AlfalfaGEDB | Msa0182630

M. sativa cultivar zhongmu-4 / Msa0182630

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0182630	XP_013470179.1	95.671	231	10	0	1	231	1	231	3.81e-163	460

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0182630	sp\|Q9M886\|LBD41_ARATH	40.529	227	122	5	1	225	1	216	2.75e-52	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0182630	G7ZZB8	95.671	231	10	0	1	231	1	231	1.82e-163	460

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TFs/TRs:

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Gene ID	Type	Classification
Msa0182630	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0182630	MtrunA17_Chr6g0469271	93.939	231	14	0	1	231	1	231	1.40e-164	453
Msa0182630	MtrunA17_Chr6g0470631	90.476	231	22	0	1	231	1	231	1.86e-158	438
Msa0182630	MtrunA17_Chr6g0470651	88.745	231	26	0	1	231	1	231	2.34e-156	432
Msa0182630	MtrunA17_Chr1g0209841	91.342	231	10	1	1	231	1	221	2.44e-156	432
Msa0182630	MtrunA17_Chr6g0457431	55.422	166	56	6	1	160	1	154	4.58e-60	186
Msa0182630	MtrunA17_Chr7g0215281	44.053	227	109	7	1	223	1	213	8.42e-56	180
Msa0182630	MtrunA17_Chr4g0053911	56.303	119	48	2	3	119	1	117	1.65e-46	154
Msa0182630	MtrunA17_Chr5g0401401	44.970	169	82	5	3	165	1	164	5.49e-45	150
Msa0182630	MtrunA17_Chr1g0207471	44.882	127	63	2	3	124	1	125	7.99e-36	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0182630	AT3G02550.1	40.529	227	122	5	1	225	1	216	2.80e-53	172
Msa0182630	AT1G68510.1	55.102	147	54	3	1	145	1	137	3.07e-53	171
Msa0182630	AT1G67100.1	54.861	144	57	3	1	144	1	136	5.96e-50	163
Msa0182630	AT3G49940.1	53.659	123	55	1	3	125	1	121	1.41e-45	152
Msa0182630	AT5G67420.2	55.963	109	46	1	3	111	1	107	1.14e-43	147
Msa0182630	AT5G67420.1	55.963	109	46	1	3	111	1	107	1.14e-43	147
Msa0182630	AT4G37540.1	57.798	109	44	1	3	111	1	107	1.50e-43	147

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Find 62 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAATTCAAAAGAGC+TGG	0.446487	1_4:+71351277	Msa0182630:CDS
AAACTCAATTCAAAAGAGCT+GGG	0.590181	1_4:+71351278	Msa0182630:CDS
AAATTGGGGAGACTTCATCA+AGG	0.644743	1_4:+71351383	Msa0182630:CDS
AAATTTGGCAAGGAAGAGGG+TGG	0.680062	1_4:-71350619	None:intergenic
AACCTATGATATACGCCATG+TGG	0.679816	1_4:+71351225	Msa0182630:CDS
AAGAATACCAACATGGAAAT+TGG	0.166066	1_4:+71351367	Msa0182630:CDS
AAGCCAAGCGCCCCATATGT+GGG	0.589682	1_4:-71351061	None:intergenic
AATCAAAATCATAATCCACC+AGG	0.664735	1_4:+71350684	Msa0182630:CDS
AATCATCACTACAACCTTTG+CGG	0.504650	1_4:-71350542	None:intergenic
AATCCCACATATGGGGCGCT+TGG	0.518707	1_4:+71351058	Msa0182630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAATTTGGCAAGGAAGA+GGG	-	chr1_4:71350625-71350644	None:intergenic	30.0%
AATCAAAATCATAATCCACC+AGG	+	chr1_4:71350684-71350703	Msa0182630:CDS	30.0%
TAAAAAAGTTTGTCGTGTAG+CGG	-	chr1_4:71350817-71350836	None:intergenic	30.0%
ATGGAACATAAATGAGACAT+AGG	-	chr1_4:71350907-71350926	None:intergenic	30.0%
GTTTAAATCATTGTTGTACG+AGG	+	chr1_4:71351018-71351037	Msa0182630:CDS	30.0%
AAAACTCAATTCAAAAGAGC+TGG	+	chr1_4:71351277-71351296	Msa0182630:CDS	30.0%
AAACTCAATTCAAAAGAGCT+GGG	+	chr1_4:71351278-71351297	Msa0182630:CDS	30.0%
CATGTTGGTATTCTTCAAAA+GGG	-	chr1_4:71351362-71351381	None:intergenic	30.0%
AAGAATACCAACATGGAAAT+TGG	+	chr1_4:71351367-71351386	Msa0182630:CDS	30.0%
AGAATACCAACATGGAAATT+GGG	+	chr1_4:71351368-71351387	Msa0182630:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	71350510	71351513	71350510	ID=Msa0182630;Name=Msa0182630
chr1_4	mRNA	71350510	71351513	71350510	ID=Msa0182630-mRNA-1;Parent=Msa0182630;Name=Msa0182630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|231
chr1_4	exon	71350510	71350705	71350510	ID=Msa0182630-mRNA-1:exon:23898;Parent=Msa0182630-mRNA-1
chr1_4	exon	71351014	71351513	71351014	ID=Msa0182630-mRNA-1:exon:23899;Parent=Msa0182630-mRNA-1
chr1_4	CDS	71350510	71350705	71350510	ID=Msa0182630-mRNA-1:cds;Parent=Msa0182630-mRNA-1
chr1_4	CDS	71351014	71351513	71351014	ID=Msa0182630-mRNA-1:cds;Parent=Msa0182630-mRNA-1

Gene Sequence

>Msa0182630

ATGAAGTTGAGTTGCAATGGGTGTCGTGTGCTCCGCAAAGGTTGTAGTGATGATTGTATCATCAAGCCCTGCCTTGAGTGGATCAGTTGCCCTGAATCCCAAGGGCATGCCACCCTCTTCCTTGCCAAATTTTATGGCCGAACCGGTTTGCTCAATCTCCTCACCAATGCTACCAATCAAAATCATAATCCACCAGCTGTGTTTAAATCATTGTTGTACGAGGCAGCTGGTAGATTGGTGAATCCCACATATGGGGCGCTTGGCTTATTTTGGACAGCGAATTGGAGTCGTTGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCGAATATTAATGACAGTTTTACAATGATTGATGGGCAGACATCATCAGGTACACTCAATGCTGAAAATCATGTTCTCCCCAAAACCTATGATATACGCCATGTGGCAAAAGGTACCAATGTGGACATCAAAGGGAAAACTCAATTCAAAAGAGCTGGGCAAGTTCTGAAGCCCAAGCCACGAGTTGGTTCAGTCGACTCGGCTACAATGTTGAAATCCCTTTTGAAGAATACCAACATGGAAATTGGGGAGACTTCATCAAGGGTTCAAACAGAGAAAATTAATGAAGCTGCTGAGAATCAAGTGAATTTGGAACTCACTCTTGGCTTTGATTGCCAATCAACTAAGGGCAAGAAAATATTAGATAAATGA

Protein sequence

>Msa0182630

MKLSCNGCRVLRKGCSDDCIIKPCLEWISCPESQGHATLFLAKFYGRTGLLNLLTNATNQNHNPPAVFKSLLYEAAGRLVNPTYGALGLFWTANWSRCEAAVEAVLTGSNINDSFTMIDGQTSSGTLNAENHVLPKTYDIRHVAKGTNVDIKGKTQFKRAGQVLKPKPRVGSVDSATMLKSLLKNTNMEIGETSSRVQTEKINEAAENQVNLELTLGFDCQSTKGKKILDK*