AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183400 MtrunA17_Chr3g0117091 71.067 356 44 11 1 311 1 342 6.88e-165 462
Msa0183400 MtrunA17_Chr1g0211161 72.694 271 19 7 3 262 4 230 1.98e-125 357
Msa0183400 MtrunA17_Chr4g0058631 51.524 361 118 13 1 311 1 354 4.35e-105 311
Msa0183400 MtrunA17_Chr7g0270891 76.259 139 33 0 1 139 1 139 6.80e-76 236
Msa0183400 MtrunA17_Chr1g0193371 81.395 129 24 0 1 129 1 129 1.06e-75 236
Msa0183400 MtrunA17_Chr1g0193801 70.861 151 40 1 1 147 1 151 4.64e-74 232
Msa0183400 MtrunA17_Chr7g0271241 79.545 132 27 0 1 132 1 132 1.12e-68 218
Msa0183400 MtrunA17_Chr8g0342521 75.000 124 31 0 1 124 1 124 3.06e-66 211
Msa0183400 MtrunA17_Chr2g0330041 74.400 125 32 0 1 125 1 125 6.39e-66 212
Msa0183400 MtrunA17_Chr8g0342541 74.194 124 32 0 1 124 1 124 2.01e-65 209
Msa0183400 MtrunA17_Chr2g0309911 69.841 126 38 0 4 129 3 128 1.29e-63 203
Msa0183400 MtrunA17_Chr3g0131121 53.704 162 67 1 1 162 1 154 3.26e-61 196
Msa0183400 MtrunA17_Chr8g0342481 76.271 118 27 1 1 117 1 118 1.58e-60 198
Msa0183400 MtrunA17_Chr5g0435101 59.286 140 52 1 3 137 2 141 9.18e-60 190
Msa0183400 MtrunA17_Chr8g0387421 45.868 242 84 6 1 216 1 221 2.85e-59 192
Msa0183400 MtrunA17_Chr4g0039971 42.324 241 131 3 1 235 2 240 3.94e-59 193
Msa0183400 MtrunA17_Chr8g0385321 64.341 129 46 0 1 129 1 129 5.20e-59 191
Msa0183400 MtrunA17_Chr4g0057031 64.341 129 46 0 1 129 1 129 7.66e-59 189
Msa0183400 MtrunA17_Chr5g0434571 65.891 129 44 0 1 129 37 165 8.38e-59 192
Msa0183400 MtrunA17_Chr3g0110351 65.649 131 45 0 1 131 1 131 1.44e-58 190
Msa0183400 MtrunA17_Chr4g0037141 62.016 129 49 0 1 129 1 129 1.79e-58 189
Msa0183400 MtrunA17_Chr7g0217741 54.023 174 72 2 1 174 1 166 2.09e-57 187
Msa0183400 MtrunA17_Chr3g0115821 62.500 128 48 0 1 128 1 128 3.25e-57 187
Msa0183400 MtrunA17_Chr7g0228891 59.286 140 57 0 1 140 1 140 8.76e-57 184
Msa0183400 MtrunA17_Chr6g0452271 59.690 129 52 0 1 129 1 129 1.05e-56 186
Msa0183400 MtrunA17_Chr5g0397231 70.909 110 32 0 1 110 1 110 1.10e-56 186
Msa0183400 MtrunA17_Chr4g0042671 64.844 128 45 0 1 128 1 128 1.13e-56 188
Msa0183400 MtrunA17_Chr5g0395281 64.800 125 44 0 12 136 12 136 1.34e-56 185
Msa0183400 MtrunA17_Chr6g0453471 46.957 230 107 6 1 228 1 217 1.83e-56 186
Msa0183400 MtrunA17_Chr3g0103281 47.291 203 98 3 1 203 1 194 1.06e-55 183
Msa0183400 MtrunA17_Chr5g0410961 60.156 128 51 0 1 128 1 128 3.09e-55 182
Msa0183400 MtrunA17_Chr2g0281071 61.240 129 49 1 1 128 1 129 3.58e-55 182
Msa0183400 MtrunA17_Chr2g0323411 59.542 131 53 0 1 131 1 131 7.53e-55 181
Msa0183400 MtrunA17_Chr6g0470971 75.455 110 27 0 9 118 11 120 7.79e-55 179
Msa0183400 MtrunA17_Chr4g0032401 75.472 106 26 0 11 116 16 121 9.12e-55 181
Msa0183400 MtrunA17_Chr3g0088461 74.074 108 28 0 9 116 19 126 2.77e-54 180
Msa0183400 MtrunA17_Chr2g0328771 74.286 105 27 0 12 116 20 124 3.02e-54 179
Msa0183400 MtrunA17_Chr4g0048511 60.465 129 50 1 1 128 1 129 3.80e-54 180
Msa0183400 MtrunA17_Chr1g0203441 70.588 119 34 1 9 127 10 127 5.39e-54 177
Msa0183400 MtrunA17_Chr8g0349261 52.247 178 72 4 1 174 1 169 1.32e-53 177
Msa0183400 MtrunA17_Chr3g0121241 62.903 124 46 0 6 129 36 159 1.89e-53 177
Msa0183400 MtrunA17_Chr4g0044421 60.317 126 50 0 1 126 1 126 2.30e-52 170
Msa0183400 MtrunA17_Chr1g0203411 62.931 116 43 0 1 116 1 116 3.69e-52 173
Msa0183400 MtrunA17_Chr7g0274581 61.864 118 45 0 1 118 1 118 1.23e-51 169
Msa0183400 MtrunA17_Chr2g0323351 61.864 118 45 0 1 118 1 118 1.76e-51 170
Msa0183400 MtrunA17_Chr7g0261281 61.207 116 45 0 1 116 1 116 8.12e-50 166
Msa0183400 MtrunA17_Chr4g0070611 49.383 162 67 2 1 147 1 162 9.30e-50 167
Msa0183400 MtrunA17_Chr4g0022931 59.821 112 45 0 5 116 6 117 2.57e-49 165
Msa0183400 MtrunA17_Chr1g0187761 63.793 116 42 0 1 116 1 116 3.81e-49 164
Msa0183400 MtrunA17_Chr4g0070641 49.689 161 66 2 1 146 1 161 4.48e-49 161
Msa0183400 MtrunA17_Chr1g0152011 38.783 263 122 8 1 227 1 260 8.35e-49 166
Msa0183400 MtrunA17_Chr4g0022901 59.292 113 46 0 5 117 6 118 2.68e-48 162
Msa0183400 MtrunA17_Chr7g0217221 61.017 118 46 0 1 118 1 118 4.79e-47 159
Msa0183400 MtrunA17_Chr1g0151941 51.095 137 63 3 1 136 1 134 5.23e-47 158
Msa0183400 MtrunA17_Chr1g0167691 58.974 117 48 0 1 117 1 117 5.68e-47 158
Msa0183400 MtrunA17_Chr4g0022911 56.780 118 50 1 1 117 1 118 6.38e-47 159
Msa0183400 MtrunA17_Chr4g0068061 62.931 116 43 0 1 116 1 116 7.59e-47 160
Msa0183400 MtrunA17_Chr1g0167661 52.778 144 64 1 1 144 1 140 1.18e-46 157
Msa0183400 MtrunA17_Chr5g0417821 59.829 117 47 0 12 128 7 123 1.60e-46 158
Msa0183400 MtrunA17_Chr1g0194951 45.604 182 85 2 1 180 1 170 5.33e-46 159
Msa0183400 MtrunA17_Chr8g0346561 58.475 118 49 0 1 118 1 118 7.08e-46 157
Msa0183400 MtrunA17_Chr4g0060721 54.745 137 56 1 1 131 2 138 8.14e-46 158
Msa0183400 MtrunA17_Chr7g0275911 57.983 119 50 0 1 119 1 119 1.31e-45 155
Msa0183400 MtrunA17_Chr5g0400821 57.500 120 50 1 1 119 1 120 1.58e-45 156
Msa0183400 MtrunA17_Chr4g0028311 59.322 118 47 1 1 117 1 118 3.04e-45 156
Msa0183400 MtrunA17_Chr8g0342531 70.833 96 28 0 1 96 1 96 3.94e-45 150
Msa0183400 MtrunA17_Chr3g0092401 60.169 118 47 0 1 118 2 119 4.41e-45 155
Msa0183400 MtrunA17_Chr2g0311221 60.550 109 43 0 2 110 4 112 8.73e-45 155
Msa0183400 MtrunA17_Chr7g0254411 57.143 126 52 1 1 124 1 126 1.29e-44 155
Msa0183400 MtrunA17_Chr8g0342511 75.862 87 21 0 1 87 1 87 3.28e-44 146
Msa0183400 MtrunA17_Chr3g0135311 56.780 118 50 1 1 117 1 118 7.70e-44 153
Msa0183400 MtrunA17_Chr8g0343831 60.000 110 44 0 10 119 6 115 8.92e-44 150
Msa0183400 MtrunA17_Chr7g0264641 56.780 118 50 1 1 117 1 118 1.27e-43 150
Msa0183400 MtrunA17_Chr6g0453211 59.091 110 45 0 1 110 1 110 2.48e-42 148
Msa0183400 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 4.95e-42 147
Msa0183400 MtrunA17_Chr4g0055981 45.251 179 76 4 9 184 52 211 1.29e-41 144
Msa0183400 MtrunA17_Chr7g0247131 71.264 87 25 0 43 129 9 95 1.50e-41 145
Msa0183400 MtrunA17_Chr4g0054391 58.182 110 45 1 1 109 1 110 2.52e-41 145
Msa0183400 MtrunA17_Chr8g0342471 69.565 92 27 1 1 91 1 92 2.88e-41 140
Msa0183400 MtrunA17_Chr1g0186061 57.658 111 47 0 5 115 13 123 3.08e-41 144
Msa0183400 MtrunA17_Chr1g0168661 56.250 112 49 0 4 115 13 124 5.32e-41 143
Msa0183400 MtrunA17_Chr8g0342461 68.478 92 28 1 1 91 1 92 7.82e-41 139
Msa0183400 MtrunA17_Chr4g0072751 54.955 111 49 1 1 110 1 111 5.65e-40 143
Msa0183400 MtrunA17_Chr4g0022891 44.785 163 75 3 9 162 9 165 7.08e-40 140
Msa0183400 MtrunA17_Chr7g0269831 60.345 116 46 0 1 116 1 116 8.51e-40 142
Msa0183400 MtrunA17_Chr3g0099131 57.273 110 46 1 12 121 41 149 1.87e-39 145
Msa0183400 MtrunA17_Chr1g0180391 56.481 108 47 0 12 119 19 126 4.67e-39 137
Msa0183400 MtrunA17_Chr7g0228231 52.542 118 54 1 1 116 1 118 6.29e-39 136
Msa0183400 MtrunA17_Chr4g0022881 48.120 133 62 1 9 134 9 141 6.36e-39 137
Msa0183400 MtrunA17_Chr6g0450101 53.390 118 53 1 1 116 1 118 7.35e-39 136
Msa0183400 MtrunA17_Chr2g0327821 46.512 129 67 1 8 134 2 130 1.00e-38 136
Msa0183400 MtrunA17_Chr1g0194301 55.769 104 46 0 12 115 33 136 1.01e-38 137
Msa0183400 MtrunA17_Chr6g0487491 52.381 126 51 2 1 117 1 126 1.06e-38 137
Msa0183400 MtrunA17_Chr3g0080861 56.731 104 45 0 12 115 37 140 7.34e-38 140
Msa0183400 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 7.60e-38 140
Msa0183400 MtrunA17_Chr1g0154031 55.769 104 46 0 12 115 76 179 1.08e-37 138
Msa0183400 MtrunA17_Chr5g0434831 45.638 149 75 2 10 158 5 147 1.61e-37 132
Msa0183400 MtrunA17_Chr1g0194291 56.731 104 45 0 12 115 21 124 2.08e-37 134
Msa0183400 MtrunA17_Chr1g0209661 50.427 117 58 0 11 127 26 142 2.38e-37 135
Msa0183400 MtrunA17_Chr7g0240821 59.000 100 41 0 17 116 6 105 7.41e-37 131
Msa0183400 MtrunA17_Chr5g0434931 44.295 149 75 1 8 156 31 171 1.33e-36 132
Msa0183400 MtrunA17_Chr2g0322521 48.201 139 69 2 2 140 19 154 1.35e-36 135
Msa0183400 MtrunA17_Chr5g0434911 51.327 113 55 0 7 119 16 128 3.38e-36 131
Msa0183400 MtrunA17_Chr5g0434841 42.675 157 83 3 10 165 18 168 3.29e-35 129
Msa0183400 MtrunA17_Chr7g0220341 45.833 144 60 2 12 153 25 152 4.58e-35 128
Msa0183400 MtrunA17_Chr4g0030881 50.000 114 50 1 13 119 8 121 4.59e-35 127
Msa0183400 MtrunA17_Chr4g0042611 61.364 88 34 0 1 88 1 88 7.81e-35 122
Msa0183400 MtrunA17_Chr8g0360111 55.446 101 45 0 12 112 25 125 1.42e-34 126
Msa0183400 MtrunA17_Chr7g0228991 40.351 171 93 3 8 177 25 187 1.49e-34 127
Msa0183400 MtrunA17_Chr1g0192411 48.062 129 61 1 11 133 11 139 2.56e-34 129
Msa0183400 MtrunA17_Chr4g0068921 54.630 108 48 1 12 119 24 130 1.58e-32 119
Msa0183400 MtrunA17_Chr2g0323321 60.465 86 34 0 7 92 6 91 1.76e-32 116
Msa0183400 MtrunA17_Chr8g0334881 51.402 107 51 1 9 114 7 113 2.90e-32 122
Msa0183400 MtrunA17_Chr2g0293911 54.369 103 47 0 12 114 24 126 1.12e-31 120
Msa0183400 MtrunA17_Chr5g0440781 49.107 112 55 2 13 123 13 123 1.80e-31 116
Msa0183400 MtrunA17_Chr3g0093811 60.920 87 34 0 43 129 13 99 2.60e-31 118
Msa0183400 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 3.92e-31 115
Msa0183400 MtrunA17_Chr5g0440761 49.107 112 55 2 13 123 13 123 7.45e-31 117
Msa0183400 MtrunA17_Chr5g0441141 49.107 112 55 2 13 123 13 123 8.02e-31 117
Msa0183400 MtrunA17_Chr5g0395221 61.250 80 31 0 9 88 9 88 1.22e-29 108
Msa0183400 MtrunA17_Chr2g0294811 60.227 88 35 0 1 88 1 88 1.45e-29 109
Msa0183400 MtrunA17_Chr4g0013361 50.000 104 51 1 12 114 10 113 2.13e-29 114
Msa0183400 MtrunA17_Chr4g0008551 50.000 114 50 3 14 126 38 145 1.52e-28 112
Msa0183400 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 5.39e-28 105
Msa0183400 MtrunA17_Chr7g0229131 38.667 150 86 3 43 187 3 151 6.11e-28 106
Msa0183400 MtrunA17_Chr5g0401731 47.863 117 58 2 14 129 15 129 2.83e-27 108
Msa0183400 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 3.99e-27 108
Msa0183400 MtrunA17_Chr7g0238631 43.972 141 71 4 8 142 107 245 1.49e-26 109
Msa0183400 MtrunA17_Chr4g0053431 50.000 102 50 1 14 115 5 105 1.65e-26 105
Msa0183400 MtrunA17_Chr4g0058991 41.071 112 63 2 9 119 204 313 8.75e-26 106
Msa0183400 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 9.02e-26 102
Msa0183400 MtrunA17_Chr3g0117511 33.333 198 115 7 2 187 169 361 9.54e-26 106
Msa0183400 MtrunA17_Chr3g0133601 49.020 102 51 1 14 115 37 137 1.75e-25 101
Msa0183400 MtrunA17_Chr6g0454921 48.544 103 50 2 14 115 15 115 4.62e-25 100
Msa0183400 MtrunA17_Chr3g0139671 45.455 110 57 2 8 116 79 186 5.66e-25 105
Msa0183400 MtrunA17_Chr3g0139671 31.250 128 72 3 14 140 33 145 8.89e-11 62.8
Msa0183400 MtrunA17_Chr4g0042501 37.162 148 84 4 14 160 105 244 2.32e-24 102
Msa0183400 MtrunA17_Chr5g0434901 56.338 71 31 0 43 113 4 74 2.84e-24 95.1
Msa0183400 MtrunA17_Chr6g0480581 43.137 102 55 2 14 114 4 103 7.41e-24 97.4
Msa0183400 MtrunA17_Chr1g0157731 44.545 110 58 2 8 116 85 192 7.82e-24 102
Msa0183400 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 1.16e-23 100
Msa0183400 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 2.71e-22 91.3
Msa0183400 MtrunA17_Chr7g0228531 38.679 106 63 2 14 119 220 323 9.91e-22 94.7
Msa0183400 MtrunA17_Chr6g0453751 50.538 93 37 2 12 95 20 112 1.26e-21 88.6
Msa0183400 MtrunA17_Chr3g0125801 43.925 107 57 2 14 119 16 120 3.86e-21 91.3
Msa0183400 MtrunA17_Chr5g0437321 46.000 100 51 2 14 112 19 116 4.40e-21 90.9
Msa0183400 MtrunA17_Chr7g0228401 45.977 87 46 1 25 111 290 375 2.34e-20 91.3
Msa0183400 MtrunA17_Chr7g0254261 39.844 128 73 3 14 140 89 213 1.36e-19 87.8
Msa0183400 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 1.57e-19 87.8
Msa0183400 MtrunA17_Chr5g0425591 45.238 84 45 1 13 95 10 93 1.75e-19 81.6
Msa0183400 MtrunA17_Chr5g0397841 42.000 100 55 2 12 110 108 205 3.65e-19 87.4
Msa0183400 MtrunA17_Chr1g0177901 45.455 88 44 2 24 111 7 90 4.05e-19 84.0
Msa0183400 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 3.11e-18 84.7
Msa0183400 MtrunA17_Chr7g0238651 32.468 154 90 5 17 157 10 162 6.69e-18 83.2
Msa0183400 MtrunA17_Chr7g0233061 32.639 144 70 4 14 142 180 311 5.65e-17 80.5
Msa0183400 MtrunA17_Chr5g0395231 66.667 51 17 0 78 128 5 55 7.88e-17 78.6
Msa0183400 MtrunA17_Chr3g0145551 71.053 38 11 0 92 129 2 39 1.08e-13 65.9
Msa0183400 MtrunA17_Chr5g0416341 34.343 99 64 1 17 115 29 126 1.20e-13 71.2
Msa0183400 MtrunA17_Chr8g0362231 30.556 144 87 4 17 156 25 159 1.60e-13 70.9
Msa0183400 MtrunA17_Chr1g0193901 51.667 60 28 1 10 68 9 68 3.49e-13 65.1
Msa0183400 MtrunA17_Chr1g0193891 51.667 60 28 1 10 68 9 68 3.49e-13 65.1
Msa0183400 MtrunA17_Chr1g0193871 51.667 60 28 1 10 68 9 68 3.49e-13 65.1
Msa0183400 MtrunA17_Chr1g0193881 51.667 60 28 1 10 68 9 68 3.49e-13 65.1
Msa0183400 MtrunA17_Chr4g0042621 70.000 40 12 0 89 128 15 54 4.73e-13 68.9
Msa0183400 MtrunA17_Chr5g0434871 56.818 44 19 0 74 117 2 45 5.47e-13 63.2
Msa0183400 MtrunA17_Chr2g0322831 58.537 41 17 0 70 110 34 74 1.83e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183400 AT5G26660.1 81.955 133 24 0 1 133 1 133 3.71e-79 244
Msa0183400 AT1G57560.1 80.620 129 25 0 1 129 1 129 1.57e-75 234
Msa0183400 AT1G57560.2 78.947 133 28 0 1 133 1 133 1.66e-75 233
Msa0183400 AT1G09540.1 75.172 145 34 1 1 145 1 143 4.27e-75 235
Msa0183400 AT4G01680.3 74.126 143 36 1 1 143 1 142 5.10e-74 228
Msa0183400 AT4G01680.1 74.126 143 36 1 1 143 1 142 7.65e-73 228
Msa0183400 AT4G01680.2 68.387 155 36 2 1 143 1 154 2.44e-69 219
Msa0183400 AT3G13890.2 77.778 117 26 0 1 117 1 117 6.00e-64 206
Msa0183400 AT3G12720.1 69.919 123 37 0 4 126 14 136 9.31e-64 204
Msa0183400 AT3G13890.1 72.222 126 26 1 1 117 1 126 6.89e-61 198
Msa0183400 AT1G63910.1 63.704 135 49 0 1 135 1 135 2.70e-60 197
Msa0183400 AT1G66230.1 62.238 143 50 1 1 143 1 139 4.95e-60 193
Msa0183400 AT4G34990.1 53.293 167 77 1 1 167 1 166 7.40e-60 192
Msa0183400 AT4G22680.1 60.417 144 57 0 1 144 1 144 1.51e-59 191
Msa0183400 AT5G16600.1 60.959 146 57 0 1 146 1 146 2.64e-59 193
Msa0183400 AT4G12350.1 63.566 129 47 0 1 129 1 129 3.37e-58 189
Msa0183400 AT5G15310.4 49.744 195 85 3 1 190 1 187 5.53e-58 187
Msa0183400 AT4G21440.1 50.575 174 72 1 1 174 1 160 8.50e-58 190
Msa0183400 AT5G15310.1 49.744 195 85 3 1 190 1 187 1.23e-57 189
Msa0183400 AT2G16720.1 55.782 147 63 1 1 147 1 145 1.31e-57 187
Msa0183400 AT5G15310.2 49.744 195 85 3 1 190 1 187 1.49e-57 188
Msa0183400 AT3G02940.2 60.938 128 50 0 1 128 1 128 1.73e-57 187
Msa0183400 AT3G61250.1 52.198 182 77 4 1 182 1 172 1.83e-57 187
Msa0183400 AT5G61420.2 58.273 139 58 0 1 139 1 139 2.58e-57 189
Msa0183400 AT3G02940.1 60.938 128 50 0 1 128 1 128 4.23e-57 187
Msa0183400 AT3G02940.3 60.938 128 50 0 1 128 1 128 4.23e-57 187
Msa0183400 AT3G01140.2 51.913 183 77 3 1 179 1 176 5.47e-57 187
Msa0183400 AT4G05100.1 61.240 129 49 1 1 128 1 129 6.19e-57 187
Msa0183400 AT1G34670.1 41.007 278 115 8 1 277 1 230 7.50e-57 187
Msa0183400 AT4G38620.1 54.054 148 65 1 1 148 1 145 2.28e-56 184
Msa0183400 AT1G22640.1 58.824 136 54 1 1 136 1 134 2.47e-56 183
Msa0183400 AT5G65230.1 62.121 132 50 0 1 132 1 132 5.32e-56 184
Msa0183400 AT5G16770.4 60.156 128 51 0 1 128 1 128 1.03e-55 184
Msa0183400 AT5G16770.3 60.156 128 51 0 1 128 1 128 1.03e-55 184
Msa0183400 AT4G28110.1 58.594 128 53 0 1 128 1 128 1.43e-55 182
Msa0183400 AT5G56110.1 56.667 150 59 1 1 150 1 144 1.77e-55 183
Msa0183400 AT5G16770.1 60.156 128 51 0 1 128 1 128 1.81e-55 183
Msa0183400 AT5G16770.2 60.156 128 51 0 1 128 1 128 1.81e-55 183
Msa0183400 AT4G09460.1 54.362 149 61 1 1 149 1 142 2.36e-55 180
Msa0183400 AT5G07690.1 60.465 129 51 0 1 129 1 129 2.69e-55 183
Msa0183400 AT5G10280.1 61.719 128 49 0 1 128 1 128 2.72e-55 182
Msa0183400 AT5G14340.1 62.791 129 48 0 1 129 13 141 3.40e-55 181
Msa0183400 AT3G01140.1 52.247 178 74 3 6 179 49 219 3.59e-55 184
Msa0183400 AT3G13540.1 54.605 152 69 0 6 157 17 168 4.95e-55 179
Msa0183400 AT5G60890.1 58.140 129 54 0 1 129 1 129 5.48e-55 181
Msa0183400 AT4G17785.2 59.854 137 54 1 1 136 1 137 1.08e-54 182
Msa0183400 AT4G17785.1 59.854 137 54 1 1 136 1 137 1.38e-54 182
Msa0183400 AT1G74430.1 63.281 128 47 0 1 128 1 128 2.08e-54 179
Msa0183400 AT5G12870.1 73.394 109 29 0 10 118 16 124 5.63e-54 177
Msa0183400 AT1G35515.1 59.231 130 53 0 1 130 1 130 7.50e-54 175
Msa0183400 AT5G54230.1 60.305 131 52 0 1 131 1 131 2.60e-53 177
Msa0183400 AT5G07700.1 58.140 129 54 0 1 129 1 129 2.79e-53 177
Msa0183400 AT5G07700.2 58.140 129 54 0 1 129 1 129 2.79e-53 177
Msa0183400 AT1G74080.1 53.846 143 66 0 1 143 1 143 8.28e-53 176
Msa0183400 AT3G08500.1 70.690 116 31 1 4 116 19 134 8.37e-53 176
Msa0183400 AT3G28470.1 62.791 129 48 0 1 129 1 129 1.14e-52 176
Msa0183400 AT5G62320.1 51.634 153 63 2 2 143 3 155 8.79e-52 171
Msa0183400 AT1G18570.1 57.692 130 54 1 1 129 1 130 1.31e-51 174
Msa0183400 AT2G31180.1 62.712 118 44 0 1 118 1 118 1.76e-51 170
Msa0183400 AT1G18710.1 60.331 121 48 0 12 132 12 132 1.20e-50 169
Msa0183400 AT1G06180.1 63.793 116 42 0 1 116 1 116 3.28e-50 167
Msa0183400 AT3G48920.1 61.111 126 47 2 9 132 15 140 6.22e-50 167
Msa0183400 AT5G52260.1 55.629 151 57 3 9 158 9 150 5.92e-49 164
Msa0183400 AT3G12820.1 62.393 117 44 0 3 119 5 121 1.26e-48 162
Msa0183400 AT3G23250.1 48.555 173 78 4 1 170 1 165 1.49e-48 164
Msa0183400 AT1G56160.1 63.478 115 42 0 2 116 4 118 1.60e-48 164
Msa0183400 AT4G25560.1 66.055 109 37 0 10 118 8 116 1.93e-48 163
Msa0183400 AT5G26660.2 80.899 89 17 0 45 133 14 102 3.24e-48 164
Msa0183400 AT1G79180.1 61.538 117 45 0 2 118 4 120 3.67e-48 163
Msa0183400 AT1G16490.1 42.727 220 108 5 2 205 4 221 1.10e-47 161
Msa0183400 AT3G62610.1 62.069 116 44 0 1 116 1 116 1.47e-46 160
Msa0183400 AT2G47460.1 62.069 116 44 0 1 116 1 116 8.44e-46 159
Msa0183400 AT5G35550.1 40.789 228 113 4 9 229 11 223 1.08e-45 155
Msa0183400 AT3G47600.1 61.017 118 46 0 1 118 1 118 1.13e-45 157
Msa0183400 AT5G49330.1 55.072 138 61 1 1 137 1 138 1.77e-45 157
Msa0183400 AT5G62470.2 61.864 118 45 0 1 118 1 118 1.89e-45 157
Msa0183400 AT5G57620.1 57.627 118 49 1 1 117 1 118 2.59e-45 157
Msa0183400 AT5G65790.1 57.500 120 50 1 1 119 1 120 2.97e-45 157
Msa0183400 AT1G74650.1 60.684 117 46 0 1 117 1 117 3.18e-45 156
Msa0183400 AT5G23000.1 58.475 118 48 1 1 117 1 118 4.26e-45 156
Msa0183400 AT1G08810.1 59.016 122 50 0 1 122 1 122 5.07e-45 154
Msa0183400 AT3G49690.1 57.500 120 50 1 1 119 1 120 8.99e-45 155
Msa0183400 AT3G28910.1 57.364 129 53 1 1 129 1 127 1.95e-44 154
Msa0183400 AT5G14750.1 60.577 104 41 0 13 116 17 120 2.87e-44 150
Msa0183400 AT5G62470.1 61.864 118 44 1 1 118 1 117 1.44e-43 152
Msa0183400 AT4G37780.1 55.725 131 54 3 1 129 1 129 2.28e-43 151
Msa0183400 AT5G40330.1 59.615 104 42 0 13 116 13 116 5.82e-43 147
Msa0183400 AT2G36890.1 51.145 131 63 1 1 130 1 131 9.61e-43 149
Msa0183400 AT2G36890.2 51.969 127 60 1 1 126 42 168 1.13e-42 150
Msa0183400 AT3G27920.1 55.556 108 48 0 10 117 12 119 2.40e-42 146
Msa0183400 AT5G52600.1 50.000 134 58 1 9 133 9 142 1.13e-41 143
Msa0183400 AT3G01530.1 58.095 105 44 0 12 116 25 129 2.77e-41 142
Msa0183400 AT1G79180.2 48.000 150 45 1 2 118 4 153 3.84e-41 145
Msa0183400 AT3G30210.1 44.571 175 87 2 13 185 28 194 2.97e-40 142
Msa0183400 AT5G40350.1 55.455 110 49 0 11 120 16 125 3.31e-40 140
Msa0183400 AT4G13480.1 52.308 130 52 1 8 137 2 121 4.44e-40 141
Msa0183400 AT3G24310.1 57.407 108 46 0 8 115 14 121 5.51e-40 141
Msa0183400 AT5G55020.1 58.182 110 45 1 12 121 26 134 2.05e-39 145
Msa0183400 AT2G26960.1 38.636 220 109 8 8 224 16 212 2.61e-39 143
Msa0183400 AT4G26930.1 46.939 147 76 2 12 158 19 163 2.68e-39 142
Msa0183400 AT3G27810.1 48.062 129 62 1 11 134 19 147 5.17e-39 137
Msa0183400 AT5G06100.1 47.887 142 71 2 10 151 30 168 5.66e-39 142
Msa0183400 AT5G59780.3 54.630 108 49 0 8 115 4 111 8.15e-39 137
Msa0183400 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.10e-38 142
Msa0183400 AT1G48000.1 44.937 158 75 3 11 166 31 178 1.41e-38 137
Msa0183400 AT2G32460.1 51.613 124 49 1 10 122 16 139 1.46e-38 142
Msa0183400 AT3G11440.2 56.731 104 45 0 12 115 41 144 1.58e-38 142
Msa0183400 AT5G06100.5 47.887 142 71 2 10 151 30 168 2.17e-38 142
Msa0183400 AT5G06100.2 47.887 142 71 2 10 151 30 168 2.17e-38 142
Msa0183400 AT5G06100.3 47.887 142 71 2 10 151 30 168 2.17e-38 142
Msa0183400 AT5G06100.4 47.887 142 71 2 10 151 30 168 2.17e-38 142
Msa0183400 AT3G46130.1 54.206 107 49 0 13 119 10 116 4.02e-38 136
Msa0183400 AT3G11440.3 55.140 107 48 0 9 115 38 144 9.03e-38 141
Msa0183400 AT3G11440.4 55.140 107 48 0 9 115 38 144 9.03e-38 141
Msa0183400 AT3G11440.1 55.140 107 48 0 9 115 38 144 9.03e-38 141
Msa0183400 AT1G68320.1 51.695 118 57 0 10 127 17 134 5.34e-37 134
Msa0183400 AT1G25340.1 52.174 115 55 0 13 127 19 133 1.19e-36 133
Msa0183400 AT1G66370.1 54.717 106 48 0 10 115 6 111 1.25e-35 129
Msa0183400 AT2G47190.1 34.348 230 122 5 12 238 20 223 1.88e-35 129
Msa0183400 AT3G53200.1 42.763 152 85 1 9 160 6 155 7.93e-35 127
Msa0183400 AT3G12820.2 73.611 72 19 0 48 119 2 73 1.66e-34 124
Msa0183400 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.44e-33 120
Msa0183400 AT2G26950.1 46.087 115 61 1 7 121 11 124 1.63e-33 127
Msa0183400 AT3G06490.1 57.282 103 44 0 12 114 19 121 2.51e-33 125
Msa0183400 AT1G56650.1 49.618 131 58 1 10 132 6 136 4.24e-33 122
Msa0183400 AT5G35550.2 39.691 194 95 4 43 229 48 226 8.44e-33 122
Msa0183400 AT3G60460.1 51.402 107 51 1 9 114 8 114 4.72e-32 121
Msa0183400 AT1G66390.1 56.604 106 46 0 10 115 6 111 7.18e-32 119
Msa0183400 AT1G25340.2 49.565 115 53 1 13 127 19 128 8.53e-32 120
Msa0183400 AT1G25340.3 49.565 115 53 1 13 127 19 128 1.45e-31 120
Msa0183400 AT5G49620.1 54.369 103 47 0 12 114 26 128 3.39e-31 119
Msa0183400 AT5G14750.3 68.116 69 22 0 48 116 18 86 8.60e-31 114
Msa0183400 AT3G47600.2 68.919 74 23 0 45 118 39 112 5.59e-30 116
Msa0183400 AT1G18960.1 46.154 117 58 3 14 129 10 122 3.46e-29 114
Msa0183400 AT3G46130.3 60.526 76 30 0 44 119 9 84 8.69e-29 110
Msa0183400 AT3G46130.4 61.333 75 29 0 45 119 20 94 2.96e-28 109
Msa0183400 AT5G59780.2 61.333 75 29 0 45 119 20 94 3.89e-28 108
Msa0183400 AT5G40350.2 57.895 76 32 0 45 120 5 80 5.11e-28 107
Msa0183400 AT5G02320.3 47.863 117 58 2 1 116 54 168 1.20e-27 112
Msa0183400 AT5G49620.2 47.863 117 47 1 12 114 26 142 1.32e-27 109
Msa0183400 AT1G22640.3 58.228 79 31 1 58 136 1 77 1.45e-27 106
Msa0183400 AT5G02320.1 50.000 110 52 2 8 116 121 228 1.48e-27 112
Msa0183400 AT5G02320.2 50.000 110 52 2 8 116 121 228 1.48e-27 112
Msa0183400 AT3G27810.2 47.368 95 45 1 45 134 4 98 4.49e-27 104
Msa0183400 AT3G27785.1 44.444 108 57 2 9 115 184 289 4.90e-27 110
Msa0183400 AT4G18770.1 41.964 112 62 2 9 119 212 321 2.70e-26 107
Msa0183400 AT1G71030.2 58.442 77 32 0 51 127 5 81 3.64e-26 102
Msa0183400 AT1G71030.1 58.442 77 32 0 51 127 19 95 5.12e-26 102
Msa0183400 AT3G53200.2 45.690 116 61 1 45 160 9 122 5.64e-26 102
Msa0183400 AT3G09370.2 47.273 110 55 2 7 115 128 235 2.18e-25 106
Msa0183400 AT3G09370.1 47.273 110 55 2 7 115 123 230 2.31e-25 106
Msa0183400 AT3G09370.3 47.273 110 55 2 7 115 136 243 4.16e-25 105
Msa0183400 AT2G39880.1 49.533 107 51 2 14 119 50 154 4.58e-25 103
Msa0183400 AT1G69560.1 37.984 129 77 2 9 136 102 228 6.43e-25 102
Msa0183400 AT5G67300.1 48.544 103 50 2 14 115 6 106 6.81e-25 102
Msa0183400 AT1G69560.2 37.984 129 77 2 9 136 118 244 9.64e-25 102
Msa0183400 AT5G58850.1 44.037 109 58 2 12 119 103 209 1.13e-24 103
Msa0183400 AT5G11050.1 33.831 201 121 6 14 211 105 296 1.24e-24 103
Msa0183400 AT4G32730.1 44.545 110 58 2 8 116 81 188 3.26e-24 103
Msa0183400 AT4G32730.5 44.545 110 58 2 8 116 81 188 3.46e-24 103
Msa0183400 AT4G32730.4 44.545 110 58 2 8 116 81 188 3.46e-24 103
Msa0183400 AT4G32730.3 44.545 110 58 2 8 116 81 188 3.46e-24 103
Msa0183400 AT4G32730.2 44.545 110 58 2 8 116 81 188 3.46e-24 103
Msa0183400 AT3G55730.1 50.485 103 48 2 14 115 56 156 3.49e-24 101
Msa0183400 AT5G11510.3 44.545 110 58 2 8 116 75 182 3.87e-24 103
Msa0183400 AT5G11510.1 44.545 110 58 2 8 116 75 182 3.87e-24 103
Msa0183400 AT5G11510.4 44.545 110 58 2 8 116 75 182 3.87e-24 103
Msa0183400 AT1G66380.3 59.740 77 31 0 39 115 2 78 4.08e-24 94.7
Msa0183400 AT5G11510.2 44.545 110 58 2 8 116 75 182 5.24e-24 102
Msa0183400 AT5G11510.5 44.545 110 58 2 8 116 75 182 5.52e-24 102
Msa0183400 AT1G17950.1 33.708 178 94 6 14 184 5 165 6.05e-24 98.6
Msa0183400 AT5G40360.1 38.679 106 64 1 9 114 153 257 6.89e-24 100
Msa0183400 AT3G09230.1 41.379 145 75 5 14 155 55 192 8.49e-24 100
Msa0183400 AT4G37260.1 48.148 108 53 2 14 120 13 118 1.43e-23 99.0
Msa0183400 AT1G26780.1 43.810 105 56 2 12 115 96 198 1.67e-23 97.8
Msa0183400 AT3G50060.1 48.544 103 50 2 14 115 6 106 2.43e-23 97.8
Msa0183400 AT2G23290.1 50.485 103 48 2 14 115 13 113 3.02e-23 97.8
Msa0183400 AT1G26780.2 43.810 105 56 2 12 115 96 198 3.72e-23 98.2
Msa0183400 AT3G23250.2 45.690 116 52 4 58 170 1 108 4.29e-23 95.5
Msa0183400 AT2G25230.1 36.429 140 76 4 9 137 21 158 1.25e-22 94.4
Msa0183400 AT5G14750.4 62.712 59 22 0 58 116 1 59 1.11e-21 89.4
Msa0183400 AT5G14750.2 62.712 59 22 0 58 116 1 59 1.11e-21 89.4
Msa0183400 AT3G29020.1 32.432 148 94 3 14 160 65 207 2.49e-21 90.9
Msa0183400 AT3G29020.2 39.252 107 62 2 14 119 67 171 3.65e-21 92.0
Msa0183400 AT5G17800.1 41.176 102 59 1 14 115 93 193 8.83e-21 91.3
Msa0183400 AT1G73410.1 42.718 103 56 2 14 115 6 106 1.16e-20 89.4
Msa0183400 AT1G66380.2 56.250 80 35 0 10 89 6 85 2.79e-20 84.7
Msa0183400 AT1G73410.2 42.718 103 56 2 14 115 6 106 3.37e-20 87.0
Msa0183400 AT4G33450.1 38.655 119 67 3 1 115 3 119 1.85e-19 86.3
Msa0183400 AT4G00540.2 42.478 113 59 3 8 116 97 207 7.87e-19 86.7
Msa0183400 AT4G00540.1 42.478 113 59 3 8 116 95 205 1.53e-18 85.9
Msa0183400 AT2G37630.1 41.489 94 53 1 17 108 7 100 4.55e-18 84.0
Msa0183400 AT5G61420.1 59.322 59 24 0 81 139 2 60 5.99e-18 82.8
Msa0183400 AT5G40430.1 35.398 113 69 3 9 120 49 158 1.02e-17 81.6
Msa0183400 AT2G02820.3 35.294 119 75 2 4 121 19 136 8.22e-16 77.4
Msa0183400 AT2G02820.1 35.294 119 75 2 4 121 19 136 8.58e-16 77.8
Msa0183400 AT2G02820.2 35.294 119 75 2 4 121 19 136 1.09e-15 77.8
Msa0183400 AT5G39700.1 35.135 111 71 1 9 119 51 160 1.61e-15 73.9
Msa0183400 AT5G15310.3 40.741 108 51 3 88 190 9 108 6.40e-15 73.6
Msa0183400 AT4G25560.2 62.000 50 19 0 69 118 1 50 8.59e-15 72.4
Msa0183400 AT1G14350.2 35.238 105 67 1 17 121 28 131 1.43e-14 74.3
Msa0183400 AT1G14350.1 35.238 105 67 1 17 121 28 131 1.43e-14 74.3
Msa0183400 AT1G74430.2 59.615 52 21 0 77 128 8 59 2.62e-14 70.9
Msa0183400 AT4G28110.2 63.415 41 15 0 88 128 4 44 5.49e-14 70.1
Msa0183400 AT1G22640.2 59.184 49 18 1 88 136 16 62 9.19e-14 68.9
Msa0183400 AT5G14340.2 64.286 42 15 0 88 129 10 51 7.45e-13 66.6
Msa0183400 AT3G18100.1 29.078 141 90 3 13 149 545 679 1.01e-12 69.3
Msa0183400 AT3G18100.3 29.078 141 90 3 13 149 497 631 1.11e-12 68.9
Msa0183400 AT3G18100.4 29.078 141 90 3 13 149 384 518 1.19e-12 68.9
Msa0183400 AT3G18100.2 29.078 141 90 3 13 149 332 466 1.45e-12 68.6
Msa0183400 AT3G46130.2 55.319 47 21 0 73 119 4 50 2.25e-12 65.1
Msa0183400 AT5G59780.1 55.319 47 21 0 73 119 4 50 2.47e-12 64.7
Msa0183400 AT3G28910.2 58.491 53 20 1 77 129 1 51 1.47e-11 63.9
Msa0183400 AT1G74650.3 65.854 41 14 0 77 117 1 41 3.57e-11 62.8

Find 52 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAAGGAGAACTAAATT+TGG 0.229289 1_4:+72316094 None:intergenic
AAGAGCTTCTTATCTTCTTC+AGG 0.255579 1_4:+72317208 None:intergenic
TTCAATTACATAACCATGTT+TGG 0.311883 1_4:-72317187 Msa0183400:CDS
TGAGGTGGCATTATCGTTGA+TGG 0.336525 1_4:+72316356 None:intergenic
TTAAGATTACCAGCTAGTTT+AGG 0.344561 1_4:+72317142 None:intergenic
TTCCAAATTTAGTTCTCCTT+TGG 0.366592 1_4:-72316096 Msa0183400:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.380038 1_4:-72316631 Msa0183400:intron
AAGGCATTGAAGAGAAGAAT+TGG 0.404191 1_4:+72316156 None:intergenic
TTGTGACTTGTGAGGACAAT+AGG 0.414259 1_4:+72317287 None:intergenic
AAGTGATTCATTATTGATCA+AGG 0.424353 1_4:+72316400 None:intergenic
TGAGATGGATAAACTATTTG+AGG 0.450225 1_4:-72316709 Msa0183400:CDS
ATCAAGGGTTTATGTGTAGC+TGG 0.461421 1_4:+72316416 None:intergenic
CATCAACAAGACAAATTCAA+TGG 0.466188 1_4:-72315931 Msa0183400:CDS
TTCACTTCAAACTGCAACAA+AGG 0.467959 1_4:+72315978 None:intergenic
ATCTCATTATCTGTTCTCCC+TGG 0.474483 1_4:+72316494 None:intergenic
TACATAACCATGTTTGGTGT+TGG 0.474556 1_4:-72317181 Msa0183400:CDS
TGGATAAACTATTTGAGGCC+TGG 0.498244 1_4:-72316704 Msa0183400:CDS
CAAATTGCATCACAATTACC+AGG 0.502920 1_4:-72316512 Msa0183400:CDS
TGACAGCGATGTTAAAGGAT+AGG 0.507003 1_4:+72315899 None:intergenic
CAATAATGAATCACTTGTAA+AGG 0.507616 1_4:-72316393 Msa0183400:CDS
AGTGATTCATTATTGATCAA+GGG 0.510521 1_4:+72316401 None:intergenic
CCATGTTTGGTGTTGGATGT+TGG 0.512330 1_4:-72317174 Msa0183400:CDS
TGAAAATTACAATAAGCTGT+TGG 0.514835 1_4:-72316003 Msa0183400:CDS
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 1_4:-72317151 Msa0183400:intron
AGAGCTTCTTATCTTCTTCA+GGG 0.522102 1_4:+72317209 None:intergenic
TGTTCAAATTGTAATTGACT+TGG 0.522549 1_4:+72316182 None:intergenic
TTGAGGCCTGGTTTGAAGAG+AGG 0.523450 1_4:-72316692 Msa0183400:CDS
GATTAATGAAAATGCCTCAT+GGG 0.535807 1_4:-72316030 Msa0183400:CDS
ATGCTTAAATTGTAGTGCAA+TGG 0.540486 1_4:+72316227 None:intergenic
CCAACATCCAACACCAAACA+TGG 0.541756 1_4:+72317174 None:intergenic
GTCAATCTTCATGAAGCACT+TGG 0.545016 1_4:-72316638 Msa0183400:CDS
AATGGATCAAAATCAAATGT+TGG 0.545963 1_4:+72316245 None:intergenic
TATGAGTTGCAGGGTTGCAA+AGG 0.546405 1_4:-72316751 Msa0183400:intron
AATTGTAATTGACTTGGCTG+AGG 0.553273 1_4:+72316188 None:intergenic
TGATTAATGAAAATGCCTCA+TGG 0.558714 1_4:-72316031 Msa0183400:CDS
ATCACTTGTAAAGGAAGAGA+AGG 0.569531 1_4:-72316384 Msa0183400:CDS
AATGAAAATGCCTCATGGGA+AGG 0.570813 1_4:-72316026 Msa0183400:CDS
TGTGTAGCTAAAGTCCTTTG+AGG 0.574260 1_4:+72316338 None:intergenic
AACATTCCTCTCTTCAAACC+AGG 0.578887 1_4:+72316686 None:intergenic
AGGAATGTTCTCAAAACAAG+AGG 0.587388 1_4:-72316672 Msa0183400:CDS
CAACGATAATGCCACCTCAA+AGG 0.593092 1_4:-72316352 Msa0183400:CDS
GAAAGAGCTGTAGATTGAGA+TGG 0.600654 1_4:-72316724 Msa0183400:CDS
TGCTTCTGAATATTCATGTG+AGG 0.611193 1_4:+72316301 None:intergenic
GAGCTTCTTATCTTCTTCAG+GGG 0.611549 1_4:+72317210 None:intergenic
TCACTTTCAATATTCACCAA+AGG 0.621840 1_4:+72316080 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 1_4:-72316446 Msa0183400:CDS
AGAAGAAACTAATGAAACAA+GGG 0.641105 1_4:-72316445 Msa0183400:CDS
GTTGCAGGGTTGCAAAGGTG+TGG 0.656350 1_4:-72316746 Msa0183400:intron
GTAGCTAAAGTCCTTTGAGG+TGG 0.669433 1_4:+72316341 None:intergenic
TTGTCTGAACTATTTAGACA+AGG 0.673798 1_4:+72316137 None:intergenic
AAATTGCATCACAATTACCA+GGG 0.713478 1_4:-72316511 Msa0183400:CDS
ACTCATGTTTGTGACTTGTG+AGG 0.732197 1_4:+72317279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAAAATTATATATGCA+TGG + chr1_4:72316425-72316444 None:intergenic 15.0%
!!! TTAATTAATAATCACTTTTG+AGG + chr1_4:72316634-72316653 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_4:72316710-72316729 Msa0183400:CDS 15.0%
!! TCATAAAAATTATATATGCA+TGG + chr1_4:72316425-72316444 None:intergenic 15.0%
!!! TTAATTAATAATCACTTTTG+AGG + chr1_4:72316634-72316653 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_4:72316710-72316729 Msa0183400:CDS 15.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_4:72315950-72315969 Msa0183400:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_4:72315957-72315976 Msa0183400:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_4:72316124-72316143 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_4:72316125-72316144 None:intergenic 20.0%
!! AAAGTAAAACAGATATATGT+TGG + chr1_4:72316341-72316360 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_4:72316406-72316425 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_4:72316419-72316438 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_4:72316430-72316449 Msa0183400:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_4:72316431-72316450 Msa0183400:CDS 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_4:72315950-72315969 Msa0183400:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_4:72315957-72315976 Msa0183400:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_4:72316124-72316143 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_4:72316125-72316144 None:intergenic 20.0%
!! AAAGTAAAACAGATATATGT+TGG + chr1_4:72316341-72316360 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_4:72316406-72316425 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_4:72316419-72316438 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_4:72316430-72316449 Msa0183400:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_4:72316431-72316450 Msa0183400:CDS 20.0%
!!! TAGTTTTTGCTTTAAACAAC+AGG + chr1_4:72315945-72315964 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr1_4:72316004-72316023 Msa0183400:CDS 25.0%
! ATTATGTTCAAACATGTTGA+TGG - chr1_4:72316595-72316614 Msa0183400:intron 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_4:72316745-72316764 Msa0183400:intron 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_4:72316746-72316765 Msa0183400:intron 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_4:72316793-72316812 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_4:72316794-72316813 None:intergenic 25.0%
! CAATAATGAATCACTTGTAA+AGG - chr1_4:72316798-72316817 Msa0183400:intron 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_4:72316949-72316968 None:intergenic 25.0%
! TGTTCAAATTGTAATTGACT+TGG + chr1_4:72317012-72317031 None:intergenic 25.0%
! TGAAAATTACAATAAGCTGT+TGG - chr1_4:72317188-72317207 Msa0183400:CDS 25.0%
!!! TAGTTTTTGCTTTAAACAAC+AGG + chr1_4:72315945-72315964 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr1_4:72316004-72316023 Msa0183400:CDS 25.0%
! ATTATGTTCAAACATGTTGA+TGG - chr1_4:72316595-72316614 Msa0183400:intron 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_4:72316745-72316764 Msa0183400:intron 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_4:72316746-72316765 Msa0183400:intron 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_4:72316793-72316812 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_4:72316794-72316813 None:intergenic 25.0%
! CAATAATGAATCACTTGTAA+AGG - chr1_4:72316798-72316817 Msa0183400:intron 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_4:72316949-72316968 None:intergenic 25.0%
! TGTTCAAATTGTAATTGACT+TGG + chr1_4:72317012-72317031 None:intergenic 25.0%
! TGAAAATTACAATAAGCTGT+TGG - chr1_4:72317188-72317207 Msa0183400:CDS 25.0%
AGGAAAAAAAAGGACACAAA+TGG + chr1_4:72315887-72315906 None:intergenic 30.0%
TGAGGACAATAGGAAAAAAA+AGG + chr1_4:72315897-72315916 None:intergenic 30.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_4:72316052-72316071 None:intergenic 30.0%
ATGTCATACATGCATGTTTA+TGG + chr1_4:72316087-72316106 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_4:72316482-72316501 Msa0183400:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_4:72316650-72316669 Msa0183400:CDS 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_4:72316680-72316699 Msa0183400:CDS 30.0%
ATGCTTAAATTGTAGTGCAA+TGG + chr1_4:72316967-72316986 None:intergenic 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_4:72317057-72317076 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_4:72317095-72317114 Msa0183400:intron 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_4:72317114-72317133 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_4:72317160-72317179 Msa0183400:CDS 30.0%
GATTAATGAAAATGCCTCAT+GGG - chr1_4:72317161-72317180 Msa0183400:CDS 30.0%
CATCAACAAGACAAATTCAA+TGG - chr1_4:72317260-72317279 Msa0183400:CDS 30.0%
AGGAAAAAAAAGGACACAAA+TGG + chr1_4:72315887-72315906 None:intergenic 30.0%
TGAGGACAATAGGAAAAAAA+AGG + chr1_4:72315897-72315916 None:intergenic 30.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_4:72316052-72316071 None:intergenic 30.0%
ATGTCATACATGCATGTTTA+TGG + chr1_4:72316087-72316106 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_4:72316482-72316501 Msa0183400:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_4:72316650-72316669 Msa0183400:CDS 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_4:72316680-72316699 Msa0183400:CDS 30.0%
ATGCTTAAATTGTAGTGCAA+TGG + chr1_4:72316967-72316986 None:intergenic 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_4:72317057-72317076 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_4:72317095-72317114 Msa0183400:intron 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_4:72317114-72317133 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_4:72317160-72317179 Msa0183400:CDS 30.0%
GATTAATGAAAATGCCTCAT+GGG - chr1_4:72317161-72317180 Msa0183400:CDS 30.0%
CATCAACAAGACAAATTCAA+TGG - chr1_4:72317260-72317279 Msa0183400:CDS 30.0%
AGAGCTTCTTATCTTCTTCA+GGG + chr1_4:72315985-72316004 None:intergenic 35.0%
AAGAGCTTCTTATCTTCTTC+AGG + chr1_4:72315986-72316005 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_4:72316010-72316029 Msa0183400:CDS 35.0%
! TGAGAATAGGATGAAAGTGT+GGG + chr1_4:72316211-72316230 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_4:72316519-72316538 Msa0183400:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_4:72316560-72316579 Msa0183400:intron 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_4:72316679-72316698 Msa0183400:CDS 35.0%
ATCACTTGTAAAGGAAGAGA+AGG - chr1_4:72316807-72316826 Msa0183400:intron 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_4:72316893-72316912 None:intergenic 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_4:72317006-72317025 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_4:72317038-72317057 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_4:72317100-72317119 None:intergenic 35.0%
TTCACTTCAAACTGCAACAA+AGG + chr1_4:72317216-72317235 None:intergenic 35.0%
! TCTTTTGACAGCGATGTTAA+AGG + chr1_4:72317300-72317319 None:intergenic 35.0%
AGAGCTTCTTATCTTCTTCA+GGG + chr1_4:72315985-72316004 None:intergenic 35.0%
AAGAGCTTCTTATCTTCTTC+AGG + chr1_4:72315986-72316005 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_4:72316010-72316029 Msa0183400:CDS 35.0%
! TGAGAATAGGATGAAAGTGT+GGG + chr1_4:72316211-72316230 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_4:72316519-72316538 Msa0183400:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_4:72316560-72316579 Msa0183400:intron 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_4:72316679-72316698 Msa0183400:CDS 35.0%
ATCACTTGTAAAGGAAGAGA+AGG - chr1_4:72316807-72316826 Msa0183400:intron 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_4:72316893-72316912 None:intergenic 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_4:72317006-72317025 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_4:72317038-72317057 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_4:72317100-72317119 None:intergenic 35.0%
TTCACTTCAAACTGCAACAA+AGG + chr1_4:72317216-72317235 None:intergenic 35.0%
! TCTTTTGACAGCGATGTTAA+AGG + chr1_4:72317300-72317319 None:intergenic 35.0%
! TTGTGACTTGTGAGGACAAT+AGG + chr1_4:72315907-72315926 None:intergenic 40.0%
! ACTCATGTTTGTGACTTGTG+AGG + chr1_4:72315915-72315934 None:intergenic 40.0%
GAGCTTCTTATCTTCTTCAG+GGG + chr1_4:72315984-72316003 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_4:72316040-72316059 Msa0183400:CDS 40.0%
GTGAGAATAGGATGAAAGTG+TGG + chr1_4:72316212-72316231 None:intergenic 40.0%
GAGAGAGTGAAAGTGAGAAT+AGG + chr1_4:72316224-72316243 None:intergenic 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_4:72316467-72316486 Msa0183400:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_4:72316487-72316506 Msa0183400:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_4:72316508-72316527 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_4:72316553-72316572 Msa0183400:intron 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_4:72316653-72316672 Msa0183400:CDS 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_4:72316654-72316673 Msa0183400:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_4:72316700-72316719 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_4:72316778-72316797 None:intergenic 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_4:72316856-72316875 None:intergenic 40.0%
AATGAAAATGCCTCATGGGA+AGG - chr1_4:72317165-72317184 Msa0183400:CDS 40.0%
! GTAATTTTCACCTTCCCATG+AGG + chr1_4:72317178-72317197 None:intergenic 40.0%
TGACAGCGATGTTAAAGGAT+AGG + chr1_4:72317295-72317314 None:intergenic 40.0%
! TTGTGACTTGTGAGGACAAT+AGG + chr1_4:72315907-72315926 None:intergenic 40.0%
! ACTCATGTTTGTGACTTGTG+AGG + chr1_4:72315915-72315934 None:intergenic 40.0%
GAGCTTCTTATCTTCTTCAG+GGG + chr1_4:72315984-72316003 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_4:72316040-72316059 Msa0183400:CDS 40.0%
GTGAGAATAGGATGAAAGTG+TGG + chr1_4:72316212-72316231 None:intergenic 40.0%
GAGAGAGTGAAAGTGAGAAT+AGG + chr1_4:72316224-72316243 None:intergenic 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_4:72316467-72316486 Msa0183400:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_4:72316487-72316506 Msa0183400:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_4:72316508-72316527 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_4:72316553-72316572 Msa0183400:intron 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_4:72316653-72316672 Msa0183400:CDS 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_4:72316654-72316673 Msa0183400:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_4:72316700-72316719 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_4:72316778-72316797 None:intergenic 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_4:72316856-72316875 None:intergenic 40.0%
AATGAAAATGCCTCATGGGA+AGG - chr1_4:72317165-72317184 Msa0183400:CDS 40.0%
! GTAATTTTCACCTTCCCATG+AGG + chr1_4:72317178-72317197 None:intergenic 40.0%
TGACAGCGATGTTAAAGGAT+AGG + chr1_4:72317295-72317314 None:intergenic 40.0%
CCAACATCCAACACCAAACA+TGG + chr1_4:72316020-72316039 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_4:72316017-72316036 Msa0183400:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_4:72316440-72316459 Msa0183400:CDS 45.0%
TGAGGTGGCATTATCGTTGA+TGG + chr1_4:72316838-72316857 None:intergenic 45.0%
CAACGATAATGCCACCTCAA+AGG - chr1_4:72316839-72316858 Msa0183400:intron 45.0%
! GTAGCTAAAGTCCTTTGAGG+TGG + chr1_4:72316853-72316872 None:intergenic 45.0%
CCAACATCCAACACCAAACA+TGG + chr1_4:72316020-72316039 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_4:72316017-72316036 Msa0183400:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_4:72316440-72316459 Msa0183400:CDS 45.0%
TGAGGTGGCATTATCGTTGA+TGG + chr1_4:72316838-72316857 None:intergenic 45.0%
CAACGATAATGCCACCTCAA+AGG - chr1_4:72316839-72316858 Msa0183400:intron 45.0%
! GTAGCTAAAGTCCTTTGAGG+TGG + chr1_4:72316853-72316872 None:intergenic 45.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_4:72316499-72316518 Msa0183400:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_4:72316669-72316688 None:intergenic 50.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_4:72316499-72316518 Msa0183400:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_4:72316669-72316688 None:intergenic 50.0%
GTTGCAGGGTTGCAAAGGTG+TGG - chr1_4:72316445-72316464 Msa0183400:CDS 55.0%
GTTGCAGGGTTGCAAAGGTG+TGG - chr1_4:72316445-72316464 Msa0183400:CDS 55.0%
TTCTCCCGCGCGTTGCAGCA+CGG - chr1_4:72316266-72316285 Msa0183400:CDS 65.0%
TTCTCCCGCGCGTTGCAGCA+CGG - chr1_4:72316266-72316285 Msa0183400:CDS 65.0%
ACCACCGTGCTGCAACGCGC+GGG + chr1_4:72316273-72316292 None:intergenic 70.0%
GACCACCGTGCTGCAACGCG+CGG + chr1_4:72316274-72316293 None:intergenic 70.0%
ACCACCGTGCTGCAACGCGC+GGG + chr1_4:72316273-72316292 None:intergenic 70.0%
GACCACCGTGCTGCAACGCG+CGG + chr1_4:72316274-72316293 None:intergenic 70.0%
TCCCGCGCGTTGCAGCACGG+TGG - chr1_4:72316269-72316288 Msa0183400:CDS 75.0%
TCCCGCGCGTTGCAGCACGG+TGG - chr1_4:72316269-72316288 Msa0183400:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72315872 72317341 72315872 ID=Msa0183400;Name=Msa0183400
chr1_4 mRNA 72315872 72317341 72315872 ID=Msa0183400-mRNA-1;Parent=Msa0183400;Name=Msa0183400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=57|1|0.66|1|1|1|3|0|311
chr1_4 exon 72315872 72316541 72315872 ID=Msa0183400-mRNA-1:exon:24433;Parent=Msa0183400-mRNA-1
chr1_4 exon 72316632 72316761 72316632 ID=Msa0183400-mRNA-1:exon:24432;Parent=Msa0183400-mRNA-1
chr1_4 exon 72317152 72317341 72317152 ID=Msa0183400-mRNA-1:exon:24431;Parent=Msa0183400-mRNA-1
chr1_4 five_prime_UTR 72317285 72317341 72317285 ID=Msa0183400-mRNA-1:five_prime_utr;Parent=Msa0183400-mRNA-1
chr1_4 CDS 72317152 72317284 72317152 ID=Msa0183400-mRNA-1:cds;Parent=Msa0183400-mRNA-1
chr1_4 CDS 72316632 72316761 72316632 ID=Msa0183400-mRNA-1:cds;Parent=Msa0183400-mRNA-1
chr1_4 CDS 72315872 72316541 72315872 ID=Msa0183400-mRNA-1:cds;Parent=Msa0183400-mRNA-1
Gene Sequence

>Msa0183400

ATGAGTCGTCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATAAGAAGCTCTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATTTGAGGCCTGGTTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATCGTCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCATCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAACCCTTGATCAATAATGAATCACTTGTAAAGGAAGAGAAGGAAAAACCATCAACGATAATGCCACCTCAAAGGACTTTAGCTACACACACAATGCTAGAATCCTCACATGAATATTCAGAAGCACTTCTAATGAGTGATTCAATTAATCACTATAAGCCAACATTTGATTTTGATCCATTGCACTACAATTTAAGCATGAGTAATTATTATCAGCCTCAGCCAAGTCAATTACAATTTGAACAGAACCAATTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGACAACATCAACAAGAACTCATTTTCCAAATTTAGTTCTCCTTTGGTGAATATTGAAAGTGATCGTGATTATTATCAAATGAGCAACATGATTAATGAAAATGCCTCATGGGAAGGTGAAAATTACAATAAGCTGTTGGATCCTTTGTTGCAGTTTGAAGTGAATAATGCAGTAAAATGTGAAGAATACATCAACAAGACAAATTCAATGGATTTCAGTACCTATCCTTTAACATCGCTGTCAAAAGATCTAAGTAATATTGAAGCTAAT
Protein sequence

>Msa0183400

MSRHSCCLKQKLRKGLWSPEEDKKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPGLKRGMFSKQEEDLIVNLHEALGNRWAQIASQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPLINNESLVKEEKEKPSTIMPPQRTLATHTMLESSHEYSEALLMSDSINHYKPTFDFDPLHYNLSMSNYYQPQPSQLQFEQNQFFSSMPCLNSSDNINKNSFSKFSSPLVNIESDRDYYQMSNMINENASWEGENYNKLLDPLLQFEVNNAVKCEEYINKTNSMDFSTYPLTSLSKDLSNIEAN