Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189510 | XP_003593111.1 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189510 | sp|Q75HX5|TLP8_ORYSJ | 76.286 | 447 | 84 | 10 | 1 | 427 | 1 | 445 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189510 | G7IL74 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0189510 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189510 | MtrunA17_Chr2g0278511 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 886 |
| Msa0189510 | MtrunA17_Chr1g0201891 | 80.230 | 435 | 74 | 5 | 1 | 427 | 1 | 431 | 0.0 | 692 |
| Msa0189510 | MtrunA17_Chr5g0404321 | 55.300 | 434 | 169 | 12 | 1 | 427 | 1 | 416 | 8.23e-156 | 446 |
| Msa0189510 | MtrunA17_Chr2g0286441 | 58.005 | 381 | 137 | 6 | 49 | 427 | 34 | 393 | 1.07e-154 | 443 |
| Msa0189510 | MtrunA17_Chr1g0196071 | 53.241 | 432 | 167 | 10 | 1 | 427 | 1 | 402 | 5.91e-154 | 441 |
| Msa0189510 | MtrunA17_Chr8g0373001 | 52.791 | 430 | 182 | 8 | 1 | 427 | 1 | 412 | 6.86e-149 | 429 |
| Msa0189510 | MtrunA17_Chr1g0155301 | 49.777 | 448 | 178 | 9 | 1 | 427 | 1 | 422 | 1.26e-141 | 410 |
| Msa0189510 | MtrunA17_Chr2g0315641 | 48.670 | 376 | 145 | 9 | 54 | 427 | 42 | 371 | 1.18e-116 | 345 |
| Msa0189510 | MtrunA17_Chr2g0315651 | 42.632 | 380 | 163 | 11 | 54 | 427 | 37 | 367 | 1.03e-92 | 284 |
| Msa0189510 | MtrunA17_Chr8g0373361 | 42.791 | 430 | 189 | 15 | 15 | 420 | 9 | 405 | 7.98e-92 | 283 |
| Msa0189510 | MtrunA17_Chr8g0373331 | 36.449 | 428 | 184 | 13 | 1 | 420 | 1 | 348 | 1.20e-74 | 237 |
| Msa0189510 | MtrunA17_Chr1g0156151 | 46.083 | 217 | 105 | 5 | 1 | 211 | 1 | 211 | 4.59e-53 | 177 |
| Msa0189510 | MtrunA17_Chr8g0373351 | 33.679 | 386 | 128 | 11 | 49 | 419 | 14 | 286 | 2.25e-49 | 169 |
| Msa0189510 | MtrunA17_Chr8g0373341 | 38.767 | 227 | 89 | 7 | 1 | 207 | 1 | 197 | 8.97e-30 | 117 |
| Msa0189510 | MtrunA17_Chr8g0373341 | 45.455 | 99 | 47 | 2 | 320 | 417 | 228 | 320 | 7.59e-17 | 81.3 |
| Msa0189510 | MtrunA17_Chr3g0091401 | 40.404 | 99 | 52 | 2 | 96 | 194 | 8 | 99 | 4.17e-15 | 71.2 |
| Msa0189510 | MtrunA17_Chr2g0334041 | 40.909 | 110 | 44 | 5 | 323 | 426 | 265 | 359 | 3.74e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189510 | AT1G25280.1 | 73.392 | 451 | 90 | 14 | 1 | 427 | 1 | 445 | 0.0 | 612 |
| Msa0189510 | AT1G76900.2 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0189510 | AT1G76900.1 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0189510 | AT1G76900.3 | 70.130 | 462 | 96 | 11 | 1 | 427 | 1 | 455 | 0.0 | 609 |
| Msa0189510 | AT1G43640.1 | 68.552 | 442 | 111 | 7 | 1 | 427 | 1 | 429 | 0.0 | 605 |
| Msa0189510 | AT1G43640.2 | 70.400 | 375 | 86 | 5 | 66 | 427 | 1 | 363 | 0.0 | 535 |
| Msa0189510 | AT2G47900.2 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 3.77e-167 | 475 |
| Msa0189510 | AT2G47900.1 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 3.77e-167 | 475 |
| Msa0189510 | AT2G47900.3 | 54.965 | 433 | 163 | 8 | 1 | 427 | 1 | 407 | 1.13e-165 | 472 |
| Msa0189510 | AT2G18280.2 | 52.995 | 434 | 156 | 9 | 1 | 427 | 1 | 393 | 1.42e-146 | 422 |
| Msa0189510 | AT2G18280.1 | 52.995 | 434 | 156 | 9 | 1 | 427 | 1 | 393 | 1.42e-146 | 422 |
| Msa0189510 | AT1G47270.3 | 50.230 | 434 | 163 | 8 | 1 | 427 | 1 | 388 | 9.23e-140 | 405 |
| Msa0189510 | AT1G47270.1 | 50.230 | 434 | 163 | 8 | 1 | 427 | 26 | 413 | 1.23e-139 | 405 |
| Msa0189510 | AT1G47270.2 | 50.230 | 434 | 163 | 8 | 1 | 427 | 25 | 412 | 1.27e-139 | 405 |
| Msa0189510 | AT3G06380.1 | 51.979 | 379 | 146 | 8 | 54 | 427 | 33 | 380 | 3.54e-128 | 375 |
| Msa0189510 | AT5G18680.1 | 49.148 | 411 | 162 | 11 | 32 | 427 | 11 | 389 | 1.78e-125 | 369 |
| Msa0189510 | AT1G25280.3 | 73.063 | 271 | 52 | 11 | 174 | 427 | 1 | 267 | 8.91e-124 | 360 |
| Msa0189510 | AT1G25280.2 | 73.063 | 271 | 52 | 11 | 174 | 427 | 1 | 267 | 8.91e-124 | 360 |
| Msa0189510 | AT1G53320.1 | 48.294 | 381 | 151 | 8 | 51 | 427 | 41 | 379 | 1.06e-115 | 343 |
| Msa0189510 | AT5G18680.2 | 51.703 | 323 | 116 | 9 | 113 | 427 | 7 | 297 | 7.79e-101 | 302 |
| Msa0189510 | AT3G06380.2 | 51.111 | 315 | 119 | 7 | 117 | 427 | 5 | 288 | 7.08e-100 | 300 |
| Msa0189510 | AT1G61940.2 | 56.977 | 86 | 37 | 0 | 57 | 142 | 1 | 86 | 8.86e-31 | 119 |
| Msa0189510 | AT1G61940.1 | 60.656 | 61 | 24 | 0 | 57 | 117 | 1 | 61 | 3.16e-19 | 87.0 |
Find 147 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTAGATCTATTTATTC+TGG | 0.101270 | 2_1:-4896660 | Msa0189510:five_prime_UTR |
| GTTTGATTAGTTCACTTTAA+AGG | 0.174467 | 2_1:+4892680 | None:intergenic |
| TTGTACCAACAAACTATTAT+AGG | 0.212354 | 2_1:-4892454 | Msa0189510:three_prime_UTR |
| TATGTTGTAACCTATGTATT+AGG | 0.212506 | 2_1:-4892554 | Msa0189510:three_prime_UTR |
| GTGATCTAGCTTAGGAGTTT+TGG | 0.235422 | 2_1:-4896293 | Msa0189510:five_prime_UTR |
| TACACCAGATCAAACTTTCT+TGG | 0.237446 | 2_1:-4893424 | Msa0189510:intron |
| GCAGCTTTGTTGGTTGAAAA+TGG | 0.267345 | 2_1:-4894515 | Msa0189510:intron |
| TATTCTTATTACTAGTGTTA+TGG | 0.271731 | 2_1:-4892613 | Msa0189510:three_prime_UTR |
| ATTACTAGTGTTATGGGATT+AGG | 0.272229 | 2_1:-4892606 | Msa0189510:three_prime_UTR |
| CGTGACGTTCGTGATAGTTT+TGG | 0.276663 | 2_1:-4895612 | Msa0189510:CDS |
| ATTCTTATTACTAGTGTTAT+GGG | 0.301351 | 2_1:-4892612 | Msa0189510:three_prime_UTR |
| CAGTCCCTGGAGGACATATA+TGG | 0.304546 | 2_1:+4893356 | None:intergenic |
| GTGCTTCTGTTTGCCAGTCT+TGG | 0.312781 | 2_1:-4895380 | Msa0189510:CDS |
| CCGGCATCAAGTGCTGAATT+TGG | 0.312965 | 2_1:+4893193 | None:intergenic |
| ATTTGCAACCAACCTGCTTC+AGG | 0.316319 | 2_1:+4895292 | None:intergenic |
| ATGTTGTAACCTATGTATTA+GGG | 0.318091 | 2_1:-4892553 | Msa0189510:three_prime_UTR |
| GCTTCCACCCAACCACCTGC+TGG | 0.321946 | 2_1:-4892896 | Msa0189510:CDS |
| ATGACATCAAATAGTAATTC+CGG | 0.334292 | 2_1:+4895459 | None:intergenic |
| GATGCCGGCGGCTCCGTTCC+TGG | 0.334908 | 2_1:-4893178 | Msa0189510:CDS |
| GCCGTCATCATCCTCATTAC+AGG | 0.338459 | 2_1:+4893039 | None:intergenic |
| ATGTTGCTGTGTTTCTTTCT+CGG | 0.344773 | 2_1:-4892508 | Msa0189510:three_prime_UTR |
| ACAAAAGAGATACTTATTCT+TGG | 0.352074 | 2_1:-4895670 | Msa0189510:five_prime_UTR |
| CAAAAGAGATACTTATTCTT+GGG | 0.392034 | 2_1:-4895669 | Msa0189510:five_prime_UTR |
| ACATATATGGGCAGAAGTGC+AGG | 0.394714 | 2_1:+4893369 | None:intergenic |
| TTCTGCAATTCGGCAAAGTT+GGG | 0.396243 | 2_1:-4892826 | Msa0189510:CDS |
| AAAGCTTGGAATGCAGATAA+AGG | 0.399095 | 2_1:+4892773 | None:intergenic |
| TTACTCGTCCCCGAAAATTA+AGG | 0.402869 | 2_1:+4892951 | None:intergenic |
| TCTCTAGATCTATTTATTCT+GGG | 0.406157 | 2_1:-4896659 | Msa0189510:intron |
| CTTCCACCCAACCACCTGCT+GGG | 0.409907 | 2_1:-4892895 | Msa0189510:CDS |
| CATATATGTCCTCCAGGGAC+TGG | 0.412842 | 2_1:-4893355 | Msa0189510:CDS |
| AGCAGAATGATAAAAGCTTT+AGG | 0.419630 | 2_1:+4896732 | None:intergenic |
| TCGGCGCCCCAGCAGGTGGT+TGG | 0.419959 | 2_1:+4892888 | None:intergenic |
| CTTCTGTTTGCCAGTCTTGG+AGG | 0.420970 | 2_1:-4895377 | Msa0189510:CDS |
| AATTACTATTTGATGTCATT+CGG | 0.424860 | 2_1:-4895455 | Msa0189510:CDS |
| GCAACTACATGCTTTCTTGA+AGG | 0.425706 | 2_1:+4895405 | None:intergenic |
| AAAGTGAACTAATCAAACTT+TGG | 0.428598 | 2_1:-4892675 | Msa0189510:three_prime_UTR |
| CTCAGTGTAGGTTGTTCTCC+TGG | 0.432833 | 2_1:+4894466 | None:intergenic |
| TTGTAATTCAAAATAGCTGC+TGG | 0.434645 | 2_1:-4895494 | Msa0189510:CDS |
| CATAACCTATAATAGTTTGT+TGG | 0.434967 | 2_1:+4892449 | None:intergenic |
| AATTCCTTCTTTCTGCTAAG+AGG | 0.435478 | 2_1:-4894490 | Msa0189510:CDS |
| TAACTCCCAGATGGGACCTT+TGG | 0.438868 | 2_1:+4893298 | None:intergenic |
| GTATCGCCAAAGGTCCCATC+TGG | 0.445185 | 2_1:-4893304 | Msa0189510:CDS |
| GATGGTGTCGGCGCCCCAGC+AGG | 0.447033 | 2_1:+4892881 | None:intergenic |
| GATAAGATTATTCTGCAATT+CGG | 0.448717 | 2_1:-4892836 | Msa0189510:CDS |
| CGGCGCCCCAGCAGGTGGTT+GGG | 0.449066 | 2_1:+4892889 | None:intergenic |
| ATTCTGCAATTCGGCAAAGT+TGG | 0.451251 | 2_1:-4892827 | Msa0189510:CDS |
| TTCTTTCTGCTAAGAGGACC+AGG | 0.458845 | 2_1:-4894484 | Msa0189510:CDS |
| GTTCCCTGTGTCCCTGAAGC+AGG | 0.461781 | 2_1:-4895304 | Msa0189510:intron |
| TAATGCAATGCATCTTCCTT+GGG | 0.462060 | 2_1:+4893227 | None:intergenic |
| AGAATAATCTTATCATGTTC+CGG | 0.463219 | 2_1:+4892845 | None:intergenic |
| CGGCTCGTCTTCCCAGTCCC+TGG | 0.463239 | 2_1:+4893343 | None:intergenic |
| TGACATCAAATAGTAATTCC+GGG | 0.465027 | 2_1:+4895460 | None:intergenic |
| CAGGGCTCAGACAAAGGAAT+AGG | 0.465192 | 2_1:+4895099 | None:intergenic |
| TGCTTTAAACCCTAATACAT+AGG | 0.469426 | 2_1:+4892544 | None:intergenic |
| TGAATTAGCTCTGGCTGTCC+AGG | 0.469795 | 2_1:+4893160 | None:intergenic |
| TATGCTACGGAAAGACATTC+CGG | 0.472706 | 2_1:+4895638 | None:intergenic |
| TCTGCCCATATATGTCCTCC+AGG | 0.473900 | 2_1:-4893361 | Msa0189510:CDS |
| TGACGGCAAGATGAGACCTT+TGG | 0.479423 | 2_1:-4893023 | Msa0189510:CDS |
| CTGCTGGGCGAACTTGCCCC+CGG | 0.484008 | 2_1:-4895478 | Msa0189510:CDS |
| GGTGCTTTGTGATCTAGCTT+AGG | 0.486239 | 2_1:-4896301 | Msa0189510:five_prime_UTR |
| CTATTCCTTTGTCTGAGCCC+TGG | 0.486417 | 2_1:-4895098 | Msa0189510:intron |
| GTAAGTTTGCCACAGAACTC+TGG | 0.486827 | 2_1:+4895327 | None:intergenic |
| GTTCCCTAGAGGACTCATTC+CGG | 0.488569 | 2_1:-4893135 | Msa0189510:CDS |
| ATAATGCAATGCATCTTCCT+TGG | 0.491165 | 2_1:+4893226 | None:intergenic |
| AAACTATTCACAAGCCAACT+TGG | 0.491824 | 2_1:+4892724 | None:intergenic |
| TTATTCTTGGGATTCTACTC+CGG | 0.494237 | 2_1:-4895657 | Msa0189510:five_prime_UTR |
| TTATCATGTTCCGGTGGTGC+TGG | 0.495403 | 2_1:+4892854 | None:intergenic |
| TTAAGCATATTGCAAAAGCT+TGG | 0.496726 | 2_1:+4892759 | None:intergenic |
| ATGATTCCGTCTCGTGGCCC+TGG | 0.498403 | 2_1:+4895164 | None:intergenic |
| TTTGCAACCAACCTGCTTCA+GGG | 0.503932 | 2_1:+4895293 | None:intergenic |
| TCTCAGCTTCATACAATACA+AGG | 0.503978 | 2_1:-4896686 | Msa0189510:five_prime_UTR |
| AACCAACCAGTACAAGCATA+TGG | 0.505142 | 2_1:+4895711 | None:intergenic |
| ATATATGTCCTCCAGGGACT+GGG | 0.505737 | 2_1:-4893354 | Msa0189510:CDS |
| AAAGTCTCATGGTTCTGTAC+AGG | 0.510601 | 2_1:-4895535 | Msa0189510:CDS |
| ACTTCGAAAATGAGATGCTC+CGG | 0.512791 | 2_1:+4893116 | None:intergenic |
| TGCTCCGGAATGAGTCCTCT+AGG | 0.516799 | 2_1:+4893131 | None:intergenic |
| GCTTACCAGGGCTCAGACAA+AGG | 0.519038 | 2_1:+4895093 | None:intergenic |
| TGGCAGCCATATGCTTGTAC+TGG | 0.521805 | 2_1:-4895717 | Msa0189510:intron |
| TATAATAGTTTGTTGGTACA+AGG | 0.523403 | 2_1:+4892456 | None:intergenic |
| ACCATCTCAACCAGCACCAC+CGG | 0.524305 | 2_1:-4892864 | Msa0189510:CDS |
| CGCCCCAGCAGGTGGTTGGG+TGG | 0.525317 | 2_1:+4892892 | None:intergenic |
| AGGGAACGGTGAATTAGCTC+TGG | 0.526856 | 2_1:+4893151 | None:intergenic |
| CTGTCCAGGAACGGAGCCGC+CGG | 0.530915 | 2_1:+4893174 | None:intergenic |
| GAGACTTTCCTCTATGATGA+TGG | 0.534079 | 2_1:+4895550 | None:intergenic |
| TGCACATATTCCTCCAAGAC+TGG | 0.534318 | 2_1:+4895367 | None:intergenic |
| AGTCCCTGGAGGACATATAT+GGG | 0.540568 | 2_1:+4893357 | None:intergenic |
| TCCGGTGGTGCTGGTTGAGA+TGG | 0.545833 | 2_1:+4892863 | None:intergenic |
| CCAACCTGCTTCAGGGACAC+AGG | 0.545878 | 2_1:+4895300 | None:intergenic |
| TTCCACCCAACCACCTGCTG+GGG | 0.546085 | 2_1:-4892894 | Msa0189510:CDS |
| TGTAATTGTTCATGCCATCT+CGG | 0.546230 | 2_1:+4892983 | None:intergenic |
| CCATCGAGTTCAGCAGTGCA+CGG | 0.552583 | 2_1:-4893081 | Msa0189510:CDS |
| GGTGTCGGCGCCCCAGCAGG+TGG | 0.552680 | 2_1:+4892884 | None:intergenic |
| TAAGTTTGCCACAGAACTCT+GGG | 0.552867 | 2_1:+4895328 | None:intergenic |
| AACTAATCAAACTTTGGTGA+TGG | 0.552884 | 2_1:-4892669 | Msa0189510:three_prime_UTR |
| CACTGAGTATGTGATTTCAA+TGG | 0.555250 | 2_1:-4894450 | Msa0189510:CDS |
| CCAAATTCAGCACTTGATGC+CGG | 0.556877 | 2_1:-4893193 | Msa0189510:CDS |
| TGGTCCTCTTAGCAGAAAGA+AGG | 0.558383 | 2_1:+4894486 | None:intergenic |
| TAGAGGAGAGTGAGAATACA+TGG | 0.558627 | 2_1:-4895428 | Msa0189510:CDS |
| AAGCAGCTTTGACACCAAGT+TGG | 0.560190 | 2_1:-4892738 | Msa0189510:CDS |
| AGCCATATGCTTGTACTGGT+TGG | 0.568682 | 2_1:-4895713 | Msa0189510:five_prime_UTR |
| CCGTGCACTGCTGAACTCGA+TGG | 0.569599 | 2_1:+4893081 | None:intergenic |
| TCTTCTCTCACTCTTGTACC+CGG | 0.570202 | 2_1:+4896832 | None:intergenic |
| AGATCAAGTAATACTTACAT+TGG | 0.570296 | 2_1:-4894410 | Msa0189510:CDS |
| ACATATGAACTAAATGTGCT+CGG | 0.570299 | 2_1:-4893259 | Msa0189510:CDS |
| CTAAATGTGCTCGGAACTCG+AGG | 0.572448 | 2_1:-4893250 | Msa0189510:CDS |
| GTACAAGGATAACATGGCCT+TGG | 0.582730 | 2_1:+4892471 | None:intergenic |
| TGGGAGTTACAACATAGCTC+AGG | 0.584581 | 2_1:-4893284 | Msa0189510:CDS |
| CTTACTGGCCATCATCATAG+AGG | 0.586395 | 2_1:-4895558 | Msa0189510:CDS |
| GGCATGAACAATTACAGTGC+TGG | 0.588906 | 2_1:-4892976 | Msa0189510:CDS |
| TGATGTCATTCGGCGACTAG+AGG | 0.590244 | 2_1:-4895445 | Msa0189510:CDS |
| CATCATAGAGGAAAGTCTCA+TGG | 0.596493 | 2_1:-4895546 | Msa0189510:CDS |
| GGCTCAGACAAAGGAATAGG+TGG | 0.596757 | 2_1:+4895102 | None:intergenic |
| TTTAATCATGAAGCAAAGAG+AGG | 0.598801 | 2_1:-4892703 | Msa0189510:three_prime_UTR |
| TAAAGGATATCGATAATCCA+TGG | 0.599763 | 2_1:+4892790 | None:intergenic |
| GCTCCGGAATGAGTCCTCTA+GGG | 0.602403 | 2_1:+4893132 | None:intergenic |
| CAACCTGCTTCAGGGACACA+GGG | 0.603326 | 2_1:+4895301 | None:intergenic |
| GCTATGTTGTAACTCCCAGA+TGG | 0.603839 | 2_1:+4893289 | None:intergenic |
| TGTAATTCAAAATAGCTGCT+GGG | 0.606882 | 2_1:-4895493 | Msa0189510:CDS |
| CATTGAATGATTCCGTCTCG+TGG | 0.607917 | 2_1:+4895158 | None:intergenic |
| TAGCTCTGGCTGTCCAGGAA+CGG | 0.608796 | 2_1:+4893165 | None:intergenic |
| CTATGTTGTAACTCCCAGAT+GGG | 0.609999 | 2_1:+4893290 | None:intergenic |
| TGCTCGGAACTCGAGGCCCA+AGG | 0.612968 | 2_1:-4893243 | Msa0189510:CDS |
| TATCGCCAAAGGTCCCATCT+GGG | 0.614613 | 2_1:-4893303 | Msa0189510:CDS |
| CGGTAGATTCATGCGTACCA+AGG | 0.617112 | 2_1:-4892488 | Msa0189510:three_prime_UTR |
| GACATCAAATAGTAATTCCG+GGG | 0.619654 | 2_1:+4895461 | None:intergenic |
| TTTCAGCCAGGGCCACGAGA+CGG | 0.619741 | 2_1:-4895170 | Msa0189510:intron |
| GAACGTCACGAACTATGCTA+CGG | 0.624312 | 2_1:+4895625 | None:intergenic |
| CATATATGGGCAGAAGTGCA+GGG | 0.629040 | 2_1:+4893370 | None:intergenic |
| TCCTGTAATGAGGATGATGA+CGG | 0.629322 | 2_1:-4893040 | Msa0189510:CDS |
| CTCGTCTTCCCAGTCCCTGG+AGG | 0.630641 | 2_1:+4893346 | None:intergenic |
| GTCTTGGAGGAATATGTGCA+AGG | 0.636885 | 2_1:-4895364 | Msa0189510:CDS |
| TGAAATCACATACTCAGTGT+AGG | 0.638165 | 2_1:+4894454 | None:intergenic |
| TTGTTGGTACAAGGATAACA+TGG | 0.638167 | 2_1:+4892465 | None:intergenic |
| TGGGAAAGATATGTTCACCA+TGG | 0.642687 | 2_1:-4892807 | Msa0189510:CDS |
| GGAATGAGTCCTCTAGGGAA+CGG | 0.643745 | 2_1:+4893137 | None:intergenic |
| GGTGCTGGTTGAGATGGTGT+CGG | 0.645312 | 2_1:+4892869 | None:intergenic |
| GCTAATTCACCGTTCCCTAG+AGG | 0.664796 | 2_1:-4893146 | Msa0189510:CDS |
| CTGCCCATATATGTCCTCCA+GGG | 0.665469 | 2_1:-4893360 | Msa0189510:CDS |
| ATACTTACATTGGAAAACTG+AGG | 0.671640 | 2_1:-4894400 | Msa0189510:intron |
| GTTAAGAGCCCAGAGTTCTG+TGG | 0.672556 | 2_1:-4895336 | Msa0189510:CDS |
| CTCAGCTTCATACAATACAA+GGG | 0.675039 | 2_1:-4896685 | Msa0189510:five_prime_UTR |
| AATTCAGCACTTGATGCCGG+CGG | 0.675089 | 2_1:-4893190 | Msa0189510:CDS |
| AATTGTTCATGCCATCTCGG+AGG | 0.682484 | 2_1:+4892986 | None:intergenic |
| CAGCATCTGAGCAATAACAA+TGG | 0.687773 | 2_1:+4892583 | None:intergenic |
| ATAATCTTATCATGTTCCGG+TGG | 0.692992 | 2_1:+4892848 | None:intergenic |
| ACATCAAATAGTAATTCCGG+GGG | 0.704639 | 2_1:+4895462 | None:intergenic |
| ATATGGGCAGAAGTGCAGGG+AGG | 0.788147 | 2_1:+4893373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAATATATTTTTTT+AGG | - | chr2_1:4892774-4892793 | Msa0189510:CDS | 0.0% |
| !!! | AATATATTTTTTTAGGTTTT+TGG | - | chr2_1:4892781-4892800 | Msa0189510:CDS | 10.0% |
| !!! | AATCTTAATTAGATTTTATA+TGG | + | chr2_1:4893218-4893237 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr2_1:4895419-4895438 | Msa0189510:CDS | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr2_1:4895420-4895439 | Msa0189510:CDS | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr2_1:4895468-4895487 | None:intergenic | 10.0% |
| !! | AAAAATAATAACTTTGGATT+TGG | + | chr2_1:4892611-4892630 | None:intergenic | 15.0% |
| !! | AAATACATAAAAAATTCTCT+TGG | + | chr2_1:4892716-4892735 | None:intergenic | 15.0% |
| !!! | CAACCTTTTTTTTTTTTTTT+TGG | - | chr2_1:4893098-4893117 | Msa0189510:CDS | 15.0% |
| !! | GTACCAAAAAAAAAAAAAAA+AGG | + | chr2_1:4893104-4893123 | None:intergenic | 15.0% |
| !!! | ATTAGATTTTATATGGTTTA+TGG | + | chr2_1:4893211-4893230 | None:intergenic | 15.0% |
| !! | TCTTAGTAAAAAAAAAAAAG+AGG | + | chr2_1:4893973-4893992 | None:intergenic | 15.0% |
| !! | TCATTATTATTTCAACATAA+AGG | + | chr2_1:4894004-4894023 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAAATTGAAAC+AGG | + | chr2_1:4894690-4894709 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+TGG | + | chr2_1:4895134-4895153 | None:intergenic | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr2_1:4895496-4895515 | Msa0189510:CDS | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr2_1:4895534-4895553 | None:intergenic | 15.0% |
| !! | AATAATTTATTTGCCTTGTA+AGG | - | chr2_1:4893181-4893200 | Msa0189510:CDS | 20.0% |
| !!! | TATTTTTTGCATTTGATTCA+TGG | - | chr2_1:4893336-4893355 | Msa0189510:CDS | 20.0% |
| !! | GTGTGTAAATATTGAAATAT+CGG | - | chr2_1:4893380-4893399 | Msa0189510:CDS | 20.0% |
| !!! | TTAGTTTTTGGATAGTATTT+TGG | - | chr2_1:4893422-4893441 | Msa0189510:intron | 20.0% |
| !! | AATTACTATTTGATGTCATT+CGG | - | chr2_1:4893777-4893796 | Msa0189510:intron | 20.0% |
| !! | TTTCAAAATTCAAACAGTTT+AGG | - | chr2_1:4894255-4894274 | Msa0189510:intron | 20.0% |
| !! | TTTCTGTAACATTTCTATAA+TGG | - | chr2_1:4894432-4894451 | Msa0189510:CDS | 20.0% |
| !!! | CTATGTTAAAAACTTCTTTT+AGG | - | chr2_1:4894895-4894914 | Msa0189510:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | - | chr2_1:4895107-4895126 | Msa0189510:CDS | 20.0% |
| !! | CATAAGTGGAAAATTATTTA+TGG | + | chr2_1:4895673-4895692 | None:intergenic | 20.0% |
| !!! | ATACCTTTTTAGAAAATCTA+CGG | + | chr2_1:4895912-4895931 | None:intergenic | 20.0% |
| !! | TATTCTTATTACTAGTGTTA+TGG | - | chr2_1:4896619-4896638 | Msa0189510:intron | 20.0% |
| !! | ATTCTTATTACTAGTGTTAT+GGG | - | chr2_1:4896620-4896639 | Msa0189510:intron | 20.0% |
| !!! | TTGAATGAAATTTTTGAGTC+CGG | - | chr2_1:4892381-4892400 | Msa0189510:three_prime_UTR | 25.0% |
| ! | TTCTCTAGATCTATTTATTC+TGG | - | chr2_1:4892572-4892591 | Msa0189510:three_prime_UTR | 25.0% |
| ! | TCTCTAGATCTATTTATTCT+GGG | - | chr2_1:4892573-4892592 | Msa0189510:three_prime_UTR | 25.0% |
| ! | AATTTGTAAGCATAGTAATG+AGG | - | chr2_1:4892808-4892827 | Msa0189510:CDS | 25.0% |
| !! | TATTTGTGTTTTGCAGATAA+AGG | - | chr2_1:4892909-4892928 | Msa0189510:CDS | 25.0% |
| !! | ATTTGTGTTTTGCAGATAAA+GGG | - | chr2_1:4892910-4892929 | Msa0189510:CDS | 25.0% |
| !!! | ATTAACTAGCAAGTTTTATG+AGG | - | chr2_1:4892971-4892990 | Msa0189510:CDS | 25.0% |
| ! | GTAAGATAAGCATAATGTAA+GGG | + | chr2_1:4893015-4893034 | None:intergenic | 25.0% |
| ! | TGTAAGATAAGCATAATGTA+AGG | + | chr2_1:4893016-4893035 | None:intergenic | 25.0% |
| ! | AAAAGGTTGCATATATCAAA+GGG | + | chr2_1:4893087-4893106 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGCATATATCAA+AGG | + | chr2_1:4893088-4893107 | None:intergenic | 25.0% |
| ! | AACTAAAGTTGCATATATCA+AGG | + | chr2_1:4893126-4893145 | None:intergenic | 25.0% |
| ! | TTGATATATGCAACTTTAGT+TGG | - | chr2_1:4893125-4893144 | Msa0189510:CDS | 25.0% |
| !!! | TTTTTGGATAGTATTTTGGT+AGG | - | chr2_1:4893426-4893445 | Msa0189510:intron | 25.0% |
| ! | ACAAAAGAGATACTTATTCT+TGG | - | chr2_1:4893562-4893581 | Msa0189510:intron | 25.0% |
| ! | CAAAAGAGATACTTATTCTT+GGG | - | chr2_1:4893563-4893582 | Msa0189510:intron | 25.0% |
| ! | ATGACATCAAATAGTAATTC+CGG | + | chr2_1:4893776-4893795 | None:intergenic | 25.0% |
| !!! | GTTTAGGTTTTTTAAGTTAC+TGG | - | chr2_1:4894271-4894290 | Msa0189510:intron | 25.0% |
| ! | ATGAATATTTGTGCATATGT+TGG | - | chr2_1:4894298-4894317 | Msa0189510:intron | 25.0% |
| !! | AATGTCTGATTTTTATGCAT+TGG | + | chr2_1:4894414-4894433 | None:intergenic | 25.0% |
| ! | AGAATCAATCACAAAATTCA+CGG | + | chr2_1:4894466-4894485 | None:intergenic | 25.0% |
| !!! | TGAATTTTGTGATTGATTCT+AGG | - | chr2_1:4894466-4894485 | Msa0189510:CDS | 25.0% |
| ! | GAAGTAGATAAAATTGAAAC+AGG | + | chr2_1:4894650-4894669 | None:intergenic | 25.0% |
| ! | AGATCAAGTAATACTTACAT+TGG | - | chr2_1:4894822-4894841 | Msa0189510:intron | 25.0% |
| ! | TTCTACTCTTAAAACTACTA+TGG | - | chr2_1:4894930-4894949 | Msa0189510:intron | 25.0% |
| !!! | TTAGAATGCATTTTGATAGT+CGG | + | chr2_1:4894965-4894984 | None:intergenic | 25.0% |
| !!! | GACTAATTTGTCTTTTTGTT+TGG | + | chr2_1:4895227-4895246 | None:intergenic | 25.0% |
| ! | ATGTTATTATCACTTATCAG+AGG | - | chr2_1:4895622-4895641 | Msa0189510:CDS | 25.0% |
| ! | TCAGAGGTAATAAATAATCT+AGG | - | chr2_1:4895638-4895657 | Msa0189510:exon | 25.0% |
| ! | AGAATAATCTTATCATGTTC+CGG | + | chr2_1:4896390-4896409 | None:intergenic | 25.0% |
| ! | GATAAGATTATTCTGCAATT+CGG | - | chr2_1:4896396-4896415 | Msa0189510:intron | 25.0% |
| !! | GTTTGATTAGTTCACTTTAA+AGG | + | chr2_1:4896555-4896574 | None:intergenic | 25.0% |
| ! | AAAGTGAACTAATCAAACTT+TGG | - | chr2_1:4896557-4896576 | Msa0189510:intron | 25.0% |
| ! | GACAGATAGATATAAAAACA+AGG | + | chr2_1:4896598-4896617 | None:intergenic | 25.0% |
| ! | TATGTTGTAACCTATGTATT+AGG | - | chr2_1:4896678-4896697 | Msa0189510:five_prime_UTR | 25.0% |
| ! | ATGTTGTAACCTATGTATTA+GGG | - | chr2_1:4896679-4896698 | Msa0189510:five_prime_UTR | 25.0% |
| !!! | TATAATAGTTTGTTGGTACA+AGG | + | chr2_1:4896779-4896798 | None:intergenic | 25.0% |
| ! | TTGTACCAACAAACTATTAT+AGG | - | chr2_1:4896778-4896797 | Msa0189510:five_prime_UTR | 25.0% |
| !! | CATAACCTATAATAGTTTGT+TGG | + | chr2_1:4896786-4896805 | None:intergenic | 25.0% |
| !!! | TGAATGAAATTTTTGAGTCC+GGG | - | chr2_1:4892382-4892401 | Msa0189510:three_prime_UTR | 30.0% |
| AGCAGAATGATAAAAGCTTT+AGG | + | chr2_1:4892503-4892522 | None:intergenic | 30.0% | |
| !!! | CTGATTTGGTTCTTAGTTTT+TGG | - | chr2_1:4893410-4893429 | Msa0189510:CDS | 30.0% |
| !! | AGTTTTGATGTCAAACTTAC+TGG | - | chr2_1:4893659-4893678 | Msa0189510:intron | 30.0% |
| !! | CAGCTATTTTGAATTACAAG+AGG | + | chr2_1:4893737-4893756 | None:intergenic | 30.0% |
| TTGTAATTCAAAATAGCTGC+TGG | - | chr2_1:4893738-4893757 | Msa0189510:intron | 30.0% | |
| TGTAATTCAAAATAGCTGCT+GGG | - | chr2_1:4893739-4893758 | Msa0189510:intron | 30.0% | |
| TGACATCAAATAGTAATTCC+GGG | + | chr2_1:4893775-4893794 | None:intergenic | 30.0% | |
| ! | TAAAAGCATATAAACCCACT+AGG | + | chr2_1:4894187-4894206 | None:intergenic | 30.0% |
| TTCTTTGATGTCCATTACAT+CGG | - | chr2_1:4894504-4894523 | Msa0189510:CDS | 30.0% | |
| ATACTTACATTGGAAAACTG+AGG | - | chr2_1:4894832-4894851 | Msa0189510:intron | 30.0% | |
| TTAACATAGTAGATGAGAGA+AGG | + | chr2_1:4894884-4894903 | None:intergenic | 30.0% | |
| CTGAAATTCATTGCAACTTT+GGG | + | chr2_1:4895021-4895040 | None:intergenic | 30.0% | |
| ACTGAAATTCATTGCAACTT+TGG | + | chr2_1:4895022-4895041 | None:intergenic | 30.0% | |
| AAGTTGCAATGAATTTCAGT+TGG | - | chr2_1:4895022-4895041 | Msa0189510:intron | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr2_1:4895345-4895364 | Msa0189510:CDS | 30.0% | |
| TTGGGACCGAAAATTATAAA+GGG | - | chr2_1:4895438-4895457 | Msa0189510:CDS | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr2_1:4895447-4895466 | None:intergenic | 30.0% |
| GAAGATATGAATAGCAAACA+AGG | + | chr2_1:4895709-4895728 | None:intergenic | 30.0% | |
| ATATCTTCAAGACCATTTAC+TGG | - | chr2_1:4895721-4895740 | Msa0189510:intron | 30.0% | |
| TATCTTCAAGACCATTTACT+GGG | - | chr2_1:4895722-4895741 | Msa0189510:intron | 30.0% | |
| AACAGAAAAAACCCAGTAAA+TGG | + | chr2_1:4895736-4895755 | None:intergenic | 30.0% | |
| ACATATGAACTAAATGTGCT+CGG | - | chr2_1:4895973-4895992 | Msa0189510:intron | 30.0% | |
| TAAAGGATATCGATAATCCA+TGG | + | chr2_1:4896445-4896464 | None:intergenic | 30.0% | |
| TTAAGCATATTGCAAAAGCT+TGG | + | chr2_1:4896476-4896495 | None:intergenic | 30.0% | |
| TTTAATCATGAAGCAAAGAG+AGG | - | chr2_1:4896529-4896548 | Msa0189510:intron | 30.0% | |
| AACTAATCAAACTTTGGTGA+TGG | - | chr2_1:4896563-4896582 | Msa0189510:intron | 30.0% | |
| ATTACTAGTGTTATGGGATT+AGG | - | chr2_1:4896626-4896645 | Msa0189510:intron | 30.0% | |
| ! | TGCTTTAAACCCTAATACAT+AGG | + | chr2_1:4896691-4896710 | None:intergenic | 30.0% |
| !!! | CAAATTGTCATTTTAGACAC+AGG | + | chr2_1:4896844-4896863 | None:intergenic | 30.0% |
| TCTCAGCTTCATACAATACA+AGG | - | chr2_1:4892546-4892565 | Msa0189510:three_prime_UTR | 35.0% | |
| CTCAGCTTCATACAATACAA+GGG | - | chr2_1:4892547-4892566 | Msa0189510:three_prime_UTR | 35.0% | |
| ! | TTCTTCAAATCTGAAGCCTT+TGG | - | chr2_1:4892666-4892685 | Msa0189510:three_prime_UTR | 35.0% |
| CTTACATGTGTTAACGATGA+TGG | - | chr2_1:4893030-4893049 | Msa0189510:CDS | 35.0% | |
| ! | TTTTGCTTCTACGTACTTAG+GGG | + | chr2_1:4893268-4893287 | None:intergenic | 35.0% |
| ! | GTTTTGCTTCTACGTACTTA+GGG | + | chr2_1:4893269-4893288 | None:intergenic | 35.0% |
| ! | TGTTTTGCTTCTACGTACTT+AGG | + | chr2_1:4893270-4893289 | None:intergenic | 35.0% |
| TTTGCATTTGATTCATGGCT+AGG | - | chr2_1:4893341-4893360 | Msa0189510:CDS | 35.0% | |
| ATATCGGAAGCTTTCTGATT+TGG | - | chr2_1:4893396-4893415 | Msa0189510:CDS | 35.0% | |
| GAACTGATACTCTTCTTTGA+TGG | - | chr2_1:4893495-4893514 | Msa0189510:intron | 35.0% | |
| ! | TCTCTTTTGTGAACTTCTGA+TGG | + | chr2_1:4893552-4893571 | None:intergenic | 35.0% |
| TTATTCTTGGGATTCTACTC+CGG | - | chr2_1:4893575-4893594 | Msa0189510:intron | 35.0% | |
| !!! | ATAGTTTTGGGAGCTTATCT+AGG | - | chr2_1:4893633-4893652 | Msa0189510:intron | 35.0% |
| ACATCAAATAGTAATTCCGG+GGG | + | chr2_1:4893773-4893792 | None:intergenic | 35.0% | |
| GACATCAAATAGTAATTCCG+GGG | + | chr2_1:4893774-4893793 | None:intergenic | 35.0% | |
| TATAAACCCACTAGGTAACT+AGG | + | chr2_1:4894179-4894198 | None:intergenic | 35.0% | |
| ! | CTTTTATGTTCAGATGCTTC+TGG | - | chr2_1:4894201-4894220 | Msa0189510:intron | 35.0% |
| ! | ATTTGTGCATATGTTGGTTG+TGG | - | chr2_1:4894304-4894323 | Msa0189510:intron | 35.0% |
| TCTTTGATGTCCATTACATC+GGG | - | chr2_1:4894505-4894524 | Msa0189510:CDS | 35.0% | |
| !! | TTTGACTTTTGCAGCTTTGT+TGG | - | chr2_1:4894707-4894726 | Msa0189510:intron | 35.0% |
| AATTCCTTCTTTCTGCTAAG+AGG | - | chr2_1:4894742-4894761 | Msa0189510:intron | 35.0% | |
| TGAAATCACATACTCAGTGT+AGG | + | chr2_1:4894781-4894800 | None:intergenic | 35.0% | |
| CACTGAGTATGTGATTTCAA+TGG | - | chr2_1:4894782-4894801 | Msa0189510:intron | 35.0% | |
| !!! | GATTCTGCTGTTTTACTTCT+GGG | + | chr2_1:4894990-4895009 | None:intergenic | 35.0% |
| !!! | TGATTCTGCTGTTTTACTTC+TGG | + | chr2_1:4894991-4895010 | None:intergenic | 35.0% |
| CTAATTTACGTTGAGTTCCA+AGG | + | chr2_1:4895279-4895298 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | - | chr2_1:4895301-4895320 | Msa0189510:intron | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | - | chr2_1:4895437-4895456 | Msa0189510:CDS | 35.0% | |
| GAATATCTGCATCACATAAG+TGG | + | chr2_1:4895687-4895706 | None:intergenic | 35.0% | |
| TACACCAGATCAAACTTTCT+TGG | - | chr2_1:4895808-4895827 | Msa0189510:intron | 35.0% | |
| TGTTCCAAGAAAGTTTGATC+TGG | + | chr2_1:4895815-4895834 | None:intergenic | 35.0% | |
| !! | GAGCCGTAGATTTTCTAAAA+AGG | - | chr2_1:4895906-4895925 | Msa0189510:intron | 35.0% |
| !! | TTCTAAAAAGGTATCGCCAA+AGG | - | chr2_1:4895918-4895937 | Msa0189510:intron | 35.0% |
| TAATGCAATGCATCTTCCTT+GGG | + | chr2_1:4896008-4896027 | None:intergenic | 35.0% | |
| ATAATGCAATGCATCTTCCT+TGG | + | chr2_1:4896009-4896028 | None:intergenic | 35.0% | |
| TGTAATTGTTCATGCCATCT+CGG | + | chr2_1:4896252-4896271 | None:intergenic | 35.0% | |
| ATAATCTTATCATGTTCCGG+TGG | + | chr2_1:4896387-4896406 | None:intergenic | 35.0% | |
| AAAGCTTGGAATGCAGATAA+AGG | + | chr2_1:4896462-4896481 | None:intergenic | 35.0% | |
| AAACTATTCACAAGCCAACT+TGG | + | chr2_1:4896511-4896530 | None:intergenic | 35.0% | |
| ATGTTGCTGTGTTTCTTTCT+CGG | - | chr2_1:4896724-4896743 | Msa0189510:five_prime_UTR | 35.0% | |
| TTGTTGGTACAAGGATAACA+TGG | + | chr2_1:4896770-4896789 | None:intergenic | 35.0% | |
| !! | GTGATCTAGCTTAGGAGTTT+TGG | - | chr2_1:4892939-4892958 | Msa0189510:CDS | 40.0% |
| GGTTTATGGAACACCTTACA+AGG | + | chr2_1:4893197-4893216 | None:intergenic | 40.0% | |
| TTTGCTTCTACGTACTTAGG+GGG | + | chr2_1:4893267-4893286 | None:intergenic | 40.0% | |
| AACCAACCAGTACAAGCATA+TGG | + | chr2_1:4893524-4893543 | None:intergenic | 40.0% | |
| TATGCTACGGAAAGACATTC+CGG | + | chr2_1:4893597-4893616 | None:intergenic | 40.0% | |
| ! | GTGACGTTCGTGATAGTTTT+GGG | - | chr2_1:4893621-4893640 | Msa0189510:intron | 40.0% |
| GAGACTTTCCTCTATGATGA+TGG | + | chr2_1:4893685-4893704 | None:intergenic | 40.0% | |
| CATCATAGAGGAAAGTCTCA+TGG | - | chr2_1:4893686-4893705 | Msa0189510:intron | 40.0% | |
| ! | AAAGTCTCATGGTTCTGTAC+AGG | - | chr2_1:4893697-4893716 | Msa0189510:intron | 40.0% |
| TAGAGGAGAGTGAGAATACA+TGG | - | chr2_1:4893804-4893823 | Msa0189510:intron | 40.0% | |
| GCAACTACATGCTTTCTTGA+AGG | + | chr2_1:4893830-4893849 | None:intergenic | 40.0% | |
| TAAGTTTGCCACAGAACTCT+GGG | + | chr2_1:4893907-4893926 | None:intergenic | 40.0% | |
| !! | TTCGTTTCACTTTTCAGCCA+GGG | - | chr2_1:4894051-4894070 | Msa0189510:intron | 40.0% |
| !!! | GCGTCAATGAAGTTTTGTTC+TGG | - | chr2_1:4894345-4894364 | Msa0189510:intron | 40.0% |
| ! | GTGATTGATTCTAGGAGTCT+TGG | - | chr2_1:4894474-4894493 | Msa0189510:CDS | 40.0% |
| CTTTGATGTCCATTACATCG+GGG | - | chr2_1:4894506-4894525 | Msa0189510:CDS | 40.0% | |
| TTTGATGTCCATTACATCGG+GGG | - | chr2_1:4894507-4894526 | Msa0189510:CDS | 40.0% | |
| !! | GCAGCTTTGTTGGTTGAAAA+TGG | - | chr2_1:4894717-4894736 | Msa0189510:intron | 40.0% |
| TGCCTCTTAGAATTACGTTG+CGG | - | chr2_1:4895249-4895268 | Msa0189510:intron | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+AGG | - | chr2_1:4895507-4895526 | Msa0189510:CDS | 40.0% |
| CTATGTTGTAACTCCCAGAT+GGG | + | chr2_1:4895945-4895964 | None:intergenic | 40.0% | |
| ACTTCGAAAATGAGATGCTC+CGG | + | chr2_1:4896119-4896138 | None:intergenic | 40.0% | |
| TCCTGTAATGAGGATGATGA+CGG | - | chr2_1:4896192-4896211 | Msa0189510:intron | 40.0% | |
| !! | GGCTTGTTTTTCAGAACCAA+AGG | + | chr2_1:4896228-4896247 | None:intergenic | 40.0% |
| !!! | AGTGCTGGTGCCTTAATTTT+CGG | - | chr2_1:4896271-4896290 | Msa0189510:five_prime_UTR | 40.0% |
| TTACTCGTCCCCGAAAATTA+AGG | + | chr2_1:4896284-4896303 | None:intergenic | 40.0% | |
| ATTCTGCAATTCGGCAAAGT+TGG | - | chr2_1:4896405-4896424 | Msa0189510:intron | 40.0% | |
| TTCTGCAATTCGGCAAAGTT+GGG | - | chr2_1:4896406-4896425 | Msa0189510:intron | 40.0% | |
| TGGGAAAGATATGTTCACCA+TGG | - | chr2_1:4896425-4896444 | Msa0189510:intron | 40.0% | |
| CAGCATCTGAGCAATAACAA+TGG | + | chr2_1:4896652-4896671 | None:intergenic | 40.0% | |
| TCTTCTCTCACTCTTGTACC+CGG | + | chr2_1:4892403-4892422 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGATGA+GGG | - | chr2_1:4892442-4892461 | Msa0189510:three_prime_UTR | 45.0% | |
| ! | ATCTGAAGCCTTTGGTCAAC+TGG | - | chr2_1:4892674-4892693 | Msa0189510:three_prime_UTR | 45.0% |
| ! | TCTGAAGCCTTTGGTCAACT+GGG | - | chr2_1:4892675-4892694 | Msa0189510:three_prime_UTR | 45.0% |
| ACAGAAACCCAGTTGACCAA+AGG | + | chr2_1:4892685-4892704 | None:intergenic | 45.0% | |
| ! | GGTGCTTTGTGATCTAGCTT+AGG | - | chr2_1:4892931-4892950 | Msa0189510:CDS | 45.0% |
| TTGCTTCTACGTACTTAGGG+GGG | + | chr2_1:4893266-4893285 | None:intergenic | 45.0% | |
| CATGGCTAGGATGCATAAAC+TGG | - | chr2_1:4893354-4893373 | Msa0189510:CDS | 45.0% | |
| ! | AGCCATATGCTTGTACTGGT+TGG | - | chr2_1:4893519-4893538 | Msa0189510:intron | 45.0% |
| GAACGTCACGAACTATGCTA+CGG | + | chr2_1:4893610-4893629 | None:intergenic | 45.0% | |
| ! | CGTGACGTTCGTGATAGTTT+TGG | - | chr2_1:4893620-4893639 | Msa0189510:intron | 45.0% |
| CTTACTGGCCATCATCATAG+AGG | - | chr2_1:4893674-4893693 | Msa0189510:intron | 45.0% | |
| TGCACATATTCCTCCAAGAC+TGG | + | chr2_1:4893868-4893887 | None:intergenic | 45.0% | |
| GTCTTGGAGGAATATGTGCA+AGG | - | chr2_1:4893868-4893887 | Msa0189510:intron | 45.0% | |
| GTAAGTTTGCCACAGAACTC+TGG | + | chr2_1:4893908-4893927 | None:intergenic | 45.0% | |
| TTTGCAACCAACCTGCTTCA+GGG | + | chr2_1:4893942-4893961 | None:intergenic | 45.0% | |
| ATTTGCAACCAACCTGCTTC+AGG | + | chr2_1:4893943-4893962 | None:intergenic | 45.0% | |
| !! | GTTCGTTTCACTTTTCAGCC+AGG | - | chr2_1:4894050-4894069 | Msa0189510:intron | 45.0% |
| CATTGAATGATTCCGTCTCG+TGG | + | chr2_1:4894077-4894096 | None:intergenic | 45.0% | |
| CTTACGCCTAGTTACCTAGT+GGG | - | chr2_1:4894170-4894189 | Msa0189510:intron | 45.0% | |
| TTGATGTCCATTACATCGGG+GGG | - | chr2_1:4894508-4894527 | Msa0189510:CDS | 45.0% | |
| TGGTCCTCTTAGCAGAAAGA+AGG | + | chr2_1:4894749-4894768 | None:intergenic | 45.0% | |
| TTCTTTCTGCTAAGAGGACC+AGG | - | chr2_1:4894748-4894767 | Msa0189510:intron | 45.0% | |
| AATTTGTCCGGTCCTGACTT+GGG | + | chr2_1:4895522-4895541 | None:intergenic | 45.0% | |
| AAATTTGTCCGGTCCTGACT+TGG | + | chr2_1:4895523-4895542 | None:intergenic | 45.0% | |
| ! | CATATATGGGCAGAAGTGCA+GGG | + | chr2_1:4895865-4895884 | None:intergenic | 45.0% |
| ! | ACATATATGGGCAGAAGTGC+AGG | + | chr2_1:4895866-4895885 | None:intergenic | 45.0% |
| AGTCCCTGGAGGACATATAT+GGG | + | chr2_1:4895878-4895897 | None:intergenic | 45.0% | |
| ATATATGTCCTCCAGGGACT+GGG | - | chr2_1:4895878-4895897 | Msa0189510:intron | 45.0% | |
| GCTATGTTGTAACTCCCAGA+TGG | + | chr2_1:4895946-4895965 | None:intergenic | 45.0% | |
| TGGGAGTTACAACATAGCTC+AGG | - | chr2_1:4895948-4895967 | Msa0189510:intron | 45.0% | |
| CCAAATTCAGCACTTGATGC+CGG | - | chr2_1:4896039-4896058 | Msa0189510:intron | 45.0% | |
| !!! | AGTGCACGGTTTTCTGAGAT+TGG | - | chr2_1:4896165-4896184 | Msa0189510:intron | 45.0% |
| !!! | GTGCACGGTTTTCTGAGATT+GGG | - | chr2_1:4896166-4896185 | Msa0189510:intron | 45.0% |
| !!! | TGCACGGTTTTCTGAGATTG+GGG | - | chr2_1:4896167-4896186 | Msa0189510:intron | 45.0% |
| TGAAAAACAAGCCTCCGAGA+TGG | - | chr2_1:4896235-4896254 | Msa0189510:intron | 45.0% | |
| AATTGTTCATGCCATCTCGG+AGG | + | chr2_1:4896249-4896268 | None:intergenic | 45.0% | |
| GGCATGAACAATTACAGTGC+TGG | - | chr2_1:4896256-4896275 | Msa0189510:intron | 45.0% | |
| !! | GTGCTGGTGCCTTAATTTTC+GGG | - | chr2_1:4896272-4896291 | Msa0189510:five_prime_UTR | 45.0% |
| ! | TGCTGGTGCCTTAATTTTCG+GGG | - | chr2_1:4896273-4896292 | Msa0189510:five_prime_UTR | 45.0% |
| ! | AAGCAGCTTTGACACCAAGT+TGG | - | chr2_1:4896494-4896513 | Msa0189510:intron | 45.0% |
| GTACAAGGATAACATGGCCT+TGG | + | chr2_1:4896764-4896783 | None:intergenic | 45.0% | |
| !! | TAAAAAAAAAATAATAACTT+TGG | + | chr2_1:4892617-4892636 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr2_1:4895469-4895488 | None:intergenic | 5.0% |
| GAGAGAGAGAGAGAGAGATG+AGG | - | chr2_1:4892441-4892460 | Msa0189510:three_prime_UTR | 50.0% | |
| TGGCAGCCATATGCTTGTAC+TGG | - | chr2_1:4893515-4893534 | Msa0189510:intron | 50.0% | |
| TGATGTCATTCGGCGACTAG+AGG | - | chr2_1:4893787-4893806 | Msa0189510:intron | 50.0% | |
| GTGCTTCTGTTTGCCAGTCT+TGG | - | chr2_1:4893852-4893871 | Msa0189510:intron | 50.0% | |
| CTTCTGTTTGCCAGTCTTGG+AGG | - | chr2_1:4893855-4893874 | Msa0189510:intron | 50.0% | |
| GTTAAGAGCCCAGAGTTCTG+TGG | - | chr2_1:4893896-4893915 | Msa0189510:intron | 50.0% | |
| GGCTCAGACAAAGGAATAGG+TGG | + | chr2_1:4894133-4894152 | None:intergenic | 50.0% | |
| CAGGGCTCAGACAAAGGAAT+AGG | + | chr2_1:4894136-4894155 | None:intergenic | 50.0% | |
| CTATTCCTTTGTCTGAGCCC+TGG | - | chr2_1:4894134-4894153 | Msa0189510:intron | 50.0% | |
| !! | TAAGCGAAGAGCGCTTACCA+GGG | + | chr2_1:4894154-4894173 | None:intergenic | 50.0% |
| GCTTACGCCTAGTTACCTAG+TGG | - | chr2_1:4894169-4894188 | Msa0189510:intron | 50.0% | |
| TGATGTCCATTACATCGGGG+GGG | - | chr2_1:4894509-4894528 | Msa0189510:CDS | 50.0% | |
| CTCAGTGTAGGTTGTTCTCC+TGG | + | chr2_1:4894769-4894788 | None:intergenic | 50.0% | |
| CGCCGCAACGTAATTCTAAG+AGG | + | chr2_1:4895254-4895273 | None:intergenic | 50.0% | |
| AATTACGTTGCGGCGAACCT+TGG | - | chr2_1:4895259-4895278 | Msa0189510:intron | 50.0% | |
| TCTGCCCATATATGTCCTCC+AGG | - | chr2_1:4895871-4895890 | Msa0189510:intron | 50.0% | |
| CTGCCCATATATGTCCTCCA+GGG | - | chr2_1:4895872-4895891 | Msa0189510:intron | 50.0% | |
| CAGTCCCTGGAGGACATATA+TGG | + | chr2_1:4895879-4895898 | None:intergenic | 50.0% | |
| CATATATGTCCTCCAGGGAC+TGG | - | chr2_1:4895877-4895896 | Msa0189510:intron | 50.0% | |
| TATCGCCAAAGGTCCCATCT+GGG | - | chr2_1:4895929-4895948 | Msa0189510:intron | 50.0% | |
| TAACTCCCAGATGGGACCTT+TGG | + | chr2_1:4895937-4895956 | None:intergenic | 50.0% | |
| CTAAATGTGCTCGGAACTCG+AGG | - | chr2_1:4895982-4896001 | Msa0189510:intron | 50.0% | |
| !! | CCGGCATCAAGTGCTGAATT+TGG | + | chr2_1:4896042-4896061 | None:intergenic | 50.0% |
| AATTCAGCACTTGATGCCGG+CGG | - | chr2_1:4896042-4896061 | Msa0189510:intron | 50.0% | |
| !! | TGAATTAGCTCTGGCTGTCC+AGG | + | chr2_1:4896075-4896094 | None:intergenic | 50.0% |
| AGGGAACGGTGAATTAGCTC+TGG | + | chr2_1:4896084-4896103 | None:intergenic | 50.0% | |
| GCTAATTCACCGTTCCCTAG+AGG | - | chr2_1:4896086-4896105 | Msa0189510:intron | 50.0% | |
| ! | GGAATGAGTCCTCTAGGGAA+CGG | + | chr2_1:4896098-4896117 | None:intergenic | 50.0% |
| GTTCCCTAGAGGACTCATTC+CGG | - | chr2_1:4896097-4896116 | Msa0189510:intron | 50.0% | |
| !!! | GCACGGTTTTCTGAGATTGG+GGG | - | chr2_1:4896168-4896187 | Msa0189510:intron | 50.0% |
| GATTGGGGGATCCTGTAATG+AGG | - | chr2_1:4896182-4896201 | Msa0189510:intron | 50.0% | |
| GCCGTCATCATCCTCATTAC+AGG | + | chr2_1:4896196-4896215 | None:intergenic | 50.0% | |
| TGACGGCAAGATGAGACCTT+TGG | - | chr2_1:4896209-4896228 | Msa0189510:intron | 50.0% | |
| TTATCATGTTCCGGTGGTGC+TGG | + | chr2_1:4896381-4896400 | None:intergenic | 50.0% | |
| CGGTAGATTCATGCGTACCA+AGG | - | chr2_1:4896744-4896763 | Msa0189510:five_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGATGAGGG+AGG | - | chr2_1:4892445-4892464 | Msa0189510:three_prime_UTR | 55.0% | |
| CAACCTGCTTCAGGGACACA+GGG | + | chr2_1:4893934-4893953 | None:intergenic | 55.0% | |
| GCTTACCAGGGCTCAGACAA+AGG | + | chr2_1:4894142-4894161 | None:intergenic | 55.0% | |
| !! | GTAAGCGAAGAGCGCTTACC+AGG | + | chr2_1:4894155-4894174 | None:intergenic | 55.0% |
| GTATTGCCCCCCCGATGTAA+TGG | + | chr2_1:4894518-4894537 | None:intergenic | 55.0% | |
| ACATTGGCCCAAGTCAGGAC+CGG | - | chr2_1:4895512-4895531 | Msa0189510:CDS | 55.0% | |
| ! | ATATGGGCAGAAGTGCAGGG+AGG | + | chr2_1:4895862-4895881 | None:intergenic | 55.0% |
| GTATCGCCAAAGGTCCCATC+TGG | - | chr2_1:4895928-4895947 | Msa0189510:intron | 55.0% | |
| !! | TAGCTCTGGCTGTCCAGGAA+CGG | + | chr2_1:4896070-4896089 | None:intergenic | 55.0% |
| GCTCCGGAATGAGTCCTCTA+GGG | + | chr2_1:4896103-4896122 | None:intergenic | 55.0% | |
| TGCTCCGGAATGAGTCCTCT+AGG | + | chr2_1:4896104-4896123 | None:intergenic | 55.0% | |
| CCATCGAGTTCAGCAGTGCA+CGG | - | chr2_1:4896151-4896170 | Msa0189510:intron | 55.0% | |
| !! | GGTGCTGGTTGAGATGGTGT+CGG | + | chr2_1:4896366-4896385 | None:intergenic | 55.0% |
| ACCATCTCAACCAGCACCAC+CGG | - | chr2_1:4896368-4896387 | Msa0189510:intron | 55.0% | |
| GTTCCCTGTGTCCCTGAAGC+AGG | - | chr2_1:4893928-4893947 | Msa0189510:intron | 60.0% | |
| CCAACCTGCTTCAGGGACAC+AGG | + | chr2_1:4893935-4893954 | None:intergenic | 60.0% | |
| CCTGTGTCCCTGAAGCAGGT+TGG | - | chr2_1:4893932-4893951 | Msa0189510:intron | 60.0% | |
| TTTCAGCCAGGGCCACGAGA+CGG | - | chr2_1:4894062-4894081 | Msa0189510:intron | 60.0% | |
| ATGATTCCGTCTCGTGGCCC+TGG | + | chr2_1:4894071-4894090 | None:intergenic | 60.0% | |
| CCGTGCACTGCTGAACTCGA+TGG | + | chr2_1:4896154-4896173 | None:intergenic | 60.0% | |
| CTTCCACCCAACCACCTGCT+GGG | - | chr2_1:4896337-4896356 | Msa0189510:intron | 60.0% | |
| TTCCACCCAACCACCTGCTG+GGG | - | chr2_1:4896338-4896357 | Msa0189510:intron | 60.0% | |
| !! | TCCGGTGGTGCTGGTTGAGA+TGG | + | chr2_1:4896372-4896391 | None:intergenic | 60.0% |
| CTCGTCTTCCCAGTCCCTGG+AGG | + | chr2_1:4895889-4895908 | None:intergenic | 65.0% | |
| TGCTCGGAACTCGAGGCCCA+AGG | - | chr2_1:4895989-4896008 | Msa0189510:intron | 65.0% | |
| GCTTCCACCCAACCACCTGC+TGG | - | chr2_1:4896336-4896355 | Msa0189510:intron | 65.0% | |
| CTGCTGGGCGAACTTGCCCC+CGG | - | chr2_1:4893754-4893773 | Msa0189510:intron | 70.0% | |
| CGGCTCGTCTTCCCAGTCCC+TGG | + | chr2_1:4895892-4895911 | None:intergenic | 70.0% | |
| CTGTCCAGGAACGGAGCCGC+CGG | + | chr2_1:4896061-4896080 | None:intergenic | 70.0% | |
| GATGCCGGCGGCTCCGTTCC+TGG | - | chr2_1:4896054-4896073 | Msa0189510:intron | 75.0% | |
| CGCCCCAGCAGGTGGTTGGG+TGG | + | chr2_1:4896343-4896362 | None:intergenic | 75.0% | |
| CGGCGCCCCAGCAGGTGGTT+GGG | + | chr2_1:4896346-4896365 | None:intergenic | 75.0% | |
| TCGGCGCCCCAGCAGGTGGT+TGG | + | chr2_1:4896347-4896366 | None:intergenic | 75.0% | |
| !! | GATGGTGTCGGCGCCCCAGC+AGG | + | chr2_1:4896354-4896373 | None:intergenic | 75.0% |
| !!! | GGTGTCGGCGCCCCAGCAGG+TGG | + | chr2_1:4896351-4896370 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4892379 | 4896875 | 4892379 | ID=Msa0189510;Name=Msa0189510 |
| chr2_1 | mRNA | 4892379 | 4896875 | 4892379 | ID=Msa0189510-mRNA-1;Parent=Msa0189510;Name=Msa0189510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|0.5|0.42|7|348|427 |
| chr2_1 | exon | 4892379 | 4893438 | 4892379 | ID=Msa0189510-mRNA-1:exon:2210;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4894401 | 4894533 | 4894401 | ID=Msa0189510-mRNA-1:exon:2209;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4895099 | 4895186 | 4895099 | ID=Msa0189510-mRNA-1:exon:2208;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4895305 | 4895733 | 4895305 | ID=Msa0189510-mRNA-1:exon:2207;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4896262 | 4896329 | 4896262 | ID=Msa0189510-mRNA-1:exon:2206;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4896660 | 4896814 | 4896660 | ID=Msa0189510-mRNA-1:exon:2205;Parent=Msa0189510-mRNA-1 |
| chr2_1 | exon | 4896839 | 4896875 | 4896839 | ID=Msa0189510-mRNA-1:exon:2204;Parent=Msa0189510-mRNA-1 |
| chr2_1 | five_prime_UTR | 4896839 | 4896875 | 4896839 | ID=Msa0189510-mRNA-1:five_prime_utr;Parent=Msa0189510-mRNA-1 |
| chr2_1 | five_prime_UTR | 4896660 | 4896814 | 4896660 | ID=Msa0189510-mRNA-1:five_prime_utr;Parent=Msa0189510-mRNA-1 |
| chr2_1 | five_prime_UTR | 4896262 | 4896329 | 4896262 | ID=Msa0189510-mRNA-1:five_prime_utr;Parent=Msa0189510-mRNA-1 |
| chr2_1 | five_prime_UTR | 4895656 | 4895733 | 4895656 | ID=Msa0189510-mRNA-1:five_prime_utr;Parent=Msa0189510-mRNA-1 |
| chr2_1 | CDS | 4895305 | 4895655 | 4895305 | ID=Msa0189510-mRNA-1:cds;Parent=Msa0189510-mRNA-1 |
| chr2_1 | CDS | 4895099 | 4895186 | 4895099 | ID=Msa0189510-mRNA-1:cds;Parent=Msa0189510-mRNA-1 |
| chr2_1 | CDS | 4894401 | 4894533 | 4894401 | ID=Msa0189510-mRNA-1:cds;Parent=Msa0189510-mRNA-1 |
| chr2_1 | CDS | 4892727 | 4893438 | 4892727 | ID=Msa0189510-mRNA-1:cds;Parent=Msa0189510-mRNA-1 |
| chr2_1 | three_prime_UTR | 4892379 | 4892726 | 4892379 | ID=Msa0189510-mRNA-1:three_prime_utr;Parent=Msa0189510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
