Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192930 | MCH82909.1 | 69.583 | 240 | 72 | 1 | 18 | 257 | 4 | 242 | 8.52e-120 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192930 | sp|Q6NQJ7|FRS4_ARATH | 34.112 | 214 | 115 | 6 | 48 | 250 | 3 | 201 | 1.62e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192930 | A0A392M6P6 | 69.583 | 240 | 72 | 1 | 18 | 257 | 4 | 242 | 4.07e-120 | 357 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0192930 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192930 | MtrunA17_Chr2g0296781 | 75.238 | 210 | 52 | 0 | 48 | 257 | 3 | 212 | 1.13e-113 | 342 |
| Msa0192930 | MtrunA17_Chr1g0196541 | 57.143 | 210 | 90 | 0 | 48 | 257 | 3 | 212 | 2.40e-81 | 258 |
| Msa0192930 | MtrunA17_Chr6g0477261 | 88.119 | 101 | 12 | 0 | 157 | 257 | 1 | 101 | 1.86e-57 | 194 |
| Msa0192930 | MtrunA17_Chr5g0441581 | 38.983 | 236 | 128 | 5 | 28 | 257 | 15 | 240 | 1.05e-42 | 154 |
| Msa0192930 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 5.63e-34 | 118 |
| Msa0192930 | MtrunA17_Chr2g0329031 | 33.175 | 211 | 120 | 5 | 48 | 250 | 20 | 217 | 1.68e-29 | 116 |
| Msa0192930 | MtrunA17_Chr2g0291591 | 30.204 | 245 | 162 | 5 | 18 | 257 | 39 | 279 | 1.58e-28 | 113 |
| Msa0192930 | MtrunA17_Chr6g0451441 | 32.500 | 200 | 125 | 5 | 10 | 203 | 52 | 247 | 4.76e-24 | 100 |
| Msa0192930 | MtrunA17_Chr7g0258861 | 28.194 | 227 | 152 | 4 | 39 | 257 | 7 | 230 | 6.05e-24 | 98.2 |
| Msa0192930 | MtrunA17_Chr1g0207551 | 29.018 | 224 | 137 | 6 | 39 | 250 | 31 | 244 | 1.42e-23 | 99.8 |
| Msa0192930 | MtrunA17_Chr2g0291581 | 30.415 | 217 | 139 | 5 | 42 | 257 | 71 | 276 | 4.44e-22 | 95.1 |
| Msa0192930 | MtrunA17_Chr8g0363841 | 29.646 | 226 | 151 | 4 | 38 | 255 | 10 | 235 | 5.91e-22 | 94.7 |
| Msa0192930 | MtrunA17_Chr3g0080351 | 27.155 | 232 | 129 | 5 | 41 | 255 | 75 | 283 | 8.62e-21 | 91.7 |
| Msa0192930 | MtrunA17_Chr1g0202341 | 28.125 | 224 | 151 | 5 | 41 | 257 | 50 | 270 | 3.92e-20 | 89.4 |
| Msa0192930 | MtrunA17_Chr2g0324011 | 27.111 | 225 | 156 | 5 | 39 | 257 | 7 | 229 | 9.77e-20 | 88.2 |
| Msa0192930 | MtrunA17_Chr5g0448761 | 27.586 | 232 | 153 | 9 | 39 | 257 | 57 | 286 | 1.02e-18 | 85.5 |
| Msa0192930 | MtrunA17_Chr2g0287651 | 27.027 | 222 | 141 | 6 | 48 | 255 | 81 | 295 | 3.13e-16 | 78.2 |
| Msa0192930 | MtrunA17_Chr1g0203721 | 27.074 | 229 | 144 | 7 | 44 | 257 | 65 | 285 | 1.37e-14 | 73.2 |
| Msa0192930 | MtrunA17_Chr3g0082121 | 29.197 | 274 | 144 | 15 | 1 | 250 | 1 | 248 | 3.14e-14 | 72.0 |
| Msa0192930 | MtrunA17_Chr6g0458391 | 26.360 | 239 | 147 | 9 | 26 | 255 | 207 | 425 | 2.03e-13 | 69.7 |
| Msa0192930 | MtrunA17_Chr2g0276841 | 23.556 | 225 | 148 | 8 | 42 | 249 | 70 | 287 | 1.69e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192930 | AT1G76320.3 | 34.112 | 214 | 115 | 6 | 48 | 250 | 3 | 201 | 1.52e-30 | 120 |
| Msa0192930 | AT1G76320.2 | 34.112 | 214 | 115 | 6 | 48 | 250 | 3 | 201 | 1.64e-30 | 120 |
| Msa0192930 | AT1G76320.1 | 34.112 | 214 | 115 | 6 | 48 | 250 | 3 | 201 | 1.65e-30 | 120 |
| Msa0192930 | AT1G76320.4 | 34.112 | 214 | 115 | 6 | 48 | 250 | 3 | 201 | 1.65e-30 | 120 |
| Msa0192930 | AT4G15090.1 | 30.435 | 230 | 139 | 6 | 39 | 255 | 48 | 269 | 2.02e-27 | 111 |
| Msa0192930 | AT4G15090.5 | 30.435 | 230 | 139 | 6 | 39 | 255 | 48 | 269 | 2.02e-27 | 111 |
| Msa0192930 | AT4G15090.3 | 30.435 | 230 | 139 | 6 | 39 | 255 | 48 | 269 | 2.02e-27 | 111 |
| Msa0192930 | AT4G15090.2 | 30.435 | 230 | 139 | 6 | 39 | 255 | 48 | 269 | 2.02e-27 | 111 |
| Msa0192930 | AT4G15090.4 | 30.435 | 230 | 139 | 6 | 39 | 255 | 48 | 269 | 2.02e-27 | 111 |
| Msa0192930 | AT1G52520.1 | 30.483 | 269 | 155 | 9 | 9 | 257 | 37 | 293 | 3.78e-20 | 90.1 |
| Msa0192930 | AT3G22170.2 | 25.431 | 232 | 134 | 4 | 41 | 255 | 69 | 278 | 6.61e-19 | 86.3 |
| Msa0192930 | AT3G22170.1 | 25.431 | 232 | 134 | 4 | 41 | 255 | 69 | 278 | 6.61e-19 | 86.3 |
| Msa0192930 | AT4G38180.1 | 25.957 | 235 | 163 | 6 | 25 | 250 | 56 | 288 | 1.36e-16 | 79.7 |
| Msa0192930 | AT1G80010.1 | 27.074 | 229 | 150 | 8 | 41 | 257 | 94 | 317 | 1.89e-16 | 79.0 |
| Msa0192930 | AT2G27110.2 | 27.917 | 240 | 141 | 6 | 23 | 257 | 30 | 242 | 5.70e-14 | 72.0 |
| Msa0192930 | AT2G27110.1 | 27.917 | 240 | 141 | 6 | 23 | 257 | 30 | 242 | 5.70e-14 | 72.0 |
Find 30 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAAATAGCGTGCTTTGTT+AGG | 0.199235 | 2_1:+8749793 | None:intergenic |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 2_1:-8750040 | Msa0192930:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 2_1:-8749865 | Msa0192930:CDS |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 2_1:-8750033 | Msa0192930:CDS |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 2_1:-8749612 | Msa0192930:CDS |
| CATTTAATCTAGCCTTGCAC+TGG | 0.432611 | 2_1:+8749884 | None:intergenic |
| CAACTCCAAAACCCATAGAT+TGG | 0.437629 | 2_1:+8750028 | None:intergenic |
| TAAAATAGCGTGCTTTGTTA+GGG | 0.446406 | 2_1:+8749794 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 2_1:-8749656 | Msa0192930:CDS |
| AACTCCAAAACCCATAGATT+GGG | 0.473331 | 2_1:+8750029 | None:intergenic |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | 2_1:-8749664 | Msa0192930:CDS |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 2_1:-8749480 | Msa0192930:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | 2_1:-8749685 | Msa0192930:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 2_1:-8749944 | Msa0192930:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 2_1:-8750039 | Msa0192930:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 2_1:-8749479 | Msa0192930:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 2_1:-8749607 | Msa0192930:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 2_1:-8750181 | Msa0192930:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 2_1:-8749756 | Msa0192930:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 2_1:-8749733 | Msa0192930:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | 2_1:-8749627 | Msa0192930:CDS |
| ATTTAATCTAGCCTTGCACT+GGG | 0.609429 | 2_1:+8749885 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.618627 | 2_1:-8750168 | Msa0192930:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 2_1:-8749611 | Msa0192930:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 2_1:+8750090 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 2_1:-8749613 | Msa0192930:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 2_1:-8749596 | Msa0192930:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 2_1:-8749964 | Msa0192930:CDS |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679119 | 2_1:-8750169 | Msa0192930:CDS |
| ATGAAGAGGAAATCAGAGAG+GGG | 0.681620 | 2_1:-8750167 | Msa0192930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTATCATATAA+AGG | + | chr2_1:8749541-8749560 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTATCATATAA+AGG | + | chr2_1:8749541-8749560 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr2_1:8749683-8749702 | Msa0192930:CDS | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr2_1:8749683-8749702 | Msa0192930:CDS | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr2_1:8749482-8749501 | Msa0192930:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr2_1:8749570-8749589 | Msa0192930:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr2_1:8749601-8749620 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr2_1:8750118-8750137 | Msa0192930:CDS | 20.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr2_1:8749482-8749501 | Msa0192930:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr2_1:8749570-8749589 | Msa0192930:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr2_1:8749601-8749620 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr2_1:8750118-8750137 | Msa0192930:CDS | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr2_1:8749481-8749500 | Msa0192930:CDS | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr2_1:8749897-8749916 | Msa0192930:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr2_1:8749898-8749917 | Msa0192930:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr2_1:8750029-8750048 | Msa0192930:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr2_1:8750267-8750286 | Msa0192930:intron | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr2_1:8749481-8749500 | Msa0192930:CDS | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr2_1:8749897-8749916 | Msa0192930:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr2_1:8749898-8749917 | Msa0192930:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr2_1:8750029-8750048 | Msa0192930:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr2_1:8750267-8750286 | Msa0192930:intron | 25.0% |
| ATGGGTAATAACCCAATTTA+AGG | + | chr2_1:8749496-8749515 | None:intergenic | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr2_1:8749713-8749732 | Msa0192930:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr2_1:8749992-8750011 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr2_1:8749993-8750012 | None:intergenic | 30.0% |
| ! | TAAAATAGCGTGCTTTGTTA+GGG | + | chr2_1:8750103-8750122 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr2_1:8750193-8750212 | Msa0192930:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | - | chr2_1:8750230-8750249 | Msa0192930:intron | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr2_1:8750238-8750257 | Msa0192930:intron | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr2_1:8750397-8750416 | Msa0192930:intron | 30.0% |
| ATGGGTAATAACCCAATTTA+AGG | + | chr2_1:8749496-8749515 | None:intergenic | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr2_1:8749713-8749732 | Msa0192930:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr2_1:8749992-8750011 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr2_1:8749993-8750012 | None:intergenic | 30.0% |
| ! | TAAAATAGCGTGCTTTGTTA+GGG | + | chr2_1:8750103-8750122 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr2_1:8750193-8750212 | Msa0192930:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | - | chr2_1:8750230-8750249 | Msa0192930:intron | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr2_1:8750238-8750257 | Msa0192930:intron | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr2_1:8750397-8750416 | Msa0192930:intron | 30.0% |
| !! | GTAGTTTGATCAGTTGATGA+GGG | + | chr2_1:8749519-8749538 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr2_1:8749788-8749807 | Msa0192930:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr2_1:8749807-8749826 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr2_1:8749855-8749874 | Msa0192930:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr2_1:8749868-8749887 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr2_1:8749950-8749969 | Msa0192930:CDS | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | + | chr2_1:8749999-8750018 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | - | chr2_1:8749998-8750017 | Msa0192930:CDS | 35.0% | |
| !! | ATTTAATCTAGCCTTGCACT+GGG | + | chr2_1:8750012-8750031 | None:intergenic | 35.0% |
| ! | CTAAAATAGCGTGCTTTGTT+AGG | + | chr2_1:8750104-8750123 | None:intergenic | 35.0% |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr2_1:8750135-8750154 | Msa0192930:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr2_1:8750161-8750180 | Msa0192930:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr2_1:8750209-8750228 | Msa0192930:intron | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr2_1:8750396-8750415 | Msa0192930:intron | 35.0% |
| !! | GTAGTTTGATCAGTTGATGA+GGG | + | chr2_1:8749519-8749538 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr2_1:8749788-8749807 | Msa0192930:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr2_1:8749807-8749826 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr2_1:8749855-8749874 | Msa0192930:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr2_1:8749868-8749887 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr2_1:8749950-8749969 | Msa0192930:CDS | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | + | chr2_1:8749999-8750018 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | - | chr2_1:8749998-8750017 | Msa0192930:CDS | 35.0% | |
| !! | ATTTAATCTAGCCTTGCACT+GGG | + | chr2_1:8750012-8750031 | None:intergenic | 35.0% |
| ! | CTAAAATAGCGTGCTTTGTT+AGG | + | chr2_1:8750104-8750123 | None:intergenic | 35.0% |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr2_1:8750135-8750154 | Msa0192930:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr2_1:8750161-8750180 | Msa0192930:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr2_1:8750209-8750228 | Msa0192930:intron | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr2_1:8750396-8750415 | Msa0192930:intron | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr2_1:8749514-8749533 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr2_1:8749515-8749534 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | + | chr2_1:8749520-8749539 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr2_1:8749725-8749744 | Msa0192930:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr2_1:8749726-8749745 | Msa0192930:CDS | 40.0% | |
| ATGAAGAGGAAATCAGAGAG+GGG | - | chr2_1:8749727-8749746 | Msa0192930:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr2_1:8749792-8749811 | Msa0192930:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr2_1:8749854-8749873 | Msa0192930:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr2_1:8749861-8749880 | Msa0192930:CDS | 40.0% |
| CAACTCCAAAACCCATAGAT+TGG | + | chr2_1:8749869-8749888 | None:intergenic | 40.0% | |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr2_1:8749930-8749949 | Msa0192930:CDS | 40.0% | |
| !! | CATTTAATCTAGCCTTGCAC+TGG | + | chr2_1:8750013-8750032 | None:intergenic | 40.0% |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr2_1:8750146-8750165 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr2_1:8749514-8749533 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr2_1:8749515-8749534 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | + | chr2_1:8749520-8749539 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr2_1:8749725-8749744 | Msa0192930:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr2_1:8749726-8749745 | Msa0192930:CDS | 40.0% | |
| ATGAAGAGGAAATCAGAGAG+GGG | - | chr2_1:8749727-8749746 | Msa0192930:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr2_1:8749792-8749811 | Msa0192930:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr2_1:8749854-8749873 | Msa0192930:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr2_1:8749861-8749880 | Msa0192930:CDS | 40.0% |
| CAACTCCAAAACCCATAGAT+TGG | + | chr2_1:8749869-8749888 | None:intergenic | 40.0% | |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr2_1:8749930-8749949 | Msa0192930:CDS | 40.0% | |
| !! | CATTTAATCTAGCCTTGCAC+TGG | + | chr2_1:8750013-8750032 | None:intergenic | 40.0% |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr2_1:8750146-8750165 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr2_1:8750138-8750157 | Msa0192930:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr2_1:8750281-8750300 | Msa0192930:intron | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr2_1:8750282-8750301 | Msa0192930:intron | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr2_1:8750138-8750157 | Msa0192930:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr2_1:8750281-8750300 | Msa0192930:intron | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr2_1:8750282-8750301 | Msa0192930:intron | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr2_1:8750283-8750302 | Msa0192930:intron | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr2_1:8750414-8750433 | Msa0192930:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr2_1:8750415-8750434 | Msa0192930:intron | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr2_1:8750283-8750302 | Msa0192930:intron | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr2_1:8750414-8750433 | Msa0192930:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr2_1:8750415-8750434 | Msa0192930:intron | 50.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr2_1:8750287-8750306 | Msa0192930:intron | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr2_1:8750298-8750317 | Msa0192930:intron | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr2_1:8750287-8750306 | Msa0192930:intron | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr2_1:8750298-8750317 | Msa0192930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8749459 | 8750457 | 8749459 | ID=Msa0192930;Name=Msa0192930 |
| chr2_1 | mRNA | 8749459 | 8750457 | 8749459 | ID=Msa0192930-mRNA-1;Parent=Msa0192930;Name=Msa0192930-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.5|1|1|2|0|258 |
| chr2_1 | exon | 8750436 | 8750457 | 8750436 | ID=Msa0192930-mRNA-1:exon:4026;Parent=Msa0192930-mRNA-1 |
| chr2_1 | exon | 8749459 | 8750213 | 8749459 | ID=Msa0192930-mRNA-1:exon:4025;Parent=Msa0192930-mRNA-1 |
| chr2_1 | CDS | 8750436 | 8750457 | 8750436 | ID=Msa0192930-mRNA-1:cds;Parent=Msa0192930-mRNA-1 |
| chr2_1 | CDS | 8749459 | 8750213 | 8749459 | ID=Msa0192930-mRNA-1:cds;Parent=Msa0192930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
