AlfalfaGEDB | Msa0180430

M. sativa cultivar zhongmu-4 / Msa0180430

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0180430	KEH43846.1	97.506	401	4	4	1	399	93	489	0.0	798

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0180430	sp\|Q9FYG7\|TCP1_ARATH	42.690	171	67	5	110	253	87	253	8.37e-26	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0180430	A0A072VQD1	97.506	401	4	4	1	399	93	489	0.0	798

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TFs/TRs:

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Gene ID	Type	Classification
Msa0180430	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0180430	MtrunA17_Chr1g0205131	97.506	401	4	4	1	399	1	397	0.0	797
Msa0180430	MtrunA17_Chr6g0456881	40.173	346	109	15	84	393	108	391	9.61e-48	168
Msa0180430	MtrunA17_Chr7g0220931	36.438	365	154	12	41	393	57	355	4.66e-39	143
Msa0180430	MtrunA17_Chr4g0062691	40.625	160	66	4	96	238	120	267	1.16e-20	92.8
Msa0180430	MtrunA17_Chr8g0376571	35.404	161	69	3	109	236	60	218	1.91e-17	84.0
Msa0180430	MtrunA17_Chr4g0040921	55.738	61	27	0	109	169	21	81	4.11e-17	81.6
Msa0180430	MtrunA17_Chr8g0360441	55.738	61	27	0	109	169	53	113	1.12e-16	81.3
Msa0180430	MtrunA17_Chr2g0316391	57.377	61	26	0	109	169	19	79	1.65e-16	79.3
Msa0180430	MtrunA17_Chr2g0325171	53.333	60	28	0	109	168	23	82	1.75e-16	79.7
Msa0180430	MtrunA17_Chr4g0061561	37.037	108	67	1	109	216	56	162	1.88e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0180430	AT1G67260.2	42.690	171	67	5	110	253	87	253	6.30e-27	110
Msa0180430	AT1G67260.3	42.690	171	67	5	110	253	87	253	6.30e-27	110
Msa0180430	AT1G67260.1	42.690	171	67	5	110	253	87	253	8.51e-27	110
Msa0180430	AT1G68800.2	68.182	66	21	0	110	175	112	177	3.02e-21	94.7
Msa0180430	AT1G68800.1	68.182	66	21	0	110	175	112	177	3.36e-21	94.4
Msa0180430	AT3G18550.2	30.043	233	104	8	61	235	66	297	1.26e-18	87.8
Msa0180430	AT3G18550.3	31.034	232	101	8	61	234	66	296	2.41e-18	86.7
Msa0180430	AT4G18390.1	39.850	133	68	2	109	236	41	166	2.81e-18	85.9
Msa0180430	AT4G18390.2	39.850	133	68	2	109	236	41	166	2.81e-18	85.9
Msa0180430	AT3G18550.1	29.958	237	103	9	61	235	66	301	3.20e-18	86.7

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Find 72 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGGTTACTACTAT+AGG	0.421997	1_4:-68279973	None:intergenic
AAACAACCAGCAGCAGTTAT+AGG	0.340022	1_4:+68279387	Msa0180430:CDS
AAACTGAGGCTTATGCAAGA+TGG	0.603501	1_4:+68279928	Msa0180430:CDS
AACCAAGTAACACACTTGAG+TGG	0.665918	1_4:+68279532	Msa0180430:CDS
AAGAAGAAGATGATGAAGAA+GGG	0.472483	1_4:-68279110	None:intergenic
AAGAAGAGTAGTATTGTTAT+TGG	0.300314	1_4:-68279190	None:intergenic
AATCATTATTATTAATATTG+TGG	0.455465	1_4:-68280163	None:intergenic
AATCTGCAAAATTAGCATCA+GGG	0.626917	1_4:-68279272	None:intergenic
ACAGGGTTTGAGAGACAGAA+GGG	0.629239	1_4:+68279446	Msa0180430:CDS
ACCATCGCCGCCACCACCGC+CGG	0.517778	1_4:-68279670	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAGAAGGGAAATTATT+AGG	-	chr1_4:68279102-68279121	None:intergenic	30.0%
AAGAAGAAGATGATGAAGAA+GGG	-	chr1_4:68279113-68279132	None:intergenic	30.0%
GATTGTCAATGAGAAAAGAA+AGG	-	chr1_4:68279152-68279171	None:intergenic	30.0%
AATCTGCAAAATTAGCATCA+GGG	-	chr1_4:68279275-68279294	None:intergenic	30.0%
GCAATGTTTGAACAAGATAA+TGG	+	chr1_4:68279306-68279325	Msa0180430:CDS	30.0%
TTATAGGAGGAAAGAAAGAT+AGG	+	chr1_4:68279403-68279422	Msa0180430:CDS	30.0%
ATGGTAGTTGTTCTTCTAAA+GGG	+	chr1_4:68279688-68279707	Msa0180430:CDS	30.0%
CTAAAGGGAGAAAATTGAAA+TGG	+	chr1_4:68279703-68279722	Msa0180430:CDS	30.0%
GAATGCAACAAGAAGAAATT+AGG	+	chr1_4:68279817-68279836	Msa0180430:CDS	30.0%
AAAAGAAGGGTTACTACTAT+AGG	-	chr1_4:68279976-68279995	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	68279087	68280286	68279087	ID=Msa0180430;Name=Msa0180430
chr1_4	mRNA	68279087	68280286	68279087	ID=Msa0180430-mRNA-1;Parent=Msa0180430;Name=Msa0180430-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|399
chr1_4	exon	68279087	68280286	68279087	ID=Msa0180430-mRNA-1:exon:22539;Parent=Msa0180430-mRNA-1
chr1_4	CDS	68279087	68280286	68279087	ID=Msa0180430-mRNA-1:cds;Parent=Msa0180430-mRNA-1

Gene Sequence

>Msa0180430

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTTTGTTGTGACGGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGCGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAAAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA

Protein sequence

>Msa0180430

MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNFVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIKRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW*