Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189770 | GAU50549.1 | 64.596 | 483 | 143 | 6 | 5 | 481 | 5 | 465 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189770 | sp|Q9SZL8|FRS5_ARATH | 38.144 | 291 | 173 | 3 | 115 | 402 | 409 | 695 | 6.44e-64 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189770 | A0A2Z6PSQ9 | 64.596 | 483 | 143 | 6 | 5 | 481 | 5 | 465 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0189770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189770 | MtrunA17_Chr1g0202341 | 78.667 | 300 | 64 | 0 | 118 | 417 | 387 | 686 | 1.49e-172 | 501 |
| Msa0189770 | MtrunA17_Chr1g0202341 | 65.254 | 118 | 39 | 2 | 5 | 121 | 13 | 129 | 2.08e-42 | 160 |
| Msa0189770 | MtrunA17_Chr5g0448761 | 40.753 | 292 | 160 | 2 | 115 | 400 | 400 | 684 | 1.30e-70 | 239 |
| Msa0189770 | MtrunA17_Chr5g0448511 | 36.570 | 309 | 183 | 3 | 115 | 420 | 172 | 470 | 2.09e-69 | 231 |
| Msa0189770 | MtrunA17_Chr3g0118611 | 36.149 | 296 | 182 | 3 | 110 | 403 | 271 | 561 | 1.62e-57 | 203 |
| Msa0189770 | MtrunA17_Chr5g0440451 | 36.585 | 287 | 169 | 3 | 121 | 403 | 387 | 664 | 2.59e-56 | 201 |
| Msa0189770 | MtrunA17_Chr8g0363841 | 34.122 | 296 | 177 | 5 | 118 | 400 | 353 | 643 | 1.69e-45 | 168 |
| Msa0189770 | MtrunA17_Chr2g0329031 | 29.674 | 337 | 215 | 6 | 117 | 444 | 340 | 663 | 1.71e-44 | 166 |
| Msa0189770 | MtrunA17_Chr2g0287061 | 32.817 | 323 | 184 | 7 | 120 | 413 | 483 | 801 | 9.46e-44 | 164 |
| Msa0189770 | MtrunA17_Chr1g0198761 | 29.539 | 369 | 236 | 9 | 112 | 476 | 387 | 735 | 9.87e-44 | 164 |
| Msa0189770 | MtrunA17_Chr1g0207551 | 33.106 | 293 | 189 | 2 | 117 | 409 | 367 | 652 | 1.54e-43 | 164 |
| Msa0189770 | MtrunA17_Chr3g0080351 | 32.509 | 283 | 180 | 3 | 116 | 396 | 400 | 673 | 2.79e-43 | 163 |
| Msa0189770 | MtrunA17_Chr6g0477261 | 31.307 | 329 | 209 | 4 | 130 | 452 | 229 | 546 | 3.51e-37 | 144 |
| Msa0189770 | MtrunA17_Chr5g0441581 | 33.969 | 262 | 165 | 2 | 127 | 383 | 365 | 623 | 7.94e-37 | 144 |
| Msa0189770 | MtrunA17_Chr2g0296781 | 31.609 | 348 | 189 | 9 | 127 | 452 | 337 | 657 | 1.14e-36 | 143 |
| Msa0189770 | MtrunA17_Chr2g0291581 | 29.897 | 291 | 189 | 4 | 120 | 400 | 394 | 679 | 7.34e-36 | 141 |
| Msa0189770 | MtrunA17_Chr1g0196541 | 37.559 | 213 | 125 | 3 | 130 | 335 | 340 | 551 | 3.21e-33 | 133 |
| Msa0189770 | MtrunA17_Chr6g0458391 | 33.803 | 213 | 138 | 3 | 129 | 340 | 555 | 765 | 1.83e-31 | 128 |
| Msa0189770 | MtrunA17_Chr3g0077241 | 61.290 | 93 | 31 | 3 | 6 | 97 | 1 | 89 | 6.92e-31 | 115 |
| Msa0189770 | MtrunA17_Chr1g0203721 | 26.667 | 300 | 213 | 4 | 121 | 417 | 405 | 700 | 1.40e-30 | 125 |
| Msa0189770 | MtrunA17_Chr2g0276841 | 32.536 | 209 | 136 | 1 | 127 | 335 | 421 | 624 | 1.92e-29 | 122 |
| Msa0189770 | MtrunA17_Chr2g0324011 | 30.556 | 252 | 162 | 6 | 120 | 365 | 348 | 592 | 2.75e-29 | 121 |
| Msa0189770 | MtrunA17_Chr2g0290391 | 31.624 | 234 | 143 | 4 | 118 | 351 | 402 | 618 | 4.68e-29 | 120 |
| Msa0189770 | MtrunA17_Chr2g0294841 | 23.989 | 371 | 233 | 7 | 128 | 474 | 400 | 745 | 2.28e-28 | 119 |
| Msa0189770 | MtrunA17_Chr3g0082121 | 29.455 | 275 | 177 | 5 | 116 | 382 | 366 | 631 | 2.41e-27 | 115 |
| Msa0189770 | MtrunA17_Chr2g0287651 | 28.761 | 226 | 160 | 1 | 118 | 342 | 409 | 634 | 7.26e-27 | 114 |
| Msa0189770 | MtrunA17_Chr2g0308841 | 27.064 | 218 | 158 | 1 | 120 | 336 | 6 | 223 | 3.54e-26 | 107 |
| Msa0189770 | MtrunA17_Chr4g0052331 | 50.000 | 96 | 47 | 1 | 1 | 96 | 1 | 95 | 6.70e-26 | 101 |
| Msa0189770 | MtrunA17_Chr1g0203051 | 26.267 | 217 | 159 | 1 | 113 | 328 | 406 | 622 | 4.98e-22 | 99.4 |
| Msa0189770 | MtrunA17_Chr2g0291591 | 30.000 | 170 | 118 | 1 | 120 | 288 | 397 | 566 | 4.28e-18 | 87.0 |
| Msa0189770 | MtrunA17_Chr2g0329361 | 51.515 | 66 | 32 | 0 | 42 | 107 | 59 | 124 | 3.64e-15 | 75.5 |
| Msa0189770 | MtrunA17_Chr2g0329421 | 40.541 | 74 | 40 | 1 | 29 | 98 | 8 | 81 | 3.12e-12 | 65.9 |
| Msa0189770 | MtrunA17_Chr1g0172041 | 45.455 | 55 | 30 | 0 | 288 | 342 | 36 | 90 | 9.81e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189770 | AT4G38180.1 | 38.144 | 291 | 173 | 3 | 115 | 402 | 409 | 695 | 6.54e-65 | 224 |
| Msa0189770 | AT4G38170.1 | 34.266 | 286 | 185 | 1 | 115 | 400 | 174 | 456 | 4.77e-59 | 203 |
| Msa0189770 | AT2G27110.3 | 35.336 | 283 | 177 | 3 | 121 | 403 | 217 | 493 | 1.04e-54 | 195 |
| Msa0189770 | AT2G27110.2 | 35.689 | 283 | 176 | 4 | 121 | 403 | 362 | 638 | 3.28e-54 | 195 |
| Msa0189770 | AT2G27110.1 | 35.689 | 283 | 176 | 4 | 121 | 403 | 362 | 638 | 3.28e-54 | 195 |
| Msa0189770 | AT5G18960.2 | 36.653 | 251 | 144 | 2 | 120 | 358 | 511 | 758 | 3.26e-48 | 177 |
| Msa0189770 | AT5G18960.2 | 45.714 | 70 | 34 | 1 | 33 | 98 | 28 | 97 | 1.05e-11 | 67.8 |
| Msa0189770 | AT5G18960.1 | 36.653 | 251 | 144 | 2 | 120 | 358 | 511 | 758 | 3.26e-48 | 177 |
| Msa0189770 | AT5G18960.1 | 45.714 | 70 | 34 | 1 | 33 | 98 | 28 | 97 | 1.05e-11 | 67.8 |
| Msa0189770 | AT4G15090.1 | 31.922 | 307 | 197 | 4 | 117 | 418 | 387 | 686 | 1.13e-47 | 176 |
| Msa0189770 | AT4G15090.5 | 31.922 | 307 | 197 | 4 | 117 | 418 | 387 | 686 | 1.13e-47 | 176 |
| Msa0189770 | AT4G15090.3 | 31.922 | 307 | 197 | 4 | 117 | 418 | 387 | 686 | 1.13e-47 | 176 |
| Msa0189770 | AT4G15090.2 | 31.922 | 307 | 197 | 4 | 117 | 418 | 387 | 686 | 1.13e-47 | 176 |
| Msa0189770 | AT4G15090.4 | 31.922 | 307 | 197 | 4 | 117 | 418 | 387 | 686 | 1.13e-47 | 176 |
| Msa0189770 | AT3G06250.2 | 35.458 | 251 | 147 | 2 | 120 | 358 | 487 | 734 | 4.50e-47 | 174 |
| Msa0189770 | AT3G06250.2 | 45.679 | 81 | 41 | 1 | 21 | 98 | 2 | 82 | 3.79e-14 | 75.5 |
| Msa0189770 | AT3G06250.1 | 35.458 | 251 | 147 | 2 | 120 | 358 | 487 | 734 | 4.50e-47 | 174 |
| Msa0189770 | AT3G06250.1 | 45.679 | 81 | 41 | 1 | 21 | 98 | 2 | 82 | 3.79e-14 | 75.5 |
| Msa0189770 | AT3G06250.3 | 35.458 | 251 | 147 | 2 | 120 | 358 | 487 | 734 | 4.50e-47 | 174 |
| Msa0189770 | AT3G06250.3 | 45.679 | 81 | 41 | 1 | 21 | 98 | 2 | 82 | 3.79e-14 | 75.5 |
| Msa0189770 | AT3G22170.2 | 31.525 | 295 | 192 | 3 | 112 | 404 | 389 | 675 | 3.01e-45 | 169 |
| Msa0189770 | AT3G22170.1 | 31.525 | 295 | 192 | 3 | 112 | 404 | 389 | 675 | 3.01e-45 | 169 |
| Msa0189770 | AT1G76320.3 | 33.213 | 277 | 176 | 3 | 120 | 396 | 327 | 594 | 1.86e-42 | 160 |
| Msa0189770 | AT1G76320.1 | 32.857 | 280 | 179 | 3 | 117 | 396 | 324 | 594 | 2.20e-42 | 160 |
| Msa0189770 | AT1G76320.4 | 32.857 | 280 | 179 | 3 | 117 | 396 | 324 | 594 | 2.20e-42 | 160 |
| Msa0189770 | AT1G76320.2 | 32.857 | 280 | 179 | 3 | 117 | 396 | 324 | 594 | 2.37e-42 | 160 |
| Msa0189770 | AT4G19990.1 | 32.343 | 303 | 182 | 6 | 129 | 421 | 290 | 579 | 5.43e-38 | 147 |
| Msa0189770 | AT4G19990.7 | 32.343 | 303 | 182 | 6 | 129 | 421 | 361 | 650 | 5.94e-38 | 148 |
| Msa0189770 | AT4G19990.5 | 32.343 | 303 | 182 | 6 | 129 | 421 | 347 | 636 | 6.08e-38 | 147 |
| Msa0189770 | AT4G19990.3 | 32.343 | 303 | 182 | 6 | 129 | 421 | 347 | 636 | 6.64e-38 | 147 |
| Msa0189770 | AT4G19990.4 | 32.343 | 303 | 182 | 6 | 129 | 421 | 347 | 636 | 6.64e-38 | 147 |
| Msa0189770 | AT4G19990.6 | 32.343 | 303 | 182 | 6 | 129 | 421 | 347 | 636 | 6.70e-38 | 147 |
| Msa0189770 | AT4G19990.2 | 32.343 | 303 | 182 | 6 | 129 | 421 | 347 | 636 | 6.70e-38 | 147 |
| Msa0189770 | AT1G52520.1 | 29.043 | 303 | 180 | 6 | 118 | 400 | 408 | 695 | 1.95e-37 | 146 |
| Msa0189770 | AT1G80010.1 | 28.522 | 291 | 196 | 5 | 120 | 403 | 435 | 720 | 6.22e-33 | 133 |
| Msa0189770 | AT2G32250.6 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 5.33e-32 | 130 |
| Msa0189770 | AT2G32250.1 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 5.33e-32 | 130 |
| Msa0189770 | AT2G32250.3 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 5.33e-32 | 130 |
| Msa0189770 | AT2G32250.2 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 5.57e-32 | 130 |
| Msa0189770 | AT2G32250.4 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 5.57e-32 | 130 |
| Msa0189770 | AT2G32250.8 | 30.000 | 220 | 151 | 3 | 118 | 336 | 291 | 508 | 5.73e-32 | 130 |
| Msa0189770 | AT2G32250.7 | 30.000 | 220 | 151 | 3 | 118 | 336 | 291 | 508 | 6.42e-32 | 130 |
| Msa0189770 | AT2G32250.5 | 30.000 | 220 | 151 | 3 | 118 | 336 | 332 | 549 | 6.93e-32 | 130 |
| Msa0189770 | AT5G28530.4 | 32.057 | 209 | 134 | 3 | 128 | 335 | 352 | 553 | 1.91e-28 | 119 |
| Msa0189770 | AT5G28530.1 | 32.057 | 209 | 134 | 3 | 128 | 335 | 415 | 616 | 3.52e-28 | 118 |
| Msa0189770 | AT1G10240.2 | 31.193 | 218 | 144 | 2 | 118 | 335 | 391 | 602 | 7.26e-28 | 117 |
| Msa0189770 | AT1G10240.1 | 31.193 | 218 | 144 | 2 | 118 | 335 | 391 | 602 | 7.26e-28 | 117 |
| Msa0189770 | AT5G28530.5 | 31.579 | 209 | 131 | 3 | 128 | 335 | 352 | 549 | 8.58e-28 | 117 |
| Msa0189770 | AT5G28530.3 | 31.579 | 209 | 131 | 3 | 128 | 335 | 415 | 612 | 1.99e-27 | 116 |
| Msa0189770 | AT5G28530.2 | 31.579 | 209 | 131 | 3 | 128 | 335 | 415 | 612 | 1.99e-27 | 116 |
Find 83 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATACTTTCACTTCTT+TGG | 0.142920 | 2_1:+5213346 | None:intergenic |
| GAAAATGTTTAGAATATTTC+AGG | 0.197001 | 2_1:-5213142 | Msa0189770:CDS |
| CTCTCTTTCCTTGTTGTAAT+GGG | 0.205656 | 2_1:+5213248 | None:intergenic |
| TACCTTGTTTGATTTAAATT+TGG | 0.212206 | 2_1:+5212451 | None:intergenic |
| AATGGTAGTCCGTTATTTAT+AGG | 0.222226 | 2_1:+5214575 | None:intergenic |
| ATTGATAATTGAAGAGTTAC+AGG | 0.225787 | 2_1:-5212836 | Msa0189770:CDS |
| TTGTTCAAAGGAAGGGTTTC+GGG | 0.231331 | 2_1:-5214393 | Msa0189770:CDS |
| TTCATTGTTTAATAGCATTA+TGG | 0.254555 | 2_1:-5212788 | Msa0189770:CDS |
| TTGTAGTTCCTGTAAGAATA+AGG | 0.261668 | 2_1:-5212494 | Msa0189770:CDS |
| ATTCATACTTTCACTTCTTT+GGG | 0.265156 | 2_1:+5213347 | None:intergenic |
| GGTATGACCCTTATTCTTAC+AGG | 0.270362 | 2_1:+5212486 | None:intergenic |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 2_1:+5214544 | None:intergenic |
| TCTCTCTTTCCTTGTTGTAA+TGG | 0.285819 | 2_1:+5213247 | None:intergenic |
| AGAACAGACGGAATGATAAT+TGG | 0.340924 | 2_1:-5214428 | Msa0189770:CDS |
| TTTGTCGCAGAAGAAGTTAA+AGG | 0.347626 | 2_1:-5213096 | Msa0189770:CDS |
| TATACTCCATTCGAGCAAAA+TGG | 0.347854 | 2_1:-5213416 | Msa0189770:CDS |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 2_1:+5214602 | None:intergenic |
| TTTGCGAATGAAAAGCAGTT+TGG | 0.393660 | 2_1:-5212542 | Msa0189770:CDS |
| ACTCCTCATTAGATTCTTCA+AGG | 0.398693 | 2_1:+5212662 | None:intergenic |
| TAGAAGAATTTGATTCTGAA+TGG | 0.406738 | 2_1:-5213491 | Msa0189770:CDS |
| CAGATTAAAGATGACAGATA+TGG | 0.414073 | 2_1:-5214660 | Msa0189770:CDS |
| TTTGATGCTTCTTCTTCCAT+TGG | 0.427301 | 2_1:+5213177 | None:intergenic |
| CCTCCACTTGCGGCAACTAA+AGG | 0.427492 | 2_1:-5212577 | Msa0189770:CDS |
| TAAATTTGGACATTTACGTT+TGG | 0.434583 | 2_1:+5212465 | None:intergenic |
| ATATTTCAGGATGAATTAGT+TGG | 0.438960 | 2_1:-5213129 | Msa0189770:CDS |
| CTCCACTTGCGGCAACTAAA+GGG | 0.445658 | 2_1:-5212576 | Msa0189770:CDS |
| TGTAGTTCCTGTAAGAATAA+GGG | 0.447200 | 2_1:-5212493 | Msa0189770:CDS |
| TTTGTTCAAAGGAAGGGTTT+CGG | 0.447784 | 2_1:-5214394 | Msa0189770:CDS |
| AGAAGAATTTGATTCTGAAT+GGG | 0.459561 | 2_1:-5213490 | Msa0189770:CDS |
| CCTTGTTGTAATGGGCATCA+AGG | 0.462957 | 2_1:+5213256 | None:intergenic |
| GAAGCAATGATAGATACATA+TGG | 0.475667 | 2_1:-5213468 | Msa0189770:CDS |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 2_1:-5214543 | Msa0189770:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 2_1:-5214502 | Msa0189770:CDS |
| GGATATAAAGTTCGCAAAAG+TGG | 0.480862 | 2_1:+5213198 | None:intergenic |
| CTTGTTGTAATGGGCATCAA+GGG | 0.482324 | 2_1:+5213257 | None:intergenic |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 2_1:+5214545 | None:intergenic |
| CTCTGTAGAACATACTGTGA+TGG | 0.500827 | 2_1:+5212895 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 2_1:+5214535 | None:intergenic |
| CACAGTATGTTCTACAGAGA+TGG | 0.508769 | 2_1:-5212891 | Msa0189770:CDS |
| GTGTCAGACATGATGAAACT+AGG | 0.509088 | 2_1:-5214337 | Msa0189770:CDS |
| TTCAGAATCAAATTCTTCTA+CGG | 0.510630 | 2_1:+5213494 | None:intergenic |
| TTTGCGAACTTTATATCCAA+TGG | 0.514843 | 2_1:-5213193 | Msa0189770:CDS |
| CACCCTTTAGTTGCCGCAAG+TGG | 0.517654 | 2_1:+5212574 | None:intergenic |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 2_1:+5214536 | None:intergenic |
| TGTGTCACAAACTTGCTCAA+TGG | 0.518813 | 2_1:+5213291 | None:intergenic |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 2_1:+5214511 | None:intergenic |
| TAAAGAGTTTCTTTGTTCAA+AGG | 0.523442 | 2_1:-5214405 | Msa0189770:CDS |
| GACATGGATCCTATAAATAA+CGG | 0.523874 | 2_1:-5214584 | Msa0189770:CDS |
| CCTTTAGTTGCCGCAAGTGG+AGG | 0.524296 | 2_1:+5212577 | None:intergenic |
| GAGTTTCTTTGTTCAAAGGA+AGG | 0.524715 | 2_1:-5214401 | Msa0189770:CDS |
| AAATCATGACGTACATAAGC+AGG | 0.530663 | 2_1:+5213390 | None:intergenic |
| AGTTTCTTTGTTCAAAGGAA+GGG | 0.533222 | 2_1:-5214400 | Msa0189770:CDS |
| CATACTTTCACTTCTTTGGG+TGG | 0.534169 | 2_1:+5213350 | None:intergenic |
| ATGGGTTGCAAGATAATCAA+TGG | 0.535566 | 2_1:-5213449 | Msa0189770:CDS |
| TCACTTGAACTAGCTGAAAG+AGG | 0.543111 | 2_1:-5212760 | Msa0189770:CDS |
| ATTGAAGAGTTACAGGAAGG+AGG | 0.545024 | 2_1:-5212829 | Msa0189770:CDS |
| AAGCAATGATAGATACATAT+GGG | 0.546295 | 2_1:-5213467 | Msa0189770:CDS |
| TAGTGAAGTGTCAACATACA+AGG | 0.553752 | 2_1:-5213070 | Msa0189770:CDS |
| ATTCTTCTACGGTCGTACAT+AGG | 0.554757 | 2_1:+5213505 | None:intergenic |
| CGTAGGAGTAGTTCATGGAT+AGG | 0.556421 | 2_1:-5214759 | None:intergenic |
| AACTAGCTGAAAGAGGTTCG+CGG | 0.560322 | 2_1:-5212753 | Msa0189770:CDS |
| TCAAAAGTCACATAGTAGCT+AGG | 0.564291 | 2_1:+5213024 | None:intergenic |
| TTTGCATGACCCTCCACTTG+CGG | 0.565228 | 2_1:-5212587 | Msa0189770:CDS |
| TCTGTAGAACATACTGTGAT+GGG | 0.565415 | 2_1:+5212896 | None:intergenic |
| GAACCTTGAAGAATCTAATG+AGG | 0.570212 | 2_1:-5212665 | Msa0189770:CDS |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 2_1:-5214600 | Msa0189770:CDS |
| ATAATTGAAGAGTTACAGGA+AGG | 0.574561 | 2_1:-5212832 | Msa0189770:CDS |
| TGTCAGACATGATGAAACTA+GGG | 0.577056 | 2_1:-5214336 | Msa0189770:intron |
| CTGTTCTTGATTTAGTAACA+CGG | 0.577898 | 2_1:+5214444 | None:intergenic |
| CTTTAGTTGCCGCAAGTGGA+GGG | 0.581188 | 2_1:+5212578 | None:intergenic |
| AGTAACACGGCCCATGCGAA+AGG | 0.583261 | 2_1:+5214457 | None:intergenic |
| AAGCATCAAAAGTTTATACA+AGG | 0.598083 | 2_1:-5213164 | Msa0189770:CDS |
| GTTACTAAATCAAGAACAGA+CGG | 0.612323 | 2_1:-5214440 | Msa0189770:CDS |
| TACATCATCAGAACAAGCCA+TGG | 0.620956 | 2_1:+5214625 | None:intergenic |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 2_1:-5214517 | Msa0189770:CDS |
| AAAAGGTACGCTAAGAACAA+AGG | 0.638535 | 2_1:-5214485 | Msa0189770:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 2_1:+5214547 | None:intergenic |
| CCTTGATGCCCATTACAACA+AGG | 0.647582 | 2_1:-5213256 | Msa0189770:CDS |
| ATCATCAGAACAAGCCATGG+TGG | 0.649034 | 2_1:+5214628 | None:intergenic |
| GTCCAAATTTAAATCAAACA+AGG | 0.663173 | 2_1:-5212453 | Msa0189770:CDS |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 2_1:+5214546 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 2_1:-5214522 | Msa0189770:CDS |
| TATGGATGAAGATTCCACCA+TGG | 0.721549 | 2_1:-5214642 | Msa0189770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr2_1:5213861-5213880 | Msa0189770:intron | 10.0% |
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr2_1:5213861-5213880 | Msa0189770:intron | 10.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr2_1:5212902-5212921 | Msa0189770:CDS | 15.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr2_1:5212902-5212921 | Msa0189770:CDS | 15.0% |
| !!! | ATTTAAAATGCTAGAAACAA+AGG | + | chr2_1:5212491-5212510 | None:intergenic | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr2_1:5213206-5213225 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr2_1:5213270-5213289 | Msa0189770:CDS | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | - | chr2_1:5213307-5213326 | Msa0189770:CDS | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr2_1:5213352-5213371 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr2_1:5213581-5213600 | Msa0189770:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr2_1:5214053-5214072 | Msa0189770:intron | 20.0% |
| !!! | GAGAATAAACATTTTTCTTA+AGG | + | chr2_1:5214278-5214297 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAGCATTAA+GGG | + | chr2_1:5214331-5214350 | None:intergenic | 20.0% |
| !! | TTCATTGTTTAATAGCATTA+TGG | - | chr2_1:5214407-5214426 | Msa0189770:CDS | 20.0% |
| !!! | TACCTTGTTTGATTTAAATT+TGG | + | chr2_1:5214747-5214766 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGCTAGAAACAA+AGG | + | chr2_1:5212491-5212510 | None:intergenic | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr2_1:5213206-5213225 | None:intergenic | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr2_1:5213270-5213289 | Msa0189770:CDS | 20.0% |
| !!! | AAAATGGCATACAAATATTT+TGG | - | chr2_1:5213307-5213326 | Msa0189770:CDS | 20.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr2_1:5213352-5213371 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr2_1:5213581-5213600 | Msa0189770:intron | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr2_1:5214053-5214072 | Msa0189770:intron | 20.0% |
| !!! | GAGAATAAACATTTTTCTTA+AGG | + | chr2_1:5214278-5214297 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAGCATTAA+GGG | + | chr2_1:5214331-5214350 | None:intergenic | 20.0% |
| !! | TTCATTGTTTAATAGCATTA+TGG | - | chr2_1:5214407-5214426 | Msa0189770:CDS | 20.0% |
| !!! | TACCTTGTTTGATTTAAATT+TGG | + | chr2_1:5214747-5214766 | None:intergenic | 20.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr2_1:5212790-5212809 | Msa0189770:CDS | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr2_1:5212906-5212925 | Msa0189770:CDS | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr2_1:5212907-5212926 | Msa0189770:CDS | 25.0% |
| !!! | GGTTGTTTCAAGATTTTTAA+GGG | - | chr2_1:5212928-5212947 | Msa0189770:CDS | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr2_1:5212955-5212974 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr2_1:5213072-5213091 | Msa0189770:CDS | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr2_1:5213160-5213179 | Msa0189770:CDS | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr2_1:5213237-5213256 | Msa0189770:CDS | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr2_1:5213269-5213288 | Msa0189770:CDS | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr2_1:5213315-5213334 | Msa0189770:CDS | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr2_1:5213409-5213428 | Msa0189770:CDS | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr2_1:5213452-5213471 | Msa0189770:CDS | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr2_1:5213577-5213596 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr2_1:5213704-5213723 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr2_1:5213704-5213723 | Msa0189770:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr2_1:5213705-5213724 | Msa0189770:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr2_1:5213728-5213747 | Msa0189770:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr2_1:5213851-5213870 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr2_1:5213852-5213871 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr2_1:5214031-5214050 | Msa0189770:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr2_1:5214066-5214085 | Msa0189770:intron | 25.0% |
| !!! | TTGTCACAAGTTTGATTTTT+TGG | - | chr2_1:5214221-5214240 | Msa0189770:intron | 25.0% |
| !!! | TGTCACAAGTTTGATTTTTT+GGG | - | chr2_1:5214222-5214241 | Msa0189770:intron | 25.0% |
| !! | CTTTTTCTTTCTTAGCATTA+AGG | + | chr2_1:5214332-5214351 | None:intergenic | 25.0% |
| ! | GCTAAGAAAGAAAAAGTAAA+AGG | - | chr2_1:5214336-5214355 | Msa0189770:intron | 25.0% |
| !! | ATTGATAATTGAAGAGTTAC+AGG | - | chr2_1:5214359-5214378 | Msa0189770:CDS | 25.0% |
| ! | TAAATTTGGACATTTACGTT+TGG | + | chr2_1:5214733-5214752 | None:intergenic | 25.0% |
| ! | GTCCAAATTTAAATCAAACA+AGG | - | chr2_1:5214742-5214761 | Msa0189770:intron | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr2_1:5212790-5212809 | Msa0189770:CDS | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr2_1:5212906-5212925 | Msa0189770:CDS | 25.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr2_1:5212907-5212926 | Msa0189770:CDS | 25.0% |
| !!! | GGTTGTTTCAAGATTTTTAA+GGG | - | chr2_1:5212928-5212947 | Msa0189770:CDS | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr2_1:5212955-5212974 | None:intergenic | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr2_1:5213072-5213091 | Msa0189770:CDS | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr2_1:5213160-5213179 | Msa0189770:CDS | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr2_1:5213237-5213256 | Msa0189770:CDS | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr2_1:5213269-5213288 | Msa0189770:CDS | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr2_1:5213315-5213334 | Msa0189770:CDS | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr2_1:5213409-5213428 | Msa0189770:CDS | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr2_1:5213452-5213471 | Msa0189770:CDS | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr2_1:5213577-5213596 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr2_1:5213704-5213723 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr2_1:5213704-5213723 | Msa0189770:intron | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr2_1:5213705-5213724 | Msa0189770:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr2_1:5213728-5213747 | Msa0189770:intron | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr2_1:5213851-5213870 | None:intergenic | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr2_1:5213852-5213871 | None:intergenic | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr2_1:5214031-5214050 | Msa0189770:intron | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr2_1:5214066-5214085 | Msa0189770:intron | 25.0% |
| !!! | TTGTCACAAGTTTGATTTTT+TGG | - | chr2_1:5214221-5214240 | Msa0189770:intron | 25.0% |
| !!! | TGTCACAAGTTTGATTTTTT+GGG | - | chr2_1:5214222-5214241 | Msa0189770:intron | 25.0% |
| !! | CTTTTTCTTTCTTAGCATTA+AGG | + | chr2_1:5214332-5214351 | None:intergenic | 25.0% |
| ! | GCTAAGAAAGAAAAAGTAAA+AGG | - | chr2_1:5214336-5214355 | Msa0189770:intron | 25.0% |
| !! | ATTGATAATTGAAGAGTTAC+AGG | - | chr2_1:5214359-5214378 | Msa0189770:CDS | 25.0% |
| ! | TAAATTTGGACATTTACGTT+TGG | + | chr2_1:5214733-5214752 | None:intergenic | 25.0% |
| ! | GTCCAAATTTAAATCAAACA+AGG | - | chr2_1:5214742-5214761 | Msa0189770:intron | 25.0% |
| CAGATTAAAGATGACAGATA+TGG | - | chr2_1:5212535-5212554 | Msa0189770:CDS | 30.0% | |
| GACATGGATCCTATAAATAA+CGG | - | chr2_1:5212611-5212630 | Msa0189770:CDS | 30.0% | |
| AATGGTAGTCCGTTATTTAT+AGG | + | chr2_1:5212623-5212642 | None:intergenic | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr2_1:5212754-5212773 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr2_1:5212755-5212774 | Msa0189770:CDS | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr2_1:5212795-5212814 | Msa0189770:CDS | 30.0% | |
| !! | GGGTTGTTTCAAGATTTTTA+AGG | - | chr2_1:5212927-5212946 | Msa0189770:CDS | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | + | chr2_1:5213067-5213086 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | - | chr2_1:5213214-5213233 | Msa0189770:CDS | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr2_1:5213215-5213234 | Msa0189770:CDS | 30.0% | |
| !!! | TTTTTGGTTGTGCTTTGTTA+TGG | - | chr2_1:5213425-5213444 | Msa0189770:CDS | 30.0% |
| !! | TTTTGGTTGTGCTTTGTTAT+GGG | - | chr2_1:5213426-5213445 | Msa0189770:CDS | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr2_1:5213517-5213536 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | - | chr2_1:5213727-5213746 | Msa0189770:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr2_1:5214002-5214021 | Msa0189770:intron | 30.0% | |
| ATAATTGAAGAGTTACAGGA+AGG | - | chr2_1:5214363-5214382 | Msa0189770:CDS | 30.0% | |
| ! | CGCAATATCATGATGTTTTT+CGG | + | chr2_1:5214469-5214488 | None:intergenic | 30.0% |
| TTGTAGTTCCTGTAAGAATA+AGG | - | chr2_1:5214701-5214720 | Msa0189770:intron | 30.0% | |
| TGTAGTTCCTGTAAGAATAA+GGG | - | chr2_1:5214702-5214721 | Msa0189770:intron | 30.0% | |
| CAGATTAAAGATGACAGATA+TGG | - | chr2_1:5212535-5212554 | Msa0189770:CDS | 30.0% | |
| GACATGGATCCTATAAATAA+CGG | - | chr2_1:5212611-5212630 | Msa0189770:CDS | 30.0% | |
| AATGGTAGTCCGTTATTTAT+AGG | + | chr2_1:5212623-5212642 | None:intergenic | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr2_1:5212754-5212773 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr2_1:5212755-5212774 | Msa0189770:CDS | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr2_1:5212795-5212814 | Msa0189770:CDS | 30.0% | |
| !! | GGGTTGTTTCAAGATTTTTA+AGG | - | chr2_1:5212927-5212946 | Msa0189770:CDS | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+AGG | + | chr2_1:5213067-5213086 | None:intergenic | 30.0% |
| AATTGTCAATTGAAGAATCC+TGG | - | chr2_1:5213214-5213233 | Msa0189770:CDS | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr2_1:5213215-5213234 | Msa0189770:CDS | 30.0% | |
| !!! | TTTTTGGTTGTGCTTTGTTA+TGG | - | chr2_1:5213425-5213444 | Msa0189770:CDS | 30.0% |
| !! | TTTTGGTTGTGCTTTGTTAT+GGG | - | chr2_1:5213426-5213445 | Msa0189770:CDS | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr2_1:5213517-5213536 | None:intergenic | 30.0% |
| GAAGCAATGATAGATACATA+TGG | - | chr2_1:5213727-5213746 | Msa0189770:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr2_1:5214002-5214021 | Msa0189770:intron | 30.0% | |
| ATAATTGAAGAGTTACAGGA+AGG | - | chr2_1:5214363-5214382 | Msa0189770:CDS | 30.0% | |
| ! | CGCAATATCATGATGTTTTT+CGG | + | chr2_1:5214469-5214488 | None:intergenic | 30.0% |
| TTGTAGTTCCTGTAAGAATA+AGG | - | chr2_1:5214701-5214720 | Msa0189770:intron | 30.0% | |
| TGTAGTTCCTGTAAGAATAA+GGG | - | chr2_1:5214702-5214721 | Msa0189770:intron | 30.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr2_1:5212710-5212729 | Msa0189770:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr2_1:5212728-5212747 | Msa0189770:CDS | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr2_1:5212767-5212786 | Msa0189770:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr2_1:5212794-5212813 | Msa0189770:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr2_1:5212801-5212820 | Msa0189770:CDS | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr2_1:5212859-5212878 | Msa0189770:CDS | 35.0% | |
| ! | CGAAGAAACTGACAACTTTT+AGG | + | chr2_1:5212977-5212996 | None:intergenic | 35.0% |
| TGAAATGCATAGAAAAACCC+AGG | + | chr2_1:5213235-5213254 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr2_1:5213281-5213300 | Msa0189770:CDS | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | - | chr2_1:5213291-5213310 | Msa0189770:CDS | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | + | chr2_1:5213391-5213410 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr2_1:5213392-5213411 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | - | chr2_1:5213520-5213539 | Msa0189770:CDS | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr2_1:5213524-5213543 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr2_1:5213625-5213644 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr2_1:5213746-5213765 | Msa0189770:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | - | chr2_1:5213779-5213798 | Msa0189770:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | + | chr2_1:5213808-5213827 | None:intergenic | 35.0% | |
| ! | CTCTCTTTCCTTGTTGTAAT+GGG | + | chr2_1:5213950-5213969 | None:intergenic | 35.0% |
| ! | TCTCTCTTTCCTTGTTGTAA+TGG | + | chr2_1:5213951-5213970 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr2_1:5214000-5214019 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr2_1:5214021-5214040 | None:intergenic | 35.0% | |
| TTTGTCGCAGAAGAAGTTAA+AGG | - | chr2_1:5214099-5214118 | Msa0189770:intron | 35.0% | |
| ! | TAGTGAAGTGTCAACATACA+AGG | - | chr2_1:5214125-5214144 | Msa0189770:intron | 35.0% |
| TCAAAAGTCACATAGTAGCT+AGG | + | chr2_1:5214174-5214193 | None:intergenic | 35.0% | |
| TCTGTAGAACATACTGTGAT+GGG | + | chr2_1:5214302-5214321 | None:intergenic | 35.0% | |
| GAACCTTGAAGAATCTAATG+AGG | - | chr2_1:5214530-5214549 | Msa0189770:CDS | 35.0% | |
| ACTCCTCATTAGATTCTTCA+AGG | + | chr2_1:5214536-5214555 | None:intergenic | 35.0% | |
| TTTGCGAATGAAAAGCAGTT+TGG | - | chr2_1:5214653-5214672 | Msa0189770:CDS | 35.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr2_1:5212710-5212729 | Msa0189770:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr2_1:5212728-5212747 | Msa0189770:CDS | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr2_1:5212767-5212786 | Msa0189770:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr2_1:5212794-5212813 | Msa0189770:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr2_1:5212801-5212820 | Msa0189770:CDS | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr2_1:5212859-5212878 | Msa0189770:CDS | 35.0% | |
| ! | CGAAGAAACTGACAACTTTT+AGG | + | chr2_1:5212977-5212996 | None:intergenic | 35.0% |
| TGAAATGCATAGAAAAACCC+AGG | + | chr2_1:5213235-5213254 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr2_1:5213281-5213300 | Msa0189770:CDS | 35.0% |
| ! | GGTTGATTCAAGGTCTAAAA+TGG | - | chr2_1:5213291-5213310 | Msa0189770:CDS | 35.0% |
| TGATGATTAACTCCAGTGAA+GGG | + | chr2_1:5213391-5213410 | None:intergenic | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr2_1:5213392-5213411 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | - | chr2_1:5213520-5213539 | Msa0189770:CDS | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr2_1:5213524-5213543 | None:intergenic | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr2_1:5213625-5213644 | None:intergenic | 35.0% | |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr2_1:5213746-5213765 | Msa0189770:intron | 35.0% |
| TATACTCCATTCGAGCAAAA+TGG | - | chr2_1:5213779-5213798 | Msa0189770:intron | 35.0% | |
| AAATCATGACGTACATAAGC+AGG | + | chr2_1:5213808-5213827 | None:intergenic | 35.0% | |
| ! | CTCTCTTTCCTTGTTGTAAT+GGG | + | chr2_1:5213950-5213969 | None:intergenic | 35.0% |
| ! | TCTCTCTTTCCTTGTTGTAA+TGG | + | chr2_1:5213951-5213970 | None:intergenic | 35.0% |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr2_1:5214000-5214019 | None:intergenic | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr2_1:5214021-5214040 | None:intergenic | 35.0% | |
| TTTGTCGCAGAAGAAGTTAA+AGG | - | chr2_1:5214099-5214118 | Msa0189770:intron | 35.0% | |
| ! | TAGTGAAGTGTCAACATACA+AGG | - | chr2_1:5214125-5214144 | Msa0189770:intron | 35.0% |
| TCAAAAGTCACATAGTAGCT+AGG | + | chr2_1:5214174-5214193 | None:intergenic | 35.0% | |
| TCTGTAGAACATACTGTGAT+GGG | + | chr2_1:5214302-5214321 | None:intergenic | 35.0% | |
| GAACCTTGAAGAATCTAATG+AGG | - | chr2_1:5214530-5214549 | Msa0189770:CDS | 35.0% | |
| ACTCCTCATTAGATTCTTCA+AGG | + | chr2_1:5214536-5214555 | None:intergenic | 35.0% | |
| TTTGCGAATGAAAAGCAGTT+TGG | - | chr2_1:5214653-5214672 | Msa0189770:CDS | 35.0% | |
| TATGGATGAAGATTCCACCA+TGG | - | chr2_1:5212553-5212572 | Msa0189770:CDS | 40.0% | |
| TACATCATCAGAACAAGCCA+TGG | + | chr2_1:5212573-5212592 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr2_1:5212653-5212672 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr2_1:5212662-5212681 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr2_1:5212663-5212682 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr2_1:5212693-5212712 | Msa0189770:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr2_1:5212727-5212746 | Msa0189770:CDS | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr2_1:5212802-5212821 | Msa0189770:CDS | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr2_1:5212858-5212877 | Msa0189770:CDS | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | - | chr2_1:5212863-5212882 | Msa0189770:CDS | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr2_1:5213034-5213053 | Msa0189770:CDS | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr2_1:5213079-5213098 | Msa0189770:CDS | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr2_1:5213097-5213116 | Msa0189770:CDS | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | - | chr2_1:5213247-5213266 | Msa0189770:CDS | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr2_1:5213484-5213503 | Msa0189770:CDS | 40.0% | |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr2_1:5213693-5213712 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr2_1:5213788-5213807 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr2_1:5213814-5213833 | Msa0189770:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | + | chr2_1:5213848-5213867 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr2_1:5213907-5213926 | None:intergenic | 40.0% |
| !! | CTTGTTGTAATGGGCATCAA+GGG | + | chr2_1:5213941-5213960 | None:intergenic | 40.0% |
| CTCTGTAGAACATACTGTGA+TGG | + | chr2_1:5214303-5214322 | None:intergenic | 40.0% | |
| CACAGTATGTTCTACAGAGA+TGG | - | chr2_1:5214304-5214323 | Msa0189770:intron | 40.0% | |
| ATTGAAGAGTTACAGGAAGG+AGG | - | chr2_1:5214366-5214385 | Msa0189770:CDS | 40.0% | |
| TCACTTGAACTAGCTGAAAG+AGG | - | chr2_1:5214435-5214454 | Msa0189770:CDS | 40.0% | |
| ATGCCAAAAACGTCTGACAT+CGG | - | chr2_1:5214579-5214598 | Msa0189770:CDS | 40.0% | |
| ! | ATACCGATGTCAGACGTTTT+TGG | + | chr2_1:5214585-5214604 | None:intergenic | 40.0% |
| ! | CTTTTCATTCGCAAAGTTCG+TGG | + | chr2_1:5214648-5214667 | None:intergenic | 40.0% |
| ! | AGTTTGGAGTTGCGCAAAAA+AGG | - | chr2_1:5214669-5214688 | Msa0189770:intron | 40.0% |
| GGTATGACCCTTATTCTTAC+AGG | + | chr2_1:5214712-5214731 | None:intergenic | 40.0% | |
| TATGGATGAAGATTCCACCA+TGG | - | chr2_1:5212553-5212572 | Msa0189770:CDS | 40.0% | |
| TACATCATCAGAACAAGCCA+TGG | + | chr2_1:5212573-5212592 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr2_1:5212653-5212672 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr2_1:5212662-5212681 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr2_1:5212663-5212682 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr2_1:5212693-5212712 | Msa0189770:CDS | 40.0% | |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr2_1:5212727-5212746 | Msa0189770:CDS | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr2_1:5212802-5212821 | Msa0189770:CDS | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr2_1:5212858-5212877 | Msa0189770:CDS | 40.0% | |
| AGACATGATGAAACTAGGGT+AGG | - | chr2_1:5212863-5212882 | Msa0189770:CDS | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr2_1:5213034-5213053 | Msa0189770:CDS | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr2_1:5213079-5213098 | Msa0189770:CDS | 40.0% | |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr2_1:5213097-5213116 | Msa0189770:CDS | 40.0% |
| GCATTTCAAATGGATGCTGA+AGG | - | chr2_1:5213247-5213266 | Msa0189770:CDS | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr2_1:5213484-5213503 | Msa0189770:CDS | 40.0% | |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr2_1:5213693-5213712 | None:intergenic | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr2_1:5213788-5213807 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr2_1:5213814-5213833 | Msa0189770:intron | 40.0% |
| CATACTTTCACTTCTTTGGG+TGG | + | chr2_1:5213848-5213867 | None:intergenic | 40.0% | |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr2_1:5213907-5213926 | None:intergenic | 40.0% |
| !! | CTTGTTGTAATGGGCATCAA+GGG | + | chr2_1:5213941-5213960 | None:intergenic | 40.0% |
| CTCTGTAGAACATACTGTGA+TGG | + | chr2_1:5214303-5214322 | None:intergenic | 40.0% | |
| CACAGTATGTTCTACAGAGA+TGG | - | chr2_1:5214304-5214323 | Msa0189770:intron | 40.0% | |
| ATTGAAGAGTTACAGGAAGG+AGG | - | chr2_1:5214366-5214385 | Msa0189770:CDS | 40.0% | |
| TCACTTGAACTAGCTGAAAG+AGG | - | chr2_1:5214435-5214454 | Msa0189770:CDS | 40.0% | |
| ATGCCAAAAACGTCTGACAT+CGG | - | chr2_1:5214579-5214598 | Msa0189770:CDS | 40.0% | |
| ! | ATACCGATGTCAGACGTTTT+TGG | + | chr2_1:5214585-5214604 | None:intergenic | 40.0% |
| ! | CTTTTCATTCGCAAAGTTCG+TGG | + | chr2_1:5214648-5214667 | None:intergenic | 40.0% |
| ! | AGTTTGGAGTTGCGCAAAAA+AGG | - | chr2_1:5214669-5214688 | Msa0189770:intron | 40.0% |
| GGTATGACCCTTATTCTTAC+AGG | + | chr2_1:5214712-5214731 | None:intergenic | 40.0% | |
| ATCATCAGAACAAGCCATGG+TGG | + | chr2_1:5212570-5212589 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr2_1:5212596-5212615 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr2_1:5212595-5212614 | Msa0189770:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr2_1:5212652-5212671 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr2_1:5212654-5212673 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr2_1:5212652-5212671 | Msa0189770:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr2_1:5212871-5212890 | Msa0189770:CDS | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr2_1:5213040-5213059 | Msa0189770:CDS | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr2_1:5213082-5213101 | Msa0189770:CDS | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr2_1:5213382-5213401 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr2_1:5213467-5213486 | Msa0189770:CDS | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | - | chr2_1:5213480-5213499 | Msa0189770:CDS | 45.0% | |
| !! | CCTTGTTGTAATGGGCATCA+AGG | + | chr2_1:5213942-5213961 | None:intergenic | 45.0% |
| CCTTGATGCCCATTACAACA+AGG | - | chr2_1:5213939-5213958 | Msa0189770:intron | 45.0% | |
| AACTAGCTGAAAGAGGTTCG+CGG | - | chr2_1:5214442-5214461 | Msa0189770:CDS | 45.0% | |
| ATCATCAGAACAAGCCATGG+TGG | + | chr2_1:5212570-5212589 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr2_1:5212596-5212615 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr2_1:5212595-5212614 | Msa0189770:CDS | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr2_1:5212652-5212671 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr2_1:5212654-5212673 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr2_1:5212652-5212671 | Msa0189770:CDS | 45.0% |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr2_1:5212871-5212890 | Msa0189770:CDS | 45.0% | |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr2_1:5213040-5213059 | Msa0189770:CDS | 45.0% |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr2_1:5213082-5213101 | Msa0189770:CDS | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr2_1:5213382-5213401 | None:intergenic | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr2_1:5213467-5213486 | Msa0189770:CDS | 45.0% | |
| GCGTACTTGGTTAGAAGCAA+TGG | - | chr2_1:5213480-5213499 | Msa0189770:CDS | 45.0% | |
| !! | CCTTGTTGTAATGGGCATCA+AGG | + | chr2_1:5213942-5213961 | None:intergenic | 45.0% |
| CCTTGATGCCCATTACAACA+AGG | - | chr2_1:5213939-5213958 | Msa0189770:intron | 45.0% | |
| AACTAGCTGAAAGAGGTTCG+CGG | - | chr2_1:5214442-5214461 | Msa0189770:CDS | 45.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr2_1:5212651-5212670 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr2_1:5212673-5212692 | Msa0189770:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr2_1:5212678-5212697 | Msa0189770:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr2_1:5212687-5212706 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr2_1:5213376-5213395 | Msa0189770:CDS | 50.0% |
| TATCACGTATGCGATCGCGA+AGG | - | chr2_1:5213546-5213565 | Msa0189770:intron | 50.0% | |
| !! | GATCGCGAAGGTGTTTCCAA+AGG | - | chr2_1:5213558-5213577 | Msa0189770:intron | 50.0% |
| TTTGCATGACCCTCCACTTG+CGG | - | chr2_1:5214608-5214627 | Msa0189770:CDS | 50.0% | |
| CTTTAGTTGCCGCAAGTGGA+GGG | + | chr2_1:5214620-5214639 | None:intergenic | 50.0% | |
| CTCCACTTGCGGCAACTAAA+GGG | - | chr2_1:5214619-5214638 | Msa0189770:CDS | 50.0% | |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr2_1:5212651-5212670 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr2_1:5212673-5212692 | Msa0189770:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr2_1:5212678-5212697 | Msa0189770:CDS | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr2_1:5212687-5212706 | None:intergenic | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr2_1:5213376-5213395 | Msa0189770:CDS | 50.0% |
| TATCACGTATGCGATCGCGA+AGG | - | chr2_1:5213546-5213565 | Msa0189770:intron | 50.0% | |
| !! | GATCGCGAAGGTGTTTCCAA+AGG | - | chr2_1:5213558-5213577 | Msa0189770:intron | 50.0% |
| TTTGCATGACCCTCCACTTG+CGG | - | chr2_1:5214608-5214627 | Msa0189770:CDS | 50.0% | |
| CTTTAGTTGCCGCAAGTGGA+GGG | + | chr2_1:5214620-5214639 | None:intergenic | 50.0% | |
| CTCCACTTGCGGCAACTAAA+GGG | - | chr2_1:5214619-5214638 | Msa0189770:CDS | 50.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr2_1:5212641-5212660 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr2_1:5212647-5212666 | Msa0189770:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | + | chr2_1:5212741-5212760 | None:intergenic | 55.0% | |
| CCTTTAGTTGCCGCAAGTGG+AGG | + | chr2_1:5214621-5214640 | None:intergenic | 55.0% | |
| CCTCCACTTGCGGCAACTAA+AGG | - | chr2_1:5214618-5214637 | Msa0189770:CDS | 55.0% | |
| CACCCTTTAGTTGCCGCAAG+TGG | + | chr2_1:5214624-5214643 | None:intergenic | 55.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr2_1:5212641-5212660 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr2_1:5212647-5212666 | Msa0189770:CDS | 55.0% | |
| AGTAACACGGCCCATGCGAA+AGG | + | chr2_1:5212741-5212760 | None:intergenic | 55.0% | |
| CCTTTAGTTGCCGCAAGTGG+AGG | + | chr2_1:5214621-5214640 | None:intergenic | 55.0% | |
| CCTCCACTTGCGGCAACTAA+AGG | - | chr2_1:5214618-5214637 | Msa0189770:CDS | 55.0% | |
| CACCCTTTAGTTGCCGCAAG+TGG | + | chr2_1:5214624-5214643 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 5212450 | 5214767 | 5212450 | ID=Msa0189770;Name=Msa0189770 |
| chr2_1 | mRNA | 5212450 | 5214767 | 5212450 | ID=Msa0189770-mRNA-1;Parent=Msa0189770;Name=Msa0189770-mRNA-1;_AED=0.17;_eAED=0.34;_QI=0|0|0|0.66|1|1|3|0|481 |
| chr2_1 | exon | 5214760 | 5214767 | 5214760 | ID=Msa0189770-mRNA-1:exon:2385;Parent=Msa0189770-mRNA-1 |
| chr2_1 | exon | 5214337 | 5214679 | 5214337 | ID=Msa0189770-mRNA-1:exon:2384;Parent=Msa0189770-mRNA-1 |
| chr2_1 | exon | 5212450 | 5213544 | 5212450 | ID=Msa0189770-mRNA-1:exon:2383;Parent=Msa0189770-mRNA-1 |
| chr2_1 | CDS | 5214760 | 5214767 | 5214760 | ID=Msa0189770-mRNA-1:cds;Parent=Msa0189770-mRNA-1 |
| chr2_1 | CDS | 5214337 | 5214679 | 5214337 | ID=Msa0189770-mRNA-1:cds;Parent=Msa0189770-mRNA-1 |
| chr2_1 | CDS | 5212450 | 5213544 | 5212450 | ID=Msa0189770-mRNA-1:cds;Parent=Msa0189770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
