AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180430 MtrunA17_Chr1g0205131 97.506 401 4 4 1 399 1 397 0.0 797
Msa0180430 MtrunA17_Chr6g0456881 40.173 346 109 15 84 393 108 391 9.61e-48 168
Msa0180430 MtrunA17_Chr7g0220931 36.438 365 154 12 41 393 57 355 4.66e-39 143
Msa0180430 MtrunA17_Chr4g0062691 40.625 160 66 4 96 238 120 267 1.16e-20 92.8
Msa0180430 MtrunA17_Chr8g0376571 35.404 161 69 3 109 236 60 218 1.91e-17 84.0
Msa0180430 MtrunA17_Chr4g0040921 55.738 61 27 0 109 169 21 81 4.11e-17 81.6
Msa0180430 MtrunA17_Chr8g0360441 55.738 61 27 0 109 169 53 113 1.12e-16 81.3
Msa0180430 MtrunA17_Chr2g0316391 57.377 61 26 0 109 169 19 79 1.65e-16 79.3
Msa0180430 MtrunA17_Chr2g0325171 53.333 60 28 0 109 168 23 82 1.75e-16 79.7
Msa0180430 MtrunA17_Chr4g0061561 37.037 108 67 1 109 216 56 162 1.88e-13 70.5
Msa0180430 MtrunA17_Chr6g0454781 51.667 60 29 0 109 168 48 107 2.24e-13 70.9
Msa0180430 MtrunA17_Chr7g0219461 44.444 81 45 0 109 189 56 136 1.36e-12 68.6
Msa0180430 MtrunA17_Chr3g0086961 48.333 60 31 0 109 168 56 115 1.45e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180430 AT1G67260.2 42.690 171 67 5 110 253 87 253 6.30e-27 110
Msa0180430 AT1G67260.3 42.690 171 67 5 110 253 87 253 6.30e-27 110
Msa0180430 AT1G67260.1 42.690 171 67 5 110 253 87 253 8.51e-27 110
Msa0180430 AT1G68800.2 68.182 66 21 0 110 175 112 177 3.02e-21 94.7
Msa0180430 AT1G68800.1 68.182 66 21 0 110 175 112 177 3.36e-21 94.4
Msa0180430 AT3G18550.2 30.043 233 104 8 61 235 66 297 1.26e-18 87.8
Msa0180430 AT3G18550.3 31.034 232 101 8 61 234 66 296 2.41e-18 86.7
Msa0180430 AT4G18390.1 39.850 133 68 2 109 236 41 166 2.81e-18 85.9
Msa0180430 AT4G18390.2 39.850 133 68 2 109 236 41 166 2.81e-18 85.9
Msa0180430 AT3G18550.1 29.958 237 103 9 61 235 66 301 3.20e-18 86.7
Msa0180430 AT3G18550.4 29.958 237 103 9 61 235 66 301 3.20e-18 86.7
Msa0180430 AT1G30210.2 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0180430 AT1G30210.1 42.188 128 57 3 109 236 49 159 1.67e-17 83.2
Msa0180430 AT1G53230.1 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0180430 AT1G53230.2 56.452 62 27 0 109 170 48 109 5.22e-17 82.4
Msa0180430 AT3G15030.2 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0180430 AT3G15030.4 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0180430 AT3G15030.3 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0180430 AT3G15030.1 57.377 61 26 0 109 169 44 104 8.00e-17 82.0
Msa0180430 AT2G31070.1 56.667 60 26 0 109 168 28 87 2.51e-16 80.1
Msa0180430 AT3G02150.1 51.667 60 29 0 109 168 73 132 1.63e-12 67.8
Msa0180430 AT3G02150.2 51.667 60 29 0 109 168 73 132 2.23e-12 68.2
Msa0180430 AT5G60970.1 46.667 60 32 0 109 168 62 121 1.85e-11 65.5

Find 72 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCGTCACAACAAAATT+TGG 0.151567 1_4:-68279363 None:intergenic
GATGAAGAAGGGAAATTATT+AGG 0.158390 1_4:-68279099 None:intergenic
TCCCTTGTTCAACTCCAAAT+TGG 0.198049 1_4:+68280195 Msa0180430:CDS
CCTTAGGGATAGTAGGAATT+AGG 0.215420 1_4:-68280124 None:intergenic
AGGAATCCATTATGATTAAA+AGG 0.231280 1_4:+68280060 Msa0180430:CDS
AGAAAAGAAAGGGTACTATT+AGG 0.235751 1_4:-68279138 None:intergenic
TGGAGTTGAACAAGGGAATA+AGG 0.272402 1_4:-68280189 None:intergenic
TTGGAGCTAGTCTCCCAATT+TGG 0.297661 1_4:-68280209 None:intergenic
AAGAAGAGTAGTATTGTTAT+TGG 0.300314 1_4:-68279190 None:intergenic
TTGAAACTTGGTAATTCCTT+AGG 0.318513 1_4:-68280140 None:intergenic
TCATAATCATCATAACCTAT+TGG 0.320855 1_4:+68279995 Msa0180430:CDS
GGATAGTAGGAATTAGGTTT+TGG 0.326225 1_4:-68280118 None:intergenic
AAACAACCAGCAGCAGTTAT+AGG 0.340022 1_4:+68279387 Msa0180430:CDS
GAATGCAACAAGAAGAAATT+AGG 0.347577 1_4:+68279817 Msa0180430:CDS
GAAAAGAAAGGGTACTATTA+GGG 0.366150 1_4:-68279137 None:intergenic
CAAGATAATGGCTACAACTT+TGG 0.372622 1_4:+68279318 Msa0180430:CDS
AGAAGAGTAGTATTGTTATT+GGG 0.374456 1_4:-68279189 None:intergenic
ATGAAGAAGGGAAATTATTA+GGG 0.385216 1_4:-68279098 None:intergenic
CCCTTGTTCAACTCCAAATT+GGG 0.387307 1_4:+68280196 Msa0180430:CDS
GCAATGTTTGAACAAGATAA+TGG 0.390494 1_4:+68279306 Msa0180430:CDS
TAGGTATTTCACTATCCAAT+AGG 0.395659 1_4:-68280010 None:intergenic
TTTCCTCCTATAACTGCTGC+TGG 0.420270 1_4:-68279393 None:intergenic
AAAAGAAGGGTTACTACTAT+AGG 0.421997 1_4:-68279973 None:intergenic
GGTAATTCCTTAGGGATAGT+AGG 0.423994 1_4:-68280131 None:intergenic
GTTGAATCTGCACCAGGTCC+AGG 0.426040 1_4:-68279843 None:intergenic
AGCCACTCAAGTGTGTTACT+TGG 0.429932 1_4:-68279534 None:intergenic
CAATCTGCAAAATTAGCATC+AGG 0.430784 1_4:-68279273 None:intergenic
TTATAGGAGGAAAGAAAGAT+AGG 0.430839 1_4:+68279403 Msa0180430:CDS
TTAATATTGTGGTTGAAACT+TGG 0.430928 1_4:-68280152 None:intergenic
CTAAAGGGAGAAAATTGAAA+TGG 0.439828 1_4:+68279703 Msa0180430:CDS
ATGGTAGTTGTTCTTCTAAA+GGG 0.441018 1_4:+68279688 Msa0180430:CDS
GAAGAAGAAGATGATGAAGA+AGG 0.449349 1_4:-68279111 None:intergenic
AATCATTATTATTAATATTG+TGG 0.455465 1_4:-68280163 None:intergenic
TGAAACTTGGTAATTCCTTA+GGG 0.456765 1_4:-68280139 None:intergenic
TCCGGCGGTGGTGGCGGCGA+TGG 0.458548 1_4:+68279669 Msa0180430:CDS
GATGGTAGTTGTTCTTCTAA+AGG 0.462971 1_4:+68279687 Msa0180430:CDS
TTATGATGATTATGAAAAGA+AGG 0.467263 1_4:-68279987 None:intergenic
AAGAAGAAGATGATGAAGAA+GGG 0.472483 1_4:-68279110 None:intergenic
AGTGGCTATTCCACAAAAGT+TGG 0.483262 1_4:-68280228 None:intergenic
TCAGTTTCAGTACTATCAAC+AGG 0.489731 1_4:-68279912 None:intergenic
GTCACAACAAAATTTGGAAT+CGG 0.493121 1_4:-68279357 None:intergenic
ACCATCGCCGCCACCACCGC+CGG 0.517778 1_4:-68279670 None:intergenic
ATTGTCAATGAGAAAAGAAA+GGG 0.521480 1_4:-68279148 None:intergenic
TATGATGATTATGAAAAGAA+GGG 0.526879 1_4:-68279986 None:intergenic
GATTGTCAATGAGAAAAGAA+AGG 0.527029 1_4:-68279149 None:intergenic
AGTGAAATACCTAGAGATCA+TGG 0.535750 1_4:+68280020 Msa0180430:CDS
TTAAATCCACCATGATCTCT+AGG 0.537094 1_4:-68280029 None:intergenic
GTATTTGTTGAATCTGCACC+AGG 0.542255 1_4:-68279849 None:intergenic
TGGTGGATTTAATGTGATTG+AGG 0.542326 1_4:+68280040 Msa0180430:CDS
CCTAATTCCTACTATCCCTA+AGG 0.544884 1_4:+68280124 Msa0180430:CDS
TCCCAATTTGGAGTTGAACA+AGG 0.545085 1_4:-68280197 None:intergenic
CAAGAGCAAGAGCTAGAGAA+AGG 0.553192 1_4:+68279766 Msa0180430:CDS
GCAAAATTAGCATCAGGGAA+TGG 0.555133 1_4:-68279267 None:intergenic
CAGTAAGATTCACACATCAC+AGG 0.558791 1_4:+68279428 Msa0180430:CDS
GAAATTAGGTACCCTGGACC+TGG 0.562470 1_4:+68279831 Msa0180430:CDS
TTGAATCTGCACCAGGTCCA+GGG 0.571969 1_4:-68279842 None:intergenic
CTACATGCTTCTTGAATCCG+TGG 0.574833 1_4:+68280261 Msa0180430:CDS
CAAGAAGAAATTAGGTACCC+TGG 0.600461 1_4:+68279825 Msa0180430:CDS
AAACTGAGGCTTATGCAAGA+TGG 0.603501 1_4:+68279928 Msa0180430:CDS
TGTTGATAGTACTGAAACTG+AGG 0.605008 1_4:+68279914 Msa0180430:CDS
CCCAATTTGGAGTTGAACAA+GGG 0.612112 1_4:-68280196 None:intergenic
CACAGGGTTTGAGAGACAGA+AGG 0.612414 1_4:+68279445 Msa0180430:CDS
ACTTAGTTAATTACTTACCA+CGG 0.614778 1_4:-68280278 None:intergenic
CAACCAGCAGCAGTTATAGG+AGG 0.626000 1_4:+68279390 Msa0180430:CDS
AATCTGCAAAATTAGCATCA+GGG 0.626917 1_4:-68279272 None:intergenic
TGTTACAAGATGTGTAGCAG+TGG 0.627912 1_4:+68279792 Msa0180430:CDS
ACAGGGTTTGAGAGACAGAA+GGG 0.629239 1_4:+68279446 Msa0180430:CDS
GCATGTAGATAGATTCATAG+TGG 0.634816 1_4:-68280246 None:intergenic
AGTAAGATTCACACATCACA+GGG 0.651645 1_4:+68279429 Msa0180430:CDS
TGATGTGTTGATGTAGTGAA+AGG 0.657369 1_4:-68279234 None:intergenic
AACCAAGTAACACACTTGAG+TGG 0.665918 1_4:+68279532 Msa0180430:CDS
GAAATACCTAGAGATCATGG+TGG 0.750657 1_4:+68280023 Msa0180430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTATTATTAATATTG+TGG - chr1_4:68280166-68280185 None:intergenic 10.0%
!! AATCATTATTATTAATATTG+TGG - chr1_4:68280166-68280185 None:intergenic 10.0%
!!! TGCTATTTGAATCAAAAAAT+GGG - chr1_4:68279638-68279657 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG - chr1_4:68279639-68279658 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG - chr1_4:68279989-68280008 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG - chr1_4:68279990-68280009 None:intergenic 20.0%
!!! TGCTATTTGAATCAAAAAAT+GGG - chr1_4:68279638-68279657 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG - chr1_4:68279639-68279658 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG - chr1_4:68279989-68280008 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG - chr1_4:68279990-68280009 None:intergenic 20.0%
! ATGAAGAAGGGAAATTATTA+GGG - chr1_4:68279101-68279120 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG - chr1_4:68279151-68279170 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG - chr1_4:68279174-68279193 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG - chr1_4:68279192-68279211 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG - chr1_4:68279193-68279212 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG + chr1_4:68279651-68279670 Msa0180430:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG + chr1_4:68279995-68280014 Msa0180430:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG + chr1_4:68280060-68280079 Msa0180430:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG - chr1_4:68280069-68280088 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG - chr1_4:68280155-68280174 None:intergenic 25.0%
! ATGAAGAAGGGAAATTATTA+GGG - chr1_4:68279101-68279120 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG - chr1_4:68279151-68279170 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG - chr1_4:68279174-68279193 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG - chr1_4:68279192-68279211 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG - chr1_4:68279193-68279212 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG + chr1_4:68279651-68279670 Msa0180430:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG + chr1_4:68279995-68280014 Msa0180430:CDS 25.0%
! AGGAATCCATTATGATTAAA+AGG + chr1_4:68280060-68280079 Msa0180430:CDS 25.0%
!! CATGTTCCTTTTAATCATAA+TGG - chr1_4:68280069-68280088 None:intergenic 25.0%
! TTAATATTGTGGTTGAAACT+TGG - chr1_4:68280155-68280174 None:intergenic 25.0%
GATGAAGAAGGGAAATTATT+AGG - chr1_4:68279102-68279121 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG - chr1_4:68279113-68279132 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG - chr1_4:68279140-68279159 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG - chr1_4:68279141-68279160 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG - chr1_4:68279152-68279171 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG - chr1_4:68279275-68279294 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG + chr1_4:68279306-68279325 Msa0180430:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG - chr1_4:68279360-68279379 None:intergenic 30.0%
!! GATTCCAAATTTTGTTGTGA+CGG + chr1_4:68279359-68279378 Msa0180430:CDS 30.0%
TTATAGGAGGAAAGAAAGAT+AGG + chr1_4:68279403-68279422 Msa0180430:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG + chr1_4:68279688-68279707 Msa0180430:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG + chr1_4:68279703-68279722 Msa0180430:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG + chr1_4:68279817-68279836 Msa0180430:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG - chr1_4:68279976-68279995 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG - chr1_4:68280013-68280032 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG - chr1_4:68280142-68280161 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG - chr1_4:68280143-68280162 None:intergenic 30.0%
GATGAAGAAGGGAAATTATT+AGG - chr1_4:68279102-68279121 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG - chr1_4:68279113-68279132 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG - chr1_4:68279140-68279159 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG - chr1_4:68279141-68279160 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG - chr1_4:68279152-68279171 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG - chr1_4:68279275-68279294 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG + chr1_4:68279306-68279325 Msa0180430:CDS 30.0%
! GTCACAACAAAATTTGGAAT+CGG - chr1_4:68279360-68279379 None:intergenic 30.0%
!! GATTCCAAATTTTGTTGTGA+CGG + chr1_4:68279359-68279378 Msa0180430:CDS 30.0%
TTATAGGAGGAAAGAAAGAT+AGG + chr1_4:68279403-68279422 Msa0180430:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG + chr1_4:68279688-68279707 Msa0180430:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG + chr1_4:68279703-68279722 Msa0180430:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG + chr1_4:68279817-68279836 Msa0180430:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG - chr1_4:68279976-68279995 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG - chr1_4:68280013-68280032 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG - chr1_4:68280142-68280161 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG - chr1_4:68280143-68280162 None:intergenic 30.0%
GAAGAAGAAGATGATGAAGA+AGG - chr1_4:68279114-68279133 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG - chr1_4:68279237-68279256 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG - chr1_4:68279276-68279295 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG + chr1_4:68279318-68279337 Msa0180430:CDS 35.0%
AGTAAGATTCACACATCACA+GGG + chr1_4:68279429-68279448 Msa0180430:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG + chr1_4:68279687-68279706 Msa0180430:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG - chr1_4:68279915-68279934 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG + chr1_4:68279914-68279933 Msa0180430:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG + chr1_4:68280020-68280039 Msa0180430:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG - chr1_4:68280032-68280051 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG + chr1_4:68280040-68280059 Msa0180430:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG - chr1_4:68280121-68280140 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG - chr1_4:68280249-68280268 None:intergenic 35.0%
GAAGAAGAAGATGATGAAGA+AGG - chr1_4:68279114-68279133 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG - chr1_4:68279237-68279256 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG - chr1_4:68279276-68279295 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG + chr1_4:68279318-68279337 Msa0180430:CDS 35.0%
AGTAAGATTCACACATCACA+GGG + chr1_4:68279429-68279448 Msa0180430:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG + chr1_4:68279687-68279706 Msa0180430:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG - chr1_4:68279915-68279934 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG + chr1_4:68279914-68279933 Msa0180430:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG + chr1_4:68280020-68280039 Msa0180430:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG - chr1_4:68280032-68280051 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG + chr1_4:68280040-68280059 Msa0180430:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG - chr1_4:68280121-68280140 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG - chr1_4:68280249-68280268 None:intergenic 35.0%
GCAAAATTAGCATCAGGGAA+TGG - chr1_4:68279270-68279289 None:intergenic 40.0%
TGCTCCGTCACAACAAAATT+TGG - chr1_4:68279366-68279385 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG + chr1_4:68279387-68279406 Msa0180430:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG + chr1_4:68279428-68279447 Msa0180430:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG + chr1_4:68279532-68279551 Msa0180430:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG + chr1_4:68279654-68279673 Msa0180430:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG + chr1_4:68279792-68279811 Msa0180430:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG + chr1_4:68279825-68279844 Msa0180430:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG - chr1_4:68279852-68279871 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG + chr1_4:68279928-68279947 Msa0180430:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG + chr1_4:68280023-68280042 Msa0180430:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG - chr1_4:68280127-68280146 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG + chr1_4:68280124-68280143 Msa0180430:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG - chr1_4:68280134-68280153 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG - chr1_4:68280192-68280211 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG + chr1_4:68280195-68280214 Msa0180430:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG - chr1_4:68280199-68280218 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG + chr1_4:68280196-68280215 Msa0180430:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG - chr1_4:68280200-68280219 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG - chr1_4:68280231-68280250 None:intergenic 40.0%
GCAAAATTAGCATCAGGGAA+TGG - chr1_4:68279270-68279289 None:intergenic 40.0%
TGCTCCGTCACAACAAAATT+TGG - chr1_4:68279366-68279385 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG + chr1_4:68279387-68279406 Msa0180430:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG + chr1_4:68279428-68279447 Msa0180430:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG + chr1_4:68279532-68279551 Msa0180430:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG + chr1_4:68279654-68279673 Msa0180430:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG + chr1_4:68279792-68279811 Msa0180430:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG + chr1_4:68279825-68279844 Msa0180430:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG - chr1_4:68279852-68279871 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG + chr1_4:68279928-68279947 Msa0180430:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG + chr1_4:68280023-68280042 Msa0180430:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG - chr1_4:68280127-68280146 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG + chr1_4:68280124-68280143 Msa0180430:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG - chr1_4:68280134-68280153 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG - chr1_4:68280192-68280211 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG + chr1_4:68280195-68280214 Msa0180430:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG - chr1_4:68280199-68280218 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG + chr1_4:68280196-68280215 Msa0180430:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG - chr1_4:68280200-68280219 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG - chr1_4:68280231-68280250 None:intergenic 40.0%
TTTCCTCCTATAACTGCTGC+TGG - chr1_4:68279396-68279415 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG + chr1_4:68279446-68279465 Msa0180430:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG - chr1_4:68279537-68279556 None:intergenic 45.0%
! AACAAATCATTTTCCGGCGG+TGG + chr1_4:68279657-68279676 Msa0180430:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG + chr1_4:68279766-68279785 Msa0180430:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG - chr1_4:68280212-68280231 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG + chr1_4:68280218-68280237 Msa0180430:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG + chr1_4:68280261-68280280 Msa0180430:CDS 45.0%
TTTCCTCCTATAACTGCTGC+TGG - chr1_4:68279396-68279415 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG + chr1_4:68279446-68279465 Msa0180430:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG - chr1_4:68279537-68279556 None:intergenic 45.0%
! AACAAATCATTTTCCGGCGG+TGG + chr1_4:68279657-68279676 Msa0180430:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG + chr1_4:68279766-68279785 Msa0180430:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG - chr1_4:68280212-68280231 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG + chr1_4:68280218-68280237 Msa0180430:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG + chr1_4:68280261-68280280 Msa0180430:CDS 45.0%
CAACCAGCAGCAGTTATAGG+AGG + chr1_4:68279390-68279409 Msa0180430:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG + chr1_4:68279445-68279464 Msa0180430:CDS 50.0%
! AAATCATTTTCCGGCGGTGG+TGG + chr1_4:68279660-68279679 Msa0180430:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG + chr1_4:68279831-68279850 Msa0180430:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG - chr1_4:68279845-68279864 None:intergenic 50.0%
CAACCAGCAGCAGTTATAGG+AGG + chr1_4:68279390-68279409 Msa0180430:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG + chr1_4:68279445-68279464 Msa0180430:CDS 50.0%
! AAATCATTTTCCGGCGGTGG+TGG + chr1_4:68279660-68279679 Msa0180430:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG + chr1_4:68279831-68279850 Msa0180430:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG - chr1_4:68279845-68279864 None:intergenic 50.0%
GTTGAATCTGCACCAGGTCC+AGG - chr1_4:68279846-68279865 None:intergenic 55.0%
GTTGAATCTGCACCAGGTCC+AGG - chr1_4:68279846-68279865 None:intergenic 55.0%
!! TCATTTTCCGGCGGTGGTGG+CGG + chr1_4:68279663-68279682 Msa0180430:CDS 60.0%
!! TCATTTTCCGGCGGTGGTGG+CGG + chr1_4:68279663-68279682 Msa0180430:CDS 60.0%
ACCATCGCCGCCACCACCGC+CGG - chr1_4:68279673-68279692 None:intergenic 75.0%
ACCATCGCCGCCACCACCGC+CGG - chr1_4:68279673-68279692 None:intergenic 75.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG + chr1_4:68279669-68279688 Msa0180430:CDS 80.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG + chr1_4:68279669-68279688 Msa0180430:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68279087 68280286 68279087 ID=Msa0180430;Name=Msa0180430
chr1_4 mRNA 68279087 68280286 68279087 ID=Msa0180430-mRNA-1;Parent=Msa0180430;Name=Msa0180430-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|399
chr1_4 exon 68279087 68280286 68279087 ID=Msa0180430-mRNA-1:exon:22539;Parent=Msa0180430-mRNA-1
chr1_4 CDS 68279087 68280286 68279087 ID=Msa0180430-mRNA-1:cds;Parent=Msa0180430-mRNA-1
Gene Sequence

>Msa0180430

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTTTGTTGTGACGGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGCGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAAAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA

Protein sequence

>Msa0180430

MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNFVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW*