Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182630 | XP_013470179.1 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 3.81e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182630 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182630 | G7ZZB8 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0182630 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182630 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa0182630 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa0182630 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa0182630 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa0182630 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa0182630 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa0182630 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa0182630 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa0182630 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182630 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa0182630 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa0182630 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa0182630 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa0182630 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0182630 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0182630 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | 1_4:-71350600 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | 1_4:+71351068 | Msa0182630:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | 1_4:+71351367 | Msa0182630:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | 1_4:-71350634 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | 1_4:-71351221 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | 1_4:+71351432 | Msa0182630:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | 1_4:-71351360 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | 1_4:+71351368 | Msa0182630:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | 1_4:-71351227 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | 1_4:+71351468 | Msa0182630:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | 1_4:-71350623 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | 1_4:-71351314 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | 1_4:-71351313 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | 1_4:+71351445 | Msa0182630:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | 1_4:-71350608 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | 1_4:-71350577 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | 1_4:-71350599 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | 1_4:+71351277 | Msa0182630:CDS |
| ATTGATGGGCAGACATCATC+AGG | 0.455052 | 1_4:+71351169 | Msa0182630:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | 1_4:+71351118 | Msa0182630:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | 1_4:+71351049 | Msa0182630:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | 1_4:-71351062 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | 1_4:-71351359 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | 1_4:-71350607 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | 1_4:-71350647 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | 1_4:-71350542 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | 1_4:+71351050 | Msa0182630:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | 1_4:+71351232 | Msa0182630:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | 1_4:+71351058 | Msa0182630:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | 1_4:-71350652 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | 1_4:+71350568 | Msa0182630:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | 1_4:+71351254 | Msa0182630:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | 1_4:-71351257 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | 1_4:+71351253 | Msa0182630:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | 1_4:+71351033 | Msa0182630:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | 1_4:+71351369 | Msa0182630:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | 1_4:+71351307 | Msa0182630:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | 1_4:-71351374 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | 1_4:-71350622 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | 1_4:-71350629 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | 1_4:+71350508 | None:intergenic |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | 1_4:+71351469 | Msa0182630:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | 1_4:-71351061 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | 1_4:+71351278 | Msa0182630:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | 1_4:-71350576 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | 1_4:+71350591 | Msa0182630:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | 1_4:+71350507 | None:intergenic |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | 1_4:+71351025 | Msa0182630:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | 1_4:+71351321 | Msa0182630:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | 1_4:-71350581 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | 1_4:+71350528 | Msa0182630:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | 1_4:+71351051 | Msa0182630:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | 1_4:-71350668 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | 1_4:+71351383 | Msa0182630:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | 1_4:+71351384 | Msa0182630:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | 1_4:+71350684 | Msa0182630:CDS |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | 1_4:+71350592 | Msa0182630:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | 1_4:-71351319 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | 1_4:+71351225 | Msa0182630:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | 1_4:-71350619 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | 1_4:+71351018 | Msa0182630:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | 1_4:+71351243 | Msa0182630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCTAACACTTAAATGA+TGG | + | chr1_4:71350728-71350747 | Msa0182630:intron | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | - | chr1_4:71350926-71350945 | None:intergenic | 20.0% |
| !! | ATAATCTAACACTTAAATGA+TGG | + | chr1_4:71350728-71350747 | Msa0182630:intron | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | - | chr1_4:71350926-71350945 | None:intergenic | 20.0% |
| !! | GTTTAATTTATGATCCGTAA+CGG | - | chr1_4:71350885-71350904 | None:intergenic | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | + | chr1_4:71351155-71351174 | Msa0182630:CDS | 25.0% |
| !! | GTTTAATTTATGATCCGTAA+CGG | - | chr1_4:71350885-71350904 | None:intergenic | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | + | chr1_4:71351155-71351174 | Msa0182630:CDS | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | - | chr1_4:71350625-71350644 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | - | chr1_4:71350676-71350695 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | - | chr1_4:71350685-71350704 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | + | chr1_4:71350684-71350703 | Msa0182630:CDS | 30.0% | |
| ! | TCTAACACTTAAATGATGGA+TGG | + | chr1_4:71350732-71350751 | Msa0182630:intron | 30.0% |
| ! | CAATTTAAAACCATGATGGA+TGG | - | chr1_4:71350776-71350795 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | + | chr1_4:71350776-71350795 | Msa0182630:intron | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr1_4:71350780-71350799 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | - | chr1_4:71350817-71350836 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | - | chr1_4:71350907-71350926 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | + | chr1_4:71351018-71351037 | Msa0182630:CDS | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | + | chr1_4:71351154-71351173 | Msa0182630:CDS | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | + | chr1_4:71351277-71351296 | Msa0182630:CDS | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | + | chr1_4:71351278-71351297 | Msa0182630:CDS | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | - | chr1_4:71351362-71351381 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | + | chr1_4:71351367-71351386 | Msa0182630:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | + | chr1_4:71351368-71351387 | Msa0182630:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | + | chr1_4:71351469-71351488 | Msa0182630:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | - | chr1_4:71350625-71350644 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | - | chr1_4:71350676-71350695 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | - | chr1_4:71350685-71350704 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | + | chr1_4:71350684-71350703 | Msa0182630:CDS | 30.0% | |
| ! | TCTAACACTTAAATGATGGA+TGG | + | chr1_4:71350732-71350751 | Msa0182630:intron | 30.0% |
| ! | CAATTTAAAACCATGATGGA+TGG | - | chr1_4:71350776-71350795 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | + | chr1_4:71350776-71350795 | Msa0182630:intron | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr1_4:71350780-71350799 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | - | chr1_4:71350817-71350836 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | - | chr1_4:71350907-71350926 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | + | chr1_4:71351018-71351037 | Msa0182630:CDS | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | + | chr1_4:71351154-71351173 | Msa0182630:CDS | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | + | chr1_4:71351277-71351296 | Msa0182630:CDS | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | + | chr1_4:71351278-71351297 | Msa0182630:CDS | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | - | chr1_4:71351362-71351381 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | + | chr1_4:71351367-71351386 | Msa0182630:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | + | chr1_4:71351368-71351387 | Msa0182630:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | + | chr1_4:71351469-71351488 | Msa0182630:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | - | chr1_4:71350545-71350564 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | - | chr1_4:71350626-71350645 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | + | chr1_4:71350624-71350643 | Msa0182630:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | + | chr1_4:71350763-71350782 | Msa0182630:intron | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | - | chr1_4:71351223-71351242 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | - | chr1_4:71351224-71351243 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | - | chr1_4:71351363-71351382 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | + | chr1_4:71351360-71351379 | Msa0182630:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | + | chr1_4:71351369-71351388 | Msa0182630:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | + | chr1_4:71351432-71351451 | Msa0182630:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | + | chr1_4:71351468-71351487 | Msa0182630:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | - | chr1_4:71351480-71351499 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | - | chr1_4:71350545-71350564 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | - | chr1_4:71350626-71350645 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | + | chr1_4:71350624-71350643 | Msa0182630:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | + | chr1_4:71350763-71350782 | Msa0182630:intron | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | - | chr1_4:71351223-71351242 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | - | chr1_4:71351224-71351243 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | - | chr1_4:71351363-71351382 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | + | chr1_4:71351360-71351379 | Msa0182630:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | + | chr1_4:71351369-71351388 | Msa0182630:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | + | chr1_4:71351432-71351451 | Msa0182630:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | + | chr1_4:71351468-71351487 | Msa0182630:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | - | chr1_4:71351480-71351499 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | - | chr1_4:71350632-71350651 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | - | chr1_4:71350671-71350690 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | + | chr1_4:71350851-71350870 | Msa0182630:intron | 40.0% |
| TATGATCCGTAACGGTATTG+CGG | - | chr1_4:71350877-71350896 | None:intergenic | 40.0% | |
| AGATTGGTGAATCCCACATA+TGG | + | chr1_4:71351049-71351068 | Msa0182630:CDS | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | + | chr1_4:71351050-71351069 | Msa0182630:CDS | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | + | chr1_4:71351051-71351070 | Msa0182630:CDS | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | + | chr1_4:71351080-71351099 | Msa0182630:CDS | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | - | chr1_4:71351222-71351241 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | + | chr1_4:71351225-71351244 | Msa0182630:CDS | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | + | chr1_4:71351254-71351273 | Msa0182630:CDS | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | - | chr1_4:71351260-71351279 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | + | chr1_4:71351383-71351402 | Msa0182630:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | + | chr1_4:71351384-71351403 | Msa0182630:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | + | chr1_4:71351445-71351464 | Msa0182630:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | - | chr1_4:71350632-71350651 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | - | chr1_4:71350671-71350690 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | + | chr1_4:71350851-71350870 | Msa0182630:intron | 40.0% |
| TATGATCCGTAACGGTATTG+CGG | - | chr1_4:71350877-71350896 | None:intergenic | 40.0% | |
| AGATTGGTGAATCCCACATA+TGG | + | chr1_4:71351049-71351068 | Msa0182630:CDS | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | + | chr1_4:71351050-71351069 | Msa0182630:CDS | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | + | chr1_4:71351051-71351070 | Msa0182630:CDS | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | + | chr1_4:71351080-71351099 | Msa0182630:CDS | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | - | chr1_4:71351222-71351241 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | + | chr1_4:71351225-71351244 | Msa0182630:CDS | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | + | chr1_4:71351254-71351273 | Msa0182630:CDS | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | - | chr1_4:71351260-71351279 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | + | chr1_4:71351383-71351402 | Msa0182630:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | + | chr1_4:71351384-71351403 | Msa0182630:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | + | chr1_4:71351445-71351464 | Msa0182630:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | - | chr1_4:71350622-71350641 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | + | chr1_4:71350633-71350652 | Msa0182630:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | - | chr1_4:71350637-71350656 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | - | chr1_4:71350705-71350724 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | + | chr1_4:71351169-71351188 | Msa0182630:CDS | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | - | chr1_4:71351230-71351249 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | + | chr1_4:71351232-71351251 | Msa0182630:CDS | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | - | chr1_4:71351243-71351262 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | + | chr1_4:71351243-71351262 | Msa0182630:CDS | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | + | chr1_4:71351253-71351272 | Msa0182630:CDS | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | - | chr1_4:71351377-71351396 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | - | chr1_4:71350622-71350641 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | + | chr1_4:71350633-71350652 | Msa0182630:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | - | chr1_4:71350637-71350656 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | - | chr1_4:71350705-71350724 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | + | chr1_4:71351169-71351188 | Msa0182630:CDS | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | - | chr1_4:71351230-71351249 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | + | chr1_4:71351232-71351251 | Msa0182630:CDS | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | - | chr1_4:71351243-71351262 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | + | chr1_4:71351243-71351262 | Msa0182630:CDS | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | + | chr1_4:71351253-71351272 | Msa0182630:CDS | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | - | chr1_4:71351377-71351396 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | - | chr1_4:71350579-71350598 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | + | chr1_4:71350591-71350610 | Msa0182630:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | + | chr1_4:71350592-71350611 | Msa0182630:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | - | chr1_4:71350650-71350669 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | - | chr1_4:71350655-71350674 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | - | chr1_4:71350702-71350721 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | + | chr1_4:71351025-71351044 | Msa0182630:CDS | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | + | chr1_4:71351068-71351087 | Msa0182630:CDS | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | - | chr1_4:71351316-71351335 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | + | chr1_4:71351321-71351340 | Msa0182630:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | - | chr1_4:71350579-71350598 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | + | chr1_4:71350591-71350610 | Msa0182630:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | + | chr1_4:71350592-71350611 | Msa0182630:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | - | chr1_4:71350650-71350669 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | - | chr1_4:71350655-71350674 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | - | chr1_4:71350702-71350721 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | + | chr1_4:71351025-71351044 | Msa0182630:CDS | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | + | chr1_4:71351068-71351087 | Msa0182630:CDS | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | - | chr1_4:71351316-71351335 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | + | chr1_4:71351321-71351340 | Msa0182630:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | + | chr1_4:71350568-71350587 | Msa0182630:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | - | chr1_4:71350580-71350599 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | - | chr1_4:71350584-71350603 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | - | chr1_4:71350602-71350621 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | - | chr1_4:71350858-71350877 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+CGG | + | chr1_4:71350868-71350887 | Msa0182630:intron | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | + | chr1_4:71351033-71351052 | Msa0182630:CDS | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | + | chr1_4:71351058-71351077 | Msa0182630:CDS | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | - | chr1_4:71351064-71351083 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | - | chr1_4:71351065-71351084 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | + | chr1_4:71351118-71351137 | Msa0182630:CDS | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | - | chr1_4:71351317-71351336 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | - | chr1_4:71351322-71351341 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | + | chr1_4:71350568-71350587 | Msa0182630:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | - | chr1_4:71350580-71350599 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | - | chr1_4:71350584-71350603 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | - | chr1_4:71350602-71350621 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | - | chr1_4:71350858-71350877 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+CGG | + | chr1_4:71350868-71350887 | Msa0182630:intron | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | + | chr1_4:71351033-71351052 | Msa0182630:CDS | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | + | chr1_4:71351058-71351077 | Msa0182630:CDS | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | - | chr1_4:71351064-71351083 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | - | chr1_4:71351065-71351084 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | + | chr1_4:71351118-71351137 | Msa0182630:CDS | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | - | chr1_4:71351317-71351336 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | - | chr1_4:71351322-71351341 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | - | chr1_4:71350603-71350622 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | - | chr1_4:71350610-71350629 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | + | chr1_4:71351307-71351326 | Msa0182630:CDS | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | - | chr1_4:71350603-71350622 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | - | chr1_4:71350610-71350629 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | + | chr1_4:71351307-71351326 | Msa0182630:CDS | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | + | chr1_4:71350528-71350547 | Msa0182630:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | - | chr1_4:71350611-71350630 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | + | chr1_4:71350528-71350547 | Msa0182630:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | - | chr1_4:71350611-71350630 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71350510 | 71351513 | 71350510 | ID=Msa0182630;Name=Msa0182630 |
| chr1_4 | mRNA | 71350510 | 71351513 | 71350510 | ID=Msa0182630-mRNA-1;Parent=Msa0182630;Name=Msa0182630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| chr1_4 | exon | 71350510 | 71350705 | 71350510 | ID=Msa0182630-mRNA-1:exon:23898;Parent=Msa0182630-mRNA-1 |
| chr1_4 | exon | 71351014 | 71351513 | 71351014 | ID=Msa0182630-mRNA-1:exon:23899;Parent=Msa0182630-mRNA-1 |
| chr1_4 | CDS | 71350510 | 71350705 | 71350510 | ID=Msa0182630-mRNA-1:cds;Parent=Msa0182630-mRNA-1 |
| chr1_4 | CDS | 71351014 | 71351513 | 71351014 | ID=Msa0182630-mRNA-1:cds;Parent=Msa0182630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
