG | + | chr1_4:67592391-67592410 | Msa0179880:intron | 30.0% |
| CTACAAACTCTATACATTTG+AGG | + | chr1_4:67592433-67592452 | Msa0179880:CDS | 30.0% | |
| ! | CCTAAATTCAAAAGGTATAG+AGG | - | chr1_4:67592529-67592548 | None:intergenic | 30.0% |
| ! | CCTCTATACCTTTTGAATTT+AGG | + | chr1_4:67592526-67592545 | Msa0179880:intron | 30.0% |
| !!! | GGTTTGGTTTTGTTTTGAAT+TGG | + | chr1_4:67592547-67592566 | Msa0179880:intron | 30.0% |
| ! | CCTAAATTCAAAAGGTATAG+AGG | - | chr1_4:67592529-67592548 | None:intergenic | 30.0% |
| ! | CCTCTATACCTTTTGAATTT+AGG | + | chr1_4:67592526-67592545 | Msa0179880:intron | 30.0% |
| TATTGTTGCTGATCATCAAA+TGG | - | chr1_4:67593027-67593046 | None:intergenic | 30.0% | |
| GATTACAATATCATGTCACT+AGG | + | chr1_4:67593088-67593107 | Msa0179880:three_prime_UTR | 30.0% | |
| GTGGTCTGCAAAATATAACA+TGG | - | chr1_4:67590691-67590710 | None:intergenic | 35.0% | |
| ATTTCCTAAACAATTGTGCC+AGG | - | chr1_4:67590760-67590779 | None:intergenic | 35.0% | |
| ! | GTATATTTGGTTCCTTAACG+AGG | + | chr1_4:67590858-67590877 | Msa0179880:intron | 35.0% |
| ! | ATATTTGGTTCCTTAACGAG+GGG | + | chr1_4:67590860-67590879 | Msa0179880:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr1_4:67590901-67590920 | Msa0179880:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr1_4:67590951-67590970 | Msa0179880:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr1_4:67590956-67590975 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr1_4:67590956-67590975 | Msa0179880:intron | 35.0% | |
| GGTTCCTTAACAAGTATCAT+AGG | + | chr1_4:67591069-67591088 | Msa0179880:intron | 35.0% | |
| ! | TGTTAAGCATAAGGCCTTTT+GGG | + | chr1_4:67591162-67591181 | Msa0179880:intron | 35.0% |
| CAGTAGACCTACAAGAAAAT+GGG | + | chr1_4:67591358-67591377 | Msa0179880:intron | 35.0% | |
| ! | AACATTGCCCATTTTCTTGT+AGG | - | chr1_4:67591368-67591387 | None:intergenic | 35.0% |
| TAAGAGTGATCTGTCATGAT+TGG | + | chr1_4:67591486-67591505 | Msa0179880:intron | 35.0% | |
| AAGAGTGATCTGTCATGATT+GGG | + | chr1_4:67591487-67591506 | Msa0179880:intron | 35.0% | |
| !! | GAGCTTTGGTCATTTTGTTT+TGG | + | chr1_4:67591538-67591557 | Msa0179880:intron | 35.0% |
| TGAAATAAGTACAAGGCATG+TGG | + | chr1_4:67591610-67591629 | Msa0179880:intron | 35.0% | |
| GAAATAAGTACAAGGCATGT+GGG | + | chr1_4:67591611-67591630 | Msa0179880:intron | 35.0% | |
| TCATCTTCTCAAGATGTAGA+AGG | + | chr1_4:67591717-67591736 | Msa0179880:CDS | 35.0% | |
| CATCTTCTCAAGATGTAGAA+GGG | + | chr1_4:67591718-67591737 | Msa0179880:CDS | 35.0% | |
| ATCTTCTCAAGATGTAGAAG+GGG | + | chr1_4:67591719-67591738 | Msa0179880:CDS | 35.0% | |
| TATTAATCTACTAGGGACTG+AGG | + | chr1_4:67591838-67591857 | Msa0179880:intron | 35.0% | |
| AACAAGAAACCGAATGAACT+GGG | - | chr1_4:67592320-67592339 | None:intergenic | 35.0% | |
| CAAACTCTATACATTTGAGG+CGG | + | chr1_4:67592436-67592455 | Msa0179880:CDS | 35.0% | |
| TAACATTTCCCTTGAAGATG+AGG | + | chr1_4:67592692-67592711 | Msa0179880:intron | 35.0% | |
| AACATGTGTTTCAAGATAGG+AGG | + | chr1_4:67592770-67592789 | Msa0179880:CDS | 35.0% | |
| ACATGTGTTTCAAGATAGGA+GGG | + | chr1_4:67592771-67592790 | Msa0179880:CDS | 35.0% | |
| ACAAGAAATCTCACTTCCAT+TGG | + | chr1_4:67592936-67592955 | Msa0179880:CDS | 35.0% | |
| TGTTGTTCATCATCATCCAA+TGG | - | chr1_4:67592955-67592974 | None:intergenic | 35.0% | |
| ! | TTGGATGATGATGAACAACA+AGG | + | chr1_4:67592955-67592974 | Msa0179880:CDS | 35.0% |
| GCAACAATAAGCTGATGAAT+TGG | + | chr1_4:67593038-67593057 | Msa0179880:exon | 35.0% | |
| GCTGATGAATTGGAGTTTAA+AGG | + | chr1_4:67593048-67593067 | Msa0179880:three_prime_UTR | 35.0% | |
| !! | TTACACAAGAGGCTGTTTCT+AGG | - | chr1_4:67590945-67590964 | None:intergenic | 40.0% |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr1_4:67590950-67590969 | Msa0179880:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_4:67590982-67591001 | Msa0179880:intron | 40.0% | |
| ! | GTGCCCTATGATACTTGTTA+AGG | - | chr1_4:67591076-67591095 | None:intergenic | 40.0% |
| CAACCTCTGTGTTAAGCATA+AGG | + | chr1_4:67591153-67591172 | Msa0179880:intron | 40.0% | |
| ! | GTGTTAAGCATAAGGCCTTT+TGG | + | chr1_4:67591161-67591180 | Msa0179880:intron | 40.0% |
| ACTGATCCCTACAATCATGA+TGG | + | chr1_4:67591322-67591341 | Msa0179880:intron | 40.0% | |
| GCAGTAGACCTACAAGAAAA+TGG | + | chr1_4:67591357-67591376 | Msa0179880:intron | 40.0% | |
| ACTCTTACATGGTTGTGTTC+TGG | - | chr1_4:67591473-67591492 | None:intergenic | 40.0% | |
| CATGACAGATCACTCTTACA+TGG | - | chr1_4:67591484-67591503 | None:intergenic | 40.0% | |
| !!! | CCTGCACATTTTTTGAACTG+AGG | - | chr1_4:67591519-67591538 | None:intergenic | 40.0% |
| CCTCAGTTCAAAAAATGTGC+AGG | + | chr1_4:67591516-67591535 | Msa0179880:intron | 40.0% | |
| CAAAAAATGTGCAGGAGCTT+TGG | + | chr1_4:67591524-67591543 | Msa0179880:intron | 40.0% | |
| CAGAAAAGGACGAAAATTGG+AGG | - | chr1_4:67591682-67591701 | None:intergenic | 40.0% | |
| CAGCAGAAAAGGACGAAAAT+TGG | - | chr1_4:67591685-67591704 | None:intergenic | 40.0% | |
| TCTTGAGAAGATGAGCACAA+TGG | - | chr1_4:67591711-67591730 | None:intergenic | 40.0% | |
| TCTTCTCAAGATGTAGAAGG+GGG | + | chr1_4:67591720-67591739 | Msa0179880:CDS | 40.0% | |
| ! | CGTATCAGGTTGCTTCTTAA+AGG | + | chr1_4:67591757-67591776 | Msa0179880:intron | 40.0% |
| !!! | AGGCAGACGATTTGTTTTGA+CGG | + | chr1_4:67591858-67591877 | Msa0179880:intron | 40.0% |
| ACTGAGTAGGATCTCAATTG+TGG | - | chr1_4:67592072-67592091 | None:intergenic | 40.0% | |
| ATCCTCCCATTCAATTGCAA+TGG | + | chr1_4:67592222-67592241 | Msa0179880:intron | 40.0% | |
| CGACTCCATTGCAATTGAAT+GGG | - | chr1_4:67592230-67592249 | None:intergenic | 40.0% | |
| TCGACTCCATTGCAATTGAA+TGG | - | chr1_4:67592231-67592250 | None:intergenic | 40.0% | |
| CAACAAGAAACCGAATGAAC+TGG | - | chr1_4:67592321-67592340 | None:intergenic | 40.0% | |
| CAGTTCATTCGGTTTCTTGT+TGG | + | chr1_4:67592319-67592338 | Msa0179880:intron | 40.0% | |
| !! | TGAAGCAGTGTCGTTTGTTA+TGG | + | chr1_4:67592741-67592760 | Msa0179880:CDS | 40.0% |
| AGCTGCTCGATCAATTCTTT+CGG | - | chr1_4:67592839-67592858 | None:intergenic | 40.0% | |
| AGCTGTGAAAGAAGGAATGT+CGG | + | chr1_4:67592855-67592874 | Msa0179880:CDS | 40.0% | |
| GATGATGAACAACAAGGTGA+TGG | + | chr1_4:67592961-67592980 | Msa0179880:CDS | 40.0% | |
| TGCTCCTGGCACAATTGTTT+AGG | + | chr1_4:67590753-67590772 | Msa0179880:intron | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr1_4:67590905-67590924 | Msa0179880:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_4:67590978-67590997 | Msa0179880:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_4:67590981-67591000 | Msa0179880:intron | 45.0% | |
| ! | AGGCCTTATGCTTAACACAG+AGG | - | chr1_4:67591159-67591178 | None:intergenic | 45.0% |
| TGAGAAGATGAGCACAATGG+AGG | - | chr1_4:67591708-67591727 | None:intergenic | 45.0% | |
| ACTCAGCATTAAGGCGTATC+AGG | + | chr1_4:67591743-67591762 | Msa0179880:CDS | 45.0% | |
| !!! | GGCAGACGATTTGTTTTGAC+GGG | + | chr1_4:67591859-67591878 | Msa0179880:intron | 45.0% |
| !! | TTTGGGTTGCGTCTAACTCA+AGG | + | chr1_4:67592144-67592163 | Msa0179880:intron | 45.0% |
| AATGGTCGATCAAGGTGGAA+TGG | + | chr1_4:67592170-67592189 | Msa0179880:intron | 45.0% | |
| AATTGAATGGGAGGATGAGG+GGG | - | chr1_4:67592218-67592237 | None:intergenic | 45.0% | |
| CAATTGAATGGGAGGATGAG+GGG | - | chr1_4:67592219-67592238 | None:intergenic | 45.0% | |
| GCAATTGAATGGGAGGATGA+GGG | - | chr1_4:67592220-67592239 | None:intergenic | 45.0% | |
| TGCAATTGAATGGGAGGATG+AGG | - | chr1_4:67592221-67592240 | None:intergenic | 45.0% | |
| CTCCATTGCAATTGAATGGG+AGG | - | chr1_4:67592227-67592246 | None:intergenic | 45.0% | |
| ACAAACCCAAGCCCAACAAA+GGG | - | chr1_4:67592267-67592286 | None:intergenic | 45.0% | |
| AACAAACCCAAGCCCAACAA+AGG | - | chr1_4:67592268-67592287 | None:intergenic | 45.0% | |
| GTGTGTCTCCTCATCTTCAA+GGG | - | chr1_4:67592703-67592722 | None:intergenic | 45.0% | |
| TGTGTGTCTCCTCATCTTCA+AGG | - | chr1_4:67592704-67592723 | None:intergenic | 45.0% | |
| CACACAGTAGATGCCAAGAT+TGG | + | chr1_4:67592718-67592737 | Msa0179880:CDS | 45.0% | |
| TTCAACATCTTCTTGCCACC+AGG | + | chr1_4:67592913-67592932 | Msa0179880:CDS | 45.0% | |
| AGTGAGATTTCTTGTCCTGG+TGG | - | chr1_4:67592931-67592950 | None:intergenic | 45.0% | |
| GGAAGTGAGATTTCTTGTCC+TGG | - | chr1_4:67592934-67592953 | None:intergenic | 45.0% | |
| TCCTTAACGAGGGGTAACCT+TGG | + | chr1_4:67590869-67590888 | Msa0179880:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1_4:67590889-67590908 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+AGG | + | chr1_4:67590912-67590931 | Msa0179880:intron | 50.0% | |
| CACAATGGAGGCAGCAGAAA+AGG | - | chr1_4:67591696-67591715 | None:intergenic | 50.0% | |
| AGAAGGGGGACTCAGCATTA+AGG | + | chr1_4:67591734-67591753 | Msa0179880:CDS | 50.0% | |
| GCGTCTAACTCAAGGTGGAA+TGG | + | chr1_4:67592152-67592171 | Msa0179880:intron | 50.0% | |
| CAAGGTGGAATGGTCGATCA+AGG | + | chr1_4:67592162-67592181 | Msa0179880:intron | 50.0% | |
| ATTGCAATGGAGTCGACGAC+AGG | + | chr1_4:67592235-67592254 | Msa0179880:intron | 50.0% | |
| TTGCAATGGAGTCGACGACA+GGG | + | chr1_4:67592236-67592255 | Msa0179880:intron | 50.0% | |
| CAAACCCAAGCCCAACAAAG+GGG | - | chr1_4:67592266-67592285 | None:intergenic | 50.0% | |
| TGTGTTGGGCCCAGTTCATT+CGG | + | chr1_4:67592308-67592327 | Msa0179880:intron | 50.0% | |
| ! | TCTATACATTTGAGGCGGCG+CGG | + | chr1_4:67592441-67592460 | Msa0179880:CDS | 50.0% |
| CGACACTGCTTCACCAATCT+TGG | - | chr1_4:67592734-67592753 | None:intergenic | 50.0% | |
| GATCGAGCAGCTGTGAAAGA+AGG | + | chr1_4:67592847-67592866 | Msa0179880:CDS | 50.0% | |
| ! | GTCATGCTAATGGGTGCTCC+TGG | + | chr1_4:67590739-67590758 | Msa0179880:intron | 55.0% |
| GCCAAGGTTACCCCTCGTTA+AGG | - | chr1_4:67590873-67590892 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr1_4:67591021-67591040 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr1_4:67591022-67591041 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1_4:67591026-67591045 | Msa0179880:intron | 55.0% |
| GGGTTGCGTCTAACTCAAGG+TGG | + | chr1_4:67592147-67592166 | Msa0179880:intron | 55.0% | |
| GGTGGAATGGTCGATCAAGG+TGG | + | chr1_4:67592165-67592184 | Msa0179880:intron | 55.0% | |
| ATGGGAGGATGAGGGGGAAT+AGG | - | chr1_4:67592212-67592231 | None:intergenic | 55.0% | |
| ACAGGGTCTGCCCCTTTGTT+GGG | + | chr1_4:67592253-67592272 | Msa0179880:intron | 55.0% | |
| TCTGCCCCTTTGTTGGGCTT+GGG | + | chr1_4:67592259-67592278 | Msa0179880:intron | 55.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_4:67590878-67590897 | Msa0179880:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1_4:67591027-67591046 | Msa0179880:intron | 60.0% |
| GACAGGGTCTGCCCCTTTGT+TGG | + | chr1_4:67592252-67592271 | Msa0179880:intron | 60.0% | |
| GTCTGCCCCTTTGTTGGGCT+TGG | + | chr1_4:67592258-67592277 | Msa0179880:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTCCC+CGG | + | chr1_4:67590994-67591013 | Msa0179880:intron | 65.0% |
| CGGGGAGGGGTCCCACCATT+TGG | - | chr1_4:67590996-67591015 | None:intergenic | 70.0% | |
| CATACGCAGGGTCCGGGGAG+GGG | - | chr1_4:67591009-67591028 | None:intergenic | 70.0% | |
| GCATACGCAGGGTCCGGGGA+GGG | - | chr1_4:67591010-67591029 | None:intergenic | 70.0% | |
| CTCCCCGGACCCTGCGTATG+CGG | + | chr1_4:67591009-67591028 | Msa0179880:intron | 70.0% | |
| TCCCCGGACCCTGCGTATGC+GGG | + | chr1_4:67591010-67591029 | Msa0179880:intron | 70.0% | |
| TCCCGCATACGCAGGGTCCG+GGG | - | chr1_4:67591014-67591033 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1_4:67591015-67591034 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1_4:67591016-67591035 | None:intergenic | 70.0% | |
| GGCGCGGCGCATCTCATCTC+AGG | + | chr1_4:67592457-67592476 | Msa0179880:CDS | 70.0% | |
| CGCATACGCAGGGTCCGGGG+AGG | - | chr1_4:67591011-67591030 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67590628 | 67593129 | 67590628 | ID=Msa0179880;Name=Msa0179880 |
| chr1_4 | mRNA | 67590628 | 67593129 | 67590628 | ID=Msa0179880-mRNA-1;Parent=Msa0179880;Name=Msa0179880-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.66|0.75|0.75|0.66|0.75|4|82|170 |
| chr1_4 | exon | 67590628 | 67590632 | 67590628 | ID=Msa0179880-mRNA-1:exon:22277;Parent=Msa0179880-mRNA-1 |
| chr1_4 | exon | 67591662 | 67591764 | 67591662 | ID=Msa0179880-mRNA-1:exon:22278;Parent=Msa0179880-mRNA-1 |
| chr1_4 | exon | 67592413 | 67592478 | 67592413 | ID=Msa0179880-mRNA-1:exon:22279;Parent=Msa0179880-mRNA-1 |
| chr1_4 | exon | 67592709 | 67593129 | 67592709 | ID=Msa0179880-mRNA-1:exon:22280;Parent=Msa0179880-mRNA-1 |
| chr1_4 | CDS | 67590628 | 67590632 | 67590628 | ID=Msa0179880-mRNA-1:cds;Parent=Msa0179880-mRNA-1 |
| chr1_4 | CDS | 67591662 | 67591764 | 67591662 | ID=Msa0179880-mRNA-1:cds;Parent=Msa0179880-mRNA-1 |
| chr1_4 | CDS | 67592413 | 67592478 | 67592413 | ID=Msa0179880-mRNA-1:cds;Parent=Msa0179880-mRNA-1 |
| chr1_4 | CDS | 67592709 | 67593047 | 67592709 | ID=Msa0179880-mRNA-1:cds;Parent=Msa0179880-mRNA-1 |
| chr1_4 | three_prime_UTR | 67593048 | 67593129 | 67593048 | ID=Msa0179880-mRNA-1:three_prime_utr;Parent=Msa0179880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
