Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180430 | KEH43846.1 | 97.506 | 401 | 4 | 4 | 1 | 399 | 93 | 489 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180430 | sp|Q9FYG7|TCP1_ARATH | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 8.37e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180430 | A0A072VQD1 | 97.506 | 401 | 4 | 4 | 1 | 399 | 93 | 489 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0180430 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180430 | MtrunA17_Chr1g0205131 | 97.506 | 401 | 4 | 4 | 1 | 399 | 1 | 397 | 0.0 | 797 |
| Msa0180430 | MtrunA17_Chr6g0456881 | 40.173 | 346 | 109 | 15 | 84 | 393 | 108 | 391 | 9.61e-48 | 168 |
| Msa0180430 | MtrunA17_Chr7g0220931 | 36.438 | 365 | 154 | 12 | 41 | 393 | 57 | 355 | 4.66e-39 | 143 |
| Msa0180430 | MtrunA17_Chr4g0062691 | 40.625 | 160 | 66 | 4 | 96 | 238 | 120 | 267 | 1.16e-20 | 92.8 |
| Msa0180430 | MtrunA17_Chr8g0376571 | 35.404 | 161 | 69 | 3 | 109 | 236 | 60 | 218 | 1.91e-17 | 84.0 |
| Msa0180430 | MtrunA17_Chr4g0040921 | 55.738 | 61 | 27 | 0 | 109 | 169 | 21 | 81 | 4.11e-17 | 81.6 |
| Msa0180430 | MtrunA17_Chr8g0360441 | 55.738 | 61 | 27 | 0 | 109 | 169 | 53 | 113 | 1.12e-16 | 81.3 |
| Msa0180430 | MtrunA17_Chr2g0316391 | 57.377 | 61 | 26 | 0 | 109 | 169 | 19 | 79 | 1.65e-16 | 79.3 |
| Msa0180430 | MtrunA17_Chr2g0325171 | 53.333 | 60 | 28 | 0 | 109 | 168 | 23 | 82 | 1.75e-16 | 79.7 |
| Msa0180430 | MtrunA17_Chr4g0061561 | 37.037 | 108 | 67 | 1 | 109 | 216 | 56 | 162 | 1.88e-13 | 70.5 |
| Msa0180430 | MtrunA17_Chr6g0454781 | 51.667 | 60 | 29 | 0 | 109 | 168 | 48 | 107 | 2.24e-13 | 70.9 |
| Msa0180430 | MtrunA17_Chr7g0219461 | 44.444 | 81 | 45 | 0 | 109 | 189 | 56 | 136 | 1.36e-12 | 68.6 |
| Msa0180430 | MtrunA17_Chr3g0086961 | 48.333 | 60 | 31 | 0 | 109 | 168 | 56 | 115 | 1.45e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180430 | AT1G67260.2 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 6.30e-27 | 110 |
| Msa0180430 | AT1G67260.3 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 6.30e-27 | 110 |
| Msa0180430 | AT1G67260.1 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 8.51e-27 | 110 |
| Msa0180430 | AT1G68800.2 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.02e-21 | 94.7 |
| Msa0180430 | AT1G68800.1 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.36e-21 | 94.4 |
| Msa0180430 | AT3G18550.2 | 30.043 | 233 | 104 | 8 | 61 | 235 | 66 | 297 | 1.26e-18 | 87.8 |
| Msa0180430 | AT3G18550.3 | 31.034 | 232 | 101 | 8 | 61 | 234 | 66 | 296 | 2.41e-18 | 86.7 |
| Msa0180430 | AT4G18390.1 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 2.81e-18 | 85.9 |
| Msa0180430 | AT4G18390.2 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 2.81e-18 | 85.9 |
| Msa0180430 | AT3G18550.1 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.20e-18 | 86.7 |
| Msa0180430 | AT3G18550.4 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.20e-18 | 86.7 |
| Msa0180430 | AT1G30210.2 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 1.67e-17 | 83.2 |
| Msa0180430 | AT1G30210.1 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 1.67e-17 | 83.2 |
| Msa0180430 | AT1G53230.1 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.22e-17 | 82.4 |
| Msa0180430 | AT1G53230.2 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.22e-17 | 82.4 |
| Msa0180430 | AT3G15030.2 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 8.00e-17 | 82.0 |
| Msa0180430 | AT3G15030.4 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 8.00e-17 | 82.0 |
| Msa0180430 | AT3G15030.3 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 8.00e-17 | 82.0 |
| Msa0180430 | AT3G15030.1 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 8.00e-17 | 82.0 |
| Msa0180430 | AT2G31070.1 | 56.667 | 60 | 26 | 0 | 109 | 168 | 28 | 87 | 2.51e-16 | 80.1 |
| Msa0180430 | AT3G02150.1 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 1.63e-12 | 67.8 |
| Msa0180430 | AT3G02150.2 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.23e-12 | 68.2 |
| Msa0180430 | AT5G60970.1 | 46.667 | 60 | 32 | 0 | 109 | 168 | 62 | 121 | 1.85e-11 | 65.5 |
Find 72 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCGTCACAACAAAATT+TGG | 0.151567 | 1_4:-68279363 | None:intergenic |
| GATGAAGAAGGGAAATTATT+AGG | 0.158390 | 1_4:-68279099 | None:intergenic |
| TCCCTTGTTCAACTCCAAAT+TGG | 0.198049 | 1_4:+68280195 | Msa0180430:CDS |
| CCTTAGGGATAGTAGGAATT+AGG | 0.215420 | 1_4:-68280124 | None:intergenic |
| AGGAATCCATTATGATTAAA+AGG | 0.231280 | 1_4:+68280060 | Msa0180430:CDS |
| AGAAAAGAAAGGGTACTATT+AGG | 0.235751 | 1_4:-68279138 | None:intergenic |
| TGGAGTTGAACAAGGGAATA+AGG | 0.272402 | 1_4:-68280189 | None:intergenic |
| TTGGAGCTAGTCTCCCAATT+TGG | 0.297661 | 1_4:-68280209 | None:intergenic |
| AAGAAGAGTAGTATTGTTAT+TGG | 0.300314 | 1_4:-68279190 | None:intergenic |
| TTGAAACTTGGTAATTCCTT+AGG | 0.318513 | 1_4:-68280140 | None:intergenic |
| TCATAATCATCATAACCTAT+TGG | 0.320855 | 1_4:+68279995 | Msa0180430:CDS |
| GGATAGTAGGAATTAGGTTT+TGG | 0.326225 | 1_4:-68280118 | None:intergenic |
| AAACAACCAGCAGCAGTTAT+AGG | 0.340022 | 1_4:+68279387 | Msa0180430:CDS |
| GAATGCAACAAGAAGAAATT+AGG | 0.347577 | 1_4:+68279817 | Msa0180430:CDS |
| GAAAAGAAAGGGTACTATTA+GGG | 0.366150 | 1_4:-68279137 | None:intergenic |
| CAAGATAATGGCTACAACTT+TGG | 0.372622 | 1_4:+68279318 | Msa0180430:CDS |
| AGAAGAGTAGTATTGTTATT+GGG | 0.374456 | 1_4:-68279189 | None:intergenic |
| ATGAAGAAGGGAAATTATTA+GGG | 0.385216 | 1_4:-68279098 | None:intergenic |
| CCCTTGTTCAACTCCAAATT+GGG | 0.387307 | 1_4:+68280196 | Msa0180430:CDS |
| GCAATGTTTGAACAAGATAA+TGG | 0.390494 | 1_4:+68279306 | Msa0180430:CDS |
| TAGGTATTTCACTATCCAAT+AGG | 0.395659 | 1_4:-68280010 | None:intergenic |
| TTTCCTCCTATAACTGCTGC+TGG | 0.420270 | 1_4:-68279393 | None:intergenic |
| AAAAGAAGGGTTACTACTAT+AGG | 0.421997 | 1_4:-68279973 | None:intergenic |
| GGTAATTCCTTAGGGATAGT+AGG | 0.423994 | 1_4:-68280131 | None:intergenic |
| GTTGAATCTGCACCAGGTCC+AGG | 0.426040 | 1_4:-68279843 | None:intergenic |
| AGCCACTCAAGTGTGTTACT+TGG | 0.429932 | 1_4:-68279534 | None:intergenic |
| CAATCTGCAAAATTAGCATC+AGG | 0.430784 | 1_4:-68279273 | None:intergenic |
| TTATAGGAGGAAAGAAAGAT+AGG | 0.430839 | 1_4:+68279403 | Msa0180430:CDS |
| TTAATATTGTGGTTGAAACT+TGG | 0.430928 | 1_4:-68280152 | None:intergenic |
| CTAAAGGGAGAAAATTGAAA+TGG | 0.439828 | 1_4:+68279703 | Msa0180430:CDS |
| ATGGTAGTTGTTCTTCTAAA+GGG | 0.441018 | 1_4:+68279688 | Msa0180430:CDS |
| GAAGAAGAAGATGATGAAGA+AGG | 0.449349 | 1_4:-68279111 | None:intergenic |
| AATCATTATTATTAATATTG+TGG | 0.455465 | 1_4:-68280163 | None:intergenic |
| TGAAACTTGGTAATTCCTTA+GGG | 0.456765 | 1_4:-68280139 | None:intergenic |
| TCCGGCGGTGGTGGCGGCGA+TGG | 0.458548 | 1_4:+68279669 | Msa0180430:CDS |
| GATGGTAGTTGTTCTTCTAA+AGG | 0.462971 | 1_4:+68279687 | Msa0180430:CDS |
| TTATGATGATTATGAAAAGA+AGG | 0.467263 | 1_4:-68279987 | None:intergenic |
| AAGAAGAAGATGATGAAGAA+GGG | 0.472483 | 1_4:-68279110 | None:intergenic |
| AGTGGCTATTCCACAAAAGT+TGG | 0.483262 | 1_4:-68280228 | None:intergenic |
| TCAGTTTCAGTACTATCAAC+AGG | 0.489731 | 1_4:-68279912 | None:intergenic |
| GTCACAACAAAATTTGGAAT+CGG | 0.493121 | 1_4:-68279357 | None:intergenic |
| ACCATCGCCGCCACCACCGC+CGG | 0.517778 | 1_4:-68279670 | None:intergenic |
| ATTGTCAATGAGAAAAGAAA+GGG | 0.521480 | 1_4:-68279148 | None:intergenic |
| TATGATGATTATGAAAAGAA+GGG | 0.526879 | 1_4:-68279986 | None:intergenic |
| GATTGTCAATGAGAAAAGAA+AGG | 0.527029 | 1_4:-68279149 | None:intergenic |
| AGTGAAATACCTAGAGATCA+TGG | 0.535750 | 1_4:+68280020 | Msa0180430:CDS |
| TTAAATCCACCATGATCTCT+AGG | 0.537094 | 1_4:-68280029 | None:intergenic |
| GTATTTGTTGAATCTGCACC+AGG | 0.542255 | 1_4:-68279849 | None:intergenic |
| TGGTGGATTTAATGTGATTG+AGG | 0.542326 | 1_4:+68280040 | Msa0180430:CDS |
| CCTAATTCCTACTATCCCTA+AGG | 0.544884 | 1_4:+68280124 | Msa0180430:CDS |
| TCCCAATTTGGAGTTGAACA+AGG | 0.545085 | 1_4:-68280197 | None:intergenic |
| CAAGAGCAAGAGCTAGAGAA+AGG | 0.553192 | 1_4:+68279766 | Msa0180430:CDS |
| GCAAAATTAGCATCAGGGAA+TGG | 0.555133 | 1_4:-68279267 | None:intergenic |
| CAGTAAGATTCACACATCAC+AGG | 0.558791 | 1_4:+68279428 | Msa0180430:CDS |
| GAAATTAGGTACCCTGGACC+TGG | 0.562470 | 1_4:+68279831 | Msa0180430:CDS |
| TTGAATCTGCACCAGGTCCA+GGG | 0.571969 | 1_4:-68279842 | None:intergenic |
| CTACATGCTTCTTGAATCCG+TGG | 0.574833 | 1_4:+68280261 | Msa0180430:CDS |
| CAAGAAGAAATTAGGTACCC+TGG | 0.600461 | 1_4:+68279825 | Msa0180430:CDS |
| AAACTGAGGCTTATGCAAGA+TGG | 0.603501 | 1_4:+68279928 | Msa0180430:CDS |
| TGTTGATAGTACTGAAACTG+AGG | 0.605008 | 1_4:+68279914 | Msa0180430:CDS |
| CCCAATTTGGAGTTGAACAA+GGG | 0.612112 | 1_4:-68280196 | None:intergenic |
| CACAGGGTTTGAGAGACAGA+AGG | 0.612414 | 1_4:+68279445 | Msa0180430:CDS |
| ACTTAGTTAATTACTTACCA+CGG | 0.614778 | 1_4:-68280278 | None:intergenic |
| CAACCAGCAGCAGTTATAGG+AGG | 0.626000 | 1_4:+68279390 | Msa0180430:CDS |
| AATCTGCAAAATTAGCATCA+GGG | 0.626917 | 1_4:-68279272 | None:intergenic |
| TGTTACAAGATGTGTAGCAG+TGG | 0.627912 | 1_4:+68279792 | Msa0180430:CDS |
| ACAGGGTTTGAGAGACAGAA+GGG | 0.629239 | 1_4:+68279446 | Msa0180430:CDS |
| GCATGTAGATAGATTCATAG+TGG | 0.634816 | 1_4:-68280246 | None:intergenic |
| AGTAAGATTCACACATCACA+GGG | 0.651645 | 1_4:+68279429 | Msa0180430:CDS |
| TGATGTGTTGATGTAGTGAA+AGG | 0.657369 | 1_4:-68279234 | None:intergenic |
| AACCAAGTAACACACTTGAG+TGG | 0.665918 | 1_4:+68279532 | Msa0180430:CDS |
| GAAATACCTAGAGATCATGG+TGG | 0.750657 | 1_4:+68280023 | Msa0180430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTATTATTAATATTG+TGG | - | chr1_4:68280166-68280185 | None:intergenic | 10.0% |
| !! | AATCATTATTATTAATATTG+TGG | - | chr1_4:68280166-68280185 | None:intergenic | 10.0% |
| !!! | TGCTATTTGAATCAAAAAAT+GGG | - | chr1_4:68279638-68279657 | None:intergenic | 20.0% |
| !!! | TTGCTATTTGAATCAAAAAA+TGG | - | chr1_4:68279639-68279658 | None:intergenic | 20.0% |
| !! | TATGATGATTATGAAAAGAA+GGG | - | chr1_4:68279989-68280008 | None:intergenic | 20.0% |
| !! | TTATGATGATTATGAAAAGA+AGG | - | chr1_4:68279990-68280009 | None:intergenic | 20.0% |
| !!! | TGCTATTTGAATCAAAAAAT+GGG | - | chr1_4:68279638-68279657 | None:intergenic | 20.0% |
| !!! | TTGCTATTTGAATCAAAAAA+TGG | - | chr1_4:68279639-68279658 | None:intergenic | 20.0% |
| !! | TATGATGATTATGAAAAGAA+GGG | - | chr1_4:68279989-68280008 | None:intergenic | 20.0% |
| !! | TTATGATGATTATGAAAAGA+AGG | - | chr1_4:68279990-68280009 | None:intergenic | 20.0% |
| ! | ATGAAGAAGGGAAATTATTA+GGG | - | chr1_4:68279101-68279120 | None:intergenic | 25.0% |
| ! | ATTGTCAATGAGAAAAGAAA+GGG | - | chr1_4:68279151-68279170 | None:intergenic | 25.0% |
| !! | TTGGGAAAATCATTATTTTC+AGG | - | chr1_4:68279174-68279193 | None:intergenic | 25.0% |
| !! | AGAAGAGTAGTATTGTTATT+GGG | - | chr1_4:68279192-68279211 | None:intergenic | 25.0% |
| ! | AAGAAGAGTAGTATTGTTAT+TGG | - | chr1_4:68279193-68279212 | None:intergenic | 25.0% |
| !! | AATAGCAACAAATCATTTTC+CGG | + | chr1_4:68279651-68279670 | Msa0180430:CDS | 25.0% |
| ! | TCATAATCATCATAACCTAT+TGG | + | chr1_4:68279995-68280014 | Msa0180430:CDS | 25.0% |
| ! | AGGAATCCATTATGATTAAA+AGG | + | chr1_4:68280060-68280079 | Msa0180430:CDS | 25.0% |
| !! | CATGTTCCTTTTAATCATAA+TGG | - | chr1_4:68280069-68280088 | None:intergenic | 25.0% |
| ! | TTAATATTGTGGTTGAAACT+TGG | - | chr1_4:68280155-68280174 | None:intergenic | 25.0% |
| ! | ATGAAGAAGGGAAATTATTA+GGG | - | chr1_4:68279101-68279120 | None:intergenic | 25.0% |
| ! | ATTGTCAATGAGAAAAGAAA+GGG | - | chr1_4:68279151-68279170 | None:intergenic | 25.0% |
| !! | TTGGGAAAATCATTATTTTC+AGG | - | chr1_4:68279174-68279193 | None:intergenic | 25.0% |
| !! | AGAAGAGTAGTATTGTTATT+GGG | - | chr1_4:68279192-68279211 | None:intergenic | 25.0% |
| ! | AAGAAGAGTAGTATTGTTAT+TGG | - | chr1_4:68279193-68279212 | None:intergenic | 25.0% |
| !! | AATAGCAACAAATCATTTTC+CGG | + | chr1_4:68279651-68279670 | Msa0180430:CDS | 25.0% |
| ! | TCATAATCATCATAACCTAT+TGG | + | chr1_4:68279995-68280014 | Msa0180430:CDS | 25.0% |
| ! | AGGAATCCATTATGATTAAA+AGG | + | chr1_4:68280060-68280079 | Msa0180430:CDS | 25.0% |
| !! | CATGTTCCTTTTAATCATAA+TGG | - | chr1_4:68280069-68280088 | None:intergenic | 25.0% |
| ! | TTAATATTGTGGTTGAAACT+TGG | - | chr1_4:68280155-68280174 | None:intergenic | 25.0% |
| GATGAAGAAGGGAAATTATT+AGG | - | chr1_4:68279102-68279121 | None:intergenic | 30.0% | |
| AAGAAGAAGATGATGAAGAA+GGG | - | chr1_4:68279113-68279132 | None:intergenic | 30.0% | |
| !! | GAAAAGAAAGGGTACTATTA+GGG | - | chr1_4:68279140-68279159 | None:intergenic | 30.0% |
| !! | AGAAAAGAAAGGGTACTATT+AGG | - | chr1_4:68279141-68279160 | None:intergenic | 30.0% |
| GATTGTCAATGAGAAAAGAA+AGG | - | chr1_4:68279152-68279171 | None:intergenic | 30.0% | |
| AATCTGCAAAATTAGCATCA+GGG | - | chr1_4:68279275-68279294 | None:intergenic | 30.0% | |
| GCAATGTTTGAACAAGATAA+TGG | + | chr1_4:68279306-68279325 | Msa0180430:CDS | 30.0% | |
| ! | GTCACAACAAAATTTGGAAT+CGG | - | chr1_4:68279360-68279379 | None:intergenic | 30.0% |
| !! | GATTCCAAATTTTGTTGTGA+CGG | + | chr1_4:68279359-68279378 | Msa0180430:CDS | 30.0% |
| TTATAGGAGGAAAGAAAGAT+AGG | + | chr1_4:68279403-68279422 | Msa0180430:CDS | 30.0% | |
| ATGGTAGTTGTTCTTCTAAA+GGG | + | chr1_4:68279688-68279707 | Msa0180430:CDS | 30.0% | |
| CTAAAGGGAGAAAATTGAAA+TGG | + | chr1_4:68279703-68279722 | Msa0180430:CDS | 30.0% | |
| GAATGCAACAAGAAGAAATT+AGG | + | chr1_4:68279817-68279836 | Msa0180430:CDS | 30.0% | |
| AAAAGAAGGGTTACTACTAT+AGG | - | chr1_4:68279976-68279995 | None:intergenic | 30.0% | |
| TAGGTATTTCACTATCCAAT+AGG | - | chr1_4:68280013-68280032 | None:intergenic | 30.0% | |
| ! | TGAAACTTGGTAATTCCTTA+GGG | - | chr1_4:68280142-68280161 | None:intergenic | 30.0% |
| ! | TTGAAACTTGGTAATTCCTT+AGG | - | chr1_4:68280143-68280162 | None:intergenic | 30.0% |
| GATGAAGAAGGGAAATTATT+AGG | - | chr1_4:68279102-68279121 | None:intergenic | 30.0% | |
| AAGAAGAAGATGATGAAGAA+GGG | - | chr1_4:68279113-68279132 | None:intergenic | 30.0% | |
| !! | GAAAAGAAAGGGTACTATTA+GGG | - | chr1_4:68279140-68279159 | None:intergenic | 30.0% |
| !! | AGAAAAGAAAGGGTACTATT+AGG | - | chr1_4:68279141-68279160 | None:intergenic | 30.0% |
| GATTGTCAATGAGAAAAGAA+AGG | - | chr1_4:68279152-68279171 | None:intergenic | 30.0% | |
| AATCTGCAAAATTAGCATCA+GGG | - | chr1_4:68279275-68279294 | None:intergenic | 30.0% | |
| GCAATGTTTGAACAAGATAA+TGG | + | chr1_4:68279306-68279325 | Msa0180430:CDS | 30.0% | |
| ! | GTCACAACAAAATTTGGAAT+CGG | - | chr1_4:68279360-68279379 | None:intergenic | 30.0% |
| !! | GATTCCAAATTTTGTTGTGA+CGG | + | chr1_4:68279359-68279378 | Msa0180430:CDS | 30.0% |
| TTATAGGAGGAAAGAAAGAT+AGG | + | chr1_4:68279403-68279422 | Msa0180430:CDS | 30.0% | |
| ATGGTAGTTGTTCTTCTAAA+GGG | + | chr1_4:68279688-68279707 | Msa0180430:CDS | 30.0% | |
| CTAAAGGGAGAAAATTGAAA+TGG | + | chr1_4:68279703-68279722 | Msa0180430:CDS | 30.0% | |
| GAATGCAACAAGAAGAAATT+AGG | + | chr1_4:68279817-68279836 | Msa0180430:CDS | 30.0% | |
| AAAAGAAGGGTTACTACTAT+AGG | - | chr1_4:68279976-68279995 | None:intergenic | 30.0% | |
| TAGGTATTTCACTATCCAAT+AGG | - | chr1_4:68280013-68280032 | None:intergenic | 30.0% | |
| ! | TGAAACTTGGTAATTCCTTA+GGG | - | chr1_4:68280142-68280161 | None:intergenic | 30.0% |
| ! | TTGAAACTTGGTAATTCCTT+AGG | - | chr1_4:68280143-68280162 | None:intergenic | 30.0% |
| GAAGAAGAAGATGATGAAGA+AGG | - | chr1_4:68279114-68279133 | None:intergenic | 35.0% | |
| ! | TGATGTGTTGATGTAGTGAA+AGG | - | chr1_4:68279237-68279256 | None:intergenic | 35.0% |
| CAATCTGCAAAATTAGCATC+AGG | - | chr1_4:68279276-68279295 | None:intergenic | 35.0% | |
| ! | CAAGATAATGGCTACAACTT+TGG | + | chr1_4:68279318-68279337 | Msa0180430:CDS | 35.0% |
| AGTAAGATTCACACATCACA+GGG | + | chr1_4:68279429-68279448 | Msa0180430:CDS | 35.0% | |
| GATGGTAGTTGTTCTTCTAA+AGG | + | chr1_4:68279687-68279706 | Msa0180430:CDS | 35.0% | |
| TCAGTTTCAGTACTATCAAC+AGG | - | chr1_4:68279915-68279934 | None:intergenic | 35.0% | |
| !! | TGTTGATAGTACTGAAACTG+AGG | + | chr1_4:68279914-68279933 | Msa0180430:CDS | 35.0% |
| AGTGAAATACCTAGAGATCA+TGG | + | chr1_4:68280020-68280039 | Msa0180430:CDS | 35.0% | |
| TTAAATCCACCATGATCTCT+AGG | - | chr1_4:68280032-68280051 | None:intergenic | 35.0% | |
| !! | TGGTGGATTTAATGTGATTG+AGG | + | chr1_4:68280040-68280059 | Msa0180430:CDS | 35.0% |
| ! | GGATAGTAGGAATTAGGTTT+TGG | - | chr1_4:68280121-68280140 | None:intergenic | 35.0% |
| GCATGTAGATAGATTCATAG+TGG | - | chr1_4:68280249-68280268 | None:intergenic | 35.0% | |
| GAAGAAGAAGATGATGAAGA+AGG | - | chr1_4:68279114-68279133 | None:intergenic | 35.0% | |
| ! | TGATGTGTTGATGTAGTGAA+AGG | - | chr1_4:68279237-68279256 | None:intergenic | 35.0% |
| CAATCTGCAAAATTAGCATC+AGG | - | chr1_4:68279276-68279295 | None:intergenic | 35.0% | |
| ! | CAAGATAATGGCTACAACTT+TGG | + | chr1_4:68279318-68279337 | Msa0180430:CDS | 35.0% |
| AGTAAGATTCACACATCACA+GGG | + | chr1_4:68279429-68279448 | Msa0180430:CDS | 35.0% | |
| GATGGTAGTTGTTCTTCTAA+AGG | + | chr1_4:68279687-68279706 | Msa0180430:CDS | 35.0% | |
| TCAGTTTCAGTACTATCAAC+AGG | - | chr1_4:68279915-68279934 | None:intergenic | 35.0% | |
| !! | TGTTGATAGTACTGAAACTG+AGG | + | chr1_4:68279914-68279933 | Msa0180430:CDS | 35.0% |
| AGTGAAATACCTAGAGATCA+TGG | + | chr1_4:68280020-68280039 | Msa0180430:CDS | 35.0% | |
| TTAAATCCACCATGATCTCT+AGG | - | chr1_4:68280032-68280051 | None:intergenic | 35.0% | |
| !! | TGGTGGATTTAATGTGATTG+AGG | + | chr1_4:68280040-68280059 | Msa0180430:CDS | 35.0% |
| ! | GGATAGTAGGAATTAGGTTT+TGG | - | chr1_4:68280121-68280140 | None:intergenic | 35.0% |
| GCATGTAGATAGATTCATAG+TGG | - | chr1_4:68280249-68280268 | None:intergenic | 35.0% | |
| GCAAAATTAGCATCAGGGAA+TGG | - | chr1_4:68279270-68279289 | None:intergenic | 40.0% | |
| TGCTCCGTCACAACAAAATT+TGG | - | chr1_4:68279366-68279385 | None:intergenic | 40.0% | |
| AAACAACCAGCAGCAGTTAT+AGG | + | chr1_4:68279387-68279406 | Msa0180430:CDS | 40.0% | |
| CAGTAAGATTCACACATCAC+AGG | + | chr1_4:68279428-68279447 | Msa0180430:CDS | 40.0% | |
| AACCAAGTAACACACTTGAG+TGG | + | chr1_4:68279532-68279551 | Msa0180430:CDS | 40.0% | |
| ! | AGCAACAAATCATTTTCCGG+CGG | + | chr1_4:68279654-68279673 | Msa0180430:CDS | 40.0% |
| TGTTACAAGATGTGTAGCAG+TGG | + | chr1_4:68279792-68279811 | Msa0180430:CDS | 40.0% | |
| CAAGAAGAAATTAGGTACCC+TGG | + | chr1_4:68279825-68279844 | Msa0180430:CDS | 40.0% | |
| ! | GTATTTGTTGAATCTGCACC+AGG | - | chr1_4:68279852-68279871 | None:intergenic | 40.0% |
| AAACTGAGGCTTATGCAAGA+TGG | + | chr1_4:68279928-68279947 | Msa0180430:CDS | 40.0% | |
| GAAATACCTAGAGATCATGG+TGG | + | chr1_4:68280023-68280042 | Msa0180430:CDS | 40.0% | |
| CCTTAGGGATAGTAGGAATT+AGG | - | chr1_4:68280127-68280146 | None:intergenic | 40.0% | |
| CCTAATTCCTACTATCCCTA+AGG | + | chr1_4:68280124-68280143 | Msa0180430:CDS | 40.0% | |
| GGTAATTCCTTAGGGATAGT+AGG | - | chr1_4:68280134-68280153 | None:intergenic | 40.0% | |
| TGGAGTTGAACAAGGGAATA+AGG | - | chr1_4:68280192-68280211 | None:intergenic | 40.0% | |
| TCCCTTGTTCAACTCCAAAT+TGG | + | chr1_4:68280195-68280214 | Msa0180430:CDS | 40.0% | |
| ! | CCCAATTTGGAGTTGAACAA+GGG | - | chr1_4:68280199-68280218 | None:intergenic | 40.0% |
| CCCTTGTTCAACTCCAAATT+GGG | + | chr1_4:68280196-68280215 | Msa0180430:CDS | 40.0% | |
| ! | TCCCAATTTGGAGTTGAACA+AGG | - | chr1_4:68280200-68280219 | None:intergenic | 40.0% |
| AGTGGCTATTCCACAAAAGT+TGG | - | chr1_4:68280231-68280250 | None:intergenic | 40.0% | |
| GCAAAATTAGCATCAGGGAA+TGG | - | chr1_4:68279270-68279289 | None:intergenic | 40.0% | |
| TGCTCCGTCACAACAAAATT+TGG | - | chr1_4:68279366-68279385 | None:intergenic | 40.0% | |
| AAACAACCAGCAGCAGTTAT+AGG | + | chr1_4:68279387-68279406 | Msa0180430:CDS | 40.0% | |
| CAGTAAGATTCACACATCAC+AGG | + | chr1_4:68279428-68279447 | Msa0180430:CDS | 40.0% | |
| AACCAAGTAACACACTTGAG+TGG | + | chr1_4:68279532-68279551 | Msa0180430:CDS | 40.0% | |
| ! | AGCAACAAATCATTTTCCGG+CGG | + | chr1_4:68279654-68279673 | Msa0180430:CDS | 40.0% |
| TGTTACAAGATGTGTAGCAG+TGG | + | chr1_4:68279792-68279811 | Msa0180430:CDS | 40.0% | |
| CAAGAAGAAATTAGGTACCC+TGG | + | chr1_4:68279825-68279844 | Msa0180430:CDS | 40.0% | |
| ! | GTATTTGTTGAATCTGCACC+AGG | - | chr1_4:68279852-68279871 | None:intergenic | 40.0% |
| AAACTGAGGCTTATGCAAGA+TGG | + | chr1_4:68279928-68279947 | Msa0180430:CDS | 40.0% | |
| GAAATACCTAGAGATCATGG+TGG | + | chr1_4:68280023-68280042 | Msa0180430:CDS | 40.0% | |
| CCTTAGGGATAGTAGGAATT+AGG | - | chr1_4:68280127-68280146 | None:intergenic | 40.0% | |
| CCTAATTCCTACTATCCCTA+AGG | + | chr1_4:68280124-68280143 | Msa0180430:CDS | 40.0% | |
| GGTAATTCCTTAGGGATAGT+AGG | - | chr1_4:68280134-68280153 | None:intergenic | 40.0% | |
| TGGAGTTGAACAAGGGAATA+AGG | - | chr1_4:68280192-68280211 | None:intergenic | 40.0% | |
| TCCCTTGTTCAACTCCAAAT+TGG | + | chr1_4:68280195-68280214 | Msa0180430:CDS | 40.0% | |
| ! | CCCAATTTGGAGTTGAACAA+GGG | - | chr1_4:68280199-68280218 | None:intergenic | 40.0% |
| CCCTTGTTCAACTCCAAATT+GGG | + | chr1_4:68280196-68280215 | Msa0180430:CDS | 40.0% | |
| ! | TCCCAATTTGGAGTTGAACA+AGG | - | chr1_4:68280200-68280219 | None:intergenic | 40.0% |
| AGTGGCTATTCCACAAAAGT+TGG | - | chr1_4:68280231-68280250 | None:intergenic | 40.0% | |
| TTTCCTCCTATAACTGCTGC+TGG | - | chr1_4:68279396-68279415 | None:intergenic | 45.0% | |
| ACAGGGTTTGAGAGACAGAA+GGG | + | chr1_4:68279446-68279465 | Msa0180430:CDS | 45.0% | |
| ! | AGCCACTCAAGTGTGTTACT+TGG | - | chr1_4:68279537-68279556 | None:intergenic | 45.0% |
| ! | AACAAATCATTTTCCGGCGG+TGG | + | chr1_4:68279657-68279676 | Msa0180430:CDS | 45.0% |
| CAAGAGCAAGAGCTAGAGAA+AGG | + | chr1_4:68279766-68279785 | Msa0180430:CDS | 45.0% | |
| ! | TTGGAGCTAGTCTCCCAATT+TGG | - | chr1_4:68280212-68280231 | None:intergenic | 45.0% |
| !! | GAGACTAGCTCCAACTTTTG+TGG | + | chr1_4:68280218-68280237 | Msa0180430:CDS | 45.0% |
| CTACATGCTTCTTGAATCCG+TGG | + | chr1_4:68280261-68280280 | Msa0180430:CDS | 45.0% | |
| TTTCCTCCTATAACTGCTGC+TGG | - | chr1_4:68279396-68279415 | None:intergenic | 45.0% | |
| ACAGGGTTTGAGAGACAGAA+GGG | + | chr1_4:68279446-68279465 | Msa0180430:CDS | 45.0% | |
| ! | AGCCACTCAAGTGTGTTACT+TGG | - | chr1_4:68279537-68279556 | None:intergenic | 45.0% |
| ! | AACAAATCATTTTCCGGCGG+TGG | + | chr1_4:68279657-68279676 | Msa0180430:CDS | 45.0% |
| CAAGAGCAAGAGCTAGAGAA+AGG | + | chr1_4:68279766-68279785 | Msa0180430:CDS | 45.0% | |
| ! | TTGGAGCTAGTCTCCCAATT+TGG | - | chr1_4:68280212-68280231 | None:intergenic | 45.0% |
| !! | GAGACTAGCTCCAACTTTTG+TGG | + | chr1_4:68280218-68280237 | Msa0180430:CDS | 45.0% |
| CTACATGCTTCTTGAATCCG+TGG | + | chr1_4:68280261-68280280 | Msa0180430:CDS | 45.0% | |
| CAACCAGCAGCAGTTATAGG+AGG | + | chr1_4:68279390-68279409 | Msa0180430:CDS | 50.0% | |
| CACAGGGTTTGAGAGACAGA+AGG | + | chr1_4:68279445-68279464 | Msa0180430:CDS | 50.0% | |
| ! | AAATCATTTTCCGGCGGTGG+TGG | + | chr1_4:68279660-68279679 | Msa0180430:CDS | 50.0% |
| GAAATTAGGTACCCTGGACC+TGG | + | chr1_4:68279831-68279850 | Msa0180430:CDS | 50.0% | |
| TTGAATCTGCACCAGGTCCA+GGG | - | chr1_4:68279845-68279864 | None:intergenic | 50.0% | |
| CAACCAGCAGCAGTTATAGG+AGG | + | chr1_4:68279390-68279409 | Msa0180430:CDS | 50.0% | |
| CACAGGGTTTGAGAGACAGA+AGG | + | chr1_4:68279445-68279464 | Msa0180430:CDS | 50.0% | |
| ! | AAATCATTTTCCGGCGGTGG+TGG | + | chr1_4:68279660-68279679 | Msa0180430:CDS | 50.0% |
| GAAATTAGGTACCCTGGACC+TGG | + | chr1_4:68279831-68279850 | Msa0180430:CDS | 50.0% | |
| TTGAATCTGCACCAGGTCCA+GGG | - | chr1_4:68279845-68279864 | None:intergenic | 50.0% | |
| GTTGAATCTGCACCAGGTCC+AGG | - | chr1_4:68279846-68279865 | None:intergenic | 55.0% | |
| GTTGAATCTGCACCAGGTCC+AGG | - | chr1_4:68279846-68279865 | None:intergenic | 55.0% | |
| !! | TCATTTTCCGGCGGTGGTGG+CGG | + | chr1_4:68279663-68279682 | Msa0180430:CDS | 60.0% |
| !! | TCATTTTCCGGCGGTGGTGG+CGG | + | chr1_4:68279663-68279682 | Msa0180430:CDS | 60.0% |
| ACCATCGCCGCCACCACCGC+CGG | - | chr1_4:68279673-68279692 | None:intergenic | 75.0% | |
| ACCATCGCCGCCACCACCGC+CGG | - | chr1_4:68279673-68279692 | None:intergenic | 75.0% | |
| !!! | TCCGGCGGTGGTGGCGGCGA+TGG | + | chr1_4:68279669-68279688 | Msa0180430:CDS | 80.0% |
| !!! | TCCGGCGGTGGTGGCGGCGA+TGG | + | chr1_4:68279669-68279688 | Msa0180430:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 68279087 | 68280286 | 68279087 | ID=Msa0180430;Name=Msa0180430 |
| chr1_4 | mRNA | 68279087 | 68280286 | 68279087 | ID=Msa0180430-mRNA-1;Parent=Msa0180430;Name=Msa0180430-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|399 |
| chr1_4 | exon | 68279087 | 68280286 | 68279087 | ID=Msa0180430-mRNA-1:exon:22539;Parent=Msa0180430-mRNA-1 |
| chr1_4 | CDS | 68279087 | 68280286 | 68279087 | ID=Msa0180430-mRNA-1:cds;Parent=Msa0180430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
