Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0180470 | sp|Q2MHE4|HT1_ARATH | 30.464 | 302 | 133 | 6 | 63 | 307 | 70 | 351 | 2.30e-36 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0180470 | A0A072VQZ6 | 79.058 | 382 | 23 | 3 | 1 | 325 | 1 | 382 | 0.0 | 594 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0180470 | MtrunA17_Chr1g0205071 | 79.058 | 382 | 23 | 3 | 1 | 325 | 1 | 382 | 0.0 | 594 |
Msa0180470 | MtrunA17_Chr5g0394681 | 60.938 | 384 | 79 | 6 | 10 | 325 | 10 | 390 | 3.71e-153 | 434 |
Msa0180470 | MtrunA17_Chr4g0059181 | 46.923 | 390 | 111 | 6 | 31 | 325 | 4 | 392 | 5.78e-119 | 348 |
Msa0180470 | MtrunA17_Chr6g0450871 | 48.634 | 366 | 110 | 5 | 37 | 325 | 11 | 375 | 2.78e-116 | 340 |
Msa0180470 | MtrunA17_Chr3g0117811 | 48.895 | 362 | 115 | 6 | 33 | 325 | 3 | 363 | 7.32e-116 | 339 |
Msa0180470 | MtrunA17_Chr2g0322631 | 72.973 | 111 | 27 | 1 | 104 | 211 | 1 | 111 | 1.73e-46 | 153 |
Msa0180470 | MtrunA17_Chr8g0388891 | 31.061 | 264 | 127 | 7 | 69 | 297 | 124 | 367 | 6.87e-37 | 136 |
Msa0180470 | MtrunA17_Chr4g0047201 | 29.630 | 297 | 135 | 5 | 62 | 302 | 184 | 462 | 7.45e-37 | 138 |
Msa0180470 | MtrunA17_Chr4g0075541 | 29.934 | 304 | 132 | 7 | 63 | 307 | 71 | 352 | 1.41e-36 | 135 |
Msa0180470 | MtrunA17_Chr3g0090261 | 32.090 | 268 | 140 | 5 | 69 | 297 | 73 | 337 | 2.85e-36 | 134 |
Msa0180470 | MtrunA17_Chr2g0282321 | 28.197 | 305 | 144 | 6 | 69 | 316 | 152 | 438 | 1.75e-35 | 134 |
Msa0180470 | MtrunA17_Chr4g0047211 | 28.296 | 311 | 146 | 7 | 61 | 314 | 24 | 314 | 5.28e-33 | 125 |
Msa0180470 | MtrunA17_Chr4g0047191 | 28.296 | 311 | 146 | 7 | 61 | 314 | 29 | 319 | 5.84e-33 | 125 |
Msa0180470 | MtrunA17_Chr4g0059121 | 26.688 | 311 | 146 | 6 | 68 | 322 | 48 | 332 | 9.22e-33 | 124 |
Msa0180470 | MtrunA17_Chr3g0117731 | 27.273 | 286 | 132 | 5 | 68 | 297 | 47 | 312 | 5.79e-32 | 122 |
Msa0180470 | MtrunA17_Chr5g0406251 | 30.712 | 267 | 140 | 8 | 71 | 299 | 288 | 547 | 1.80e-31 | 124 |
Msa0180470 | MtrunA17_Chr3g0143531 | 29.134 | 254 | 135 | 7 | 84 | 299 | 31 | 277 | 5.19e-27 | 107 |
Msa0180470 | MtrunA17_Chr1g0202101 | 28.044 | 271 | 149 | 7 | 60 | 292 | 265 | 527 | 3.90e-26 | 108 |
Msa0180470 | MtrunA17_Chr1g0211611 | 26.103 | 272 | 156 | 7 | 71 | 304 | 294 | 558 | 3.70e-25 | 105 |
Msa0180470 | MtrunA17_Chr4g0068411 | 26.449 | 276 | 121 | 5 | 70 | 287 | 452 | 703 | 8.85e-20 | 90.1 |
Msa0180470 | MtrunA17_Chr5g0427651 | 41.837 | 98 | 52 | 1 | 214 | 306 | 818 | 915 | 1.72e-17 | 83.6 |
Msa0180470 | MtrunA17_Chr2g0294351 | 25.912 | 274 | 149 | 6 | 70 | 299 | 458 | 721 | 3.42e-17 | 82.4 |
Msa0180470 | MtrunA17_Chr2g0305141 | 24.542 | 273 | 159 | 6 | 73 | 299 | 1078 | 1349 | 2.11e-16 | 80.5 |
Msa0180470 | MtrunA17_Chr6g0449241 | 33.099 | 142 | 73 | 3 | 70 | 211 | 18 | 137 | 4.76e-16 | 77.8 |
Msa0180470 | MtrunA17_Chr6g0449241 | 38.462 | 78 | 47 | 1 | 219 | 296 | 210 | 286 | 1.39e-11 | 64.7 |
Msa0180470 | MtrunA17_Chr5g0403721 | 28.400 | 250 | 124 | 11 | 97 | 299 | 4 | 245 | 1.37e-15 | 76.6 |
Msa0180470 | MtrunA17_Chr4g0072741 | 24.845 | 322 | 183 | 10 | 37 | 302 | 786 | 1104 | 1.48e-15 | 77.8 |
Msa0180470 | MtrunA17_Chr4g0041201 | 21.698 | 318 | 160 | 10 | 46 | 302 | 512 | 801 | 2.52e-15 | 77.0 |
Msa0180470 | MtrunA17_Chr4g0065211 | 21.951 | 287 | 145 | 7 | 78 | 302 | 1121 | 1390 | 3.30e-15 | 76.6 |
Msa0180470 | MtrunA17_Chr2g0310761 | 24.354 | 271 | 150 | 8 | 76 | 296 | 937 | 1202 | 1.44e-14 | 74.7 |
Msa0180470 | MtrunA17_Chr7g0244621 | 38.554 | 83 | 51 | 0 | 217 | 299 | 227 | 309 | 2.43e-14 | 73.2 |
Msa0180470 | MtrunA17_Chr7g0244621 | 32.867 | 143 | 74 | 3 | 69 | 211 | 36 | 156 | 3.69e-13 | 69.3 |
Msa0180470 | MtrunA17_Chr8g0357611 | 24.535 | 269 | 148 | 8 | 78 | 296 | 1370 | 1633 | 2.55e-14 | 73.9 |
Msa0180470 | MtrunA17_Chr3g0105891 | 20.906 | 287 | 141 | 7 | 69 | 296 | 321 | 580 | 5.62e-14 | 72.8 |
Msa0180470 | MtrunA17_Chr3g0116981 | 30.986 | 142 | 76 | 3 | 70 | 211 | 18 | 137 | 7.93e-14 | 71.2 |
Msa0180470 | MtrunA17_Chr1g0171451 | 36.782 | 87 | 55 | 0 | 213 | 299 | 585 | 671 | 8.17e-14 | 72.0 |
Msa0180470 | MtrunA17_Chr1g0196631 | 23.188 | 276 | 135 | 7 | 73 | 287 | 895 | 1154 | 1.22e-13 | 72.0 |
Msa0180470 | MtrunA17_Chr1g0179331 | 37.931 | 87 | 54 | 0 | 213 | 299 | 726 | 812 | 3.23e-13 | 70.5 |
Msa0180470 | MtrunA17_Chr2g0310781 | 35.000 | 80 | 52 | 0 | 223 | 302 | 1035 | 1114 | 8.42e-13 | 69.3 |
Msa0180470 | MtrunA17_Chr3g0132791 | 36.047 | 86 | 55 | 0 | 214 | 299 | 825 | 910 | 9.09e-13 | 69.3 |
Msa0180470 | MtrunA17_Chr1g0151541 | 33.333 | 87 | 58 | 0 | 213 | 299 | 832 | 918 | 2.83e-12 | 67.8 |
Msa0180470 | MtrunA17_Chr5g0431191 | 36.986 | 73 | 46 | 0 | 224 | 296 | 511 | 583 | 5.86e-12 | 66.6 |
Msa0180470 | MtrunA17_Chr1g0191171 | 33.333 | 87 | 58 | 0 | 213 | 299 | 858 | 944 | 1.10e-11 | 65.9 |
Msa0180470 | MtrunA17_Chr6g0482711 | 28.125 | 96 | 69 | 0 | 213 | 308 | 829 | 924 | 4.98e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0180470 | AT3G22750.1 | 59.944 | 357 | 85 | 4 | 27 | 325 | 22 | 378 | 2.26e-150 | 427 |
Msa0180470 | AT3G63260.1 | 50.133 | 375 | 121 | 8 | 17 | 325 | 17 | 391 | 1.07e-117 | 345 |
Msa0180470 | AT3G01490.1 | 45.980 | 398 | 105 | 5 | 37 | 325 | 15 | 411 | 5.05e-116 | 341 |
Msa0180470 | AT5G50000.1 | 46.615 | 384 | 112 | 6 | 32 | 325 | 5 | 385 | 1.48e-115 | 339 |
Msa0180470 | AT4G14780.1 | 63.978 | 186 | 65 | 2 | 27 | 211 | 9 | 193 | 5.34e-78 | 243 |
Msa0180470 | AT4G14780.1 | 77.876 | 113 | 25 | 0 | 213 | 325 | 252 | 364 | 2.04e-62 | 202 |
Msa0180470 | AT3G63260.2 | 45.928 | 307 | 100 | 8 | 17 | 257 | 17 | 323 | 1.06e-77 | 241 |
Msa0180470 | AT5G50000.2 | 41.401 | 314 | 91 | 6 | 32 | 255 | 5 | 315 | 1.05e-73 | 231 |
Msa0180470 | AT3G01490.2 | 38.988 | 336 | 95 | 5 | 37 | 263 | 15 | 349 | 3.69e-72 | 228 |
Msa0180470 | AT1G62400.1 | 30.464 | 302 | 133 | 6 | 63 | 307 | 70 | 351 | 2.34e-37 | 137 |
Msa0180470 | AT4G31170.7 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.6 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.5 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.1 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.2 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.3 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT4G31170.8 | 28.720 | 289 | 130 | 6 | 69 | 301 | 122 | 390 | 1.62e-36 | 136 |
Msa0180470 | AT2G24360.1 | 27.164 | 335 | 165 | 8 | 24 | 301 | 77 | 389 | 5.03e-34 | 129 |
Msa0180470 | AT5G58950.1 | 27.425 | 299 | 143 | 5 | 60 | 302 | 189 | 469 | 4.61e-33 | 128 |
Msa0180470 | AT2G17700.1 | 28.625 | 269 | 147 | 6 | 69 | 299 | 277 | 538 | 1.29e-32 | 127 |
Msa0180470 | AT4G35780.1 | 29.371 | 286 | 123 | 8 | 69 | 299 | 283 | 544 | 6.49e-31 | 122 |
Msa0180470 | AT3G46930.1 | 28.179 | 291 | 131 | 5 | 69 | 302 | 157 | 426 | 4.04e-30 | 119 |
Msa0180470 | AT3G46930.2 | 28.179 | 291 | 131 | 5 | 69 | 302 | 192 | 461 | 4.85e-30 | 119 |
Msa0180470 | AT4G38470.1 | 29.588 | 267 | 143 | 7 | 71 | 299 | 283 | 542 | 4.47e-29 | 117 |
Msa0180470 | AT4G38470.2 | 29.588 | 267 | 143 | 7 | 71 | 299 | 283 | 542 | 4.90e-29 | 117 |
Msa0180470 | AT4G31170.9 | 30.481 | 187 | 95 | 5 | 69 | 240 | 122 | 288 | 1.03e-22 | 96.7 |
Msa0180470 | AT4G31170.10 | 30.481 | 187 | 95 | 5 | 69 | 240 | 122 | 288 | 1.03e-22 | 96.7 |
Msa0180470 | AT4G31170.4 | 30.481 | 187 | 95 | 5 | 69 | 240 | 122 | 288 | 1.03e-22 | 96.7 |
Msa0180470 | AT1G67890.1 | 25.962 | 312 | 136 | 7 | 70 | 323 | 479 | 753 | 8.58e-22 | 96.7 |
Msa0180470 | AT1G67890.3 | 26.296 | 270 | 116 | 6 | 70 | 281 | 479 | 723 | 3.38e-18 | 85.9 |
Msa0180470 | AT1G67890.2 | 26.296 | 270 | 116 | 6 | 70 | 281 | 479 | 723 | 3.38e-18 | 85.9 |
Msa0180470 | AT5G50180.1 | 33.113 | 151 | 79 | 3 | 61 | 211 | 3 | 131 | 2.53e-17 | 82.0 |
Msa0180470 | AT5G50180.1 | 38.462 | 78 | 47 | 1 | 219 | 296 | 204 | 280 | 3.15e-13 | 70.1 |
Msa0180470 | AT4G23050.2 | 24.382 | 283 | 162 | 7 | 72 | 311 | 462 | 735 | 6.73e-17 | 82.0 |
Msa0180470 | AT4G23050.1 | 24.382 | 283 | 162 | 7 | 72 | 311 | 461 | 734 | 7.05e-17 | 82.0 |
Msa0180470 | AT1G04700.1 | 23.611 | 288 | 143 | 8 | 73 | 299 | 761 | 1032 | 2.30e-15 | 77.4 |
Msa0180470 | AT1G04700.2 | 23.611 | 288 | 143 | 8 | 73 | 299 | 761 | 1032 | 2.30e-15 | 77.4 |
Msa0180470 | AT3G46930.4 | 26.250 | 240 | 100 | 6 | 69 | 252 | 192 | 410 | 1.17e-14 | 74.7 |
Msa0180470 | AT3G46930.6 | 26.250 | 240 | 100 | 6 | 69 | 252 | 96 | 314 | 1.24e-14 | 73.9 |
Msa0180470 | AT3G46930.3 | 26.250 | 240 | 100 | 6 | 69 | 252 | 192 | 410 | 1.27e-14 | 74.7 |
Msa0180470 | AT3G46930.5 | 26.250 | 240 | 100 | 6 | 69 | 252 | 157 | 375 | 1.86e-14 | 73.9 |
Msa0180470 | AT3G46920.1 | 23.529 | 272 | 161 | 6 | 76 | 301 | 804 | 1074 | 1.95e-14 | 74.7 |
Msa0180470 | AT4G38470.3 | 30.496 | 141 | 73 | 3 | 71 | 211 | 283 | 398 | 2.18e-14 | 74.3 |
Msa0180470 | AT3G46920.2 | 23.529 | 272 | 161 | 6 | 76 | 301 | 870 | 1140 | 2.21e-14 | 74.7 |
Msa0180470 | AT3G27560.1 | 30.282 | 142 | 77 | 3 | 70 | 211 | 18 | 137 | 3.14e-14 | 73.2 |
Msa0180470 | AT3G27560.1 | 35.556 | 90 | 57 | 1 | 219 | 308 | 210 | 298 | 3.71e-12 | 67.0 |
Msa0180470 | AT5G58520.1 | 24.590 | 183 | 79 | 4 | 173 | 296 | 416 | 598 | 3.97e-14 | 73.6 |
Msa0180470 | AT1G16270.1 | 25.091 | 275 | 151 | 9 | 78 | 302 | 863 | 1132 | 3.99e-14 | 73.9 |
Msa0180470 | AT1G16270.2 | 25.091 | 275 | 151 | 9 | 78 | 302 | 863 | 1132 | 3.99e-14 | 73.9 |
Msa0180470 | AT1G16270.3 | 25.091 | 275 | 151 | 9 | 78 | 302 | 863 | 1132 | 3.99e-14 | 73.9 |
Msa0180470 | AT5G01850.1 | 37.349 | 83 | 52 | 0 | 217 | 299 | 200 | 282 | 5.58e-14 | 72.0 |
Msa0180470 | AT5G40540.1 | 29.577 | 142 | 78 | 3 | 70 | 211 | 18 | 137 | 6.34e-14 | 72.0 |
Msa0180470 | AT5G40540.1 | 38.462 | 78 | 47 | 1 | 219 | 296 | 210 | 286 | 1.68e-11 | 64.7 |
Msa0180470 | AT5G01850.2 | 37.349 | 83 | 52 | 0 | 217 | 299 | 224 | 306 | 6.55e-14 | 72.0 |
Msa0180470 | AT3G06640.1 | 34.507 | 142 | 68 | 4 | 70 | 211 | 438 | 554 | 1.08e-13 | 72.4 |
Msa0180470 | AT3G06640.2 | 34.507 | 142 | 68 | 4 | 70 | 211 | 438 | 554 | 1.11e-13 | 72.4 |
Msa0180470 | AT3G06640.3 | 34.507 | 142 | 68 | 4 | 70 | 211 | 438 | 554 | 1.11e-13 | 72.4 |
Msa0180470 | AT4G24480.2 | 39.535 | 86 | 52 | 0 | 214 | 299 | 841 | 926 | 1.59e-13 | 72.0 |
Msa0180470 | AT4G24480.1 | 39.535 | 86 | 52 | 0 | 214 | 299 | 846 | 931 | 1.68e-13 | 72.0 |
Msa0180470 | AT4G24480.3 | 39.535 | 86 | 52 | 0 | 214 | 299 | 841 | 926 | 1.74e-13 | 71.6 |
Msa0180470 | AT5G57610.1 | 23.970 | 267 | 149 | 9 | 79 | 296 | 783 | 1044 | 1.98e-13 | 71.6 |
Msa0180470 | AT5G40540.4 | 29.577 | 142 | 78 | 3 | 70 | 211 | 18 | 137 | 2.72e-13 | 69.7 |
Msa0180470 | AT3G06620.1 | 35.211 | 142 | 67 | 3 | 70 | 211 | 486 | 602 | 5.31e-13 | 70.1 |
Msa0180470 | AT5G03730.2 | 39.080 | 87 | 53 | 0 | 213 | 299 | 722 | 808 | 6.88e-13 | 70.1 |
Msa0180470 | AT5G03730.1 | 39.080 | 87 | 53 | 0 | 213 | 299 | 722 | 808 | 6.88e-13 | 70.1 |
Msa0180470 | AT3G50730.1 | 31.538 | 130 | 65 | 4 | 83 | 211 | 41 | 147 | 1.14e-12 | 68.6 |
Msa0180470 | AT5G11850.1 | 34.483 | 87 | 57 | 0 | 213 | 299 | 778 | 864 | 1.25e-12 | 69.3 |
Msa0180470 | AT5G49470.4 | 33.099 | 142 | 70 | 3 | 70 | 211 | 457 | 573 | 1.30e-12 | 68.9 |
Msa0180470 | AT5G49470.7 | 33.099 | 142 | 70 | 3 | 70 | 211 | 356 | 472 | 1.74e-12 | 68.6 |
Msa0180470 | AT5G49470.1 | 33.099 | 142 | 70 | 3 | 70 | 211 | 196 | 312 | 1.75e-12 | 68.2 |
Msa0180470 | AT5G49470.3 | 33.099 | 142 | 70 | 3 | 70 | 211 | 483 | 599 | 1.95e-12 | 68.6 |
Msa0180470 | AT1G08720.1 | 32.955 | 88 | 59 | 0 | 213 | 300 | 838 | 925 | 2.72e-12 | 68.2 |
Msa0180470 | AT1G79570.2 | 36.486 | 74 | 47 | 0 | 223 | 296 | 1154 | 1227 | 4.80e-12 | 67.4 |
Msa0180470 | AT1G79570.1 | 36.486 | 74 | 47 | 0 | 223 | 296 | 1154 | 1227 | 4.80e-12 | 67.4 |
Msa0180470 | AT1G18160.1 | 28.736 | 87 | 62 | 0 | 213 | 299 | 884 | 970 | 5.03e-12 | 67.4 |
Msa0180470 | AT1G67890.4 | 32.394 | 142 | 71 | 3 | 70 | 211 | 351 | 467 | 8.38e-12 | 66.6 |
Msa0180470 | AT5G40540.3 | 38.462 | 78 | 47 | 1 | 219 | 296 | 113 | 189 | 1.35e-11 | 64.3 |
Msa0180470 | AT5G40540.2 | 38.462 | 78 | 47 | 1 | 219 | 296 | 134 | 210 | 1.96e-11 | 63.9 |
Msa0180470 | AT3G06630.1 | 33.099 | 142 | 70 | 3 | 70 | 211 | 426 | 542 | 2.00e-11 | 65.5 |
Msa0180470 | AT3G06630.2 | 33.099 | 142 | 70 | 3 | 70 | 211 | 426 | 542 | 2.03e-11 | 65.5 |
Msa0180470 | AT2G35050.1 | 32.500 | 80 | 54 | 0 | 223 | 302 | 1163 | 1242 | 4.09e-11 | 64.7 |
Msa0180470 | AT2G35050.2 | 32.500 | 80 | 54 | 0 | 223 | 302 | 1163 | 1242 | 4.09e-11 | 64.7 |
Find 89 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACCTTCCGACCCCGTCTT+AGG | 0.145125 | 1_4:+68350600 | None:intergenic |
GGAGATTGATTTGGCTAAAT+TGG | 0.147815 | 1_4:-68350418 | Msa0180470:CDS |
TCATTCCTCCAACAGTTTAT+TGG | 0.190059 | 1_4:-68349409 | Msa0180470:intron |
TCCACCACATGTTTCATTTC+CGG | 0.233439 | 1_4:+68348031 | None:intergenic |
CACCTTCCGACCCCGTCTTA+GGG | 0.343322 | 1_4:+68350601 | None:intergenic |
GGTTGTGATTCAGTTGGCTT+TGG | 0.351702 | 1_4:-68349230 | Msa0180470:CDS |
AACTATGTGCAGGTTATAAA+TGG | 0.362419 | 1_4:-68348786 | Msa0180470:intron |
GTTATTGTTGAGTTTGTTCA+TGG | 0.370741 | 1_4:-68349307 | Msa0180470:CDS |
GGGCTTATGGCACTGTCTAC+AGG | 0.371089 | 1_4:-68350371 | Msa0180470:CDS |
AGAAGAGTGGGAGATTGATT+TGG | 0.373251 | 1_4:-68350427 | Msa0180470:CDS |
GCAAAGCTTAGATTCATATA+AGG | 0.383360 | 1_4:+68348690 | None:intergenic |
CAGTTTATTGGAGCTTCAAT+GGG | 0.388478 | 1_4:-68349397 | Msa0180470:CDS |
ATACGATATGTTGTTGCAAA+TGG | 0.390573 | 1_4:-68350393 | Msa0180470:CDS |
CTGCTTTACGAGCATCATTT+CGG | 0.390766 | 1_4:-68349630 | Msa0180470:CDS |
TCAATCTCCCACTCTTCTTT+AGG | 0.396951 | 1_4:+68350432 | None:intergenic |
ATCTAGAAAGGCACATGAGC+AGG | 0.400826 | 1_4:-68350485 | Msa0180470:CDS |
CAATCAAGATCTGGGGATCT+TGG | 0.403170 | 1_4:-68350627 | Msa0180470:CDS |
TACGATATGTTGTTGCAAAT+GGG | 0.406114 | 1_4:-68350392 | Msa0180470:CDS |
ACAGTTTATTGGAGCTTCAA+TGG | 0.407643 | 1_4:-68349398 | Msa0180470:intron |
TTCTAGTGAAAGTGTTGGAC+TGG | 0.414989 | 1_4:-68349687 | Msa0180470:intron |
TTCTGCTGCTGTTGCTGATA+AGG | 0.416205 | 1_4:-68348661 | Msa0180470:intron |
TTTAGGATGCAATCAAGATC+TGG | 0.417713 | 1_4:-68350636 | None:intergenic |
AGCTGTGATGTCTACAGCTT+TGG | 0.423973 | 1_4:-68348747 | Msa0180470:CDS |
CTAGAAGTATTGAGGCTAGT+AGG | 0.433757 | 1_4:-68350455 | Msa0180470:CDS |
ACAGCTTTGGCATCTGCTTG+TGG | 0.441339 | 1_4:-68348734 | Msa0180470:CDS |
CAAGTATAATGAAAAGATGC+TGG | 0.447535 | 1_4:-68348075 | Msa0180470:CDS |
CAGCTTTGGCATCTGCTTGT+GGG | 0.448926 | 1_4:-68348733 | Msa0180470:CDS |
CTTAAGATTCCTTCAGATGC+TGG | 0.449527 | 1_4:-68349364 | Msa0180470:CDS |
AACAATAACGCAGCACGCCT+TGG | 0.450019 | 1_4:+68349321 | None:intergenic |
GAAACATGTGGTGGAAATGT+TGG | 0.452118 | 1_4:-68348023 | Msa0180470:CDS |
GGCGGTCAAAACTTGCATAC+AGG | 0.453302 | 1_4:-68349252 | Msa0180470:CDS |
TACTGCTTAGATTTCCACTA+CGG | 0.459982 | 1_4:+68350559 | None:intergenic |
AATGCACTTGGACAGCATCT+AGG | 0.461326 | 1_4:+68348100 | None:intergenic |
GTGTTGGACTGGGGTGAGGA+TGG | 0.463757 | 1_4:-68349676 | Msa0180470:CDS |
CGCAGCACGCCTTGGAAGGA+AGG | 0.469746 | 1_4:+68349329 | None:intergenic |
GTTGTTGCAAATGGGGCTTA+TGG | 0.471926 | 1_4:-68350384 | Msa0180470:CDS |
ACATCACAGCTTCTGTTGTA+AGG | 0.472772 | 1_4:+68348759 | None:intergenic |
GGACAGCATCTAGGAATCTC+TGG | 0.476391 | 1_4:+68348109 | None:intergenic |
TATGACAACCAAGATGTTGC+TGG | 0.485920 | 1_4:-68350342 | Msa0180470:intron |
ATTATACTTGCTAATGCACT+TGG | 0.491721 | 1_4:+68348088 | None:intergenic |
GGCTTATGGCACTGTCTACA+GGG | 0.500268 | 1_4:-68350370 | Msa0180470:CDS |
AGCAGCAGTTTCAGCAGCAG+TGG | 0.504885 | 1_4:+68349648 | None:intergenic |
TACACGTACCAGCAACATCT+TGG | 0.509679 | 1_4:+68350334 | None:intergenic |
GGATCTTGGTACCCCTAAGA+CGG | 0.515260 | 1_4:-68350613 | Msa0180470:CDS |
GACTATTATGGACCACGAGC+AGG | 0.515394 | 1_4:+68347929 | None:intergenic |
TTGTTGAGTTTGTTCATGGT+GGG | 0.517100 | 1_4:-68349303 | Msa0180470:CDS |
TAGAATTGATCTGAAGAACT+TGG | 0.518269 | 1_4:-68350514 | Msa0180470:CDS |
GATCTTGGTACCCCTAAGAC+GGG | 0.528556 | 1_4:-68350612 | Msa0180470:CDS |
ACTTGGATGCTGATCTAGAA+AGG | 0.529844 | 1_4:-68350497 | Msa0180470:CDS |
TTAGGATGCAATCAAGATCT+GGG | 0.535378 | 1_4:-68350635 | None:intergenic |
ACGATATGTTGTTGCAAATG+GGG | 0.537421 | 1_4:-68350391 | Msa0180470:CDS |
TTTACGAGCATCATTTCGGC+AGG | 0.539121 | 1_4:-68349626 | Msa0180470:CDS |
TCAAAATCCCCTTCCTTCCA+AGG | 0.543605 | 1_4:-68349338 | Msa0180470:CDS |
ATACAGGGTTGTGATTCAGT+TGG | 0.543631 | 1_4:-68349236 | Msa0180470:CDS |
CAAGAATCCAGAAAAGCGTC+CGG | 0.548093 | 1_4:-68348050 | Msa0180470:CDS |
ACCCCTAAGACGGGGTCGGA+AGG | 0.550282 | 1_4:-68350603 | Msa0180470:CDS |
CCTAAGACGGGGTCGGAAGG+TGG | 0.552901 | 1_4:-68350600 | Msa0180470:CDS |
GAAAGTGTTGGACTGGGGTG+AGG | 0.553466 | 1_4:-68349680 | Msa0180470:CDS |
GCAGCACGCCTTGGAAGGAA+GGG | 0.554775 | 1_4:+68349330 | None:intergenic |
GCGGTCAAAACTTGCATACA+GGG | 0.554829 | 1_4:-68349251 | Msa0180470:CDS |
ACCTTCCGACCCCGTCTTAG+GGG | 0.555352 | 1_4:+68350602 | None:intergenic |
TCTAGTGAAAGTGTTGGACT+GGG | 0.556533 | 1_4:-68349686 | Msa0180470:intron |
ACTGCTTAGATTTCCACTAC+GGG | 0.563995 | 1_4:+68350560 | None:intergenic |
ACGAGCATCATTTCGGCAGG+AGG | 0.570746 | 1_4:-68349623 | Msa0180470:CDS |
TTGGCTTTGGACCTCGCAAG+AGG | 0.571638 | 1_4:-68349217 | Msa0180470:CDS |
TAGTAGGCCTAAAGAAGAGT+GGG | 0.574373 | 1_4:-68350439 | Msa0180470:CDS |
ATAACGCAGCACGCCTTGGA+AGG | 0.578105 | 1_4:+68349325 | None:intergenic |
CAGCACGCCTTGGAAGGAAG+GGG | 0.589227 | 1_4:+68349331 | None:intergenic |
CGGAAGGTGGAGCAAGCTCA+AGG | 0.591900 | 1_4:-68350587 | Msa0180470:CDS |
AAGTATAATGAAAAGATGCT+GGG | 0.594670 | 1_4:-68348074 | Msa0180470:CDS |
ATTGTTGAGTTTGTTCATGG+TGG | 0.599596 | 1_4:-68349304 | Msa0180470:CDS |
CTAGTAGGCCTAAAGAAGAG+TGG | 0.605745 | 1_4:-68350440 | Msa0180470:CDS |
ATTGATACAAGCAAAGGAGG+CGG | 0.605778 | 1_4:-68347995 | Msa0180470:CDS |
AAAATTGATACAAGCAAAGG+AGG | 0.611642 | 1_4:-68347998 | Msa0180470:CDS |
AGCTCAAGGATAACCCGTAG+TGG | 0.620891 | 1_4:-68350573 | Msa0180470:CDS |
ATGTGACACACCCTCTTGCG+AGG | 0.624994 | 1_4:+68349206 | None:intergenic |
TGGCTTTGGACCTCGCAAGA+GGG | 0.627945 | 1_4:-68349216 | Msa0180470:CDS |
TGGTACCCCTAAGACGGGGT+CGG | 0.637327 | 1_4:-68350607 | Msa0180470:CDS |
AAGATTCCTTCAGATGCTGG+TGG | 0.637414 | 1_4:-68349361 | Msa0180470:CDS |
TCTAGAAAGGCACATGAGCA+GGG | 0.641080 | 1_4:-68350484 | Msa0180470:CDS |
TCCGGAAATGAAACATGTGG+TGG | 0.645158 | 1_4:-68348032 | Msa0180470:CDS |
ATGTGCAGGTTATAAATGGT+AGG | 0.650892 | 1_4:-68348782 | Msa0180470:intron |
GCGTCCGGAAATGAAACATG+TGG | 0.656494 | 1_4:-68348035 | Msa0180470:CDS |
GCTTATGGCACTGTCTACAG+GGG | 0.663911 | 1_4:-68350369 | Msa0180470:CDS |
AGTTTATTGGAGCTTCAATG+GGG | 0.669839 | 1_4:-68349396 | Msa0180470:CDS |
ATCTTGGTACCCCTAAGACG+GGG | 0.684222 | 1_4:-68350611 | Msa0180470:CDS |
TAGGATGCAATCAAGATCTG+GGG | 0.687357 | 1_4:-68350634 | None:intergenic |
CTAGTGAAAGTGTTGGACTG+GGG | 0.690270 | 1_4:-68349685 | Msa0180470:intron |
TTCGGCAGGAGGTTACTGTG+TGG | 0.741366 | 1_4:-68349612 | Msa0180470:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATATATCAATAATTGTAA+AGG | + | chr1_4:68349392-68349411 | None:intergenic | 10.0% |
!! | TTCAAAATACTTAATATTTA+TGG | + | chr1_4:68350217-68350236 | None:intergenic | 10.0% |
!! | GAAAATAATATTAAAAATGA+CGG | + | chr1_4:68350328-68350347 | None:intergenic | 10.0% |
!!! | AAAAGTTGATTATAATAAAT+AGG | + | chr1_4:68350409-68350428 | None:intergenic | 10.0% |
!! | AACAATTCTTAATGAAAAAT+AGG | - | chr1_4:68349291-68349310 | Msa0180470:CDS | 15.0% |
!! | AATTCTTAATGAAAAATAGG+CGG | - | chr1_4:68349294-68349313 | Msa0180470:CDS | 20.0% |
!!! | AATTTGAAAATAGCTGATTT+TGG | - | chr1_4:68349533-68349552 | Msa0180470:intron | 20.0% |
!!! | TCAATAATTTGCTTTAATCT+TGG | - | chr1_4:68349750-68349769 | Msa0180470:intron | 20.0% |
!!! | GGTTTAAAACAAAAACAAAA+TGG | + | chr1_4:68350617-68350636 | None:intergenic | 20.0% |
! | ACTATCTAATCACATTGAAT+AGG | + | chr1_4:68348427-68348446 | None:intergenic | 25.0% |
! | CAATGTGATTAGATAGTATA+AGG | - | chr1_4:68348430-68348449 | Msa0180470:intron | 25.0% |
! | ACTATCTAATCACATTGAAT+AGG | + | chr1_4:68348427-68348446 | None:intergenic | 25.0% |
! | CAATGTGATTAGATAGTATA+AGG | - | chr1_4:68348430-68348449 | Msa0180470:intron | 25.0% |
! | CCTATAAAATCTTTACATTG+CGG | - | chr1_4:68348710-68348729 | Msa0180470:CDS | 25.0% |
! | TGCAAACAGTATAACTAAAT+TGG | + | chr1_4:68348776-68348795 | None:intergenic | 25.0% |
!! | TTAAATAAATGAGAGTGTGA+AGG | + | chr1_4:68349023-68349042 | None:intergenic | 25.0% |
!! | TATTATCAGTTTTTACATCG+CGG | + | chr1_4:68349493-68349512 | None:intergenic | 25.0% |
! | GATATATAGGAACCAATAAA+TGG | + | chr1_4:68350161-68350180 | None:intergenic | 25.0% |
!! | ATGAATTACTTTGATAACTC+TGG | + | chr1_4:68350286-68350305 | None:intergenic | 25.0% |
! | ATTTCAAGAGAAAATGTCTA+TGG | + | chr1_4:68350353-68350372 | None:intergenic | 25.0% |
! | AAGTATAATGAAAAGATGCT+GGG | - | chr1_4:68350490-68350509 | Msa0180470:CDS | 25.0% |
! | GAAAAAATTGATACAAGCAA+AGG | - | chr1_4:68350563-68350582 | Msa0180470:CDS | 25.0% |
TAGAATTGATCTGAAGAACT+TGG | - | chr1_4:68348050-68348069 | Msa0180470:CDS | 30.0% | |
!!! | GGTTTTTTCTAGAAGTATTG+AGG | - | chr1_4:68348101-68348120 | Msa0180470:CDS | 30.0% |
ATACGATATGTTGTTGCAAA+TGG | - | chr1_4:68348171-68348190 | Msa0180470:intron | 30.0% | |
TACGATATGTTGTTGCAAAT+GGG | - | chr1_4:68348172-68348191 | Msa0180470:intron | 30.0% | |
GTATGCTGTTCAATGTTATA+AGG | - | chr1_4:68348320-68348339 | Msa0180470:intron | 30.0% | |
!! | TAAGGTATTTTACTCTCTCA+AGG | - | chr1_4:68348561-68348580 | Msa0180470:intron | 30.0% |
CATATACCGACAAATAAATG+CGG | - | chr1_4:68348657-68348676 | Msa0180470:intron | 30.0% | |
! | CCGCAATGTAAAGATTTTAT+AGG | + | chr1_4:68348713-68348732 | None:intergenic | 30.0% |
!! | CAATTTTCTAGTGAAAGTGT+TGG | - | chr1_4:68348872-68348891 | Msa0180470:intron | 30.0% |
TTCTCATTTCCTTTATGATG+TGG | - | chr1_4:68349083-68349102 | Msa0180470:intron | 30.0% | |
! | GTTATTGTTGAGTTTGTTCA+TGG | - | chr1_4:68349257-68349276 | Msa0180470:CDS | 30.0% |
! | ACAAATAAACTTGGTTTGAG+AGG | + | chr1_4:68349425-68349444 | None:intergenic | 30.0% |
CAATGGGAAACAAATAAACT+TGG | + | chr1_4:68349434-68349453 | None:intergenic | 30.0% | |
TAGATAACTAAGACTGCAAT+GGG | + | chr1_4:68349450-68349469 | None:intergenic | 30.0% | |
! | AATTCGCTCTAGATATTATG+CGG | - | chr1_4:68349650-68349669 | Msa0180470:CDS | 30.0% |
AACTATGTGCAGGTTATAAA+TGG | - | chr1_4:68349778-68349797 | Msa0180470:intron | 30.0% | |
GCAAAGCTTAGATTCATATA+AGG | + | chr1_4:68349877-68349896 | None:intergenic | 30.0% | |
GAAAAGAATATGAGAGTTCA+TGG | + | chr1_4:68349946-68349965 | None:intergenic | 30.0% | |
GATTTATTACGTGTTTGGAT+TGG | - | chr1_4:68350011-68350030 | Msa0180470:intron | 30.0% | |
!!! | TCTTAGCGTATGTTTTTTCA+GGG | + | chr1_4:68350075-68350094 | None:intergenic | 30.0% |
!!! | TTCTTAGCGTATGTTTTTTC+AGG | + | chr1_4:68350076-68350095 | None:intergenic | 30.0% |
AAAACATACGCTAAGAATTG+TGG | - | chr1_4:68350079-68350098 | Msa0180470:intron | 30.0% | |
TTGTACCACTAAACAAACAT+AGG | - | chr1_4:68350130-68350149 | Msa0180470:intron | 30.0% | |
GAGTTTACTGTGTGATATAT+AGG | + | chr1_4:68350174-68350193 | None:intergenic | 30.0% | |
TATCACACAGTAAACTCTTT+AGG | - | chr1_4:68350177-68350196 | Msa0180470:intron | 30.0% | |
! | ATTATACTTGCTAATGCACT+TGG | + | chr1_4:68350479-68350498 | None:intergenic | 30.0% |
CAAGTATAATGAAAAGATGC+TGG | - | chr1_4:68350489-68350508 | Msa0180470:CDS | 30.0% | |
AAAATTGATACAAGCAAAGG+AGG | - | chr1_4:68350566-68350585 | Msa0180470:CDS | 30.0% | |
TACTGCTTAGATTTCCACTA+CGG | + | chr1_4:68348008-68348027 | None:intergenic | 35.0% | |
!! | GGAGATTGATTTGGCTAAAT+TGG | - | chr1_4:68348146-68348165 | Msa0180470:intron | 35.0% |
ACGATATGTTGTTGCAAATG+GGG | - | chr1_4:68348173-68348192 | Msa0180470:intron | 35.0% | |
AACGATTTGCATTCGTATTC+TGG | - | chr1_4:68348257-68348276 | Msa0180470:intron | 35.0% | |
CAACTTAAAACCTAGATTCG+AGG | + | chr1_4:68348377-68348396 | None:intergenic | 35.0% | |
!! | TTAAGTTGTGTTTGTTGTCG+CGG | - | chr1_4:68348389-68348408 | Msa0180470:intron | 35.0% |
GGTATTGTACTATTCTCTCA+AGG | - | chr1_4:68348451-68348470 | Msa0180470:intron | 35.0% | |
TTAAATTGTGATCGTTGTCG+CGG | - | chr1_4:68348502-68348521 | Msa0180470:intron | 35.0% | |
CCTATAGTTCCACATCATAA+AGG | + | chr1_4:68349095-68349114 | None:intergenic | 35.0% | |
CCTTTATGATGTGGAACTAT+AGG | - | chr1_4:68349092-68349111 | Msa0180470:intron | 35.0% | |
TCATTCCTCCAACAGTTTAT+TGG | - | chr1_4:68349155-68349174 | Msa0180470:intron | 35.0% | |
TTGAAGCTCCAATAAACTGT+TGG | + | chr1_4:68349166-68349185 | None:intergenic | 35.0% | |
ACAGTTTATTGGAGCTTCAA+TGG | - | chr1_4:68349166-68349185 | Msa0180470:intron | 35.0% | |
CAGTTTATTGGAGCTTCAAT+GGG | - | chr1_4:68349167-68349186 | Msa0180470:intron | 35.0% | |
AGTTTATTGGAGCTTCAATG+GGG | - | chr1_4:68349168-68349187 | Msa0180470:intron | 35.0% | |
! | ATTGTTGAGTTTGTTCATGG+TGG | - | chr1_4:68349260-68349279 | Msa0180470:CDS | 35.0% |
! | TTGTTGAGTTTGTTCATGGT+GGG | - | chr1_4:68349261-68349280 | Msa0180470:CDS | 35.0% |
GTAGATAACTAAGACTGCAA+TGG | + | chr1_4:68349451-68349470 | None:intergenic | 35.0% | |
GTAAATCCAAGTGAAATGAC+TGG | - | chr1_4:68349575-68349594 | Msa0180470:intron | 35.0% | |
CAAAGCAGAATTAATACCTC+CGG | + | chr1_4:68349629-68349648 | None:intergenic | 35.0% | |
ATGTGCAGGTTATAAATGGT+AGG | - | chr1_4:68349782-68349801 | Msa0180470:intron | 35.0% | |
!! | TTCATTAGCTTGTCTCAACT+TGG | - | chr1_4:68349985-68350004 | Msa0180470:intron | 35.0% |
GGCATGATTTATTACGTGTT+TGG | - | chr1_4:68350006-68350025 | Msa0180470:intron | 35.0% | |
!!! | TATGTTTTTTCAGGGTGGAT+TGG | + | chr1_4:68350067-68350086 | None:intergenic | 35.0% |
CTAAGCCTATGTTTGTTTAG+TGG | + | chr1_4:68350138-68350157 | None:intergenic | 35.0% | |
ACATAGGCTTAGCCATTTAT+TGG | - | chr1_4:68350146-68350165 | Msa0180470:intron | 35.0% | |
TTAAAAATGACGGCGTTACA+GGG | + | chr1_4:68350318-68350337 | None:intergenic | 35.0% | |
ATTAAAAATGACGGCGTTAC+AGG | + | chr1_4:68350319-68350338 | None:intergenic | 35.0% | |
!!! | TTTTGTTTTAAACCTGCTCG+TGG | - | chr1_4:68350623-68350642 | Msa0180470:CDS | 35.0% |
ACTGCTTAGATTTCCACTAC+GGG | + | chr1_4:68348007-68348026 | None:intergenic | 40.0% | |
ACTTGGATGCTGATCTAGAA+AGG | - | chr1_4:68348067-68348086 | Msa0180470:CDS | 40.0% | |
!! | CTAGAAGTATTGAGGCTAGT+AGG | - | chr1_4:68348109-68348128 | Msa0180470:CDS | 40.0% |
TAGTAGGCCTAAAGAAGAGT+GGG | - | chr1_4:68348125-68348144 | Msa0180470:intron | 40.0% | |
TCAATCTCCCACTCTTCTTT+AGG | + | chr1_4:68348135-68348154 | None:intergenic | 40.0% | |
AGAAGAGTGGGAGATTGATT+TGG | - | chr1_4:68348137-68348156 | Msa0180470:intron | 40.0% | |
TATGACAACCAAGATGTTGC+TGG | - | chr1_4:68348222-68348241 | Msa0180470:intron | 40.0% | |
! | ACTCTTTCAGCATCGAATCT+AGG | - | chr1_4:68348477-68348496 | Msa0180470:intron | 40.0% |
CATTGGCCGCATTTATTTGT+CGG | + | chr1_4:68348666-68348685 | None:intergenic | 40.0% | |
GACCGTAATTGCAGTTGTAA+AGG | - | chr1_4:68348687-68348706 | Msa0180470:CDS | 40.0% | |
GGCCTTTACAACTGCAATTA+CGG | + | chr1_4:68348692-68348711 | None:intergenic | 40.0% | |
AATCTTTACATTGCGGCTTC+AGG | - | chr1_4:68348717-68348736 | Msa0180470:CDS | 40.0% | |
!! | TTCTAGTGAAAGTGTTGGAC+TGG | - | chr1_4:68348877-68348896 | Msa0180470:intron | 40.0% |
!! | TCTAGTGAAAGTGTTGGACT+GGG | - | chr1_4:68348878-68348897 | Msa0180470:intron | 40.0% |
CTGCTTTACGAGCATCATTT+CGG | - | chr1_4:68348934-68348953 | Msa0180470:intron | 40.0% | |
AAGCTCCAATAAACTGTTGG+AGG | + | chr1_4:68349163-68349182 | None:intergenic | 40.0% | |
CTTAAGATTCCTTCAGATGC+TGG | - | chr1_4:68349200-68349219 | Msa0180470:intron | 40.0% | |
ATACAGGGTTGTGATTCAGT+TGG | - | chr1_4:68349328-68349347 | Msa0180470:CDS | 40.0% | |
!!! | TAGCTGATTTTGGAGTTGCT+AGG | - | chr1_4:68349543-68349562 | Msa0180470:intron | 40.0% |
!!! | AGCTGATTTTGGAGTTGCTA+GGG | - | chr1_4:68349544-68349563 | Msa0180470:intron | 40.0% |
GTACTACCAGTCATTTCACT+TGG | + | chr1_4:68349584-68349603 | None:intergenic | 40.0% | |
AGTGAAATGACTGGTAGTAC+TGG | - | chr1_4:68349584-68349603 | Msa0180470:CDS | 40.0% | |
TATTATGCGGTTCAATGCGA+TGG | - | chr1_4:68349663-68349682 | Msa0180470:CDS | 40.0% | |
CACTCACGTGACTAAGAAAT+TGG | - | chr1_4:68349718-68349737 | Msa0180470:intron | 40.0% | |
ACATCACAGCTTCTGTTGTA+AGG | + | chr1_4:68349808-68349827 | None:intergenic | 40.0% | |
!!! | TAGCGTATGTTTTTTCAGGG+TGG | + | chr1_4:68350072-68350091 | None:intergenic | 40.0% |
TCCACCACATGTTTCATTTC+CGG | + | chr1_4:68350536-68350555 | None:intergenic | 40.0% | |
! | GAAACATGTGGTGGAAATGT+TGG | - | chr1_4:68350541-68350560 | Msa0180470:CDS | 40.0% |
ATTGATACAAGCAAAGGAGG+CGG | - | chr1_4:68350569-68350588 | Msa0180470:CDS | 40.0% | |
CAATCAAGATCTGGGGATCT+TGG | - | chr1_4:68347937-68347956 | Msa0180470:CDS | 45.0% | |
! | ATCTAGAAAGGCACATGAGC+AGG | - | chr1_4:68348079-68348098 | Msa0180470:CDS | 45.0% |
! | TCTAGAAAGGCACATGAGCA+GGG | - | chr1_4:68348080-68348099 | Msa0180470:CDS | 45.0% |
CTAGTAGGCCTAAAGAAGAG+TGG | - | chr1_4:68348124-68348143 | Msa0180470:intron | 45.0% | |
GTTGTTGCAAATGGGGCTTA+TGG | - | chr1_4:68348180-68348199 | Msa0180470:intron | 45.0% | |
TACACGTACCAGCAACATCT+TGG | + | chr1_4:68348233-68348252 | None:intergenic | 45.0% | |
GTTCTTTCAGCCTCGAATCT+AGG | - | chr1_4:68348364-68348383 | Msa0180470:intron | 45.0% | |
AACTGCAATTACGGTCGCAT+TGG | + | chr1_4:68348683-68348702 | None:intergenic | 45.0% | |
!! | CTAGTGAAAGTGTTGGACTG+GGG | - | chr1_4:68348879-68348898 | Msa0180470:intron | 45.0% |
TTTACGAGCATCATTTCGGC+AGG | - | chr1_4:68348938-68348957 | Msa0180470:intron | 45.0% | |
AAGATTCCTTCAGATGCTGG+TGG | - | chr1_4:68349203-68349222 | Msa0180470:intron | 45.0% | |
! | TTTTGACCACCAGCATCTGA+AGG | + | chr1_4:68349212-68349231 | None:intergenic | 45.0% |
TCAAAATCCCCTTCCTTCCA+AGG | - | chr1_4:68349226-68349245 | Msa0180470:CDS | 45.0% | |
GCGGTCAAAACTTGCATACA+GGG | - | chr1_4:68349313-68349332 | Msa0180470:CDS | 45.0% | |
! | GGTTGTGATTCAGTTGGCTT+TGG | - | chr1_4:68349334-68349353 | Msa0180470:CDS | 45.0% |
CTTGGCGTTAAACTATGTGC+AGG | - | chr1_4:68349768-68349787 | Msa0180470:intron | 45.0% | |
AGCTGTGATGTCTACAGCTT+TGG | - | chr1_4:68349817-68349836 | Msa0180470:intron | 45.0% | |
TTCTGCTGCTGTTGCTGATA+AGG | - | chr1_4:68349903-68349922 | Msa0180470:intron | 45.0% | |
AATGCACTTGGACAGCATCT+AGG | + | chr1_4:68350467-68350486 | None:intergenic | 45.0% | |
!! | CAAGAATCCAGAAAAGCGTC+CGG | - | chr1_4:68350514-68350533 | Msa0180470:CDS | 45.0% |
! | TTCATTTCCGGACGCTTTTC+TGG | + | chr1_4:68350524-68350543 | None:intergenic | 45.0% |
TCCGGAAATGAAACATGTGG+TGG | - | chr1_4:68350532-68350551 | Msa0180470:CDS | 45.0% | |
GGATCTTGGTACCCCTAAGA+CGG | - | chr1_4:68347951-68347970 | Msa0180470:CDS | 50.0% | |
GATCTTGGTACCCCTAAGAC+GGG | - | chr1_4:68347952-68347971 | Msa0180470:CDS | 50.0% | |
ATCTTGGTACCCCTAAGACG+GGG | - | chr1_4:68347953-68347972 | Msa0180470:CDS | 50.0% | |
AGCTCAAGGATAACCCGTAG+TGG | - | chr1_4:68347991-68348010 | Msa0180470:CDS | 50.0% | |
GGCTTATGGCACTGTCTACA+GGG | - | chr1_4:68348194-68348213 | Msa0180470:intron | 50.0% | |
GCTTATGGCACTGTCTACAG+GGG | - | chr1_4:68348195-68348214 | Msa0180470:intron | 50.0% | |
AACAATAACGCAGCACGCCT+TGG | + | chr1_4:68349246-68349265 | None:intergenic | 50.0% | |
GGCGGTCAAAACTTGCATAC+AGG | - | chr1_4:68349312-68349331 | Msa0180470:CDS | 50.0% | |
TGGAGTTGCTAGGGTTGAAG+CGG | - | chr1_4:68349553-68349572 | Msa0180470:intron | 50.0% | |
TACTGGCACCGTTGGGTATA+TGG | - | chr1_4:68349601-68349620 | Msa0180470:CDS | 50.0% | |
! | ACAGCTTTGGCATCTGCTTG+TGG | - | chr1_4:68349830-68349849 | Msa0180470:intron | 50.0% |
! | CAGCTTTGGCATCTGCTTGT+GGG | - | chr1_4:68349831-68349850 | Msa0180470:intron | 50.0% |
GGACAGCATCTAGGAATCTC+TGG | + | chr1_4:68350458-68350477 | None:intergenic | 50.0% | |
GCGTCCGGAAATGAAACATG+TGG | - | chr1_4:68350529-68350548 | Msa0180470:CDS | 50.0% | |
GGGCTTATGGCACTGTCTAC+AGG | - | chr1_4:68348193-68348212 | Msa0180470:intron | 55.0% | |
!! | GAAAGTGTTGGACTGGGGTG+AGG | - | chr1_4:68348884-68348903 | Msa0180470:intron | 55.0% |
AGCAGCAGTTTCAGCAGCAG+TGG | + | chr1_4:68348919-68348938 | None:intergenic | 55.0% | |
ACGAGCATCATTTCGGCAGG+AGG | - | chr1_4:68348941-68348960 | Msa0180470:intron | 55.0% | |
TTCGGCAGGAGGTTACTGTG+TGG | - | chr1_4:68348952-68348971 | Msa0180470:intron | 55.0% | |
ATAACGCAGCACGCCTTGGA+AGG | + | chr1_4:68349242-68349261 | None:intergenic | 55.0% | |
!! | TTGGCTTTGGACCTCGCAAG+AGG | - | chr1_4:68349347-68349366 | Msa0180470:CDS | 55.0% |
!! | TGGCTTTGGACCTCGCAAGA+GGG | - | chr1_4:68349348-68349367 | Msa0180470:CDS | 55.0% |
ATGTGACACACCCTCTTGCG+AGG | + | chr1_4:68349361-68349380 | None:intergenic | 55.0% | |
!! | ACTGGTAGTACTGGCACCGT+TGG | - | chr1_4:68349593-68349612 | Msa0180470:CDS | 55.0% |
!! | CTGGTAGTACTGGCACCGTT+GGG | - | chr1_4:68349594-68349613 | Msa0180470:CDS | 55.0% |
CACCGTTGGGTATATGGCAC+CGG | - | chr1_4:68349607-68349626 | Msa0180470:CDS | 55.0% | |
!! | CTCCGGTGCCATATACCCAA+CGG | + | chr1_4:68349612-68349631 | None:intergenic | 55.0% |
TGGTACCCCTAAGACGGGGT+CGG | - | chr1_4:68347957-68347976 | Msa0180470:CDS | 60.0% | |
ACCTTCCGACCCCGTCTTAG+GGG | + | chr1_4:68347965-68347984 | None:intergenic | 60.0% | |
CACCTTCCGACCCCGTCTTA+GGG | + | chr1_4:68347966-68347985 | None:intergenic | 60.0% | |
CGGAAGGTGGAGCAAGCTCA+AGG | - | chr1_4:68347977-68347996 | Msa0180470:CDS | 60.0% | |
! | GTGTTGGACTGGGGTGAGGA+TGG | - | chr1_4:68348888-68348907 | Msa0180470:intron | 60.0% |
CAGCACGCCTTGGAAGGAAG+GGG | + | chr1_4:68349236-68349255 | None:intergenic | 60.0% | |
GCAGCACGCCTTGGAAGGAA+GGG | + | chr1_4:68349237-68349256 | None:intergenic | 60.0% | |
! | CGTTGGGTATATGGCACCGG+AGG | - | chr1_4:68349610-68349629 | Msa0180470:CDS | 60.0% |
ACCCCTAAGACGGGGTCGGA+AGG | - | chr1_4:68347961-68347980 | Msa0180470:CDS | 65.0% | |
CCACCTTCCGACCCCGTCTT+AGG | + | chr1_4:68347967-68347986 | None:intergenic | 65.0% | |
CCTAAGACGGGGTCGGAAGG+TGG | - | chr1_4:68347964-68347983 | Msa0180470:CDS | 65.0% | |
CGCAGCACGCCTTGGAAGGA+AGG | + | chr1_4:68349238-68349257 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 68347934 | 68350652 | 68347934 | ID=Msa0180470;Name=Msa0180470 |
chr1_4 | mRNA | 68347934 | 68350652 | 68347934 | ID=Msa0180470-mRNA-1;Parent=Msa0180470;Name=Msa0180470-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0.75|0.8|5|0|325 |
chr1_4 | exon | 68350343 | 68350652 | 68350343 | ID=Msa0180470-mRNA-1:exon:22587;Parent=Msa0180470-mRNA-1 |
chr1_4 | exon | 68349582 | 68349703 | 68349582 | ID=Msa0180470-mRNA-1:exon:22586;Parent=Msa0180470-mRNA-1 |
chr1_4 | exon | 68349213 | 68349416 | 68349213 | ID=Msa0180470-mRNA-1:exon:22585;Parent=Msa0180470-mRNA-1 |
chr1_4 | exon | 68348662 | 68348796 | 68348662 | ID=Msa0180470-mRNA-1:exon:22584;Parent=Msa0180470-mRNA-1 |
chr1_4 | exon | 68347934 | 68348140 | 68347934 | ID=Msa0180470-mRNA-1:exon:22583;Parent=Msa0180470-mRNA-1 |
chr1_4 | CDS | 68350343 | 68350652 | 68350343 | ID=Msa0180470-mRNA-1:cds;Parent=Msa0180470-mRNA-1 |
chr1_4 | CDS | 68349582 | 68349703 | 68349582 | ID=Msa0180470-mRNA-1:cds;Parent=Msa0180470-mRNA-1 |
chr1_4 | CDS | 68349213 | 68349416 | 68349213 | ID=Msa0180470-mRNA-1:cds;Parent=Msa0180470-mRNA-1 |
chr1_4 | CDS | 68348662 | 68348796 | 68348662 | ID=Msa0180470-mRNA-1:cds;Parent=Msa0180470-mRNA-1 |
chr1_4 | CDS | 68347934 | 68348140 | 68347934 | ID=Msa0180470-mRNA-1:cds;Parent=Msa0180470-mRNA-1 |
Gene Sequence |
Protein sequence |