Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189820 | XP_003593218.2 | 95.603 | 796 | 33 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189820 | sp|Q9LME6|MBD8_ARATH | 45.752 | 153 | 61 | 3 | 133 | 263 | 238 | 390 | 5.12e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189820 | G7IPJ6 | 95.603 | 796 | 33 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1437 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0189820 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189820 | MtrunA17_Chr2g0279291 | 95.603 | 796 | 33 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1437 |
| Msa0189820 | MtrunA17_Chr3g0115871 | 38.060 | 268 | 117 | 10 | 47 | 271 | 56 | 317 | 1.95e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189820 | AT1G22310.1 | 45.752 | 153 | 61 | 3 | 133 | 263 | 139 | 291 | 1.09e-34 | 138 |
| Msa0189820 | AT1G22310.2 | 45.752 | 153 | 61 | 3 | 133 | 263 | 238 | 390 | 5.20e-34 | 137 |
Find 232 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTAATCTTACCTATA+TGG | 0.176238 | 2_1:+5276626 | Msa0189820:intron |
| CGATTTCGCGTGTAGATTTA+AGG | 0.177513 | 2_1:-5276938 | None:intergenic |
| GTTGAGGGGTTTGATCATTC+TGG | 0.186677 | 2_1:+5279465 | Msa0189820:CDS |
| AATAAGAGTGACTTGAAAAT+TGG | 0.224444 | 2_1:+5279624 | Msa0189820:CDS |
| CATTGATTTGGCGGCGTTAT+CGG | 0.229881 | 2_1:+5277292 | Msa0189820:CDS |
| ATTGTTGATGCTTCTGATTT+TGG | 0.254403 | 2_1:+5277440 | Msa0189820:CDS |
| AAGGAGGAAGAGGAGTTGTT+AGG | 0.257264 | 2_1:+5277365 | Msa0189820:CDS |
| ACAAGAAGTTACGTTAAATA+TGG | 0.261725 | 2_1:+5280615 | Msa0189820:CDS |
| TCCAGTCGGTGAACAGAAAA+TGG | 0.266533 | 2_1:+5279224 | Msa0189820:CDS |
| GAGAAGGACGGAGGGGTTAA+AGG | 0.270308 | 2_1:+5277346 | Msa0189820:CDS |
| AGGAGGAAGAGGAGTTGTTA+GGG | 0.296961 | 2_1:+5277366 | Msa0189820:CDS |
| AAAGAATCCAAAGATTGTTC+TGG | 0.310627 | 2_1:-5279756 | None:intergenic |
| AGAAGAGAAAATCCAGCTTT+TGG | 0.314324 | 2_1:+5281274 | Msa0189820:three_prime_UTR |
| ATTCAAGGAAATTGCCTTGC+TGG | 0.314369 | 2_1:+5278714 | Msa0189820:CDS |
| TTTATTGCCGCAGATATATA+AGG | 0.318369 | 2_1:+5277528 | Msa0189820:CDS |
| AGTCCCTTGCTTCATTCATC+TGG | 0.322751 | 2_1:+5279513 | Msa0189820:CDS |
| GGTATCCCCAGAACAATCTT+TGG | 0.329312 | 2_1:+5279749 | Msa0189820:CDS |
| CCTTTACCTTCAGAAGTATC+AGG | 0.329892 | 2_1:-5279426 | None:intergenic |
| AGAAAATGTGGTCCAATCTA+AGG | 0.338186 | 2_1:+5279713 | Msa0189820:CDS |
| TTGAGGGGTTTGATCATTCT+GGG | 0.341962 | 2_1:+5279466 | Msa0189820:CDS |
| TCCTCATTGACAGGGGTTCC+AGG | 0.343875 | 2_1:+5280459 | Msa0189820:intron |
| TTGATATTCTCCAGTCCTAA+TGG | 0.345479 | 2_1:+5278457 | Msa0189820:intron |
| AAACGGTGTTGTCATTGATT+TGG | 0.350314 | 2_1:+5277280 | Msa0189820:CDS |
| ACCAGACACATTTGAGTTAG+TGG | 0.353621 | 2_1:-5278671 | None:intergenic |
| GCTTCGGAATCCTTCAATTC+CGG | 0.357751 | 2_1:+5277151 | Msa0189820:CDS |
| GGAAATTGCCTTGCTGGAAA+TGG | 0.362080 | 2_1:+5278720 | Msa0189820:CDS |
| TTCTGTTGCCCGCGAGGAGC+AGG | 0.367007 | 2_1:+5278630 | Msa0189820:CDS |
| TTCTGGTTGCACTAATACTA+AGG | 0.367939 | 2_1:+5279572 | Msa0189820:CDS |
| GAGGAGAGCTGAAGATTTGC+CGG | 0.368944 | 2_1:+5278999 | Msa0189820:CDS |
| TCAGTAGTCACTCTCTGTTC+CGG | 0.374463 | 2_1:-5278583 | None:intergenic |
| TTTGGTGATGTGTTGCCTTT+GGG | 0.376749 | 2_1:+5277458 | Msa0189820:CDS |
| AATTTCAACTTCACTGTTTG+CGG | 0.382763 | 2_1:+5276775 | Msa0189820:five_prime_UTR |
| TCCTTCACCTCCGGAATTGA+AGG | 0.383220 | 2_1:-5277161 | None:intergenic |
| GACAATTACAACAGTGATAC+AGG | 0.384204 | 2_1:-5281451 | None:intergenic |
| TTTGTTAATCTTACCTATAT+GGG | 0.385161 | 2_1:+5276627 | Msa0189820:intron |
| GAGTGATTTGGTTGGGCAGT+GGG | 0.390198 | 2_1:+5277394 | Msa0189820:CDS |
| GCCGGGTCAGCCTAATGTCC+TGG | 0.392917 | 2_1:+5279017 | Msa0189820:CDS |
| TGAGTGATTTGGTTGGGCAG+TGG | 0.396024 | 2_1:+5277393 | Msa0189820:CDS |
| GGGGAAGTAGGAGGAGGAAG+AGG | 0.404028 | 2_1:+5277414 | Msa0189820:CDS |
| TATCTTCTAACCTCAATTCC+TGG | 0.404525 | 2_1:-5280477 | None:intergenic |
| GTTGATAGAGTGCTCAATTA+TGG | 0.408438 | 2_1:+5281298 | Msa0189820:three_prime_UTR |
| ACCGAAAGTGAAAACGCATT+TGG | 0.408495 | 2_1:+5277238 | Msa0189820:CDS |
| CGTCTCTAATGAACGATTCA+AGG | 0.411445 | 2_1:+5278699 | Msa0189820:CDS |
| TCTTGATGTGTCAACTGAAT+TGG | 0.411782 | 2_1:+5280540 | Msa0189820:CDS |
| TGTTGTAATTGTCTTAGTCT+TGG | 0.412694 | 2_1:+5281461 | Msa0189820:three_prime_UTR |
| CTCGCTATCTCCGCCGCAAA+CGG | 0.418387 | 2_1:-5277326 | None:intergenic |
| TCCAAGAAGAGTGAAAATTC+TGG | 0.419209 | 2_1:+5279555 | Msa0189820:CDS |
| GACAGAAACTGCTGTCCATT+AGG | 0.421132 | 2_1:-5278472 | None:intergenic |
| TTGGGCAGTGGGGAAGTAGG+AGG | 0.422115 | 2_1:+5277405 | Msa0189820:CDS |
| AGCTTCTTCTTAGTTTGAAA+AGG | 0.426234 | 2_1:+5277486 | Msa0189820:CDS |
| GTCTAAAGATGGCCAGCATT+TGG | 0.427912 | 2_1:-5280796 | None:intergenic |
| GATGGAGTTATAATTAAAGA+TGG | 0.429529 | 2_1:+5278889 | Msa0189820:CDS |
| CTTCTCTGATGAACTGTTTG+AGG | 0.429943 | 2_1:-5277106 | None:intergenic |
| TGCTCAAAACTCTATTATAG+AGG | 0.430329 | 2_1:+5279110 | Msa0189820:CDS |
| CGGGCAACAGAAGCAGCAGC+AGG | 0.430626 | 2_1:-5278619 | None:intergenic |
| CGGTGTTGTCATTGATTTGG+CGG | 0.432904 | 2_1:+5277283 | Msa0189820:CDS |
| GTCATGTTGGGATTCATGTT+AGG | 0.439001 | 2_1:+5278968 | Msa0189820:CDS |
| CCAACCGCAATTTCTGAAAC+AGG | 0.442236 | 2_1:-5279171 | None:intergenic |
| TCCATCTTCGTGATCCTTGA+AGG | 0.449923 | 2_1:-5279072 | None:intergenic |
| CCGAGTTGTTGATGCAAAGA+TGG | 0.451107 | 2_1:+5279347 | Msa0189820:CDS |
| TGGTTGGGCAGTGGGGAAGT+AGG | 0.452036 | 2_1:+5277402 | Msa0189820:CDS |
| GCCACTAACTCAAATGTGTC+TGG | 0.452185 | 2_1:+5278670 | Msa0189820:CDS |
| AAGAATCCAAAGATTGTTCT+GGG | 0.453262 | 2_1:-5279755 | None:intergenic |
| TCCTCTATTGTTCCATCCAT+CGG | 0.454254 | 2_1:-5279309 | None:intergenic |
| GAATTTCCATTGGCATTGCC+TGG | 0.455401 | 2_1:+5277182 | Msa0189820:CDS |
| AAGGAGTGAAAATGTACTTC+CGG | 0.455412 | 2_1:+5278564 | Msa0189820:CDS |
| TCTTCTGCTCCCAGGACATT+AGG | 0.455500 | 2_1:-5279027 | None:intergenic |
| CATTACACACTAGTTGTGTA+TGG | 0.456408 | 2_1:-5281502 | None:intergenic |
| CTCTTCCTCACTTCACCACC+AGG | 0.456452 | 2_1:-5277200 | None:intergenic |
| CTTGGTTCATCCGTTTCAGA+TGG | 0.457726 | 2_1:+5278871 | Msa0189820:CDS |
| GGAGGGGTTAAAGGAGGAAG+AGG | 0.459659 | 2_1:+5277355 | Msa0189820:CDS |
| GGACCCAGCGCTGTGGTTGA+AGG | 0.460801 | 2_1:-5276985 | None:intergenic |
| AAAACACTTTATGACAGAAC+TGG | 0.462546 | 2_1:-5278924 | None:intergenic |
| GCGGTGGTCGGAGGGGAGAG+TGG | 0.463550 | 2_1:-5277069 | None:intergenic |
| GACAGGGGTTCCAGGAATTG+AGG | 0.466880 | 2_1:+5280467 | Msa0189820:intron |
| CTTAGTTTGAAAAGGAAAGA+TGG | 0.472588 | 2_1:+5277494 | Msa0189820:CDS |
| CTGTTCACCGACTGGAGACT+CGG | 0.473622 | 2_1:-5279217 | None:intergenic |
| AATTATAACTCCATCTGAAA+CGG | 0.473735 | 2_1:-5278881 | None:intergenic |
| TCAACCTTCAACCACAGCGC+TGG | 0.476614 | 2_1:+5276981 | Msa0189820:CDS |
| GAAATACAATCAGATTCCGT+TGG | 0.478566 | 2_1:+5280709 | Msa0189820:CDS |
| GCGCTGTGGTTGAAGGTTGA+TGG | 0.479110 | 2_1:-5276978 | None:intergenic |
| CTCTGGTCAAATCAATGTGT+TGG | 0.479845 | 2_1:+5280762 | Msa0189820:CDS |
| TTTGGCGGCGTTATCGGAGG+TGG | 0.480395 | 2_1:+5277298 | Msa0189820:CDS |
| CTTACGAATAAACAGGATTG+TGG | 0.480599 | 2_1:-5281392 | None:intergenic |
| GAAGTGAGGAAGAGGAAGAG+AGG | 0.480995 | 2_1:+5277209 | Msa0189820:CDS |
| CCCAGGACATTAGGCTGACC+CGG | 0.482805 | 2_1:-5279018 | None:intergenic |
| TGTAATTGTCTTAGTCTTGG+AGG | 0.484027 | 2_1:+5281464 | Msa0189820:three_prime_UTR |
| GAAGGTGTCTCATCCGTGAC+TGG | 0.485030 | 2_1:-5279054 | None:intergenic |
| TCGGAGGGGAGAGTGGGAGT+TGG | 0.485461 | 2_1:-5277062 | None:intergenic |
| AAGTGAGGAAGAGGAAGAGA+GGG | 0.486983 | 2_1:+5277210 | Msa0189820:CDS |
| AGGGGTTAGAAACCTTAGAT+TGG | 0.489305 | 2_1:-5279725 | None:intergenic |
| CGTCGCTACAATAGTCATGT+TGG | 0.489692 | 2_1:+5278955 | Msa0189820:CDS |
| GAAGTAGGAGGAGGAAGAGG+AGG | 0.489968 | 2_1:+5277417 | Msa0189820:CDS |
| AAAGGAAAGATGGTCGTGCT+TGG | 0.491157 | 2_1:+5277504 | Msa0189820:CDS |
| ACAATACTACATGATCATAT+CGG | 0.491248 | 2_1:-5281419 | None:intergenic |
| TAGTCTTGGAGGCCGTTCAA+TGG | 0.491740 | 2_1:+5281475 | Msa0189820:three_prime_UTR |
| TCCTTCAATTCCGGAGGTGA+AGG | 0.492334 | 2_1:+5277160 | Msa0189820:CDS |
| TTTGACACTATTTGAAAGAA+GGG | 0.493665 | 2_1:+5276657 | Msa0189820:five_prime_UTR |
| GTCAAACACAAGTCCCATAT+AGG | 0.495149 | 2_1:-5276640 | None:intergenic |
| TTACGAATAAACAGGATTGT+GGG | 0.495318 | 2_1:-5281391 | None:intergenic |
| GTTTGACACTATTTGAAAGA+AGG | 0.497444 | 2_1:+5276656 | Msa0189820:five_prime_UTR |
| GTCGCTACAATAGTCATGTT+GGG | 0.498127 | 2_1:+5278956 | Msa0189820:CDS |
| TCTTCTGATGAATAGACAAC+AGG | 0.501464 | 2_1:-5278831 | None:intergenic |
| GGCAGTGGGGAAGTAGGAGG+AGG | 0.502422 | 2_1:+5277408 | Msa0189820:CDS |
| AGTTCGACACTGTTGAGCTT+CGG | 0.505502 | 2_1:+5277135 | Msa0189820:CDS |
| TGAGGAAGAGGAAGAGAGGG+AGG | 0.505615 | 2_1:+5277213 | Msa0189820:CDS |
| AGCTCACAACCACATGTGTA+TGG | 0.505650 | 2_1:+5280650 | Msa0189820:CDS |
| ATACAACATACAGCGATTCA+AGG | 0.505903 | 2_1:-5281363 | None:intergenic |
| ATCGATGATGATGCGGTGGT+CGG | 0.506767 | 2_1:-5277081 | None:intergenic |
| TTTCAGAATTAACAGCATCA+TGG | 0.507095 | 2_1:-5280690 | None:intergenic |
| TATCATTTCTCTTAACAAAG+AGG | 0.508422 | 2_1:-5276432 | None:intergenic |
| AGTTATGCATTATACCTTGT+CGG | 0.511195 | 2_1:-5279793 | None:intergenic |
| GGAGGTGGAGCATCCGTTTG+CGG | 0.516406 | 2_1:+5277313 | Msa0189820:CDS |
| GATGTGGCGCTGACTGTTGA+GGG | 0.517199 | 2_1:+5279450 | Msa0189820:CDS |
| AACATAGAAGAAGATGAAGA+AGG | 0.517254 | 2_1:+5276809 | Msa0189820:exon |
| AGGAGAGCTGAAGATTTGCC+GGG | 0.517482 | 2_1:+5279000 | Msa0189820:CDS |
| TGCTGCTTCTGTTGCCCGCG+AGG | 0.518233 | 2_1:+5278624 | Msa0189820:CDS |
| AACGATTACCAGTCTAAAGA+TGG | 0.519030 | 2_1:-5280807 | None:intergenic |
| CGGTGGTCGGAGGGGAGAGT+GGG | 0.519469 | 2_1:-5277068 | None:intergenic |
| AGCTCAACAGTGTCGAACTT+CGG | 0.519517 | 2_1:-5277131 | None:intergenic |
| AAAATGGAAAAGAGCTTGAC+TGG | 0.520687 | 2_1:+5279240 | Msa0189820:CDS |
| AGAAGAATCAACGGTTCAGA+TGG | 0.521404 | 2_1:+5276833 | Msa0189820:CDS |
| GTCCCTTGCTTCATTCATCT+GGG | 0.522300 | 2_1:+5279514 | Msa0189820:CDS |
| CAACCTTCAACCACAGCGCT+GGG | 0.522768 | 2_1:+5276982 | Msa0189820:CDS |
| GGAGGTGAAGGAATTTCCAT+TGG | 0.522903 | 2_1:+5277172 | Msa0189820:CDS |
| TTCATGTTAGGAATTATTTG+AGG | 0.525350 | 2_1:+5278980 | Msa0189820:CDS |
| AATGGAAATTCCTTCACCTC+CGG | 0.525587 | 2_1:-5277170 | None:intergenic |
| ACCTTCAAGGATCACGAAGA+TGG | 0.528471 | 2_1:+5279071 | Msa0189820:CDS |
| TATTATAGAGGATTCTATCA+TGG | 0.528948 | 2_1:+5279122 | Msa0189820:CDS |
| CTTGAATCGTTCATTAGAGA+CGG | 0.533348 | 2_1:-5278698 | None:intergenic |
| CCGGGTCAGCCTAATGTCCT+GGG | 0.533615 | 2_1:+5279018 | Msa0189820:CDS |
| ATCTAAGGTTTCTAACCCCT+CGG | 0.534183 | 2_1:+5279728 | Msa0189820:CDS |
| CGCGACATCGACGGTGAGGA+CGG | 0.534354 | 2_1:-5277022 | None:intergenic |
| GACAGTGGATCACCAAATGC+TGG | 0.535223 | 2_1:+5280784 | Msa0189820:CDS |
| CCTGTTTCAGAAATTGCGGT+TGG | 0.535860 | 2_1:+5279171 | Msa0189820:CDS |
| TCTGGTTGCACTAATACTAA+GGG | 0.537167 | 2_1:+5279573 | Msa0189820:CDS |
| TGATGTGGCGCTGACTGTTG+AGG | 0.537401 | 2_1:+5279449 | Msa0189820:CDS |
| AGGACGGGAGTAGGTGCGGT+GGG | 0.537864 | 2_1:-5277006 | None:intergenic |
| ACCGATGGATGGAACAATAG+AGG | 0.540164 | 2_1:+5279308 | Msa0189820:CDS |
| TCGTTGGTCCTGCTCCTCGC+GGG | 0.541414 | 2_1:-5278638 | None:intergenic |
| GCATATTAATAGTGATCTAT+CGG | 0.544643 | 2_1:+5281592 | Msa0189820:three_prime_UTR |
| GAGATAGCGAGAAGGACGGA+GGG | 0.546960 | 2_1:+5277338 | Msa0189820:CDS |
| TCACGGATGAGACACCTTCA+AGG | 0.549275 | 2_1:+5279058 | Msa0189820:CDS |
| GTGATGTGTTGCCTTTGGGA+TGG | 0.549426 | 2_1:+5277462 | Msa0189820:CDS |
| ATTCATGTGTCCAGTTTGCA+AGG | 0.549705 | 2_1:+5280732 | Msa0189820:CDS |
| CAGCTTGACCTTTGATGAGA+AGG | 0.551090 | 2_1:+5278792 | Msa0189820:CDS |
| GGCAACAGAAGCAGCAGCAG+GGG | 0.553512 | 2_1:-5278617 | None:intergenic |
| CTGGAGACTCTTCTGCTCCC+AGG | 0.553635 | 2_1:-5279035 | None:intergenic |
| GTCGTTGGTCCTGCTCCTCG+CGG | 0.554081 | 2_1:-5278639 | None:intergenic |
| GCGACATCGACGGTGAGGAC+GGG | 0.557766 | 2_1:-5277021 | None:intergenic |
| AGTGATTTGGTTGGGCAGTG+GGG | 0.558863 | 2_1:+5277395 | Msa0189820:CDS |
| CCTGATACTTCTGAAGGTAA+AGG | 0.558865 | 2_1:+5279426 | Msa0189820:CDS |
| ATATGCATCCTTCTCATCAA+AGG | 0.563994 | 2_1:-5278800 | None:intergenic |
| AATCAACGGTTCAGATGGAA+TGG | 0.565745 | 2_1:+5276838 | Msa0189820:CDS |
| GAAAGTGAAAACGCATTTGG+AGG | 0.566521 | 2_1:+5277241 | Msa0189820:CDS |
| ACACTTCGATATATCTATGC+AGG | 0.569196 | 2_1:-5281323 | None:intergenic |
| GATACCTGTTTCAGAAATTG+CGG | 0.569571 | 2_1:+5279167 | Msa0189820:CDS |
| ATGATGATGCGGTGGTCGGA+GGG | 0.570896 | 2_1:-5277077 | None:intergenic |
| GCCAACTTCTAAAGAAAATG+TGG | 0.571874 | 2_1:+5279701 | Msa0189820:CDS |
| ACAACAAGGCGGTATCGACT+TGG | 0.574083 | 2_1:+5278853 | Msa0189820:CDS |
| GCGTGTAGATTTAAGGTCGA+AGG | 0.574947 | 2_1:-5276931 | None:intergenic |
| ACTCTATCAACTCCAAAAGC+TGG | 0.574976 | 2_1:-5281286 | None:intergenic |
| AGAGTGGGAGTTGGAAGAAG+CGG | 0.576797 | 2_1:-5277053 | None:intergenic |
| CCATCTTTGCATCAACAACT+CGG | 0.577011 | 2_1:-5279347 | None:intergenic |
| GAGGACGGGAGTAGGTGCGG+TGG | 0.578919 | 2_1:-5277007 | None:intergenic |
| AATGCTGGCCATCTTTAGAC+TGG | 0.579372 | 2_1:+5280799 | Msa0189820:exon |
| GGTGAGGACGGGAGTAGGTG+CGG | 0.580114 | 2_1:-5277010 | None:intergenic |
| TCTGGGAATCACATGAAACC+TGG | 0.581198 | 2_1:+5279531 | Msa0189820:CDS |
| TTCTGCATTCAGCTCCGACA+AGG | 0.583172 | 2_1:+5279779 | Msa0189820:CDS |
| GATTGTTCTGGGGATACCGA+GGG | 0.583211 | 2_1:-5279744 | None:intergenic |
| TCACCACCAGGCAATGCCAA+TGG | 0.583467 | 2_1:-5277188 | None:intergenic |
| GATGATGATGCGGTGGTCGG+AGG | 0.583551 | 2_1:-5277078 | None:intergenic |
| CGTGTATTTGCACATCTGCA+AGG | 0.583614 | 2_1:-5278747 | None:intergenic |
| CACAGTTACAAATCACTCAA+AGG | 0.590461 | 2_1:+5278545 | Msa0189820:CDS |
| GAAGAAGGAAGAAGAATCAA+CGG | 0.590986 | 2_1:+5276824 | Msa0189820:CDS |
| GTGTATGGAGTTCCATTGAA+CGG | 0.593102 | 2_1:-5281487 | None:intergenic |
| GGGCAACAGAAGCAGCAGCA+GGG | 0.593793 | 2_1:-5278618 | None:intergenic |
| AGGTAGTCCTCGTTTACCGA+TGG | 0.597128 | 2_1:+5279293 | Msa0189820:CDS |
| GCAAATGACATAGTGGTGCA+AGG | 0.597159 | 2_1:+5280562 | Msa0189820:CDS |
| GGAGATAGCGAGAAGGACGG+AGG | 0.599301 | 2_1:+5277337 | Msa0189820:CDS |
| AGCAGAAGAGTCTCCAGTCA+CGG | 0.602098 | 2_1:+5279041 | Msa0189820:CDS |
| AGTCCTCGTTTACCGATGGA+TGG | 0.602501 | 2_1:+5279297 | Msa0189820:CDS |
| TGATGATGCGGTGGTCGGAG+GGG | 0.603731 | 2_1:-5277076 | None:intergenic |
| TCCAAAACCTTATATATCTG+CGG | 0.604840 | 2_1:-5277535 | None:intergenic |
| TTCTGAAGGTAAAGGTGATG+TGG | 0.604907 | 2_1:+5279434 | Msa0189820:CDS |
| TGATTTGGCGGCGTTATCGG+AGG | 0.605133 | 2_1:+5277295 | Msa0189820:CDS |
| CTGGTGGTGAAGTGAGGAAG+AGG | 0.605528 | 2_1:+5277201 | Msa0189820:CDS |
| AAGGTTCTCCATTTCCAGCA+AGG | 0.609362 | 2_1:-5278728 | None:intergenic |
| AGGTATCGTATTTAGTGTAG+AGG | 0.610633 | 2_1:-5279151 | None:intergenic |
| CAAATGACATAGTGGTGCAA+GGG | 0.613652 | 2_1:+5280563 | Msa0189820:CDS |
| AACTGGACACATGAATCCAA+CGG | 0.616659 | 2_1:-5280725 | None:intergenic |
| ATTCCCAGATGAATGAAGCA+AGG | 0.616754 | 2_1:-5279517 | None:intergenic |
| ATCGTATTTAGTGTAGAGGA+TGG | 0.619864 | 2_1:-5279147 | None:intergenic |
| GATAGCTGCTATGATGTACC+TGG | 0.621105 | 2_1:+5279651 | Msa0189820:CDS |
| TCGGAATCCTTCAATTCCGG+AGG | 0.621454 | 2_1:+5277154 | Msa0189820:CDS |
| AGATTGTTCTGGGGATACCG+AGG | 0.623417 | 2_1:-5279745 | None:intergenic |
| TTCCCAGATGAATGAAGCAA+GGG | 0.624115 | 2_1:-5279516 | None:intergenic |
| TCGACGGTGAGGACGGGAGT+AGG | 0.625711 | 2_1:-5277015 | None:intergenic |
| TTTCCATTGGCATTGCCTGG+TGG | 0.626819 | 2_1:+5277185 | Msa0189820:CDS |
| CAAATCAATGTGTTGGACAG+TGG | 0.627499 | 2_1:+5280769 | Msa0189820:CDS |
| AAGGACGGAGGGGTTAAAGG+AGG | 0.627983 | 2_1:+5277349 | Msa0189820:CDS |
| GGCGGAGATAGCGAGAAGGA+CGG | 0.630693 | 2_1:+5277334 | Msa0189820:CDS |
| CTGGTTGCACTAATACTAAG+GGG | 0.632921 | 2_1:+5279574 | Msa0189820:CDS |
| GTGGGAGTTGGAAGAAGCGG+TGG | 0.634389 | 2_1:-5277050 | None:intergenic |
| TGAATTGGCAAATGACATAG+TGG | 0.638698 | 2_1:+5280555 | Msa0189820:CDS |
| AGAAGAAGCTTCCATCCCAA+AGG | 0.644423 | 2_1:-5277473 | None:intergenic |
| TGCGGTGGGACCCAGCGCTG+TGG | 0.645149 | 2_1:-5276992 | None:intergenic |
| TAGTGGCAACAATCTGTCGT+TGG | 0.652025 | 2_1:-5278654 | None:intergenic |
| ATGTGGCGCTGACTGTTGAG+GGG | 0.652083 | 2_1:+5279451 | Msa0189820:CDS |
| TTGTGATGCAGACTGAGCTG+AGG | 0.653285 | 2_1:-5280596 | None:intergenic |
| GGTGGAGCATCCGTTTGCGG+CGG | 0.658249 | 2_1:+5277316 | Msa0189820:CDS |
| CATTGCCTGGTGGTGAAGTG+AGG | 0.660449 | 2_1:+5277195 | Msa0189820:CDS |
| GTGGTGCGACGCGACATCGA+CGG | 0.662400 | 2_1:-5277031 | None:intergenic |
| ATCAAGTGAAAATATGAACA+AGG | 0.664405 | 2_1:+5281543 | Msa0189820:three_prime_UTR |
| GTTCCATCCATCGGTAAACG+AGG | 0.667007 | 2_1:-5279300 | None:intergenic |
| AGATAGCGAGAAGGACGGAG+GGG | 0.671249 | 2_1:+5277339 | Msa0189820:CDS |
| GATGCACCTGATACTTCTGA+AGG | 0.671872 | 2_1:+5279420 | Msa0189820:CDS |
| ACAACCACATGTGTATGGTG+TGG | 0.673155 | 2_1:+5280655 | Msa0189820:CDS |
| ACATGAACATTAGAAACACC+AGG | 0.677148 | 2_1:-5279669 | None:intergenic |
| CTATTCATCAGAAGACAACA+AGG | 0.677372 | 2_1:+5278839 | Msa0189820:CDS |
| ATTGTTCTGGGGATACCGAG+GGG | 0.684093 | 2_1:-5279743 | None:intergenic |
| GTTAGCGATCTAAATCAGCA+AGG | 0.685979 | 2_1:+5279273 | Msa0189820:CDS |
| TGGTTGCACTAATACTAAGG+GGG | 0.689364 | 2_1:+5279575 | Msa0189820:CDS |
| CATTCTGGGAGTGAACTGCA+AGG | 0.690541 | 2_1:+5279480 | Msa0189820:CDS |
| GCGACGCGACATCGACGGTG+AGG | 0.695548 | 2_1:-5277026 | None:intergenic |
| TTGCGGCGGAGATAGCGAGA+AGG | 0.699580 | 2_1:+5277330 | Msa0189820:CDS |
| TGAGGTAATCGATGATGATG+CGG | 0.701630 | 2_1:-5277088 | None:intergenic |
| ATAAATGCCGAGTCTCCAGT+CGG | 0.703380 | 2_1:+5279210 | Msa0189820:CDS |
| AGAATCCAAAGATTGTTCTG+GGG | 0.703845 | 2_1:-5279754 | None:intergenic |
| TATTCCACACCATACACATG+TGG | 0.705154 | 2_1:-5280659 | None:intergenic |
| GGTAATCGATGATGATGCGG+TGG | 0.707704 | 2_1:-5277085 | None:intergenic |
| TTCATCAGAAGACAACAAGG+CGG | 0.779484 | 2_1:+5278842 | Msa0189820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAGAAAAACAAAA+AGG | + | chr2_1:5276706-5276725 | Msa0189820:five_prime_UTR | 10.0% |
| !! | GAAAAAATTATTACTTTATT+TGG | + | chr2_1:5280052-5280071 | Msa0189820:intron | 10.0% |
| !! | AATTGATTATTTAATAACAA+TGG | + | chr2_1:5280841-5280860 | Msa0189820:intron | 10.0% |
| !!! | ATTTTATATTCTTCAGTTTT+AGG | + | chr2_1:5277557-5277576 | Msa0189820:intron | 15.0% |
| !! | TTTATACAAAAACACTTATA+TGG | - | chr2_1:5277682-5277701 | None:intergenic | 15.0% |
| !! | TAAAAGCAAATTATCATTAT+TGG | + | chr2_1:5280323-5280342 | Msa0189820:intron | 15.0% |
| !! | TTATTTAATAACAATGGTTT+CGG | + | chr2_1:5280847-5280866 | Msa0189820:intron | 15.0% |
| !! | TTTGTTAATCTTACCTATAT+GGG | + | chr2_1:5276627-5276646 | Msa0189820:intron | 20.0% |
| !!! | TGTTTGTTTTGTTGTTAATT+TGG | + | chr2_1:5277592-5277611 | Msa0189820:intron | 20.0% |
| !! | TAATGTTCTTTGCTTATTAA+TGG | + | chr2_1:5278013-5278032 | Msa0189820:intron | 20.0% |
| !! | AATGTTCTTTGCTTATTAAT+GGG | + | chr2_1:5278014-5278033 | Msa0189820:intron | 20.0% |
| !!! | AGCTATTTCTAAAACAAATT+TGG | + | chr2_1:5278139-5278158 | Msa0189820:intron | 20.0% |
| !!! | GCTATTTCTAAAACAAATTT+GGG | + | chr2_1:5278140-5278159 | Msa0189820:intron | 20.0% |
| !!! | TTTTTGTTTGGAACTAAATT+TGG | + | chr2_1:5278169-5278188 | Msa0189820:intron | 20.0% |
| !!! | TTTTGTTTGGAACTAAATTT+GGG | + | chr2_1:5278170-5278189 | Msa0189820:intron | 20.0% |
| !! | AATTTATCCTAAAGAGTTTA+TGG | + | chr2_1:5278282-5278301 | Msa0189820:intron | 20.0% |
| !!! | TTTTATTTTGTATTGATCCA+TGG | + | chr2_1:5279982-5280001 | Msa0189820:intron | 20.0% |
| !!! | TTTTGTTTTCTTGTGTTTTT+TGG | - | chr2_1:5281089-5281108 | None:intergenic | 20.0% |
| ! | TATCATTTCTCTTAACAAAG+AGG | - | chr2_1:5276435-5276454 | None:intergenic | 25.0% |
| !!! | AACCATTTTTTGACAACTTT+TGG | + | chr2_1:5276462-5276481 | Msa0189820:intron | 25.0% |
| !! | CTTTTATTGGTCAAAAACAA+TGG | - | chr2_1:5276547-5276566 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTTTCGCTTTTAT+TGG | - | chr2_1:5276560-5276579 | None:intergenic | 25.0% |
| ! | CAATAAAAGCGAAAAAAACA+AGG | + | chr2_1:5276558-5276577 | Msa0189820:intron | 25.0% |
| ! | CATATAGGTAAGATTAACAA+AGG | - | chr2_1:5276628-5276647 | None:intergenic | 25.0% |
| ! | CTTTGTTAATCTTACCTATA+TGG | + | chr2_1:5276626-5276645 | Msa0189820:intron | 25.0% |
| ! | TTTGACACTATTTGAAAGAA+GGG | + | chr2_1:5276657-5276676 | Msa0189820:five_prime_UTR | 25.0% |
| !!! | TTTTTTTCTTACACGAATGA+CGG | - | chr2_1:5276688-5276707 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAGATAGCTTA+TGG | + | chr2_1:5277792-5277811 | Msa0189820:intron | 25.0% |
| ! | ACAAATGACAGCTATATTTA+TGG | - | chr2_1:5277915-5277934 | None:intergenic | 25.0% |
| !! | TGTTATTTGAATCACAGAAT+TGG | + | chr2_1:5277938-5277957 | Msa0189820:intron | 25.0% |
| ! | TATACTGTTTATCCTAACAT+GGG | - | chr2_1:5278071-5278090 | None:intergenic | 25.0% |
| ! | TTATACTGTTTATCCTAACA+TGG | - | chr2_1:5278072-5278091 | None:intergenic | 25.0% |
| !!! | TTTGGGTATTACTTTTTGTT+TGG | + | chr2_1:5278157-5278176 | Msa0189820:intron | 25.0% |
| ! | CTTATTTCCATAAACTCTTT+AGG | - | chr2_1:5278292-5278311 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr2_1:5278306-5278325 | Msa0189820:intron | 25.0% |
| ! | AGCAAAAACAGATATGTTTA+TGG | - | chr2_1:5278395-5278414 | None:intergenic | 25.0% |
| ! | AATTATAACTCCATCTGAAA+CGG | - | chr2_1:5278884-5278903 | None:intergenic | 25.0% |
| ! | GATGGAGTTATAATTAAAGA+TGG | + | chr2_1:5278889-5278908 | Msa0189820:CDS | 25.0% |
| ! | TTCATGTTAGGAATTATTTG+AGG | + | chr2_1:5278980-5278999 | Msa0189820:CDS | 25.0% |
| ! | TATTATAGAGGATTCTATCA+TGG | + | chr2_1:5279122-5279141 | Msa0189820:CDS | 25.0% |
| ! | AATAAGAGTGACTTGAAAAT+TGG | + | chr2_1:5279624-5279643 | Msa0189820:CDS | 25.0% |
| ! | TCATATATGTTGCAAAATAG+AGG | + | chr2_1:5279841-5279860 | Msa0189820:intron | 25.0% |
| ! | ACTATGTCTCTAATATATTC+AGG | + | chr2_1:5279959-5279978 | Msa0189820:intron | 25.0% |
| ! | TTCTCTTTGTAAGATATATG+TGG | - | chr2_1:5280035-5280054 | None:intergenic | 25.0% |
| ! | TTGGGGAGATAATAAATTAT+AGG | + | chr2_1:5280087-5280106 | Msa0189820:intron | 25.0% |
| ! | GAGATAATAAATTATAGGTC+TGG | + | chr2_1:5280092-5280111 | Msa0189820:intron | 25.0% |
| ! | ACAAGAAGTTACGTTAAATA+TGG | + | chr2_1:5280615-5280634 | Msa0189820:CDS | 25.0% |
| ! | AAAAATAATAGCAGCAGATA+AGG | - | chr2_1:5280876-5280895 | None:intergenic | 25.0% |
| ! | AATCGCAAAGAATATGATAT+TGG | - | chr2_1:5281177-5281196 | None:intergenic | 25.0% |
| ! | ATTGAACTGCAAAAGTTTAA+AGG | - | chr2_1:5281220-5281239 | None:intergenic | 25.0% |
| ! | TCTTTATAAAAATCAGTAGC+AGG | + | chr2_1:5281242-5281261 | Msa0189820:three_prime_UTR | 25.0% |
| ! | ACAATACTACATGATCATAT+CGG | - | chr2_1:5281422-5281441 | None:intergenic | 25.0% |
| ! | ATCAAGTGAAAATATGAACA+AGG | + | chr2_1:5281543-5281562 | Msa0189820:three_prime_UTR | 25.0% |
| ! | GCATATTAATAGTGATCTAT+CGG | + | chr2_1:5281592-5281611 | Msa0189820:three_prime_UTR | 25.0% |
| GTCCAAAAGTTGTCAAAAAA+TGG | - | chr2_1:5276467-5276486 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr2_1:5276534-5276553 | None:intergenic | 30.0% | |
| GTTTGACACTATTTGAAAGA+AGG | + | chr2_1:5276656-5276675 | Msa0189820:five_prime_UTR | 30.0% | |
| AATTTCAACTTCACTGTTTG+CGG | + | chr2_1:5276775-5276794 | Msa0189820:five_prime_UTR | 30.0% | |
| AACATAGAAGAAGATGAAGA+AGG | + | chr2_1:5276809-5276828 | Msa0189820:exon | 30.0% | |
| GAAGAGATTGTGAACAAAAA+CGG | + | chr2_1:5277263-5277282 | Msa0189820:CDS | 30.0% | |
| ! | ATTGTTGATGCTTCTGATTT+TGG | + | chr2_1:5277440-5277459 | Msa0189820:CDS | 30.0% |
| ! | AGCTTCTTCTTAGTTTGAAA+AGG | + | chr2_1:5277486-5277505 | Msa0189820:CDS | 30.0% |
| ! | CTTAGTTTGAAAAGGAAAGA+TGG | + | chr2_1:5277494-5277513 | Msa0189820:CDS | 30.0% |
| TTTATTGCCGCAGATATATA+AGG | + | chr2_1:5277528-5277547 | Msa0189820:CDS | 30.0% | |
| TCCAAAACCTTATATATCTG+CGG | - | chr2_1:5277538-5277557 | None:intergenic | 30.0% | |
| AAGCTATCATGAAGAGTTTA+TGG | + | chr2_1:5277768-5277787 | Msa0189820:intron | 30.0% | |
| CAACTTATGGACATTTCATA+AGG | + | chr2_1:5278319-5278338 | Msa0189820:intron | 30.0% | |
| TATGCAGTAGTCAATAGATA+AGG | + | chr2_1:5278346-5278365 | Msa0189820:intron | 30.0% | |
| GATATGTTTATGGCATGTTT+GGG | - | chr2_1:5278385-5278404 | None:intergenic | 30.0% | |
| AGATATGTTTATGGCATGTT+TGG | - | chr2_1:5278386-5278405 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTGCTTGTTTGTTT+TGG | + | chr2_1:5278404-5278423 | Msa0189820:intron | 30.0% |
| AAAACACTTTATGACAGAAC+TGG | - | chr2_1:5278927-5278946 | None:intergenic | 30.0% | |
| !! | GTTCTGTCATAAAGTGTTTT+TGG | + | chr2_1:5278927-5278946 | Msa0189820:CDS | 30.0% |
| TGCTCAAAACTCTATTATAG+AGG | + | chr2_1:5279110-5279129 | Msa0189820:CDS | 30.0% | |
| !!! | GTTAGTTTTCTAGATAACAC+TGG | + | chr2_1:5279369-5279388 | Msa0189820:CDS | 30.0% |
| !! | ACCACATTTTCTTTAGAAGT+TGG | - | chr2_1:5279705-5279724 | None:intergenic | 30.0% |
| AAGAATCCAAAGATTGTTCT+GGG | - | chr2_1:5279758-5279777 | None:intergenic | 30.0% | |
| AAAGAATCCAAAGATTGTTC+TGG | - | chr2_1:5279759-5279778 | None:intergenic | 30.0% | |
| AGTTATGCATTATACCTTGT+CGG | - | chr2_1:5279796-5279815 | None:intergenic | 30.0% | |
| TAACTTATCCTTGCCATTAT+TGG | + | chr2_1:5279811-5279830 | Msa0189820:intron | 30.0% | |
| TATGTGGAAAACATTCAAGA+GGG | - | chr2_1:5280019-5280038 | None:intergenic | 30.0% | |
| ATATGTGGAAAACATTCAAG+AGG | - | chr2_1:5280020-5280039 | None:intergenic | 30.0% | |
| ATCTCGGCATCAATAAAAAA+TGG | - | chr2_1:5280118-5280137 | None:intergenic | 30.0% | |
| TTGTGTACTTTCAACAAACA+TGG | + | chr2_1:5280253-5280272 | Msa0189820:intron | 30.0% | |
| ! | TATGATTTTGCAAGTGTTCA+AGG | + | chr2_1:5280514-5280533 | Msa0189820:CDS | 30.0% |
| TTTCAGAATTAACAGCATCA+TGG | - | chr2_1:5280693-5280712 | None:intergenic | 30.0% | |
| TTACGAATAAACAGGATTGT+GGG | - | chr2_1:5281394-5281413 | None:intergenic | 30.0% | |
| TGTTGTAATTGTCTTAGTCT+TGG | + | chr2_1:5281461-5281480 | Msa0189820:three_prime_UTR | 30.0% | |
| GAAGAAGGAAGAAGAATCAA+CGG | + | chr2_1:5276824-5276843 | Msa0189820:CDS | 35.0% | |
| !!! | AAGGTTGATGGATCGATTTT+AGG | - | chr2_1:5276969-5276988 | None:intergenic | 35.0% |
| ! | TCCAAATGCGTTTTCACTTT+CGG | - | chr2_1:5277242-5277261 | None:intergenic | 35.0% |
| !! | AAACGGTGTTGTCATTGATT+TGG | + | chr2_1:5277280-5277299 | Msa0189820:CDS | 35.0% |
| !!! | GTTAGGGTTTTTGAGTGATT+TGG | + | chr2_1:5277382-5277401 | Msa0189820:CDS | 35.0% |
| !!! | GGTTTTTGAGTGATTTGGTT+GGG | + | chr2_1:5277387-5277406 | Msa0189820:CDS | 35.0% |
| ATGACATTAATGTGCTTTGC+TGG | + | chr2_1:5277616-5277635 | Msa0189820:intron | 35.0% | |
| AGACTATTTGAGAGAGCTTA+TGG | - | chr2_1:5277836-5277855 | None:intergenic | 35.0% | |
| TATGCAGTAGTCAATAGGTA+AGG | + | chr2_1:5277866-5277885 | Msa0189820:intron | 35.0% | |
| AAATTTGCGAGGGACTAAAA+TGG | + | chr2_1:5278199-5278218 | Msa0189820:intron | 35.0% | |
| AATTTGCGAGGGACTAAAAT+GGG | + | chr2_1:5278200-5278219 | Msa0189820:intron | 35.0% | |
| TTGATATTCTCCAGTCCTAA+TGG | + | chr2_1:5278457-5278476 | Msa0189820:intron | 35.0% | |
| CACAGTTACAAATCACTCAA+AGG | + | chr2_1:5278545-5278564 | Msa0189820:CDS | 35.0% | |
| AAGGAGTGAAAATGTACTTC+CGG | + | chr2_1:5278564-5278583 | Msa0189820:CDS | 35.0% | |
| CTTGAATCGTTCATTAGAGA+CGG | - | chr2_1:5278701-5278720 | None:intergenic | 35.0% | |
| ATATGCATCCTTCTCATCAA+AGG | - | chr2_1:5278803-5278822 | None:intergenic | 35.0% | |
| TCTTCTGATGAATAGACAAC+AGG | - | chr2_1:5278834-5278853 | None:intergenic | 35.0% | |
| CTATTCATCAGAAGACAACA+AGG | + | chr2_1:5278839-5278858 | Msa0189820:CDS | 35.0% | |
| !! | GTTTTGAGCAATTTCGATGA+GGG | - | chr2_1:5279100-5279119 | None:intergenic | 35.0% |
| !!! | AGTTTTGAGCAATTTCGATG+AGG | - | chr2_1:5279101-5279120 | None:intergenic | 35.0% |
| ATCGTATTTAGTGTAGAGGA+TGG | - | chr2_1:5279150-5279169 | None:intergenic | 35.0% | |
| ! | AGGTATCGTATTTAGTGTAG+AGG | - | chr2_1:5279154-5279173 | None:intergenic | 35.0% |
| GATACCTGTTTCAGAAATTG+CGG | + | chr2_1:5279167-5279186 | Msa0189820:CDS | 35.0% | |
| AAAATGGAAAAGAGCTTGAC+TGG | + | chr2_1:5279240-5279259 | Msa0189820:CDS | 35.0% | |
| TCCAAGAAGAGTGAAAATTC+TGG | + | chr2_1:5279555-5279574 | Msa0189820:CDS | 35.0% | |
| ! | ACCAGAATTTTCACTCTTCT+TGG | - | chr2_1:5279559-5279578 | None:intergenic | 35.0% |
| ! | TTCTGGTTGCACTAATACTA+AGG | + | chr2_1:5279572-5279591 | Msa0189820:CDS | 35.0% |
| TCTGGTTGCACTAATACTAA+GGG | + | chr2_1:5279573-5279592 | Msa0189820:CDS | 35.0% | |
| ACATGAACATTAGAAACACC+AGG | - | chr2_1:5279672-5279691 | None:intergenic | 35.0% | |
| ! | GCCAACTTCTAAAGAAAATG+TGG | + | chr2_1:5279701-5279720 | Msa0189820:CDS | 35.0% |
| AGAAAATGTGGTCCAATCTA+AGG | + | chr2_1:5279713-5279732 | Msa0189820:CDS | 35.0% | |
| AGAATCCAAAGATTGTTCTG+GGG | - | chr2_1:5279757-5279776 | None:intergenic | 35.0% | |
| ATATGAAACCCTGCCAATAA+TGG | - | chr2_1:5279827-5279846 | None:intergenic | 35.0% | |
| TTCCTACAAGTATCATAGCA+GGG | + | chr2_1:5279869-5279888 | Msa0189820:intron | 35.0% | |
| !! | TATTTGGGCATGCTTGTTTT+TGG | + | chr2_1:5280068-5280087 | Msa0189820:intron | 35.0% |
| !! | ATTTGGGCATGCTTGTTTTT+GGG | + | chr2_1:5280069-5280088 | Msa0189820:intron | 35.0% |
| CATGCAAGCATTCTTAATCT+CGG | - | chr2_1:5280134-5280153 | None:intergenic | 35.0% | |
| AAGAGTAGGAGAGATGTATA+AGG | - | chr2_1:5280177-5280196 | None:intergenic | 35.0% | |
| ATCTCTCCTACTCTTAGATT+AGG | + | chr2_1:5280182-5280201 | Msa0189820:intron | 35.0% | |
| AAGACACCTAATCTAAGAGT+AGG | - | chr2_1:5280191-5280210 | None:intergenic | 35.0% | |
| TACTCTTAGATTAGGTGTCT+TGG | + | chr2_1:5280190-5280209 | Msa0189820:intron | 35.0% | |
| ATTAGGTGTCTTGGAGATTT+AGG | + | chr2_1:5280199-5280218 | Msa0189820:intron | 35.0% | |
| ATTATTGGAATCTAGCGTCA+TGG | + | chr2_1:5280338-5280357 | Msa0189820:intron | 35.0% | |
| !! | TCTTGTTATTCCTCATTGAC+AGG | + | chr2_1:5280450-5280469 | Msa0189820:intron | 35.0% |
| !! | CTTGTTATTCCTCATTGACA+GGG | + | chr2_1:5280451-5280470 | Msa0189820:intron | 35.0% |
| ! | TTGTTATTCCTCATTGACAG+GGG | + | chr2_1:5280452-5280471 | Msa0189820:intron | 35.0% |
| TATCTTCTAACCTCAATTCC+TGG | - | chr2_1:5280480-5280499 | None:intergenic | 35.0% | |
| TCTTGATGTGTCAACTGAAT+TGG | + | chr2_1:5280540-5280559 | Msa0189820:CDS | 35.0% | |
| TGAATTGGCAAATGACATAG+TGG | + | chr2_1:5280555-5280574 | Msa0189820:CDS | 35.0% | |
| GAAATACAATCAGATTCCGT+TGG | + | chr2_1:5280709-5280728 | Msa0189820:CDS | 35.0% | |
| AACGATTACCAGTCTAAAGA+TGG | - | chr2_1:5280810-5280829 | None:intergenic | 35.0% | |
| GACTACGATCTATGTCAATT+AGG | - | chr2_1:5280903-5280922 | None:intergenic | 35.0% | |
| CACAAGAAAACAAAACAAGC+TGG | + | chr2_1:5281094-5281113 | Msa0189820:intron | 35.0% | |
| ! | AGAAGAGAAAATCCAGCTTT+TGG | + | chr2_1:5281274-5281293 | Msa0189820:three_prime_UTR | 35.0% |
| ! | GTTGATAGAGTGCTCAATTA+TGG | + | chr2_1:5281298-5281317 | Msa0189820:three_prime_UTR | 35.0% |
| ACACTTCGATATATCTATGC+AGG | - | chr2_1:5281326-5281345 | None:intergenic | 35.0% | |
| ATACAACATACAGCGATTCA+AGG | - | chr2_1:5281366-5281385 | None:intergenic | 35.0% | |
| CTTACGAATAAACAGGATTG+TGG | - | chr2_1:5281395-5281414 | None:intergenic | 35.0% | |
| ! | CGGTTTTCTTACGAATAAAC+AGG | - | chr2_1:5281402-5281421 | None:intergenic | 35.0% |
| GACAATTACAACAGTGATAC+AGG | - | chr2_1:5281454-5281473 | None:intergenic | 35.0% | |
| !! | TGTAATTGTCTTAGTCTTGG+AGG | + | chr2_1:5281464-5281483 | Msa0189820:three_prime_UTR | 35.0% |
| CATTACACACTAGTTGTGTA+TGG | - | chr2_1:5281505-5281524 | None:intergenic | 35.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr2_1:5276524-5276543 | None:intergenic | 40.0% | |
| GTCAAACACAAGTCCCATAT+AGG | - | chr2_1:5276643-5276662 | None:intergenic | 40.0% | |
| AGAAGAATCAACGGTTCAGA+TGG | + | chr2_1:5276833-5276852 | Msa0189820:CDS | 40.0% | |
| AATCAACGGTTCAGATGGAA+TGG | + | chr2_1:5276838-5276857 | Msa0189820:CDS | 40.0% | |
| CGATTTCGCGTGTAGATTTA+AGG | - | chr2_1:5276941-5276960 | None:intergenic | 40.0% | |
| ! | TGAGGTAATCGATGATGATG+CGG | - | chr2_1:5277091-5277110 | None:intergenic | 40.0% |
| CTTCTCTGATGAACTGTTTG+AGG | - | chr2_1:5277109-5277128 | None:intergenic | 40.0% | |
| AATGGAAATTCCTTCACCTC+CGG | - | chr2_1:5277173-5277192 | None:intergenic | 40.0% | |
| ACCGAAAGTGAAAACGCATT+TGG | + | chr2_1:5277238-5277257 | Msa0189820:CDS | 40.0% | |
| GAAAGTGAAAACGCATTTGG+AGG | + | chr2_1:5277241-5277260 | Msa0189820:CDS | 40.0% | |
| !!! | GGGTTTTTGAGTGATTTGGT+TGG | + | chr2_1:5277386-5277405 | Msa0189820:CDS | 40.0% |
| !!! | TTTTGGTGATGTGTTGCCTT+TGG | + | chr2_1:5277457-5277476 | Msa0189820:CDS | 40.0% |
| !! | TTTGGTGATGTGTTGCCTTT+GGG | + | chr2_1:5277458-5277477 | Msa0189820:CDS | 40.0% |
| ! | GCCGCAGATATATAAGGTTT+TGG | + | chr2_1:5277534-5277553 | Msa0189820:intron | 40.0% |
| AGCTCTCTCAAATAGTCTCA+TGG | + | chr2_1:5277838-5277857 | Msa0189820:intron | 40.0% | |
| GCTCTCTCAAATAGTCTCAT+GGG | + | chr2_1:5277839-5277858 | Msa0189820:intron | 40.0% | |
| GTGCTTATGCAGTAGTCAAT+AGG | + | chr2_1:5277861-5277880 | Msa0189820:intron | 40.0% | |
| ! | TCTTTGCTTATTAATGGGCC+AGG | + | chr2_1:5278019-5278038 | Msa0189820:intron | 40.0% |
| ! | TTATTAATGGGCCAGGAATG+AGG | + | chr2_1:5278026-5278045 | Msa0189820:intron | 40.0% |
| AAAGGAAAACTCCTCATTCC+TGG | - | chr2_1:5278040-5278059 | None:intergenic | 40.0% | |
| CTAAAATGGGTCTTCACTCA+AGG | + | chr2_1:5278213-5278232 | Msa0189820:intron | 40.0% | |
| ! | TCGTATCTGCAGTCTCTTTT+TGG | + | chr2_1:5278511-5278530 | Msa0189820:CDS | 40.0% |
| ! | ACCAGACACATTTGAGTTAG+TGG | - | chr2_1:5278674-5278693 | None:intergenic | 40.0% |
| CGTCTCTAATGAACGATTCA+AGG | + | chr2_1:5278699-5278718 | Msa0189820:CDS | 40.0% | |
| ATTCAAGGAAATTGCCTTGC+TGG | + | chr2_1:5278714-5278733 | Msa0189820:CDS | 40.0% | |
| TTCATCAGAAGACAACAAGG+CGG | + | chr2_1:5278842-5278861 | Msa0189820:CDS | 40.0% | |
| GTCGCTACAATAGTCATGTT+GGG | + | chr2_1:5278956-5278975 | Msa0189820:CDS | 40.0% | |
| GTCATGTTGGGATTCATGTT+AGG | + | chr2_1:5278968-5278987 | Msa0189820:CDS | 40.0% | |
| GTTAGCGATCTAAATCAGCA+AGG | + | chr2_1:5279273-5279292 | Msa0189820:CDS | 40.0% | |
| TCCTCTATTGTTCCATCCAT+CGG | - | chr2_1:5279312-5279331 | None:intergenic | 40.0% | |
| CCATCTTTGCATCAACAACT+CGG | - | chr2_1:5279350-5279369 | None:intergenic | 40.0% | |
| !! | CCTTTACCTTCAGAAGTATC+AGG | - | chr2_1:5279429-5279448 | None:intergenic | 40.0% |
| ! | CCTGATACTTCTGAAGGTAA+AGG | + | chr2_1:5279426-5279445 | Msa0189820:CDS | 40.0% |
| ! | TTCTGAAGGTAAAGGTGATG+TGG | + | chr2_1:5279434-5279453 | Msa0189820:CDS | 40.0% |
| TTGAGGGGTTTGATCATTCT+GGG | + | chr2_1:5279466-5279485 | Msa0189820:CDS | 40.0% | |
| TTCCCAGATGAATGAAGCAA+GGG | - | chr2_1:5279519-5279538 | None:intergenic | 40.0% | |
| ATTCCCAGATGAATGAAGCA+AGG | - | chr2_1:5279520-5279539 | None:intergenic | 40.0% | |
| ! | TTTTCACTCTTCTTGGATCC+AGG | - | chr2_1:5279552-5279571 | None:intergenic | 40.0% |
| CTGGTTGCACTAATACTAAG+GGG | + | chr2_1:5279574-5279593 | Msa0189820:CDS | 40.0% | |
| TGGTTGCACTAATACTAAGG+GGG | + | chr2_1:5279575-5279594 | Msa0189820:CDS | 40.0% | |
| AGGGGTTAGAAACCTTAGAT+TGG | - | chr2_1:5279728-5279747 | None:intergenic | 40.0% | |
| ! | ATCTAAGGTTTCTAACCCCT+CGG | + | chr2_1:5279728-5279747 | Msa0189820:CDS | 40.0% |
| TTATCCTTGCCATTATTGGC+AGG | + | chr2_1:5279815-5279834 | Msa0189820:intron | 40.0% | |
| TATCCTTGCCATTATTGGCA+GGG | + | chr2_1:5279816-5279835 | Msa0189820:intron | 40.0% | |
| GTTCCTACAAGTATCATAGC+AGG | + | chr2_1:5279868-5279887 | Msa0189820:intron | 40.0% | |
| GACCACAAGACATGCATAAA+GGG | - | chr2_1:5279922-5279941 | None:intergenic | 40.0% | |
| AGACCACAAGACATGCATAA+AGG | - | chr2_1:5279923-5279942 | None:intergenic | 40.0% | |
| !!! | TTTGGGCATGCTTGTTTTTG+GGG | + | chr2_1:5280070-5280089 | Msa0189820:intron | 40.0% |
| CGAGATTAAGAATGCTTGCA+TGG | + | chr2_1:5280132-5280151 | Msa0189820:intron | 40.0% | |
| CAATCAGTTAAGTGCAGAGT+GGG | - | chr2_1:5280402-5280421 | None:intergenic | 40.0% | |
| CAAATGACATAGTGGTGCAA+GGG | + | chr2_1:5280563-5280582 | Msa0189820:CDS | 40.0% | |
| TATTCCACACCATACACATG+TGG | - | chr2_1:5280662-5280681 | None:intergenic | 40.0% | |
| AACTGGACACATGAATCCAA+CGG | - | chr2_1:5280728-5280747 | None:intergenic | 40.0% | |
| ATTCATGTGTCCAGTTTGCA+AGG | + | chr2_1:5280732-5280751 | Msa0189820:CDS | 40.0% | |
| ! | GAGATTTTTGCCTTGCAAAC+TGG | - | chr2_1:5280745-5280764 | None:intergenic | 40.0% |
| GTTTGCAAGGCAAAAATCTC+TGG | + | chr2_1:5280745-5280764 | Msa0189820:CDS | 40.0% | |
| CTCTGGTCAAATCAATGTGT+TGG | + | chr2_1:5280762-5280781 | Msa0189820:CDS | 40.0% | |
| CAAATCAATGTGTTGGACAG+TGG | + | chr2_1:5280769-5280788 | Msa0189820:CDS | 40.0% | |
| CGATGCACTCAGTTTATCAA+AGG | - | chr2_1:5281003-5281022 | None:intergenic | 40.0% | |
| TTGATAAACTGAGTGCATCG+TGG | + | chr2_1:5281003-5281022 | Msa0189820:intron | 40.0% | |
| ACTCTATCAACTCCAAAAGC+TGG | - | chr2_1:5281289-5281308 | None:intergenic | 40.0% | |
| GTGTATGGAGTTCCATTGAA+CGG | - | chr2_1:5281490-5281509 | None:intergenic | 40.0% | |
| ! | GCGTGTAGATTTAAGGTCGA+AGG | - | chr2_1:5276934-5276953 | None:intergenic | 45.0% |
| ! | AGCTCAACAGTGTCGAACTT+CGG | - | chr2_1:5277134-5277153 | None:intergenic | 45.0% |
| AGTTCGACACTGTTGAGCTT+CGG | + | chr2_1:5277135-5277154 | Msa0189820:CDS | 45.0% | |
| GCTTCGGAATCCTTCAATTC+CGG | + | chr2_1:5277151-5277170 | Msa0189820:CDS | 45.0% | |
| GGAGGTGAAGGAATTTCCAT+TGG | + | chr2_1:5277172-5277191 | Msa0189820:CDS | 45.0% | |
| GAATTTCCATTGGCATTGCC+TGG | + | chr2_1:5277182-5277201 | Msa0189820:CDS | 45.0% | |
| AAGTGAGGAAGAGGAAGAGA+GGG | + | chr2_1:5277210-5277229 | Msa0189820:CDS | 45.0% | |
| !! | CGGTGTTGTCATTGATTTGG+CGG | + | chr2_1:5277283-5277302 | Msa0189820:CDS | 45.0% |
| !! | CATTGATTTGGCGGCGTTAT+CGG | + | chr2_1:5277292-5277311 | Msa0189820:CDS | 45.0% |
| AAGGAGGAAGAGGAGTTGTT+AGG | + | chr2_1:5277365-5277384 | Msa0189820:CDS | 45.0% | |
| AGGAGGAAGAGGAGTTGTTA+GGG | + | chr2_1:5277366-5277385 | Msa0189820:CDS | 45.0% | |
| AGAAGAAGCTTCCATCCCAA+AGG | - | chr2_1:5277476-5277495 | None:intergenic | 45.0% | |
| AAAGGAAAGATGGTCGTGCT+TGG | + | chr2_1:5277504-5277523 | Msa0189820:CDS | 45.0% | |
| CTAACATGGGCTCACATCAA+AGG | - | chr2_1:5278058-5278077 | None:intergenic | 45.0% | |
| CTTTGATGTGAGCCCATGTT+AGG | + | chr2_1:5278056-5278075 | Msa0189820:intron | 45.0% | |
| TTGGGCACAAGAAATTTGCG+AGG | + | chr2_1:5278188-5278207 | Msa0189820:intron | 45.0% | |
| TGGGCACAAGAAATTTGCGA+GGG | + | chr2_1:5278189-5278208 | Msa0189820:intron | 45.0% | |
| AAACTGCTGTCCATTAGGAC+TGG | - | chr2_1:5278470-5278489 | None:intergenic | 45.0% | |
| GACAGAAACTGCTGTCCATT+AGG | - | chr2_1:5278475-5278494 | None:intergenic | 45.0% | |
| TCAGTAGTCACTCTCTGTTC+CGG | - | chr2_1:5278586-5278605 | None:intergenic | 45.0% | |
| TAGTGGCAACAATCTGTCGT+TGG | - | chr2_1:5278657-5278676 | None:intergenic | 45.0% | |
| GCCACTAACTCAAATGTGTC+TGG | + | chr2_1:5278670-5278689 | Msa0189820:CDS | 45.0% | |
| GGAAATTGCCTTGCTGGAAA+TGG | + | chr2_1:5278720-5278739 | Msa0189820:CDS | 45.0% | |
| AAGGTTCTCCATTTCCAGCA+AGG | - | chr2_1:5278731-5278750 | None:intergenic | 45.0% | |
| CGTGTATTTGCACATCTGCA+AGG | - | chr2_1:5278750-5278769 | None:intergenic | 45.0% | |
| CAGCTTGACCTTTGATGAGA+AGG | + | chr2_1:5278792-5278811 | Msa0189820:CDS | 45.0% | |
| CTTGGTTCATCCGTTTCAGA+TGG | + | chr2_1:5278871-5278890 | Msa0189820:CDS | 45.0% | |
| CGTCGCTACAATAGTCATGT+TGG | + | chr2_1:5278955-5278974 | Msa0189820:CDS | 45.0% | |
| ACCTTCAAGGATCACGAAGA+TGG | + | chr2_1:5279071-5279090 | Msa0189820:CDS | 45.0% | |
| TCCATCTTCGTGATCCTTGA+AGG | - | chr2_1:5279075-5279094 | None:intergenic | 45.0% | |
| !! | CCAACCGCAATTTCTGAAAC+AGG | - | chr2_1:5279174-5279193 | None:intergenic | 45.0% |
| CCTGTTTCAGAAATTGCGGT+TGG | + | chr2_1:5279171-5279190 | Msa0189820:CDS | 45.0% | |
| ATAAATGCCGAGTCTCCAGT+CGG | + | chr2_1:5279210-5279229 | Msa0189820:CDS | 45.0% | |
| TCCAGTCGGTGAACAGAAAA+TGG | + | chr2_1:5279224-5279243 | Msa0189820:CDS | 45.0% | |
| ! | TCCATTTTCTGTTCACCGAC+TGG | - | chr2_1:5279228-5279247 | None:intergenic | 45.0% |
| ACCGATGGATGGAACAATAG+AGG | + | chr2_1:5279308-5279327 | Msa0189820:CDS | 45.0% | |
| CCGAGTTGTTGATGCAAAGA+TGG | + | chr2_1:5279347-5279366 | Msa0189820:CDS | 45.0% | |
| GATGCACCTGATACTTCTGA+AGG | + | chr2_1:5279420-5279439 | Msa0189820:CDS | 45.0% | |
| GTTGAGGGGTTTGATCATTC+TGG | + | chr2_1:5279465-5279484 | Msa0189820:CDS | 45.0% | |
| AGTCCCTTGCTTCATTCATC+TGG | + | chr2_1:5279513-5279532 | Msa0189820:CDS | 45.0% | |
| GTCCCTTGCTTCATTCATCT+GGG | + | chr2_1:5279514-5279533 | Msa0189820:CDS | 45.0% | |
| TCTGGGAATCACATGAAACC+TGG | + | chr2_1:5279531-5279550 | Msa0189820:CDS | 45.0% | |
| GATAGCTGCTATGATGTACC+TGG | + | chr2_1:5279651-5279670 | Msa0189820:CDS | 45.0% | |
| GGTATCCCCAGAACAATCTT+TGG | + | chr2_1:5279749-5279768 | Msa0189820:CDS | 45.0% | |
| AAACCCTGCCAATAATGGCA+AGG | - | chr2_1:5279822-5279841 | None:intergenic | 45.0% | |
| GACCCTGCTATGATACTTGT+AGG | - | chr2_1:5279874-5279893 | None:intergenic | 45.0% | |
| AGCAGGGTCTTCTTAAAACG+TGG | + | chr2_1:5279885-5279904 | Msa0189820:intron | 45.0% | |
| AGCCCTTTATGCATGTCTTG+TGG | + | chr2_1:5279917-5279936 | Msa0189820:intron | 45.0% | |
| AGGTGTCTTGGAGATTTAGG+TGG | + | chr2_1:5280202-5280221 | Msa0189820:intron | 45.0% | |
| ! | GTTGAAAGTACACAAGCACG+TGG | - | chr2_1:5280248-5280267 | None:intergenic | 45.0% |
| CCAATCAGTTAAGTGCAGAG+TGG | - | chr2_1:5280403-5280422 | None:intergenic | 45.0% | |
| CCACTCTGCACTTAACTGAT+TGG | + | chr2_1:5280400-5280419 | Msa0189820:intron | 45.0% | |
| GCAAATGACATAGTGGTGCA+AGG | + | chr2_1:5280562-5280581 | Msa0189820:CDS | 45.0% | |
| AGCTCACAACCACATGTGTA+TGG | + | chr2_1:5280650-5280669 | Msa0189820:CDS | 45.0% | |
| ACAACCACATGTGTATGGTG+TGG | + | chr2_1:5280655-5280674 | Msa0189820:CDS | 45.0% | |
| GTCTAAAGATGGCCAGCATT+TGG | - | chr2_1:5280799-5280818 | None:intergenic | 45.0% | |
| AATGCTGGCCATCTTTAGAC+TGG | + | chr2_1:5280799-5280818 | Msa0189820:exon | 45.0% | |
| ATACGCACCAGTGTCTGAAT+TGG | + | chr2_1:5280974-5280993 | Msa0189820:intron | 45.0% | |
| CGTGGTGTGGGTCATATTAT+TGG | + | chr2_1:5281021-5281040 | Msa0189820:intron | 45.0% | |
| !!! | AAAAAATTATTACTTTATTT+GGG | + | chr2_1:5280053-5280072 | Msa0189820:intron | 5.0% |
| AGAGTGGGAGTTGGAAGAAG+CGG | - | chr2_1:5277056-5277075 | None:intergenic | 50.0% | |
| ! | ATCGATGATGATGCGGTGGT+CGG | - | chr2_1:5277084-5277103 | None:intergenic | 50.0% |
| ! | GGTAATCGATGATGATGCGG+TGG | - | chr2_1:5277088-5277107 | None:intergenic | 50.0% |
| TCGGAATCCTTCAATTCCGG+AGG | + | chr2_1:5277154-5277173 | Msa0189820:CDS | 50.0% | |
| TCCTTCAATTCCGGAGGTGA+AGG | + | chr2_1:5277160-5277179 | Msa0189820:CDS | 50.0% | |
| TCCTTCACCTCCGGAATTGA+AGG | - | chr2_1:5277164-5277183 | None:intergenic | 50.0% | |
| TTTCCATTGGCATTGCCTGG+TGG | + | chr2_1:5277185-5277204 | Msa0189820:CDS | 50.0% | |
| GAAGTGAGGAAGAGGAAGAG+AGG | + | chr2_1:5277209-5277228 | Msa0189820:CDS | 50.0% | |
| !! | TGAGTGATTTGGTTGGGCAG+TGG | + | chr2_1:5277393-5277412 | Msa0189820:CDS | 50.0% |
| !! | GAGTGATTTGGTTGGGCAGT+GGG | + | chr2_1:5277394-5277413 | Msa0189820:CDS | 50.0% |
| !! | AGTGATTTGGTTGGGCAGTG+GGG | + | chr2_1:5277395-5277414 | Msa0189820:CDS | 50.0% |
| ! | GTGATGTGTTGCCTTTGGGA+TGG | + | chr2_1:5277462-5277481 | Msa0189820:CDS | 50.0% |
| !! | ACAACAAGGCGGTATCGACT+TGG | + | chr2_1:5278853-5278872 | Msa0189820:CDS | 50.0% |
| GAGGAGAGCTGAAGATTTGC+CGG | + | chr2_1:5278999-5279018 | Msa0189820:CDS | 50.0% | |
| AGGAGAGCTGAAGATTTGCC+GGG | + | chr2_1:5279000-5279019 | Msa0189820:CDS | 50.0% | |
| TCTTCTGCTCCCAGGACATT+AGG | - | chr2_1:5279030-5279049 | None:intergenic | 50.0% | |
| AGCAGAAGAGTCTCCAGTCA+CGG | + | chr2_1:5279041-5279060 | Msa0189820:CDS | 50.0% | |
| TCACGGATGAGACACCTTCA+AGG | + | chr2_1:5279058-5279077 | Msa0189820:CDS | 50.0% | |
| AGGTAGTCCTCGTTTACCGA+TGG | + | chr2_1:5279293-5279312 | Msa0189820:CDS | 50.0% | |
| AGTCCTCGTTTACCGATGGA+TGG | + | chr2_1:5279297-5279316 | Msa0189820:CDS | 50.0% | |
| GTTCCATCCATCGGTAAACG+AGG | - | chr2_1:5279303-5279322 | None:intergenic | 50.0% | |
| ! | CATTCTGGGAGTGAACTGCA+AGG | + | chr2_1:5279480-5279499 | Msa0189820:CDS | 50.0% |
| !! | ATTGTTCTGGGGATACCGAG+GGG | - | chr2_1:5279746-5279765 | None:intergenic | 50.0% |
| !! | GATTGTTCTGGGGATACCGA+GGG | - | chr2_1:5279747-5279766 | None:intergenic | 50.0% |
| !! | AGATTGTTCTGGGGATACCG+AGG | - | chr2_1:5279748-5279767 | None:intergenic | 50.0% |
| TTCTGCATTCAGCTCCGACA+AGG | + | chr2_1:5279779-5279798 | Msa0189820:CDS | 50.0% | |
| !! | AGAGGGAGCACTTCAATCCA+TGG | - | chr2_1:5280002-5280021 | None:intergenic | 50.0% |
| TTTAGGTGGCGCTAGTTGCT+AGG | + | chr2_1:5280216-5280235 | Msa0189820:intron | 50.0% | |
| TGGCGCTAGTTGCTAGGTTA+TGG | + | chr2_1:5280222-5280241 | Msa0189820:intron | 50.0% | |
| CAGTTAAGTGCAGAGTGGGT+GGG | - | chr2_1:5280398-5280417 | None:intergenic | 50.0% | |
| TCAGTTAAGTGCAGAGTGGG+TGG | - | chr2_1:5280399-5280418 | None:intergenic | 50.0% | |
| TTGTGATGCAGACTGAGCTG+AGG | - | chr2_1:5280599-5280618 | None:intergenic | 50.0% | |
| GACAGTGGATCACCAAATGC+TGG | + | chr2_1:5280784-5280803 | Msa0189820:CDS | 50.0% | |
| AAGGTCGCCAATTCAGACAC+TGG | - | chr2_1:5280984-5281003 | None:intergenic | 50.0% | |
| AAACTGAGTGCATCGTGGTG+TGG | + | chr2_1:5281008-5281027 | Msa0189820:intron | 50.0% | |
| AACTGAGTGCATCGTGGTGT+GGG | + | chr2_1:5281009-5281028 | Msa0189820:intron | 50.0% | |
| ! | TAGTCTTGGAGGCCGTTCAA+TGG | + | chr2_1:5281475-5281494 | Msa0189820:three_prime_UTR | 50.0% |
| GCGCTGTGGTTGAAGGTTGA+TGG | - | chr2_1:5276981-5277000 | None:intergenic | 55.0% | |
| TCAACCTTCAACCACAGCGC+TGG | + | chr2_1:5276981-5277000 | Msa0189820:CDS | 55.0% | |
| CAACCTTCAACCACAGCGCT+GGG | + | chr2_1:5276982-5277001 | Msa0189820:CDS | 55.0% | |
| ! | ATGATGATGCGGTGGTCGGA+GGG | - | chr2_1:5277080-5277099 | None:intergenic | 55.0% |
| TCACCACCAGGCAATGCCAA+TGG | - | chr2_1:5277191-5277210 | None:intergenic | 55.0% | |
| ! | CATTGCCTGGTGGTGAAGTG+AGG | + | chr2_1:5277195-5277214 | Msa0189820:CDS | 55.0% |
| CTCTTCCTCACTTCACCACC+AGG | - | chr2_1:5277203-5277222 | None:intergenic | 55.0% | |
| ! | CTGGTGGTGAAGTGAGGAAG+AGG | + | chr2_1:5277201-5277220 | Msa0189820:CDS | 55.0% |
| TGAGGAAGAGGAAGAGAGGG+AGG | + | chr2_1:5277213-5277232 | Msa0189820:CDS | 55.0% | |
| ! | TGATTTGGCGGCGTTATCGG+AGG | + | chr2_1:5277295-5277314 | Msa0189820:CDS | 55.0% |
| GAGATAGCGAGAAGGACGGA+GGG | + | chr2_1:5277338-5277357 | Msa0189820:CDS | 55.0% | |
| AGATAGCGAGAAGGACGGAG+GGG | + | chr2_1:5277339-5277358 | Msa0189820:CDS | 55.0% | |
| GAGAAGGACGGAGGGGTTAA+AGG | + | chr2_1:5277346-5277365 | Msa0189820:CDS | 55.0% | |
| AAGGACGGAGGGGTTAAAGG+AGG | + | chr2_1:5277349-5277368 | Msa0189820:CDS | 55.0% | |
| GGAGGGGTTAAAGGAGGAAG+AGG | + | chr2_1:5277355-5277374 | Msa0189820:CDS | 55.0% | |
| GAAGTAGGAGGAGGAAGAGG+AGG | + | chr2_1:5277417-5277436 | Msa0189820:CDS | 55.0% | |
| !! | GAAGGTGTCTCATCCGTGAC+TGG | - | chr2_1:5279057-5279076 | None:intergenic | 55.0% |
| ! | CTGTTCACCGACTGGAGACT+CGG | - | chr2_1:5279220-5279239 | None:intergenic | 55.0% |
| !! | TGATGTGGCGCTGACTGTTG+AGG | + | chr2_1:5279449-5279468 | Msa0189820:CDS | 55.0% |
| !! | GATGTGGCGCTGACTGTTGA+GGG | + | chr2_1:5279450-5279469 | Msa0189820:CDS | 55.0% |
| !! | ATGTGGCGCTGACTGTTGAG+GGG | + | chr2_1:5279451-5279470 | Msa0189820:CDS | 55.0% |
| TCCTCATTGACAGGGGTTCC+AGG | + | chr2_1:5280459-5280478 | Msa0189820:intron | 55.0% | |
| TCCTGGAACCCCTGTCAATG+AGG | - | chr2_1:5280463-5280482 | None:intergenic | 55.0% | |
| GACAGGGGTTCCAGGAATTG+AGG | + | chr2_1:5280467-5280486 | Msa0189820:intron | 55.0% | |
| GTGGGAGTTGGAAGAAGCGG+TGG | - | chr2_1:5277053-5277072 | None:intergenic | 60.0% | |
| ! | TGATGATGCGGTGGTCGGAG+GGG | - | chr2_1:5277079-5277098 | None:intergenic | 60.0% |
| ! | GATGATGATGCGGTGGTCGG+AGG | - | chr2_1:5277081-5277100 | None:intergenic | 60.0% |
| TTTGGCGGCGTTATCGGAGG+TGG | + | chr2_1:5277298-5277317 | Msa0189820:CDS | 60.0% | |
| ! | GGAGGTGGAGCATCCGTTTG+CGG | + | chr2_1:5277313-5277332 | Msa0189820:CDS | 60.0% |
| CTCGCTATCTCCGCCGCAAA+CGG | - | chr2_1:5277329-5277348 | None:intergenic | 60.0% | |
| TTGCGGCGGAGATAGCGAGA+AGG | + | chr2_1:5277330-5277349 | Msa0189820:CDS | 60.0% | |
| GGCGGAGATAGCGAGAAGGA+CGG | + | chr2_1:5277334-5277353 | Msa0189820:CDS | 60.0% | |
| GGAGATAGCGAGAAGGACGG+AGG | + | chr2_1:5277337-5277356 | Msa0189820:CDS | 60.0% | |
| TGGTTGGGCAGTGGGGAAGT+AGG | + | chr2_1:5277402-5277421 | Msa0189820:CDS | 60.0% | |
| TTGGGCAGTGGGGAAGTAGG+AGG | + | chr2_1:5277405-5277424 | Msa0189820:CDS | 60.0% | |
| GGGGAAGTAGGAGGAGGAAG+AGG | + | chr2_1:5277414-5277433 | Msa0189820:CDS | 60.0% | |
| GGCAACAGAAGCAGCAGCAG+GGG | - | chr2_1:5278620-5278639 | None:intergenic | 60.0% | |
| GGGCAACAGAAGCAGCAGCA+GGG | - | chr2_1:5278621-5278640 | None:intergenic | 60.0% | |
| CCCAGGACATTAGGCTGACC+CGG | - | chr2_1:5279021-5279040 | None:intergenic | 60.0% | |
| CCGGGTCAGCCTAATGTCCT+GGG | + | chr2_1:5279018-5279037 | Msa0189820:CDS | 60.0% | |
| CTGGAGACTCTTCTGCTCCC+AGG | - | chr2_1:5279038-5279057 | None:intergenic | 60.0% | |
| GGACCCAGCGCTGTGGTTGA+AGG | - | chr2_1:5276988-5277007 | None:intergenic | 65.0% | |
| AGGACGGGAGTAGGTGCGGT+GGG | - | chr2_1:5277009-5277028 | None:intergenic | 65.0% | |
| GGTGAGGACGGGAGTAGGTG+CGG | - | chr2_1:5277013-5277032 | None:intergenic | 65.0% | |
| TCGACGGTGAGGACGGGAGT+AGG | - | chr2_1:5277018-5277037 | None:intergenic | 65.0% | |
| GCGACATCGACGGTGAGGAC+GGG | - | chr2_1:5277024-5277043 | None:intergenic | 65.0% | |
| CGCGACATCGACGGTGAGGA+CGG | - | chr2_1:5277025-5277044 | None:intergenic | 65.0% | |
| GTGGTGCGACGCGACATCGA+CGG | - | chr2_1:5277034-5277053 | None:intergenic | 65.0% | |
| TCGGAGGGGAGAGTGGGAGT+TGG | - | chr2_1:5277065-5277084 | None:intergenic | 65.0% | |
| ! | GGTGGAGCATCCGTTTGCGG+CGG | + | chr2_1:5277316-5277335 | Msa0189820:CDS | 65.0% |
| GGCAGTGGGGAAGTAGGAGG+AGG | + | chr2_1:5277408-5277427 | Msa0189820:CDS | 65.0% | |
| CGGGCAACAGAAGCAGCAGC+AGG | - | chr2_1:5278622-5278641 | None:intergenic | 65.0% | |
| ! | TGCTGCTTCTGTTGCCCGCG+AGG | + | chr2_1:5278624-5278643 | Msa0189820:CDS | 65.0% |
| TTCTGTTGCCCGCGAGGAGC+AGG | + | chr2_1:5278630-5278649 | Msa0189820:CDS | 65.0% | |
| TCGTTGGTCCTGCTCCTCGC+GGG | - | chr2_1:5278641-5278660 | None:intergenic | 65.0% | |
| GTCGTTGGTCCTGCTCCTCG+CGG | - | chr2_1:5278642-5278661 | None:intergenic | 65.0% | |
| GCCGGGTCAGCCTAATGTCC+TGG | + | chr2_1:5279017-5279036 | Msa0189820:CDS | 65.0% | |
| GAGGACGGGAGTAGGTGCGG+TGG | - | chr2_1:5277010-5277029 | None:intergenic | 70.0% | |
| GCGACGCGACATCGACGGTG+AGG | - | chr2_1:5277029-5277048 | None:intergenic | 70.0% | |
| CGGTGGTCGGAGGGGAGAGT+GGG | - | chr2_1:5277071-5277090 | None:intergenic | 70.0% | |
| TGCGGTGGGACCCAGCGCTG+TGG | - | chr2_1:5276995-5277014 | None:intergenic | 75.0% | |
| GCGGTGGTCGGAGGGGAGAG+TGG | - | chr2_1:5277072-5277091 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 5276407 | 5281630 | 5276407 | ID=Msa0189820;Name=Msa0189820 |
| chr2_1 | mRNA | 5276407 | 5281630 | 5276407 | ID=Msa0189820-mRNA-1;Parent=Msa0189820;Name=Msa0189820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=224|1|1|1|0.5|0.2|5|401|800 |
| chr2_1 | exon | 5276407 | 5276439 | 5276407 | ID=Msa0189820-mRNA-1:exon:2358;Parent=Msa0189820-mRNA-1 |
| chr2_1 | exon | 5276631 | 5277549 | 5276631 | ID=Msa0189820-mRNA-1:exon:2359;Parent=Msa0189820-mRNA-1 |
| chr2_1 | exon | 5278471 | 5279800 | 5278471 | ID=Msa0189820-mRNA-1:exon:2360;Parent=Msa0189820-mRNA-1 |
| chr2_1 | exon | 5280472 | 5280820 | 5280472 | ID=Msa0189820-mRNA-1:exon:2361;Parent=Msa0189820-mRNA-1 |
| chr2_1 | exon | 5281234 | 5281630 | 5281234 | ID=Msa0189820-mRNA-1:exon:2362;Parent=Msa0189820-mRNA-1 |
| chr2_1 | five_prime_UTR | 5276407 | 5276439 | 5276407 | ID=Msa0189820-mRNA-1:five_prime_utr;Parent=Msa0189820-mRNA-1 |
| chr2_1 | five_prime_UTR | 5276631 | 5276821 | 5276631 | ID=Msa0189820-mRNA-1:five_prime_utr;Parent=Msa0189820-mRNA-1 |
| chr2_1 | CDS | 5276822 | 5277549 | 5276822 | ID=Msa0189820-mRNA-1:cds;Parent=Msa0189820-mRNA-1 |
| chr2_1 | CDS | 5278471 | 5279800 | 5278471 | ID=Msa0189820-mRNA-1:cds;Parent=Msa0189820-mRNA-1 |
| chr2_1 | CDS | 5280472 | 5280816 | 5280472 | ID=Msa0189820-mRNA-1:cds;Parent=Msa0189820-mRNA-1 |
| chr2_1 | three_prime_UTR | 5280817 | 5280820 | 5280817 | ID=Msa0189820-mRNA-1:three_prime_utr;Parent=Msa0189820-mRNA-1 |
| chr2_1 | three_prime_UTR | 5281234 | 5281630 | 5281234 | ID=Msa0189820-mRNA-1:three_prime_utr;Parent=Msa0189820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
