AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182000 MtrunA17_Chr1g0201751 97.551 245 4 1 1 245 1 243 6.34e-173 475
Msa0182000 MtrunA17_Chr4g0051101 40.933 193 58 5 44 221 36 187 1.85e-25 99.0
Msa0182000 MtrunA17_Chr8g0355121 33.195 241 122 8 28 243 85 311 2.85e-18 82.0
Msa0182000 MtrunA17_Chr3g0080341 31.925 213 88 5 42 209 96 296 7.19e-17 78.6
Msa0182000 MtrunA17_Chr2g0321411 32.273 220 118 8 23 223 62 269 9.92e-16 74.7
Msa0182000 MtrunA17_Chr3g0133971 43.925 107 49 3 142 245 333 431 1.49e-15 75.5
Msa0182000 MtrunA17_Chr5g0440841 35.135 185 85 5 32 209 87 243 1.40e-14 71.2
Msa0182000 MtrunA17_Chr4g0044771 56.250 64 24 1 148 211 289 348 3.15e-13 68.6
Msa0182000 MtrunA17_Chr7g0254991 47.674 86 31 2 159 242 244 317 3.30e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182000 AT5G44080.1 46.886 273 82 9 9 245 70 315 1.81e-66 208
Msa0182000 AT1G03970.1 49.573 234 85 8 19 245 63 270 2.77e-54 176
Msa0182000 AT1G45249.1 46.729 107 45 3 142 245 319 416 6.93e-16 76.6
Msa0182000 AT1G45249.7 46.729 107 45 3 142 245 334 431 9.19e-16 76.3
Msa0182000 AT1G45249.6 46.729 107 45 3 142 245 334 431 9.19e-16 76.3
Msa0182000 AT2G36270.1 44.628 121 57 4 126 243 321 434 1.87e-15 75.5
Msa0182000 AT2G36270.2 44.628 121 57 4 126 243 321 434 1.87e-15 75.5
Msa0182000 AT2G36270.3 49.474 95 45 2 126 220 321 412 1.29e-14 73.2
Msa0182000 AT3G56850.1 50.000 86 33 1 157 242 219 294 1.78e-14 71.6
Msa0182000 AT2G41070.4 31.944 216 100 8 42 242 85 268 2.80e-13 68.2
Msa0182000 AT1G49720.1 45.361 97 48 2 151 245 299 392 2.98e-13 68.9
Msa0182000 AT1G49720.3 45.361 97 48 2 151 245 299 392 2.98e-13 68.9
Msa0182000 AT2G41070.3 31.944 216 100 8 42 242 76 259 3.43e-13 67.8
Msa0182000 AT2G41070.1 31.944 216 100 8 42 242 76 259 3.43e-13 67.8
Msa0182000 AT2G41070.2 31.944 216 100 8 42 242 76 259 3.43e-13 67.8
Msa0182000 AT1G45249.3 42.373 118 45 4 142 245 319 427 5.37e-13 68.2
Msa0182000 AT3G19290.3 45.455 99 45 3 151 245 339 432 6.78e-13 68.2
Msa0182000 AT4G34000.1 53.125 64 30 0 159 222 368 431 1.37e-12 67.0
Msa0182000 AT4G34000.4 53.125 64 30 0 159 222 368 431 1.37e-12 67.0
Msa0182000 AT4G34000.2 53.125 64 30 0 159 222 368 431 1.37e-12 67.0
Msa0182000 AT3G19290.4 59.016 61 25 0 151 211 339 399 1.38e-12 67.0
Msa0182000 AT2G41070.5 33.871 186 84 7 42 211 76 238 1.55e-12 65.9
Msa0182000 AT3G19290.1 59.016 61 25 0 151 211 339 399 1.67e-12 67.0
Msa0182000 AT3G19290.5 59.016 61 25 0 151 211 339 399 1.67e-12 67.0
Msa0182000 AT4G34000.3 45.946 74 33 1 159 225 368 441 1.15e-11 64.3
Msa0182000 AT1G49720.2 49.296 71 36 0 151 221 299 369 3.34e-11 62.8

Find 118 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTGGGATTGTGATTT+TGG 0.132697 1_4:+70414229 None:intergenic
GATTGTGGGAAATAATAAAA+TGG 0.217623 1_4:-70409729 Msa0182000:three_prime_UTR
ATAGAATAGATCTAAGAATT+AGG 0.232080 1_4:+70414201 None:intergenic
GAAGATGACGATTCCGTTAT+CGG 0.332969 1_4:-70413898 Msa0182000:CDS
TTATCCAATTGCTCCATAAC+AGG 0.338573 1_4:+70413717 None:intergenic
CAAGGAATTGAAAACGTTGA+TGG 0.345371 1_4:-70413831 Msa0182000:CDS
GATTTGATCGTCGAGGAAAT+TGG 0.346078 1_4:+70414103 None:intergenic
TGGCAATGGGAATGGGAATG+GGG 0.347924 1_4:-70413781 Msa0182000:CDS
ATGGCAATGGGAATGGGAAT+GGG 0.354730 1_4:-70413782 Msa0182000:CDS
AACGTTGATGGGTCGGTGAT+AGG 0.356163 1_4:-70413819 Msa0182000:CDS
GATGGGTCGGTGATAGGGTT+TGG 0.356739 1_4:-70413813 Msa0182000:CDS
CGGTGATAGGGTTTGGGAAT+GGG 0.358384 1_4:-70413806 Msa0182000:CDS
TAGAATAGATCTAAGAATTA+GGG 0.364886 1_4:+70414202 None:intergenic
GTGGAAATGGTTGAAGGTGG+GGG 0.368454 1_4:-70413759 Msa0182000:CDS
CTCGAACCGTCGACGATGTC+TGG 0.371504 1_4:-70414055 Msa0182000:CDS
ATGGGTCGGTGATAGGGTTT+GGG 0.380377 1_4:-70413812 Msa0182000:CDS
GGCCTTCGCTGCTCCACAAC+AGG 0.380747 1_4:+70409827 None:intergenic
TTAGGCTTATCAAGTGGAAT+TGG 0.384866 1_4:-70413389 Msa0182000:intron
GAAGAGAGGACGGCCTGTTA+TGG 0.389128 1_4:-70413730 Msa0182000:CDS
ATTTCTTATGTACTCCATTC+AGG 0.390544 1_4:+70409622 None:intergenic
GGGGTGGAAATGGTTGAAGG+TGG 0.394857 1_4:-70413762 Msa0182000:CDS
TGTGCAGGCTGAGAGGAAAA+AGG 0.400339 1_4:-70412397 Msa0182000:intron
GAATGGGAATGGGGTGGAAA+TGG 0.406361 1_4:-70413772 Msa0182000:CDS
GGTGGAAATGGTTGAAGGTG+GGG 0.410518 1_4:-70413760 Msa0182000:CDS
GAGAATCTGCTGCTAGGTCT+AGG 0.414539 1_4:-70413656 Msa0182000:CDS
TGAGGATGAGGAGGAGGGTG+AGG 0.414838 1_4:-70413925 Msa0182000:CDS
AATGGGAATGGCAATGGGAA+TGG 0.421084 1_4:-70413789 Msa0182000:CDS
ATGGGAATGGCAATGGGAAT+GGG 0.425200 1_4:-70413788 Msa0182000:CDS
TCGGTGATAGGGTTTGGGAA+TGG 0.430970 1_4:-70413807 Msa0182000:CDS
AATGGCAATGGGAATGGGAA+TGG 0.433154 1_4:-70413783 Msa0182000:CDS
ATTGTGGGAAATAATAAAAT+GGG 0.433816 1_4:-70409728 Msa0182000:three_prime_UTR
GCGGTGGTGAAGTGAGGTTT+AGG 0.434316 1_4:+70414125 None:intergenic
GGCGAGTGTAAAGAGGTAGT+TGG 0.436621 1_4:-70414314 Msa0182000:five_prime_UTR
CAGTGGTAGATCATATTTGC+TGG 0.440876 1_4:-70409773 Msa0182000:exon
ACGGCCTGTTATGGAGCAAT+TGG 0.442422 1_4:-70413721 Msa0182000:CDS
TTGGGAATGGGAATGGCAAT+GGG 0.446748 1_4:-70413794 Msa0182000:CDS
TTTGGGAATGGGAATGGCAA+TGG 0.453383 1_4:-70413795 Msa0182000:CDS
GCGAGTGTAAAGAGGTAGTT+GGG 0.455860 1_4:-70414313 Msa0182000:five_prime_UTR
GCGATGTGATCTCCGGCGAC+AGG 0.458449 1_4:-70414016 Msa0182000:CDS
CCACTGAGCGTCTCCGATAA+CGG 0.464675 1_4:+70413885 None:intergenic
TGCGGTTGAGGATGAGGAGG+AGG 0.464821 1_4:-70413931 Msa0182000:CDS
TGGAAATGGTTGAAGGTGGG+GGG 0.467922 1_4:-70413758 Msa0182000:CDS
ACGTTGATGGGTCGGTGATA+GGG 0.467935 1_4:-70413818 Msa0182000:CDS
TCAAGTGGAATTGGAGTCCT+TGG 0.472571 1_4:-70413380 Msa0182000:CDS
CGATGAGATGATGACGTTGG+AGG 0.475948 1_4:-70413973 Msa0182000:CDS
AGATGGAGAAGAAGGTGGAT+CGG 0.476558 1_4:+70414148 None:intergenic
TTCTTTACACTCCCTGTCGC+CGG 0.477248 1_4:+70414004 None:intergenic
GGGTGGAAATGGTTGAAGGT+GGG 0.482957 1_4:-70413761 Msa0182000:CDS
TCTTAGATCTATTCTATCCA+TGG 0.484430 1_4:-70414195 Msa0182000:exon
TAAAAGCAGAATTGTGAAGT+TGG 0.484596 1_4:-70409576 Msa0182000:three_prime_UTR
TGTGAAAGCTGGTGCGGTTG+AGG 0.485583 1_4:-70413943 Msa0182000:CDS
GGTTAATGATAAGAGATAGA+AGG 0.487260 1_4:-70409653 Msa0182000:three_prime_UTR
GGTTTAGGAGATGGAGAAGA+AGG 0.490179 1_4:+70414140 None:intergenic
CAATGGGAATGGGAATGGGG+TGG 0.494701 1_4:-70413778 Msa0182000:CDS
TGACAAGTTGATGAAGGAAA+AGG 0.495815 1_4:-70413335 Msa0182000:intron
GTGAAGTGAGGTTTAGGAGA+TGG 0.499875 1_4:+70414131 None:intergenic
TAGGTCTAGGGAACGCAAGC+AGG 0.503430 1_4:-70413643 Msa0182000:intron
TCGAGGAGTGGCGACGGCGT+CGG 0.506745 1_4:+70414073 None:intergenic
GGAAAATGACAAGTTGATGA+AGG 0.507651 1_4:-70413341 Msa0182000:CDS
AGCTGGTGCGGTTGAGGATG+AGG 0.510481 1_4:-70413937 Msa0182000:CDS
ATAGGGTTTGGGAATGGGAA+TGG 0.514457 1_4:-70413801 Msa0182000:CDS
AATGGGGTGGAAATGGTTGA+AGG 0.515608 1_4:-70413765 Msa0182000:CDS
GAGTGGCGACGGCGTCGGCG+AGG 0.520677 1_4:+70414078 None:intergenic
ATCGGAAGAAGGCATGAGCT+TGG 0.521805 1_4:+70414166 None:intergenic
AAGGAATTGAAAACGTTGAT+GGG 0.523079 1_4:-70413830 Msa0182000:CDS
TCGGAGACGCTCAGTGGTAG+TGG 0.524000 1_4:-70413879 Msa0182000:CDS
GTCTGCACAGGGGTGAGACC+AGG 0.526399 1_4:+70409524 None:intergenic
GTCGCCGGCGATGTGATCTC+CGG 0.529993 1_4:-70414023 Msa0182000:CDS
AGAAGGAATCAGTACCTGAA+TGG 0.529994 1_4:-70409636 Msa0182000:three_prime_UTR
GAAGAAGGTGGATCGGAAGA+AGG 0.530586 1_4:+70414155 None:intergenic
TTAGGAGATGGAGAAGAAGG+TGG 0.530669 1_4:+70414143 None:intergenic
TAGATACAATGTAGGCATCC+TGG 0.531044 1_4:-70409542 Msa0182000:three_prime_UTR
ATCAAAATAGTTAGTCTCAA+GGG 0.531521 1_4:-70409683 Msa0182000:three_prime_UTR
AATCAAAATAGTTAGTCTCA+AGG 0.538063 1_4:-70409684 Msa0182000:three_prime_UTR
CTCCTCTAGCTTCACCGCCA+AGG 0.538630 1_4:+70413363 None:intergenic
AAATTGGCGGTGGTGAAGTG+AGG 0.542267 1_4:+70414119 None:intergenic
GACAAGTGGCGAGTGTAAAG+AGG 0.544331 1_4:-70414321 Msa0182000:five_prime_UTR
GCCGCCACGGTTACTCCGTA+GGG 0.544674 1_4:-70409807 Msa0182000:CDS
GCGGTTGAGGATGAGGAGGA+GGG 0.553341 1_4:-70413930 Msa0182000:CDS
GTTAGTCTCAAGGGTAATTG+TGG 0.560484 1_4:-70409674 Msa0182000:three_prime_UTR
CATGAGCTTGGAAGAAGCCA+TGG 0.560742 1_4:+70414178 None:intergenic
AGAATCTGCTGCTAGGTCTA+GGG 0.563610 1_4:-70413655 Msa0182000:CDS
TTCCTGTTGTGGAGCAGCGA+AGG 0.563922 1_4:-70409829 Msa0182000:CDS
GGCCGCCACGGTTACTCCGT+AGG 0.566727 1_4:-70409808 Msa0182000:CDS
CTCCAACGTCATCATCTCAT+CGG 0.569861 1_4:+70413974 None:intergenic
ATCGTCGAGGAAATTGGCGG+TGG 0.569885 1_4:+70414109 None:intergenic
AGAATAGAGAATCTGCTGCT+AGG 0.572500 1_4:-70413662 Msa0182000:CDS
AGTGGCGACGGCGTCGGCGA+GGG 0.573280 1_4:+70414079 None:intergenic
ATCGTCGACGGTTCGAGGAG+TGG 0.573362 1_4:+70414061 None:intergenic
AGATGTGAACTGAAGATTGT+GGG 0.576025 1_4:-70409743 Msa0182000:three_prime_UTR
CAGACATCGTCGACGGTTCG+AGG 0.576404 1_4:+70414056 None:intergenic
GACGGTTCGAGGAGTGGCGA+CGG 0.580962 1_4:+70414067 None:intergenic
AATTGAAAACGTTGATGGGT+CGG 0.585668 1_4:-70413826 Msa0182000:CDS
CGATGTGATCTCCGGCGACA+GGG 0.589289 1_4:-70414015 Msa0182000:CDS
GTCTGGCGAGAGATCGTCGC+CGG 0.590254 1_4:-70414038 Msa0182000:CDS
AAGCTGCTCAGCAGAGACAG+AGG 0.593315 1_4:-70413695 Msa0182000:CDS
TTCCGATGAGATGATGACGT+TGG 0.607504 1_4:-70413976 Msa0182000:CDS
TTGATCGTCGAGGAAATTGG+CGG 0.607652 1_4:+70414106 None:intergenic
CTCTCGCCAGACATCGTCGA+CGG 0.611545 1_4:+70414049 None:intergenic
TGGAGCAGCGAAGGCCGCCA+CGG 0.612735 1_4:-70409820 Msa0182000:CDS
ATGTAGTTTAGATACAATGT+AGG 0.614808 1_4:-70409550 Msa0182000:three_prime_UTR
GTCGCCGGAGATCACATCGC+CGG 0.615098 1_4:+70414019 None:intergenic
GTAGGGTTCGCTCCTTGCAG+TGG 0.618144 1_4:-70409790 Msa0182000:CDS
AGTGGAATTGGAGTCCTTGG+CGG 0.619638 1_4:-70413377 Msa0182000:CDS
GTCCTTGGCGGTGAAGCTAG+AGG 0.622234 1_4:-70413365 Msa0182000:CDS
TTCTGACAGTGTAGAAGCTG+CGG 0.626318 1_4:+70414281 None:intergenic
TACATTGTATCTAAACTACA+TGG 0.630821 1_4:+70409552 None:intergenic
CCGTTATCGGAGACGCTCAG+TGG 0.634758 1_4:-70413885 Msa0182000:CDS
ATATTCTTGTGCAGGCTGAG+AGG 0.635094 1_4:-70412404 Msa0182000:intron
AAATATGATCTACCACTGCA+AGG 0.655779 1_4:+70409778 None:intergenic
AAGATGTGAACTGAAGATTG+TGG 0.663194 1_4:-70409744 Msa0182000:three_prime_UTR
TGGTGCGGTTGAGGATGAGG+AGG 0.665882 1_4:-70413934 Msa0182000:CDS
TGGTAGATCATATTTGCTGG+TGG 0.666125 1_4:-70409770 Msa0182000:exon
CGAGGGAGATTTGATCGTCG+AGG 0.673387 1_4:+70414096 None:intergenic
ACTGCAAGGAGCGAACCCTA+CGG 0.673999 1_4:+70409792 None:intergenic
CTTGGCGGTGAAGCTAGAGG+AGG 0.703301 1_4:-70413362 Msa0182000:CDS
CGAACCCTACGGAGTAACCG+TGG 0.709737 1_4:+70409803 None:intergenic
ACCCTACGGAGTAACCGTGG+CGG 0.761547 1_4:+70409806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAATACTATAGAAA+AGG + chr1_4:70411769-70411788 None:intergenic 10.0%
!!! AATAATTTTAAACTCATTTT+GGG + chr1_4:70413117-70413136 None:intergenic 10.0%
!!! TAATAATTTTAAACTCATTT+TGG + chr1_4:70413118-70413137 None:intergenic 10.0%
!!! AAAATGAGTTTAAAATTATT+AGG - chr1_4:70413117-70413136 Msa0182000:intron 10.0%
!!! TTTAAAATTATTAGGTATAA+AGG - chr1_4:70413125-70413144 Msa0182000:intron 10.0%
!! AAATAATATGTATAAATAAC+AGG + chr1_4:70413626-70413645 None:intergenic 10.0%
!! TGAAAGAAAAAATATTTAAA+GGG + chr1_4:70413668-70413687 None:intergenic 10.0%
!!! ATTTTGACATTTCATAAATT+AGG - chr1_4:70410870-70410889 Msa0182000:intron 15.0%
!!! TTTTGACATTTCATAAATTA+GGG - chr1_4:70410871-70410890 Msa0182000:intron 15.0%
!! TTTGAAAAAAAAAAAACAGA+AGG + chr1_4:70411127-70411146 None:intergenic 15.0%
!! TCATGATATCAATAATTTAT+AGG - chr1_4:70412016-70412035 Msa0182000:intron 15.0%
!! CATGATATCAATAATTTATA+GGG - chr1_4:70412017-70412036 Msa0182000:intron 15.0%
!!! TTTTTTTTAATGAATTTCCT+TGG - chr1_4:70412291-70412310 Msa0182000:intron 15.0%
!!! ATAATTTTAAACTCATTTTG+GGG + chr1_4:70413116-70413135 None:intergenic 15.0%
!! ATGTGAAATATAGAATTAAA+TGG - chr1_4:70413387-70413406 Msa0182000:CDS 15.0%
!! CTGAAAGAAAAAATATTTAA+AGG + chr1_4:70413669-70413688 None:intergenic 15.0%
!! TAGAATAGATCTAAGAATTA+GGG + chr1_4:70409650-70409669 None:intergenic 20.0%
!! ATAGAATAGATCTAAGAATT+AGG + chr1_4:70409651-70409670 None:intergenic 20.0%
!!! GCTGATTTATAAAAAAATTG+CGG + chr1_4:70410559-70410578 None:intergenic 20.0%
!! ATTATAGTAAATTTCCGAAA+TGG - chr1_4:70410626-70410645 Msa0182000:intron 20.0%
!! CAAATATATAAAAACAAGCA+TGG + chr1_4:70411298-70411317 None:intergenic 20.0%
!!! CATGCTTGTTTTTATATATT+TGG - chr1_4:70411296-70411315 Msa0182000:intron 20.0%
!!! TATATATTTGGAATGTTTCT+TGG - chr1_4:70411308-70411327 Msa0182000:intron 20.0%
!! TCTAAATCTGAAAATTCAAA+GGG + chr1_4:70411383-70411402 None:intergenic 20.0%
!!! TATTTTATGCTATTGTTTGT+TGG - chr1_4:70411500-70411519 Msa0182000:intron 20.0%
!! AAAACACTTAAAAATGAACT+GGG + chr1_4:70411811-70411830 None:intergenic 20.0%
!! AAAAACACTTAAAAATGAAC+TGG + chr1_4:70411812-70411831 None:intergenic 20.0%
!! TGAAAAGGATCTTATATTAA+GGG + chr1_4:70411895-70411914 None:intergenic 20.0%
!! TTGAAAAGGATCTTATATTA+AGG + chr1_4:70411896-70411915 None:intergenic 20.0%
!!! ATGCATATAGAATTTTGAAA+AGG + chr1_4:70411910-70411929 None:intergenic 20.0%
!! TACATTGTGTTTATAAATCA+CGG - chr1_4:70412612-70412631 Msa0182000:intron 20.0%
!! ACACAAAACTAAAAAAACAA+CGG + chr1_4:70413045-70413064 None:intergenic 20.0%
!! TCAAGATTCATAATTAACAA+TGG + chr1_4:70413167-70413186 None:intergenic 20.0%
!! TAATTCTGTCAAATAGTTAA+AGG - chr1_4:70413327-70413346 Msa0182000:intron 20.0%
!! ATTGTGGGAAATAATAAAAT+GGG - chr1_4:70414121-70414140 Msa0182000:CDS 20.0%
!!! GAATTAGGGTTTTTGAAATT+GGG + chr1_4:70409636-70409655 None:intergenic 25.0%
!!! AGAATTAGGGTTTTTGAAAT+TGG + chr1_4:70409637-70409656 None:intergenic 25.0%
!!! TGGTTTTTTGACTTTTGTTT+TGG - chr1_4:70410425-70410444 Msa0182000:intron 25.0%
!!! TTTTGGTTTTGTGTGATTTT+AGG - chr1_4:70410442-70410461 Msa0182000:intron 25.0%
!! CTCTATTTAAACTTTGTTGT+CGG - chr1_4:70410696-70410715 Msa0182000:intron 25.0%
! TTCTAAACTATCATCAATAG+AGG + chr1_4:70410790-70410809 None:intergenic 25.0%
! AAACAGAAGGATTTCAATAA+TGG + chr1_4:70411114-70411133 None:intergenic 25.0%
!! CACAAATAGAATGAGATTTT+AGG + chr1_4:70411232-70411251 None:intergenic 25.0%
! CTCTAAATCTGAAAATTCAA+AGG + chr1_4:70411384-70411403 None:intergenic 25.0%
! ATATTATCTGTTAGATGTCA+GGG + chr1_4:70411429-70411448 None:intergenic 25.0%
! AATATTATCTGTTAGATGTC+AGG + chr1_4:70411430-70411449 None:intergenic 25.0%
! CAGTTATATTGTTTACCAAA+AGG + chr1_4:70411537-70411556 None:intergenic 25.0%
! AAACACTTAAAAATGAACTG+GGG + chr1_4:70411810-70411829 None:intergenic 25.0%
! TATTAAGGGACAATAAAAAG+TGG + chr1_4:70411881-70411900 None:intergenic 25.0%
!! AAAGTTTTTCACAAATACCA+AGG + chr1_4:70412311-70412330 None:intergenic 25.0%
! AAACCAACACTTAAAAGAAA+TGG - chr1_4:70412331-70412350 Msa0182000:intron 25.0%
!!! TGTTAGAATTTTTTATACCC+TGG + chr1_4:70412425-70412444 None:intergenic 25.0%
! TATAAACACAATGTAATTGC+AGG + chr1_4:70412607-70412626 None:intergenic 25.0%
! TTACTATCAATTAGTATGCT+TGG - chr1_4:70412772-70412791 Msa0182000:intron 25.0%
! TACTATCAATTAGTATGCTT+GGG - chr1_4:70412773-70412792 Msa0182000:intron 25.0%
! ATTAGGTATAAAGGTAGATT+TGG - chr1_4:70413134-70413153 Msa0182000:intron 25.0%
! TTAGGTATAAAGGTAGATTT+GGG - chr1_4:70413135-70413154 Msa0182000:intron 25.0%
! TTTGACAGAATTATCAATCT+TGG + chr1_4:70413320-70413339 None:intergenic 25.0%
!!! TTTTGTAGTGTGTTTTAACA+TGG + chr1_4:70413523-70413542 None:intergenic 25.0%
!! ATTAATTTGACACACTAGTA+TGG - chr1_4:70413558-70413577 Msa0182000:intron 25.0%
! TACACATATAGTACATTGTA+GGG + chr1_4:70413716-70413735 None:intergenic 25.0%
! TGATATGGAAAATCAAGAAT+AGG - chr1_4:70413790-70413809 Msa0182000:CDS 25.0%
! GATATGGAAAATCAAGAATA+GGG - chr1_4:70413791-70413810 Msa0182000:CDS 25.0%
! TATCTCTTAAACCTTTGAAT+CGG + chr1_4:70413825-70413844 None:intergenic 25.0%
! AGAGATACAAAAGAATAGTT+TGG - chr1_4:70413838-70413857 Msa0182000:CDS 25.0%
! ATAGATAGCTAACATCTATT+AGG + chr1_4:70413944-70413963 None:intergenic 25.0%
!!! TTTTATTTGTGTGTAGCTTA+TGG - chr1_4:70413988-70414007 Msa0182000:CDS 25.0%
! GATTGTGGGAAATAATAAAA+TGG - chr1_4:70414120-70414139 Msa0182000:CDS 25.0%
!! AATCAAAATAGTTAGTCTCA+AGG - chr1_4:70414165-70414184 Msa0182000:CDS 25.0%
!! ATCAAAATAGTTAGTCTCAA+GGG - chr1_4:70414166-70414185 Msa0182000:CDS 25.0%
!! AATGTCTTTTGCTCATTTTA+TGG - chr1_4:70414247-70414266 Msa0182000:five_prime_UTR 25.0%
! TACATTGTATCTAAACTACA+TGG + chr1_4:70414300-70414319 None:intergenic 25.0%
! ATGTAGTTTAGATACAATGT+AGG - chr1_4:70414299-70414318 Msa0182000:five_prime_UTR 25.0%
! TGAAATTGGGATTGTGATTT+TGG + chr1_4:70409623-70409642 None:intergenic 30.0%
TCTTAGATCTATTCTATCCA+TGG - chr1_4:70409654-70409673 Msa0182000:three_prime_UTR 30.0%
AAGGAATTGAAAACGTTGAT+GGG - chr1_4:70410019-70410038 Msa0182000:intron 30.0%
GTCTGATATGTTATGATACA+CGG - chr1_4:70410245-70410264 Msa0182000:intron 30.0%
! ATTTAAACTTTGTTGTCGGT+AGG - chr1_4:70410700-70410719 Msa0182000:intron 30.0%
! TAGGATTTAAAGTAGGGTTA+GGG - chr1_4:70410719-70410738 Msa0182000:intron 30.0%
GAGATTGCTGTCAATTAATT+TGG - chr1_4:70410761-70410780 Msa0182000:intron 30.0%
! TTTGGCAGTTTTCGATTTAA+GGG - chr1_4:70410844-70410863 Msa0182000:intron 30.0%
!! AGGATTTCAATAATGGACAT+TGG + chr1_4:70411107-70411126 None:intergenic 30.0%
AAAACTAATTGCACAGTCAA+AGG + chr1_4:70411170-70411189 None:intergenic 30.0%
!!! TGTGCAATTAGTTTTTACGT+GGG - chr1_4:70411175-70411194 Msa0182000:intron 30.0%
!!! TTTTAGGACTGAATTCTATG+AGG + chr1_4:70411216-70411235 None:intergenic 30.0%
ATGTGTTAGGAGAACAAAAA+AGG + chr1_4:70411271-70411290 None:intergenic 30.0%
TATTATCTGTTAGATGTCAG+GGG + chr1_4:70411428-70411447 None:intergenic 30.0%
AACAGATAATATTCTTGTGC+AGG - chr1_4:70411437-70411456 Msa0182000:intron 30.0%
!!! TATTGTTTGTTGGCTTGTTT+TGG - chr1_4:70411510-70411529 Msa0182000:intron 30.0%
TACTGATGAATATGTTGTCT+TGG - chr1_4:70411628-70411647 Msa0182000:intron 30.0%
! AGTTTTCGTTCTTAAATGTG+AGG - chr1_4:70411681-70411700 Msa0182000:intron 30.0%
! TTTTACTTCCAATATGCCAT+TGG - chr1_4:70411720-70411739 Msa0182000:intron 30.0%
GAGGAATTTATGTTTCTCAA+TGG + chr1_4:70411970-70411989 None:intergenic 30.0%
!! TCTCCATTTCTTTTAAGTGT+TGG + chr1_4:70412337-70412356 None:intergenic 30.0%
ATTGTTTAGAGGAAGCAAAT+AGG + chr1_4:70412980-70412999 None:intergenic 30.0%
AAGAAATCGCAATTGTTTAG+AGG + chr1_4:70412991-70413010 None:intergenic 30.0%
!!! TTTCTTTTTTTAGTAGCCAG+CGG - chr1_4:70413005-70413024 Msa0182000:intron 30.0%
TAGGTATAAAGGTAGATTTG+GGG - chr1_4:70413136-70413155 Msa0182000:intron 30.0%
ATTAGCAAATTGCTCATGTA+GGG + chr1_4:70413265-70413284 None:intergenic 30.0%
GATATCATCACAGAACATTA+TGG - chr1_4:70413420-70413439 Msa0182000:intron 30.0%
GTACACATATAGTACATTGT+AGG + chr1_4:70413717-70413736 None:intergenic 30.0%
!! GCACATGTTTTATTAGTTGA+AGG - chr1_4:70413756-70413775 Msa0182000:CDS 30.0%
AAGGTTACTTGCATATGATA+TGG - chr1_4:70413775-70413794 Msa0182000:CDS 30.0%
AACAGCAAACAAACTTCATA+AGG + chr1_4:70413898-70413917 None:intergenic 30.0%
TGTTAGCTATCTATAGTGAT+TGG - chr1_4:70413950-70413969 Msa0182000:CDS 30.0%
AAGCTACACACAAATAAAAC+AGG + chr1_4:70413987-70414006 None:intergenic 30.0%
GGTTAATGATAAGAGATAGA+AGG - chr1_4:70414196-70414215 Msa0182000:exon 30.0%
ATTTCTTATGTACTCCATTC+AGG + chr1_4:70414230-70414249 None:intergenic 30.0%
TAAAAGCAGAATTGTGAAGT+TGG - chr1_4:70414273-70414292 Msa0182000:five_prime_UTR 30.0%
AAAAACAGAATCGAGACAAG+TGG - chr1_4:70409514-70409533 Msa0182000:three_prime_UTR 35.0%
CAAGGAATTGAAAACGTTGA+TGG - chr1_4:70410018-70410037 Msa0182000:intron 35.0%
! AATTGAAAACGTTGATGGGT+CGG - chr1_4:70410023-70410042 Msa0182000:intron 35.0%
TTATCCAATTGCTCCATAAC+AGG + chr1_4:70410135-70410154 None:intergenic 35.0%
!!! GTGCTTTTGTTTTTGTGATG+TGG - chr1_4:70410405-70410424 Msa0182000:intron 35.0%
! GTGATTTTAGGCTTATCAAG+TGG - chr1_4:70410454-70410473 Msa0182000:intron 35.0%
TTAGGCTTATCAAGTGGAAT+TGG - chr1_4:70410460-70410479 Msa0182000:intron 35.0%
!! GGAAAATGACAAGTTGATGA+AGG - chr1_4:70410508-70410527 Msa0182000:intron 35.0%
!! TGACAAGTTGATGAAGGAAA+AGG - chr1_4:70410514-70410533 Msa0182000:intron 35.0%
! CAAAGACGGTTTTACCATTT+CGG + chr1_4:70410643-70410662 None:intergenic 35.0%
ACCATCATCAATTCCAAAGA+CGG + chr1_4:70410657-70410676 None:intergenic 35.0%
! TTGTCGGTAGGATTTAAAGT+AGG - chr1_4:70410712-70410731 Msa0182000:intron 35.0%
! TGTCGGTAGGATTTAAAGTA+GGG - chr1_4:70410713-70410732 Msa0182000:intron 35.0%
! GTAGGATTTAAAGTAGGGTT+AGG - chr1_4:70410718-70410737 Msa0182000:intron 35.0%
! TGATGATTTTTCACGACAGA+GGG - chr1_4:70410812-70410831 Msa0182000:intron 35.0%
! GTTTGGCAGTTTTCGATTTA+AGG - chr1_4:70410843-70410862 Msa0182000:intron 35.0%
TACAAGGCAAACATTCTTTG+TGG - chr1_4:70410991-70411010 Msa0182000:intron 35.0%
AACCATTCGACTCTGATTAA+GGG - chr1_4:70411029-70411048 Msa0182000:intron 35.0%
!!! CTGTGCAATTAGTTTTTACG+TGG - chr1_4:70411174-70411193 Msa0182000:intron 35.0%
TACGTGGGTAATTTCCATAA+CGG - chr1_4:70411190-70411209 Msa0182000:intron 35.0%
AGAACAAAAAAGGAACTTCG+TGG + chr1_4:70411261-70411280 None:intergenic 35.0%
ATTATCTGTTAGATGTCAGG+GGG + chr1_4:70411427-70411446 None:intergenic 35.0%
CTTCAGCTATGGTATCAAAT+GGG + chr1_4:70411592-70411611 None:intergenic 35.0%
TCTTCAGCTATGGTATCAAA+TGG + chr1_4:70411593-70411612 None:intergenic 35.0%
AGAAGAAACCAATGGCATAT+TGG + chr1_4:70411731-70411750 None:intergenic 35.0%
CTTGATGTAGAAGAAACCAA+TGG + chr1_4:70411739-70411758 None:intergenic 35.0%
GTCTTATAATTAGAGGCAGA+GGG + chr1_4:70411852-70411871 None:intergenic 35.0%
! GAAAGGGGTCTTATAATTAG+AGG + chr1_4:70411859-70411878 None:intergenic 35.0%
GGACAATAAAAAGTGGAAAG+GGG + chr1_4:70411874-70411893 None:intergenic 35.0%
GGGACAATAAAAAGTGGAAA+GGG + chr1_4:70411875-70411894 None:intergenic 35.0%
AGGGACAATAAAAAGTGGAA+AGG + chr1_4:70411876-70411895 None:intergenic 35.0%
! TTCTCAATGGTGCTTTAAAC+AGG + chr1_4:70411957-70411976 None:intergenic 35.0%
GGGTATTAGAAAAGTAGTTG+TGG + chr1_4:70412080-70412099 None:intergenic 35.0%
! GTTGGAGAGTCTTATGATAA+GGG - chr1_4:70412109-70412128 Msa0182000:intron 35.0%
ATGCAGCAACATATGTATAG+AGG - chr1_4:70412450-70412469 Msa0182000:intron 35.0%
TGCAGCAACATATGTATAGA+GGG - chr1_4:70412451-70412470 Msa0182000:intron 35.0%
TCAGGATATGAGTTACATCT+TGG + chr1_4:70412488-70412507 None:intergenic 35.0%
TTGTTGGACTGAAATCATTC+AGG + chr1_4:70412506-70412525 None:intergenic 35.0%
!!! CCTAATTGACGGTTTTTTGT+TGG + chr1_4:70412522-70412541 None:intergenic 35.0%
CCAACAAAAAACCGTCAATT+AGG - chr1_4:70412519-70412538 Msa0182000:intron 35.0%
AATCTAGTGCAAGAGATAAC+CGG + chr1_4:70412673-70412692 None:intergenic 35.0%
AATTAGTATGCTTGGGAAGA+GGG - chr1_4:70412780-70412799 Msa0182000:intron 35.0%
! CTTTTGTCTTGCTGCATAAA+TGG + chr1_4:70412840-70412859 None:intergenic 35.0%
ATGCAGCAAGACAAAAGTTA+TGG - chr1_4:70412843-70412862 Msa0182000:intron 35.0%
TGCAGCAAGACAAAAGTTAT+GGG - chr1_4:70412844-70412863 Msa0182000:intron 35.0%
! TTGGTGGACAGAAATCATTA+AGG - chr1_4:70412882-70412901 Msa0182000:intron 35.0%
!!! CTCATTTTGGGGTTTAAGAT+TGG + chr1_4:70413105-70413124 None:intergenic 35.0%
CATTAGCAAATTGCTCATGT+AGG + chr1_4:70413266-70413285 None:intergenic 35.0%
!! AGCAATTTGCTAATGTGCTA+TGG - chr1_4:70413271-70413290 Msa0182000:intron 35.0%
!! GCAATTTGCTAATGTGCTAT+GGG - chr1_4:70413272-70413291 Msa0182000:intron 35.0%
GAGAGACTACAGAAAACTAT+AGG - chr1_4:70413354-70413373 Msa0182000:CDS 35.0%
!!! GGGAAATTTTACCGATTCAA+AGG - chr1_4:70413811-70413830 Msa0182000:CDS 35.0%
ATAGCTAACATCTATTAGGC+TGG + chr1_4:70413940-70413959 None:intergenic 35.0%
AAATATGATCTACCACTGCA+AGG + chr1_4:70414074-70414093 None:intergenic 35.0%
AAGATGTGAACTGAAGATTG+TGG - chr1_4:70414105-70414124 Msa0182000:CDS 35.0%
AGATGTGAACTGAAGATTGT+GGG - chr1_4:70414106-70414125 Msa0182000:CDS 35.0%
GATTTGATCGTCGAGGAAAT+TGG + chr1_4:70409749-70409768 None:intergenic 40.0%
! GAGGATTTTCTTGTGAAAGC+TGG - chr1_4:70409895-70409914 Msa0182000:intron 40.0%
! TTTTCTTGTGAAAGCTGGTG+CGG - chr1_4:70409900-70409919 Msa0182000:intron 40.0%
GAAGATGACGATTCCGTTAT+CGG - chr1_4:70409951-70409970 Msa0182000:intron 40.0%
!!! TGGTAGTGGTATGTTTTCGT+TGG - chr1_4:70409984-70410003 Msa0182000:intron 40.0%
!! TCGTTGGATTCGAGTTTTCA+AGG - chr1_4:70410000-70410019 Msa0182000:intron 40.0%
AGAATAGAGAATCTGCTGCT+AGG - chr1_4:70410187-70410206 Msa0182000:intron 40.0%
ATGTTATGATACACGGACAC+CGG - chr1_4:70410252-70410271 Msa0182000:intron 40.0%
CAAATGTGTCAGTGTTGTGT+TGG - chr1_4:70410319-70410338 Msa0182000:intron 40.0%
GTTGGACTAAAAACACGTGT+CGG - chr1_4:70410337-70410356 Msa0182000:intron 40.0%
TAAAAACACGTGTCGGATAC+AGG - chr1_4:70410344-70410363 Msa0182000:intron 40.0%
CGAAATGGTAAAACCGTCTT+TGG - chr1_4:70410641-70410660 Msa0182000:intron 40.0%
!! ACCGTCTTTGGAATTGATGA+TGG - chr1_4:70410653-70410672 Msa0182000:intron 40.0%
!! TTGGAATTGATGATGGTCTG+TGG - chr1_4:70410660-70410679 Msa0182000:intron 40.0%
! GTGATGATTTTTCACGACAG+AGG - chr1_4:70410811-70410830 Msa0182000:intron 40.0%
TTGCTGTGGTTAATGCTACA+AGG - chr1_4:70410975-70410994 Msa0182000:intron 40.0%
GAACCATTCGACTCTGATTA+AGG - chr1_4:70411028-70411047 Msa0182000:intron 40.0%
! GTTGTGCTTGTTAACAGAAG+TGG - chr1_4:70411077-70411096 Msa0182000:intron 40.0%
TGAATTCTATGAGGCCGTTA+TGG + chr1_4:70411207-70411226 None:intergenic 40.0%
!! AATGTTTCTTGGAGCACTGT+TGG - chr1_4:70411319-70411338 Msa0182000:intron 40.0%
CTGAAAATTCAAAGGGTTGC+AGG + chr1_4:70411376-70411395 None:intergenic 40.0%
!!! TTGGCTTGTTTTGGACCTTT+TGG - chr1_4:70411519-70411538 Msa0182000:intron 40.0%
GCTATGGTATCAAATGGGAA+AGG + chr1_4:70411587-70411606 None:intergenic 40.0%
TAGCAAGCAATCTTCAGCTA+TGG + chr1_4:70411603-70411622 None:intergenic 40.0%
! GGTCTTATAATTAGAGGCAG+AGG + chr1_4:70411853-70411872 None:intergenic 40.0%
CTAATACCCTTGAACTTCGT+TGG - chr1_4:70412091-70412110 Msa0182000:intron 40.0%
! CGTTGGAGAGTCTTATGATA+AGG - chr1_4:70412108-70412127 Msa0182000:intron 40.0%
! GAGAGTCTTATGATAAGGGA+CGG - chr1_4:70412113-70412132 Msa0182000:intron 40.0%
AATCACTAGTTGACGTGTAG+TGG - chr1_4:70412393-70412412 Msa0182000:CDS 40.0%
AATCACGGAAAAACCCACTT+TGG - chr1_4:70412627-70412646 Msa0182000:intron 40.0%
GAGATAACCGGTTATCATCT+CGG + chr1_4:70412661-70412680 None:intergenic 40.0%
CTTCACTAGTAGGCAATGAA+AGG + chr1_4:70412746-70412765 None:intergenic 40.0%
TTCATTGCCTACTAGTGAAG+AGG - chr1_4:70412746-70412765 Msa0182000:intron 40.0%
TCATTGCCTACTAGTGAAGA+GGG - chr1_4:70412747-70412766 Msa0182000:intron 40.0%
GTAATACCCTCTTCACTAGT+AGG + chr1_4:70412756-70412775 None:intergenic 40.0%
CAATTAGTATGCTTGGGAAG+AGG - chr1_4:70412779-70412798 Msa0182000:intron 40.0%
CAAACCACCAAAGTTCATTC+AGG - chr1_4:70412811-70412830 Msa0182000:intron 40.0%
ATGGATGCCTGAATGAACTT+TGG + chr1_4:70412821-70412840 None:intergenic 40.0%
TGACACTATAGCGTCACTAT+TGG - chr1_4:70413064-70413083 Msa0182000:intron 40.0%
GACACTATAGCGTCACTATT+GGG - chr1_4:70413065-70413084 Msa0182000:intron 40.0%
!!! GTGGTATTGGCTCTTTTACA+TGG + chr1_4:70413457-70413476 None:intergenic 40.0%
! CAAAATCTTTTCCCACTAGG+TGG + chr1_4:70413476-70413495 None:intergenic 40.0%
! CACCTAGTGGGAAAAGATTT+TGG - chr1_4:70413474-70413493 Msa0182000:intron 40.0%
! CACCAAAATCTTTTCCCACT+AGG + chr1_4:70413479-70413498 None:intergenic 40.0%
! CTAGTGGGAAAAGATTTTGG+TGG - chr1_4:70413477-70413496 Msa0182000:intron 40.0%
GGAAAAAGTGATTCCTGTTG+TGG - chr1_4:70414009-70414028 Msa0182000:CDS 40.0%
CAGTGGTAGATCATATTTGC+TGG - chr1_4:70414076-70414095 Msa0182000:CDS 40.0%
! TGGTAGATCATATTTGCTGG+TGG - chr1_4:70414079-70414098 Msa0182000:CDS 40.0%
! GTTAGTCTCAAGGGTAATTG+TGG - chr1_4:70414175-70414194 Msa0182000:CDS 40.0%
AGAAGGAATCAGTACCTGAA+TGG - chr1_4:70414213-70414232 Msa0182000:five_prime_UTR 40.0%
TAGATACAATGTAGGCATCC+TGG - chr1_4:70414307-70414326 Msa0182000:five_prime_UTR 40.0%
GCGAGTGTAAAGAGGTAGTT+GGG - chr1_4:70409536-70409555 Msa0182000:three_prime_UTR 45.0%
TTCTGACAGTGTAGAAGCTG+CGG + chr1_4:70409571-70409590 None:intergenic 45.0%
AGATGGAGAAGAAGGTGGAT+CGG + chr1_4:70409704-70409723 None:intergenic 45.0%
TTAGGAGATGGAGAAGAAGG+TGG + chr1_4:70409709-70409728 None:intergenic 45.0%
GGTTTAGGAGATGGAGAAGA+AGG + chr1_4:70409712-70409731 None:intergenic 45.0%
GTGAAGTGAGGTTTAGGAGA+TGG + chr1_4:70409721-70409740 None:intergenic 45.0%
TTGATCGTCGAGGAAATTGG+CGG + chr1_4:70409746-70409765 None:intergenic 45.0%
! TTCCGATGAGATGATGACGT+TGG - chr1_4:70409873-70409892 Msa0182000:intron 45.0%
CTCCAACGTCATCATCTCAT+CGG + chr1_4:70409878-70409897 None:intergenic 45.0%
ATAGGGTTTGGGAATGGGAA+TGG - chr1_4:70410048-70410067 Msa0182000:intron 45.0%
TTTGGGAATGGGAATGGCAA+TGG - chr1_4:70410054-70410073 Msa0182000:intron 45.0%
TTGGGAATGGGAATGGCAAT+GGG - chr1_4:70410055-70410074 Msa0182000:intron 45.0%
AATGGGAATGGCAATGGGAA+TGG - chr1_4:70410060-70410079 Msa0182000:intron 45.0%
ATGGGAATGGCAATGGGAAT+GGG - chr1_4:70410061-70410080 Msa0182000:intron 45.0%
AATGGCAATGGGAATGGGAA+TGG - chr1_4:70410066-70410085 Msa0182000:intron 45.0%
ATGGCAATGGGAATGGGAAT+GGG - chr1_4:70410067-70410086 Msa0182000:intron 45.0%
AATGGGGTGGAAATGGTTGA+AGG - chr1_4:70410084-70410103 Msa0182000:intron 45.0%
AGAATCTGCTGCTAGGTCTA+GGG - chr1_4:70410194-70410213 Msa0182000:intron 45.0%
TCAAGTGGAATTGGAGTCCT+TGG - chr1_4:70410469-70410488 Msa0182000:intron 45.0%
GACAGAGGGACAAAGTTGTT+TGG - chr1_4:70410826-70410845 Msa0182000:intron 45.0%
CAAGCAGCTGATGGAAAATG+TGG + chr1_4:70410951-70410970 None:intergenic 45.0%
AGCAAAAAGCAAGCAGCTGA+TGG + chr1_4:70410960-70410979 None:intergenic 45.0%
GTCCCTTAATCAGAGTCGAA+TGG + chr1_4:70411034-70411053 None:intergenic 45.0%
CAAGCATGGTAGCATGTGTT+AGG + chr1_4:70411284-70411303 None:intergenic 45.0%
ATATTCTTGTGCAGGCTGAG+AGG - chr1_4:70411445-70411464 Msa0182000:intron 45.0%
GAAAAAGGAGAGGTTCAAGC+AGG - chr1_4:70411467-70411486 Msa0182000:intron 45.0%
GACTCTCCAACGAAGTTCAA+GGG + chr1_4:70412100-70412119 None:intergenic 45.0%
AGACTCTCCAACGAAGTTCA+AGG + chr1_4:70412101-70412120 None:intergenic 45.0%
AAACCGTCAATTAGGTGCAC+TGG - chr1_4:70412527-70412546 Msa0182000:intron 45.0%
TGACCAGTGCACCTAATTGA+CGG + chr1_4:70412533-70412552 None:intergenic 45.0%
ATAACCGGTTATCATCTCGG+TGG + chr1_4:70412658-70412677 None:intergenic 45.0%
ACTTGTGCAGTAGAGACATC+TGG + chr1_4:70412711-70412730 None:intergenic 45.0%
GATGCCTGAATGAACTTTGG+TGG + chr1_4:70412818-70412837 None:intergenic 45.0%
!!! TGGGCTGCTCGTTAGTTTTT+TGG - chr1_4:70412863-70412882 Msa0182000:intron 45.0%
!!! GCTGCTCGTTAGTTTTTTGG+TGG - chr1_4:70412866-70412885 Msa0182000:intron 45.0%
!!! CTTTTTTTAGTAGCCAGCGG+TGG - chr1_4:70413008-70413027 Msa0182000:intron 45.0%
! TCACTATTGGGTTGCAAGAG+TGG - chr1_4:70413077-70413096 Msa0182000:intron 45.0%
TTGCTAATGTGCTATGGGAC+TGG - chr1_4:70413277-70413296 Msa0182000:intron 45.0%
AAAGAGCCAATACCACCTAG+TGG - chr1_4:70413461-70413480 Msa0182000:intron 45.0%
AAGAGCCAATACCACCTAGT+GGG - chr1_4:70413462-70413481 Msa0182000:intron 45.0%
! CTTTTCCCACTAGGTGGTAT+TGG + chr1_4:70413470-70413489 None:intergenic 45.0%
GACAAGTGGCGAGTGTAAAG+AGG - chr1_4:70409528-70409547 Msa0182000:three_prime_UTR 50.0%
GGCGAGTGTAAAGAGGTAGT+TGG - chr1_4:70409535-70409554 Msa0182000:three_prime_UTR 50.0%
CATGAGCTTGGAAGAAGCCA+TGG + chr1_4:70409674-70409693 None:intergenic 50.0%
! ATCGGAAGAAGGCATGAGCT+TGG + chr1_4:70409686-70409705 None:intergenic 50.0%
GAAGAAGGTGGATCGGAAGA+AGG + chr1_4:70409697-70409716 None:intergenic 50.0%
AAATTGGCGGTGGTGAAGTG+AGG + chr1_4:70409733-70409752 None:intergenic 50.0%
TTCTTTACACTCCCTGTCGC+CGG + chr1_4:70409848-70409867 None:intergenic 50.0%
! CGATGAGATGATGACGTTGG+AGG - chr1_4:70409876-70409895 Msa0182000:intron 50.0%
! AACGTTGATGGGTCGGTGAT+AGG - chr1_4:70410030-70410049 Msa0182000:intron 50.0%
! ACGTTGATGGGTCGGTGATA+GGG - chr1_4:70410031-70410050 Msa0182000:intron 50.0%
ATGGGTCGGTGATAGGGTTT+GGG - chr1_4:70410037-70410056 Msa0182000:intron 50.0%
TCGGTGATAGGGTTTGGGAA+TGG - chr1_4:70410042-70410061 Msa0182000:intron 50.0%
CGGTGATAGGGTTTGGGAAT+GGG - chr1_4:70410043-70410062 Msa0182000:intron 50.0%
TGGCAATGGGAATGGGAATG+GGG - chr1_4:70410068-70410087 Msa0182000:intron 50.0%
GAATGGGAATGGGGTGGAAA+TGG - chr1_4:70410077-70410096 Msa0182000:intron 50.0%
GGGTGGAAATGGTTGAAGGT+GGG - chr1_4:70410088-70410107 Msa0182000:intron 50.0%
GGTGGAAATGGTTGAAGGTG+GGG - chr1_4:70410089-70410108 Msa0182000:intron 50.0%
GTGGAAATGGTTGAAGGTGG+GGG - chr1_4:70410090-70410109 Msa0182000:intron 50.0%
TGGAAATGGTTGAAGGTGGG+GGG - chr1_4:70410091-70410110 Msa0182000:intron 50.0%
ACGGCCTGTTATGGAGCAAT+TGG - chr1_4:70410128-70410147 Msa0182000:intron 50.0%
GAGAATCTGCTGCTAGGTCT+AGG - chr1_4:70410193-70410212 Msa0182000:intron 50.0%
ACTCGTGTCAGTGTCATGTC+CGG + chr1_4:70410274-70410293 None:intergenic 50.0%
AGTGGAATTGGAGTCCTTGG+CGG - chr1_4:70410472-70410491 Msa0182000:intron 50.0%
!!! CAGCTGCTTGCTTTTTGCTG+TGG - chr1_4:70410961-70410980 Msa0182000:intron 50.0%
TGTGCAGGCTGAGAGGAAAA+AGG - chr1_4:70411452-70411471 Msa0182000:intron 50.0%
AGGCTGAGAGGAAAAAGGAG+AGG - chr1_4:70411457-70411476 Msa0182000:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_4:70411987-70412006 None:intergenic 50.0%
! GTCAATTAGGTGCACTGGTC+AGG - chr1_4:70412532-70412551 Msa0182000:intron 50.0%
TGCAGACCGCATCACATGAT+GGG - chr1_4:70412564-70412583 Msa0182000:intron 50.0%
! ATCACATGATGGGGTCCACA+GGG - chr1_4:70412574-70412593 Msa0182000:intron 50.0%
CACACCACCGAGATGATAAC+CGG - chr1_4:70412651-70412670 Msa0182000:intron 50.0%
CTAATGTGCTATGGGACTGG+TGG - chr1_4:70413280-70413299 Msa0182000:intron 50.0%
CACATTTGCAGTCTGCACAG+GGG + chr1_4:70414338-70414357 None:intergenic 50.0%
GCACATTTGCAGTCTGCACA+GGG + chr1_4:70414339-70414358 None:intergenic 50.0%
GCGGTGGTGAAGTGAGGTTT+AGG + chr1_4:70409727-70409746 None:intergenic 55.0%
ATCGTCGAGGAAATTGGCGG+TGG + chr1_4:70409743-70409762 None:intergenic 55.0%
CGAGGGAGATTTGATCGTCG+AGG + chr1_4:70409756-70409775 None:intergenic 55.0%
TGTGAAAGCTGGTGCGGTTG+AGG - chr1_4:70409906-70409925 Msa0182000:intron 55.0%
CCACTGAGCGTCTCCGATAA+CGG + chr1_4:70409967-70409986 None:intergenic 55.0%
GATGGGTCGGTGATAGGGTT+TGG - chr1_4:70410036-70410055 Msa0182000:intron 55.0%
CAATGGGAATGGGAATGGGG+TGG - chr1_4:70410071-70410090 Msa0182000:intron 55.0%
GGGGTGGAAATGGTTGAAGG+TGG - chr1_4:70410087-70410106 Msa0182000:intron 55.0%
AAATGGTTGAAGGTGGGGGG+AGG - chr1_4:70410094-70410113 Msa0182000:intron 55.0%
AATGGTTGAAGGTGGGGGGA+GGG - chr1_4:70410095-70410114 Msa0182000:intron 55.0%
GAAGAGAGGACGGCCTGTTA+TGG - chr1_4:70410119-70410138 Msa0182000:intron 55.0%
AAGCTGCTCAGCAGAGACAG+AGG - chr1_4:70410154-70410173 Msa0182000:intron 55.0%
TAGGTCTAGGGAACGCAAGC+AGG - chr1_4:70410206-70410225 Msa0182000:intron 55.0%
ACGTGTAGTGGCAGCAACCA+GGG - chr1_4:70412405-70412424 Msa0182000:intron 55.0%
CTGCAGACCGCATCACATGA+TGG - chr1_4:70412563-70412582 Msa0182000:intron 55.0%
GCAGACCGCATCACATGATG+GGG - chr1_4:70412565-70412584 Msa0182000:intron 55.0%
GTGGACCCCATCATGTGATG+CGG + chr1_4:70412573-70412592 None:intergenic 55.0%
! CATCACATGATGGGGTCCAC+AGG - chr1_4:70412573-70412592 Msa0182000:intron 55.0%
! TCACATGATGGGGTCCACAG+GGG - chr1_4:70412575-70412594 Msa0182000:intron 55.0%
CGGTTATCATCTCGGTGGTG+TGG + chr1_4:70412653-70412672 None:intergenic 55.0%
TTCCTGTTGTGGAGCAGCGA+AGG - chr1_4:70414020-70414039 Msa0182000:CDS 55.0%
ACTGCAAGGAGCGAACCCTA+CGG + chr1_4:70414060-70414079 None:intergenic 55.0%
ATCGTCGACGGTTCGAGGAG+TGG + chr1_4:70409791-70409810 None:intergenic 60.0%
CAGACATCGTCGACGGTTCG+AGG + chr1_4:70409796-70409815 None:intergenic 60.0%
CTCGAACCGTCGACGATGTC+TGG - chr1_4:70409794-70409813 Msa0182000:CDS 60.0%
CTCTCGCCAGACATCGTCGA+CGG + chr1_4:70409803-70409822 None:intergenic 60.0%
CGATGTGATCTCCGGCGACA+GGG - chr1_4:70409834-70409853 Msa0182000:CDS 60.0%
AGCTGGTGCGGTTGAGGATG+AGG - chr1_4:70409912-70409931 Msa0182000:intron 60.0%
TGGTGCGGTTGAGGATGAGG+AGG - chr1_4:70409915-70409934 Msa0182000:intron 60.0%
TGCGGTTGAGGATGAGGAGG+AGG - chr1_4:70409918-70409937 Msa0182000:intron 60.0%
GCGGTTGAGGATGAGGAGGA+GGG - chr1_4:70409919-70409938 Msa0182000:intron 60.0%
TGAGGATGAGGAGGAGGGTG+AGG - chr1_4:70409924-70409943 Msa0182000:intron 60.0%
CCGTTATCGGAGACGCTCAG+TGG - chr1_4:70409964-70409983 Msa0182000:intron 60.0%
TCGGAGACGCTCAGTGGTAG+TGG - chr1_4:70409970-70409989 Msa0182000:intron 60.0%
ATGGTTGAAGGTGGGGGGAG+GGG - chr1_4:70410096-70410115 Msa0182000:intron 60.0%
GTCCTTGGCGGTGAAGCTAG+AGG - chr1_4:70410484-70410503 Msa0182000:intron 60.0%
! CTCCTCTAGCTTCACCGCCA+AGG + chr1_4:70410489-70410508 None:intergenic 60.0%
CTTGGCGGTGAAGCTAGAGG+AGG - chr1_4:70410487-70410506 Msa0182000:intron 60.0%
GACGTGTAGTGGCAGCAACC+AGG - chr1_4:70412404-70412423 Msa0182000:intron 60.0%
ATTGCAGGCAGATGCCCCTG+TGG + chr1_4:70412592-70412611 None:intergenic 60.0%
CTCGGTGGTGTGGCCAAAGT+GGG + chr1_4:70412643-70412662 None:intergenic 60.0%
TCTCGGTGGTGTGGCCAAAG+TGG + chr1_4:70412644-70412663 None:intergenic 60.0%
ACCCTACGGAGTAACCGTGG+CGG + chr1_4:70414046-70414065 None:intergenic 60.0%
CGAACCCTACGGAGTAACCG+TGG + chr1_4:70414049-70414068 None:intergenic 60.0%
GTAGGGTTCGCTCCTTGCAG+TGG - chr1_4:70414059-70414078 Msa0182000:CDS 60.0%
GACGGTTCGAGGAGTGGCGA+CGG + chr1_4:70409785-70409804 None:intergenic 65.0%
GTCTGGCGAGAGATCGTCGC+CGG - chr1_4:70409811-70409830 Msa0182000:CDS 65.0%
GTCGCCGGCGATGTGATCTC+CGG - chr1_4:70409826-70409845 Msa0182000:CDS 65.0%
GTCGCCGGAGATCACATCGC+CGG + chr1_4:70409833-70409852 None:intergenic 65.0%
GCGATGTGATCTCCGGCGAC+AGG - chr1_4:70409833-70409852 Msa0182000:CDS 65.0%
TGGTTGAAGGTGGGGGGAGG+GGG - chr1_4:70410097-70410116 Msa0182000:intron 65.0%
AGTAGCCAGCGGTGGCGCAA+CGG - chr1_4:70413016-70413035 Msa0182000:intron 65.0%
GGCCTTCGCTGCTCCACAAC+AGG + chr1_4:70414025-70414044 None:intergenic 65.0%
GCCGCCACGGTTACTCCGTA+GGG - chr1_4:70414042-70414061 Msa0182000:CDS 65.0%
GTCTGCACAGGGGTGAGACC+AGG + chr1_4:70414328-70414347 None:intergenic 65.0%
TCGAGGAGTGGCGACGGCGT+CGG + chr1_4:70409779-70409798 None:intergenic 70.0%
GGGGGAGGGGGAAGAGAGGA+CGG - chr1_4:70410109-70410128 Msa0182000:intron 70.0%
TGGAGCAGCGAAGGCCGCCA+CGG - chr1_4:70414029-70414048 Msa0182000:CDS 70.0%
GGCCGCCACGGTTACTCCGT+AGG - chr1_4:70414041-70414060 Msa0182000:CDS 70.0%
!! AGTGGCGACGGCGTCGGCGA+GGG + chr1_4:70409773-70409792 None:intergenic 75.0%
GGTGGGGGGAGGGGGAAGAG+AGG - chr1_4:70410105-70410124 Msa0182000:intron 75.0%
!!! GAGTGGCGACGGCGTCGGCG+AGG + chr1_4:70409774-70409793 None:intergenic 80.0%
! GGCAGCCGTTGCGCCACCGC+TGG + chr1_4:70413024-70413043 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70409513 70414358 70409513 ID=Msa0182000;Name=Msa0182000
chr1_4 mRNA 70409513 70414358 70409513 ID=Msa0182000-mRNA-1;Parent=Msa0182000;Name=Msa0182000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=160|1|1|1|1|1|4|274|245
chr1_4 exon 70409513 70409867 70409513 ID=Msa0182000-mRNA-1:exon:23504;Parent=Msa0182000-mRNA-1
chr1_4 exon 70412383 70412412 70412383 ID=Msa0182000-mRNA-1:exon:23503;Parent=Msa0182000-mRNA-1
chr1_4 exon 70413336 70413407 70413336 ID=Msa0182000-mRNA-1:exon:23502;Parent=Msa0182000-mRNA-1
chr1_4 exon 70413644 70414358 70413644 ID=Msa0182000-mRNA-1:exon:23501;Parent=Msa0182000-mRNA-1
chr1_4 five_prime_UTR 70414199 70414358 70414199 ID=Msa0182000-mRNA-1:five_prime_utr;Parent=Msa0182000-mRNA-1
chr1_4 CDS 70413644 70414198 70413644 ID=Msa0182000-mRNA-1:cds;Parent=Msa0182000-mRNA-1
chr1_4 CDS 70413336 70413407 70413336 ID=Msa0182000-mRNA-1:cds;Parent=Msa0182000-mRNA-1
chr1_4 CDS 70412383 70412412 70412383 ID=Msa0182000-mRNA-1:cds;Parent=Msa0182000-mRNA-1
chr1_4 CDS 70409787 70409867 70409787 ID=Msa0182000-mRNA-1:cds;Parent=Msa0182000-mRNA-1
chr1_4 three_prime_UTR 70409513 70409786 70409513 ID=Msa0182000-mRNA-1:three_prime_utr;Parent=Msa0182000-mRNA-1
Gene Sequence

>Msa0182000

ATGGCTTCTTCCAAGCTCATGCCTTCTTCCGATCCACCTTCTTCTCCATCTCCTAAACCTCACTTCACCACCGCCAATTTCCTCGACGATCAAATCTCCCTCGCCGACGCCGTCGCCACTCCTCGAACCGTCGACGATGTCTGGCGAGAGATCGTCGCCGGCGATGTGATCTCCGGCGACAGGGAGTGTAAAGAAGAGATTTCCGATGAGATGATGACGTTGGAGGATTTTCTTGTGAAAGCTGGTGCGGTTGAGGATGAGGAGGAGGGTGAGGATGTGAAGATGACGATTCCGTTATCGGAGACGCTCAGTGGTAGTGGTATGTTTTCGTTGGATTCGAGTTTTCAAGGAATTGAAAACGTTGATGGGTCGGTGATAGGGTTTGGGAATGGGAATGGCAATGGGAATGGGAATGGGGTGGAAATGGTTGAAGGTGGGGGGAGGGGGAAGAGAGGACGGCCTGTTATGGAGCAATTGGATAAAGCTGCTCAGCAGAGACAGAGGAGAATGATTAAGAATAGAGAATCTGCTGCTAGGTCTAGGGAACGCAAGCAGGCTTATCAAGTGGAATTGGAGTCCTTGGCGGTGAAGCTAGAGGAGGAAAATGACAAGTTGATGAAGGAAAAGGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAAAGTGATTCCTGTTGTGGAGCAGCGAAGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAG

Protein sequence

>Msa0182000

MASSKLMPSSDPPSSPSPKPHFTTANFLDDQISLADAVATPRTVDDVWREIVAGDVISGDRECKEEISDEMMTLEDFLVKAGAVEDEEEGEDVKMTIPLSETLSGSGMFSLDSSFQGIENVDGSVIGFGNGNGNGNGNGVEMVEGGGRGKRGRPVMEQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKERFKQLMEKVIPVVEQRRPPRLLRRVRSLQW*