AlfalfaGEDB | Msa0191060

M. sativa cultivar zhongmu-4 / Msa0191060

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191060	KEH36484.1	91.473	129	4	2	1	129	1	122	3.05e-76	231

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191060	sp\|Q9LRM4\|MIP1B_ARATH	37.778	90	48	2	4	89	30	115	9.30e-11	58.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191060	A0A072V3A1	91.473	129	4	2	1	129	1	122	1.46e-76	231

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0191060	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191060	MtrunA17_Chr2g0280901	91.473	129	4	2	1	129	1	122	2.80e-80	231
Msa0191060	MtrunA17_Chr2g0323271	43.382	136	56	1	1	115	1	136	1.79e-33	116
Msa0191060	MtrunA17_Chr2g0322971	50.000	58	29	0	3	60	29	86	1.46e-13	62.8
Msa0191060	MtrunA17_Chr4g0024021	45.763	59	32	0	5	63	36	94	1.25e-11	57.8
Msa0191060	MtrunA17_Chr4g0002211	46.552	58	31	0	3	60	6	63	4.98e-11	58.2
Msa0191060	MtrunA17_Chr1g0150471	48.276	58	28	2	3	59	4	60	9.83e-11	57.8

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191060	AT5G54470.1	52.632	95	45	0	2	96	3	97	7.33e-33	115
Msa0191060	AT4G27310.1	47.706	109	54	1	1	106	1	109	1.26e-32	114
Msa0191060	AT3G21890.1	37.778	90	48	2	4	89	30	115	9.46e-12	58.2
Msa0191060	AT3G21150.1	45.902	61	33	0	1	61	1	61	3.36e-11	58.5
Msa0191060	AT4G15248.1	41.176	68	37	1	5	69	32	99	4.48e-11	56.6

Showing 1 to 5 of 5 entries

Previous1Next

Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATCAAGTGGTTCCA+TGG	0.473604	2_1:+6581762	Msa0191060:CDS
ACAGTGATTGCAAAGGGAGA+TGG	0.619548	2_1:-6581645	None:intergenic
AGATCAAGCAAGCCTTTGTT+GGG	0.466195	2_1:+6581502	Msa0191060:CDS
AGTGACACAGTGATTGCAAA+GGG	0.569368	2_1:-6581651	None:intergenic
ATCATTGTTGTTGTTATTGT+TGG	0.313257	2_1:-6581678	None:intergenic
CAATCTCTAACACCTTGGCA+TGG	0.658549	2_1:+6581599	Msa0191060:CDS
CAGATCAAGCAAGCCTTTGT+TGG	0.420231	2_1:+6581501	Msa0191060:CDS
CAGTGACACAGTGATTGCAA+AGG	0.628505	2_1:-6581652	None:intergenic
CTAACACCTTGGCATGGCAC+TGG	0.516554	2_1:+6581605	Msa0191060:CDS
GAACAAGAAGAAACTGGTGG+TGG	0.609570	2_1:-6581797	None:intergenic

Showing 1 to 10 of 24 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGTTAGAGATTGACAAATA+TGG	-	chr2_1:6581592-6581611	None:intergenic	30.0%
TTTGAAGAACAAGAAGAAAC+TGG	-	chr2_1:6581806-6581825	None:intergenic	30.0%
GATTCACAAAACAACTTTGC+TGG	-	chr2_1:6581482-6581501	None:intergenic	35.0%
TTTGTCAATCTCTAACACCT+TGG	+	chr2_1:6581594-6581613	Msa0191060:CDS	35.0%
AAGAAAATCAAGTGGTTCCA+TGG	+	chr2_1:6581762-6581781	Msa0191060:CDS	35.0%
AGATCAAGCAAGCCTTTGTT+GGG	+	chr2_1:6581502-6581521	Msa0191060:CDS	40.0%
TAGCATCACATTCCCAACAA+AGG	-	chr2_1:6581517-6581536	None:intergenic	40.0%
TTGTTGGGAATGTGATGCTA+AGG	+	chr2_1:6581517-6581536	Msa0191060:CDS	40.0%
AGTGACACAGTGATTGCAAA+GGG	-	chr2_1:6581654-6581673	None:intergenic	40.0%
GAAGAACAAGAAGAAACTGG+TGG	-	chr2_1:6581803-6581822	None:intergenic	40.0%

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	6581449	6581838	6581449	ID=Msa0191060;Name=Msa0191060
chr2_1	mRNA	6581449	6581838	6581449	ID=Msa0191060-mRNA-1;Parent=Msa0191060;Name=Msa0191060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|129
chr2_1	exon	6581449	6581838	6581449	ID=Msa0191060-mRNA-1:exon:2936;Parent=Msa0191060-mRNA-1
chr2_1	CDS	6581449	6581838	6581449	ID=Msa0191060-mRNA-1:cds;Parent=Msa0191060-mRNA-1

Gene Sequence

>Msa0191060

ATGAAGAAGAAATGTGAGCTATGCAAAAGTCCAGCAAAGTTGTTTTGTGAATCAGATCAAGCAAGCCTTTGTTGGGAATGTGATGCTAAGGTTCACACTGCAAACTTCATAGTCACAAAGCATCACAGATTTCTTCTCTGCCATATTTGTCAATCTCTAACACCTTGGCATGGCACTGGACCCAAGTTTGTACCCACCATCTCCCTTTGCAATCACTGTGTCACTGCTACCAACAATAACAACAACAATGATGAAGATAATGATCAAGATGATGATGATGATGATGATGATGATGCTGAGGATGATGATGATGAAGAAAATCAAGTGGTTCCATGGAAATCTACAACTCCACCACCAGTTTCTTCTTGTTCTTCAAATAGTGCAAACTAA

Protein sequence

>Msa0191060

MKKKCELCKSPAKLFCESDQASLCWECDAKVHTANFIVTKHHRFLLCHICQSLTPWHGTGPKFVPTISLCNHCVTATNNNNNNDEDNDQDDDDDDDDDAEDDDDEENQVVPWKSTTPPPVSSCSSNSAN*