AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193380 MtrunA17_Chr2g0282871 93.831 308 18 1 1 307 1 308 0.0 607
Msa0193380 MtrunA17_Chr4g0046431 62.462 325 86 9 1 301 1 313 1.29e-137 392
Msa0193380 MtrunA17_Chr8g0367761 69.507 223 53 3 1 208 1 223 8.86e-114 329
Msa0193380 MtrunA17_Chr4g0040541 60.662 272 100 6 12 278 5 274 2.39e-110 321
Msa0193380 MtrunA17_Chr2g0324961 58.219 292 108 6 1 289 1 281 1.19e-105 309
Msa0193380 MtrunA17_Chr8g0389661 61.233 227 74 5 8 224 3 225 7.88e-88 271
Msa0193380 MtrunA17_Chr1g0198751 50.000 248 118 4 2 246 7 251 1.66e-73 234
Msa0193380 MtrunA17_Chr5g0422431 58.763 194 77 2 27 220 34 224 1.72e-73 233
Msa0193380 MtrunA17_Chr7g0227071 56.216 185 74 3 31 212 35 215 8.10e-67 217
Msa0193380 MtrunA17_Chr1g0198741 51.969 127 60 1 108 233 7 133 1.58e-34 127
Msa0193380 MtrunA17_Chr6g0484441 32.317 164 92 6 53 213 5 152 3.04e-15 75.1
Msa0193380 MtrunA17_Chr7g0217711 32.075 159 91 4 36 193 2 144 9.99e-15 71.2
Msa0193380 MtrunA17_Chr7g0217721 30.457 197 120 4 36 231 2 182 1.00e-14 73.9
Msa0193380 MtrunA17_Chr4g0060931 34.507 142 76 5 53 193 17 142 2.09e-13 70.1
Msa0193380 MtrunA17_Chr7g0253011 31.111 180 93 9 46 212 10 171 3.03e-13 69.7
Msa0193380 MtrunA17_Chr6g0461661 34.104 173 77 11 53 210 18 168 5.31e-13 68.9
Msa0193380 MtrunA17_Chr3g0091921 33.803 142 77 5 53 193 16 141 5.74e-13 68.2
Msa0193380 MtrunA17_Chr3g0139331 31.429 175 97 7 41 210 1 157 6.78e-13 68.2
Msa0193380 MtrunA17_Chr7g0214071 33.333 147 70 8 53 193 15 139 2.55e-12 65.9
Msa0193380 MtrunA17_Chr5g0398971 25.792 221 136 8 47 259 1 201 8.65e-12 65.1
Msa0193380 MtrunA17_Chr1g0183741 29.101 189 105 8 52 233 9 175 1.00e-11 64.3
Msa0193380 MtrunA17_Chr8g0345701 33.974 156 74 8 52 192 6 147 1.34e-11 62.4
Msa0193380 MtrunA17_Chr2g0316971 32.738 168 86 9 53 210 23 173 1.86e-11 64.3
Msa0193380 MtrunA17_Chr8g0385991 32.000 150 79 8 48 193 9 139 1.90e-11 62.8
Msa0193380 MtrunA17_Chr7g0261411 29.448 163 96 6 52 211 9 155 9.29e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193380 AT4G28500.1 64.192 229 75 3 1 222 1 229 1.73e-106 313
Msa0193380 AT1G28470.1 56.537 283 91 6 1 252 1 282 2.83e-105 310
Msa0193380 AT4G29230.3 61.883 223 70 3 6 217 2 220 2.54e-91 278
Msa0193380 AT4G29230.1 61.883 223 70 3 6 217 2 220 1.17e-90 279
Msa0193380 AT4G29230.2 60.987 223 71 3 6 217 2 219 1.43e-89 276
Msa0193380 AT5G56620.2 62.944 197 59 4 32 217 25 218 1.29e-81 253
Msa0193380 AT5G56620.3 62.944 197 59 4 32 217 25 218 1.69e-81 253
Msa0193380 AT5G56620.1 60.476 210 69 4 19 217 12 218 2.29e-81 251
Msa0193380 AT1G25580.1 56.545 191 74 4 27 217 34 215 5.17e-69 221
Msa0193380 AT5G14490.2 49.756 205 98 4 25 228 29 229 1.61e-56 184
Msa0193380 AT5G14490.1 50.500 200 94 4 30 228 37 232 4.39e-56 185
Msa0193380 AT5G14490.4 50.500 200 94 4 30 228 34 229 4.71e-56 185
Msa0193380 AT5G14490.3 50.500 200 94 4 30 228 37 232 6.21e-56 185
Msa0193380 AT3G01600.1 49.462 186 90 3 30 214 34 216 1.55e-50 171
Msa0193380 AT3G04060.1 32.609 184 98 7 41 215 8 174 4.33e-19 86.7
Msa0193380 AT5G18270.2 33.514 185 94 10 41 215 10 175 2.76e-16 78.6
Msa0193380 AT5G18270.1 33.514 185 94 10 41 215 10 175 4.74e-16 77.8
Msa0193380 AT3G18400.1 33.803 142 77 5 53 193 5 130 1.00e-14 73.9
Msa0193380 AT1G33060.1 30.645 186 94 9 40 212 11 174 1.05e-13 72.0
Msa0193380 AT1G33060.2 30.645 186 94 9 40 212 11 174 1.07e-13 72.0
Msa0193380 AT4G35580.1 31.551 187 93 10 46 219 2 166 6.03e-13 69.3
Msa0193380 AT4G35580.2 31.551 187 93 10 46 219 2 166 7.30e-13 69.3
Msa0193380 AT4G35580.3 31.551 187 93 10 46 219 2 166 7.36e-13 69.3
Msa0193380 AT2G24430.2 29.586 169 97 6 52 214 15 167 2.75e-12 66.6
Msa0193380 AT2G24430.1 29.586 169 97 6 52 214 15 167 2.75e-12 66.6
Msa0193380 AT1G76420.1 29.279 222 128 11 52 265 21 221 1.58e-11 64.7
Msa0193380 AT1G01720.1 30.464 151 83 6 47 194 1 132 1.97e-11 63.9
Msa0193380 AT3G29035.1 32.867 143 77 5 53 193 24 149 2.71e-11 63.9
Msa0193380 AT2G33480.2 29.412 187 98 10 41 221 7 165 5.38e-11 62.4
Msa0193380 AT2G33480.1 29.101 189 98 10 41 221 7 167 6.32e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTAACCATTTACATTTA+TGG 0.087289 2_1:-9208529 Msa0193380:three_prime_UTR
ATTCCATATATTTGGAATTT+TGG 0.093579 2_1:-9208475 Msa0193380:three_prime_UTR
GTTGGCTTATTCCATATATT+TGG 0.132174 2_1:-9208483 Msa0193380:three_prime_UTR
TACTGGAGAGAAAGTAAAAT+TGG 0.236953 2_1:-9208596 Msa0193380:exon
CATCCAAAATTCCAAATATA+TGG 0.268465 2_1:+9208472 None:intergenic
TCCAATCCCATAAATGTAAA+TGG 0.274697 2_1:+9208522 None:intergenic
AGTTAACCATTTACATTTAT+GGG 0.277883 2_1:-9208528 Msa0193380:three_prime_UTR
GAAACAAGATGGCACAAAAC+TGG 0.293534 2_1:-9209074 Msa0193380:CDS
CTTAATCTTTCCTACAATAC+TGG 0.298632 2_1:+9211131 None:intergenic
GTAAAATTGGAAGAGCTTCT+TGG 0.309911 2_1:-9208583 Msa0193380:exon
TCTAGTACTTCTACATCATT+TGG 0.314489 2_1:+9210675 None:intergenic
TCCACAAGAGCTACATTGTT+GGG 0.338920 2_1:+9208768 None:intergenic
ACCATTTACATTTATGGGAT+TGG 0.340052 2_1:-9208523 Msa0193380:three_prime_UTR
CCAACGCTTCAAGGAGATAA+TGG 0.355602 2_1:-9210588 Msa0193380:CDS
GAGCAATAGCAAACACAGTT+TGG 0.360154 2_1:-9211354 None:intergenic
TTATTAGGGACCAGTATTGT+AGG 0.377024 2_1:-9211141 Msa0193380:intron
ATCACCCAGTTAGTCTTCTC+TGG 0.385881 2_1:+9208963 None:intergenic
TGTAGAAGTACTAGAGCATT+TGG 0.390413 2_1:-9210667 Msa0193380:CDS
CATTTATGGGATTGGAATGA+AGG 0.400089 2_1:-9208515 Msa0193380:three_prime_UTR
GAAAACCAGAGAAGACTAAC+TGG 0.406375 2_1:-9208968 Msa0193380:CDS
AACTATTATTCGCTTATCAA+TGG 0.414728 2_1:-9208640 Msa0193380:CDS
GTAGGAAAGATTAAGAACTA+TGG 0.414762 2_1:-9211123 Msa0193380:exon
GGGTGGAGTTAATGAATTGC+CGG 0.417191 2_1:-9210724 Msa0193380:CDS
CATGTTGTCTAGGCTGTGTC+TGG 0.424066 2_1:+9208871 None:intergenic
TCACTTTGAACAGACATGTT+TGG 0.426034 2_1:+9208666 None:intergenic
AGCAATAGCAAACACAGTTT+GGG 0.447566 2_1:-9211353 None:intergenic
CTAGTACTTCTACATCATTT+GGG 0.458512 2_1:+9210676 None:intergenic
GAGTTCATACCAACGCTTCA+AGG 0.459148 2_1:-9210597 Msa0193380:CDS
CCATTATCTCCTTGAAGCGT+TGG 0.461132 2_1:+9210588 None:intergenic
GGGTCAAATTTCACTCCAGC+TGG 0.465906 2_1:+9210696 None:intergenic
GGGCTGCACTGTTATTATCA+TGG 0.468166 2_1:+9208790 None:intergenic
CTTCTTCATTCATACCAAGA+TGG 0.471328 2_1:+9208931 None:intergenic
ATATGCATGTTGGTCATAGT+AGG 0.471621 2_1:-9208713 Msa0193380:CDS
GCCGCATGAGGGGCATTCAA+TGG 0.476343 2_1:+9211019 None:intergenic
TACACCAACTATTGCAAAGA+AGG 0.482059 2_1:-9208990 Msa0193380:CDS
CCTTCAAAAGCATACACAAC+AGG 0.484981 2_1:-9209140 Msa0193380:CDS
TACTATGACCAACATGCATA+TGG 0.492828 2_1:+9208715 None:intergenic
TGCAAACAAAGTAAGAGTAC+TGG 0.494119 2_1:-9208613 Msa0193380:CDS
GAATGAAGGAAGGAATAAGT+TGG 0.496812 2_1:-9208501 Msa0193380:three_prime_UTR
GAATTGCCGGGGTTACCAGC+TGG 0.498475 2_1:-9210711 Msa0193380:CDS
GGTGGAGTTAATGAATTGCC+GGG 0.501114 2_1:-9210723 Msa0193380:CDS
AAAATAATCGACAAAGGAAG+TGG 0.506740 2_1:-9208813 Msa0193380:CDS
TTCAATATTATGGCCGCATG+AGG 0.506854 2_1:+9211007 None:intergenic
AAATCCCTTCACAACACCAT+TGG 0.513981 2_1:+9209031 None:intergenic
AACATGTCTGTTCAAAGTGA+TGG 0.516868 2_1:-9208663 Msa0193380:CDS
TTCCACAAGAGCTACATTGT+TGG 0.516933 2_1:+9208767 None:intergenic
TCAATATTATGGCCGCATGA+GGG 0.518397 2_1:+9211008 None:intergenic
GTTGCAGGAGTTAGCAAAGA+TGG 0.520564 2_1:-9209188 Msa0193380:intron
ATGGAATTACCATGTTGTCT+AGG 0.524147 2_1:+9208861 None:intergenic
TATGGGATTGGAATGAAGGA+AGG 0.524998 2_1:-9208511 Msa0193380:three_prime_UTR
CCCCAACAATGTAGCTCTTG+TGG 0.528333 2_1:-9208769 Msa0193380:CDS
TCATTGAATCGAAGGAAAAG+TGG 0.534296 2_1:-9211307 Msa0193380:five_prime_UTR
AAGAAGGAATTGAAACAAGA+TGG 0.540463 2_1:-9209085 Msa0193380:CDS
GTGATGCATCAATACCATCT+TGG 0.542364 2_1:-9208945 Msa0193380:CDS
ATGAATGAAGAAGAAAGAGA+TGG 0.549873 2_1:-9208921 Msa0193380:CDS
AAACAAGATGGCACAAAACT+GGG 0.551473 2_1:-9209073 Msa0193380:CDS
TTCACTCCAGCTGGTAACCC+CGG 0.559582 2_1:+9210705 None:intergenic
AAGGTTCACACTGATGAAGA+AGG 0.564034 2_1:-9209101 Msa0193380:CDS
CAATATTATGGCCGCATGAG+GGG 0.567135 2_1:+9211009 None:intergenic
AGGAACAAGGAAAAGAAGAA+AGG 0.568088 2_1:-9209120 Msa0193380:CDS
ATGTTTGGTATAATCAGTTG+TGG 0.571913 2_1:+9208681 None:intergenic
TATGCATGTTGGTCATAGTA+GGG 0.574413 2_1:-9208712 Msa0193380:CDS
CCACAAGAGCTACATTGTTG+GGG 0.578626 2_1:+9208769 None:intergenic
AAGTTCAATCATTGAATCGA+AGG 0.586463 2_1:-9211315 Msa0193380:five_prime_UTR
ACACACCCAGCACAACTACC+AGG 0.587266 2_1:-9210555 Msa0193380:intron
GGTATGAACTCATCAATAAG+TGG 0.587548 2_1:+9210609 None:intergenic
CATTGAATCGAAGGAAAAGT+GGG 0.589078 2_1:-9211306 Msa0193380:five_prime_UTR
CAGACACAGCCTAGACAACA+TGG 0.593480 2_1:-9208870 Msa0193380:CDS
AATTATGACCATATGCATGT+TGG 0.599378 2_1:-9208723 Msa0193380:CDS
ACCATTGAATGCCCCTCATG+CGG 0.616642 2_1:-9211020 Msa0193380:CDS
AGAAGTACTAGAGCATTTGG+AGG 0.620573 2_1:-9210664 Msa0193380:CDS
AAAGATTAAGAACTATGGCA+TGG 0.622011 2_1:-9211118 Msa0193380:exon
AAGCATACACAACAGGAACA+AGG 0.626885 2_1:-9209133 Msa0193380:CDS
CACAAGAGCTACATTGTTGG+GGG 0.638019 2_1:+9208770 None:intergenic
AAGGAAAAGTGGGAGCACAC+AGG 0.672003 2_1:-9211296 Msa0193380:intron
GTGGAGTTAATGAATTGCCG+GGG 0.680068 2_1:-9210722 Msa0193380:CDS
AAAACCAGAGAAGACTAACT+GGG 0.696934 2_1:-9208967 Msa0193380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATAGATTTTAATTATA+AGG - chr2_1:9209430-9209449 Msa0193380:intron 10.0%
!!! TTTTTAAAAATGGATTTTTA+TGG + chr2_1:9209646-9209665 None:intergenic 10.0%
!!! AAAAAAGTGATTTTTTTTTA+AGG - chr2_1:9209821-9209840 Msa0193380:intron 10.0%
!!! AAAAAGTGATTTTTTTTTAA+GGG - chr2_1:9209822-9209841 Msa0193380:intron 10.0%
!! TTATCATAAGTTAATAAAAA+GGG + chr2_1:9209953-9209972 None:intergenic 10.0%
!! ATTATCATAAGTTAATAAAA+AGG + chr2_1:9209954-9209973 None:intergenic 10.0%
!! ATGAAGGAAAAAAAAAAAAA+GGG + chr2_1:9208572-9208591 None:intergenic 15.0%
!! TATGAAGGAAAAAAAAAAAA+AGG + chr2_1:9208573-9208592 None:intergenic 15.0%
!!! CATATTTTGCTTTATTATTA+GGG - chr2_1:9208628-9208647 Msa0193380:CDS 15.0%
!!! GATTTTTTACTTCAATATTA+TGG + chr2_1:9208789-9208808 None:intergenic 15.0%
!! TAATATTGAAGTAAAAAATC+AGG - chr2_1:9208789-9208808 Msa0193380:CDS 15.0%
!! TTAAATTAAATGTAAAAACC+TGG + chr2_1:9209249-9209268 None:intergenic 15.0%
!! ATTAACATAATTTAGAGATT+TGG - chr2_1:9209280-9209299 Msa0193380:intron 15.0%
!!! AATAGATTTTAATTATAAGG+CGG - chr2_1:9209433-9209452 Msa0193380:intron 15.0%
!!! GAACTCATTTTTTTTAAAAA+TGG + chr2_1:9209656-9209675 None:intergenic 15.0%
!! AAAGAAAATTATTTGTCAAT+CGG - chr2_1:9209910-9209929 Msa0193380:intron 15.0%
!!! TAATTATTTTTTGTGAATTG+TGG - chr2_1:9209970-9209989 Msa0193380:intron 15.0%
!!! CATTAACTTTCTTTTTATTA+TGG + chr2_1:9210000-9210019 None:intergenic 15.0%
!! ATATAGATGGAAAAATATGA+AGG + chr2_1:9208588-9208607 None:intergenic 20.0%
!! TAAAGCAAAATATGGAAAAA+GGG + chr2_1:9208622-9208641 None:intergenic 20.0%
!! ATAAAGCAAAATATGGAAAA+AGG + chr2_1:9208623-9208642 None:intergenic 20.0%
!! CCTAATAATAAAGCAAAATA+TGG + chr2_1:9208630-9208649 None:intergenic 20.0%
!!! CCATATTTTGCTTTATTATT+AGG - chr2_1:9208627-9208646 Msa0193380:CDS 20.0%
!! TAAACTAAAGGAGTTAATAT+TGG + chr2_1:9209002-9209021 None:intergenic 20.0%
!! CACACAAATTAATAAACTAA+AGG + chr2_1:9209014-9209033 None:intergenic 20.0%
!!! TTTGATGATTTTTGATACAT+AGG - chr2_1:9209038-9209057 Msa0193380:CDS 20.0%
!!! TTGATGATTTTTGATACATA+GGG - chr2_1:9209039-9209058 Msa0193380:CDS 20.0%
!! AAATTTATGAGATCTAAATG+TGG + chr2_1:9209490-9209509 None:intergenic 20.0%
!!! TTTTTTTAAAGCTGAAACAA+AGG + chr2_1:9209539-9209558 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACTACA+AGG + chr2_1:9209700-9209719 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr2_1:9209802-9209821 None:intergenic 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG - chr2_1:9209862-9209881 Msa0193380:intron 20.0%
!! AAGAAAATTATTTGTCAATC+GGG - chr2_1:9209911-9209930 Msa0193380:intron 20.0%
!!! TAATTTGTTACTGTAACATT+AGG - chr2_1:9210256-9210275 Msa0193380:intron 20.0%
!!! AAAAATTGTTCCTTAAGTTT+TGG - chr2_1:9210307-9210326 Msa0193380:intron 20.0%
!!! ACCTTTTTTTTTTTTTGTGT+TGG - chr2_1:9210340-9210359 Msa0193380:intron 20.0%
!!! CCTTTTTTTTTTTTTGTGTT+GGG - chr2_1:9210341-9210360 Msa0193380:intron 20.0%
!! GTGATACATTATTAATCAAA+AGG + chr2_1:9210412-9210431 None:intergenic 20.0%
!! TATGAAAAAATAATCGACAA+AGG - chr2_1:9210964-9210983 Msa0193380:intron 20.0%
!! AGTTAACCATTTACATTTAT+GGG - chr2_1:9211255-9211274 Msa0193380:intron 20.0%
!!! ATTCCATATATTTGGAATTT+TGG - chr2_1:9211308-9211327 Msa0193380:five_prime_UTR 20.0%
! GGTGAGAAATTAAATATAGA+TGG + chr2_1:9208601-9208620 None:intergenic 25.0%
! AAAAATCAGGTACTAATCAA+TGG - chr2_1:9208802-9208821 Msa0193380:CDS 25.0%
! CATTGCATGTGTTAATTATT+GGG - chr2_1:9209317-9209336 Msa0193380:intron 25.0%
!! GTTAATTAATTTGATGCATG+CGG + chr2_1:9209375-9209394 None:intergenic 25.0%
! ATAGAAGTAGTTCTTTACTT+AGG - chr2_1:9209510-9209529 Msa0193380:intron 25.0%
!!! AATGGATTTTTATGGATAGT+AGG + chr2_1:9209638-9209657 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr2_1:9209735-9209754 Msa0193380:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG + chr2_1:9209739-9209758 None:intergenic 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG - chr2_1:9209863-9209882 Msa0193380:intron 25.0%
! AGAAAATTATTTGTCAATCG+GGG - chr2_1:9209912-9209931 Msa0193380:intron 25.0%
!!! TCAAATTGCTATTGATGTTT+TGG + chr2_1:9210223-9210242 None:intergenic 25.0%
! GTTACAGTAACAAATTACTT+AGG + chr2_1:9210253-9210272 None:intergenic 25.0%
! CCCAACACAAAAAAAAAAAA+AGG + chr2_1:9210344-9210363 None:intergenic 25.0%
! GTACCAAAAGAAATAGAATT+GGG + chr2_1:9210434-9210453 None:intergenic 25.0%
! TGTACCAAAAGAAATAGAAT+TGG + chr2_1:9210435-9210454 None:intergenic 25.0%
! ATATGTCAAATTAGAGATGA+AGG - chr2_1:9210506-9210525 Msa0193380:intron 25.0%
!!! GACACTTATTTTAAAAGAGA+CGG - chr2_1:9210535-9210554 Msa0193380:intron 25.0%
! AACTATTATTCGCTTATCAA+TGG - chr2_1:9211143-9211162 Msa0193380:intron 25.0%
! CAGTTAACCATTTACATTTA+TGG - chr2_1:9211254-9211273 Msa0193380:intron 25.0%
! CATCCAAAATTCCAAATATA+TGG + chr2_1:9211314-9211333 None:intergenic 25.0%
!! GGAATTTTGGATGTATTATA+TGG - chr2_1:9211321-9211340 Msa0193380:five_prime_UTR 25.0%
!! ATTTTGGATGTATTATATGG+TGG - chr2_1:9211324-9211343 Msa0193380:five_prime_UTR 25.0%
AAGTTCAATCATTGAATCGA+AGG - chr2_1:9208468-9208487 Msa0193380:three_prime_UTR 30.0%
! TACAGTAGTTTGTATCTTTC+GGG + chr2_1:9208543-9208562 None:intergenic 30.0%
! CTACAGTAGTTTGTATCTTT+CGG + chr2_1:9208544-9208563 None:intergenic 30.0%
CTTAATCTTTCCTACAATAC+TGG + chr2_1:9208655-9208674 None:intergenic 30.0%
GTAGGAAAGATTAAGAACTA+TGG - chr2_1:9208660-9208679 Msa0193380:CDS 30.0%
AAAGATTAAGAACTATGGCA+TGG - chr2_1:9208665-9208684 Msa0193380:CDS 30.0%
TTTGATCTTAAATCCTGCTA+AGG - chr2_1:9208848-9208867 Msa0193380:CDS 30.0%
!! GATTCGACAAAGTTTTATGT+TGG + chr2_1:9208922-9208941 None:intergenic 30.0%
! ATGATTTTTGATACATAGGG+TGG - chr2_1:9209042-9209061 Msa0193380:CDS 30.0%
CTAGTACTTCTACATCATTT+GGG + chr2_1:9209110-9209129 None:intergenic 30.0%
TCTAGTACTTCTACATCATT+TGG + chr2_1:9209111-9209130 None:intergenic 30.0%
GCATTGCATGTGTTAATTAT+TGG - chr2_1:9209316-9209335 Msa0193380:intron 30.0%
TGGAGAGAATAAATGTTATG+TGG + chr2_1:9209470-9209489 None:intergenic 30.0%
AAACCAATGAATGCTTGAAT+TGG - chr2_1:9210088-9210107 Msa0193380:intron 30.0%
!! ACTTGCTTTTCCAAAACTTA+AGG + chr2_1:9210320-9210339 None:intergenic 30.0%
!! TCACCCAATTCTATTTCTTT+TGG - chr2_1:9210428-9210447 Msa0193380:intron 30.0%
ATTGTTACCTAAAATGTTGC+AGG - chr2_1:9210580-9210599 Msa0193380:CDS 30.0%
!!! AAATTCGCCACTTTTTTCAT+AGG - chr2_1:9210620-9210639 Msa0193380:CDS 30.0%
AAGAAGGAATTGAAACAAGA+TGG - chr2_1:9210698-9210717 Msa0193380:CDS 30.0%
!!! ACTAGAGCAATTTTTTCCAA+TGG - chr2_1:9210736-9210755 Msa0193380:intron 30.0%
! TTTTCCTTCTTTGCAATAGT+TGG + chr2_1:9210800-9210819 None:intergenic 30.0%
ATGAATGAAGAAGAAAGAGA+TGG - chr2_1:9210862-9210881 Msa0193380:intron 30.0%
! CGAATCTTTTACGTTGTTAA+TGG + chr2_1:9210944-9210963 None:intergenic 30.0%
AAAATAATCGACAAAGGAAG+TGG - chr2_1:9210970-9210989 Msa0193380:intron 30.0%
AATTATGACCATATGCATGT+TGG - chr2_1:9211060-9211079 Msa0193380:CDS 30.0%
ATGTTTGGTATAATCAGTTG+TGG + chr2_1:9211105-9211124 None:intergenic 30.0%
TACTGGAGAGAAAGTAAAAT+TGG - chr2_1:9211187-9211206 Msa0193380:intron 30.0%
ACCATTTACATTTATGGGAT+TGG - chr2_1:9211260-9211279 Msa0193380:intron 30.0%
TCCAATCCCATAAATGTAAA+TGG + chr2_1:9211264-9211283 None:intergenic 30.0%
! GTTGGCTTATTCCATATATT+TGG - chr2_1:9211300-9211319 Msa0193380:five_prime_UTR 30.0%
TCATTGAATCGAAGGAAAAG+TGG - chr2_1:9208476-9208495 Msa0193380:three_prime_UTR 35.0%
CATTGAATCGAAGGAAAAGT+GGG - chr2_1:9208477-9208496 Msa0193380:three_prime_UTR 35.0%
TTATTAGGGACCAGTATTGT+AGG - chr2_1:9208642-9208661 Msa0193380:CDS 35.0%
!! TGTCCTTTTAATTACCAGAC+CGG + chr2_1:9208874-9208893 None:intergenic 35.0%
GTCTGGTAATTAAAAGGACA+GGG - chr2_1:9208874-9208893 Msa0193380:CDS 35.0%
!! TGTAGAAGTACTAGAGCATT+TGG - chr2_1:9209116-9209135 Msa0193380:CDS 35.0%
GGTATGAACTCATCAATAAG+TGG + chr2_1:9209177-9209196 None:intergenic 35.0%
AACACATGCAATGCATCAAA+CGG + chr2_1:9209310-9209329 None:intergenic 35.0%
TTTCTTTGCTTGCAATTGCA+AGG + chr2_1:9209897-9209916 None:intergenic 35.0%
TTGCCAATTCAAGCATTCAT+TGG + chr2_1:9210094-9210113 None:intergenic 35.0%
ATGACCACCAAACTCTAAAT+AGG - chr2_1:9210118-9210137 Msa0193380:intron 35.0%
TGACCACCAAACTCTAAATA+GGG - chr2_1:9210119-9210138 Msa0193380:intron 35.0%
TTGAAGGCCTATGAAAAAAG+TGG + chr2_1:9210630-9210649 None:intergenic 35.0%
AGGAACAAGGAAAAGAAGAA+AGG - chr2_1:9210663-9210682 Msa0193380:CDS 35.0%
AAACAAGATGGCACAAAACT+GGG - chr2_1:9210710-9210729 Msa0193380:CDS 35.0%
!!! TTTTTCCAATGGTGTTGTGA+AGG - chr2_1:9210747-9210766 Msa0193380:intron 35.0%
!!! TTTTCCAATGGTGTTGTGAA+GGG - chr2_1:9210748-9210767 Msa0193380:intron 35.0%
TACACCAACTATTGCAAAGA+AGG - chr2_1:9210793-9210812 Msa0193380:intron 35.0%
AAAACCAGAGAAGACTAACT+GGG - chr2_1:9210816-9210835 Msa0193380:intron 35.0%
CTTCTTCATTCATACCAAGA+TGG + chr2_1:9210855-9210874 None:intergenic 35.0%
ATGGAATTACCATGTTGTCT+AGG + chr2_1:9210925-9210944 None:intergenic 35.0%
TACTATGACCAACATGCATA+TGG + chr2_1:9211071-9211090 None:intergenic 35.0%
ATATGCATGTTGGTCATAGT+AGG - chr2_1:9211070-9211089 Msa0193380:CDS 35.0%
TATGCATGTTGGTCATAGTA+GGG - chr2_1:9211071-9211090 Msa0193380:CDS 35.0%
TCACTTTGAACAGACATGTT+TGG + chr2_1:9211120-9211139 None:intergenic 35.0%
AACATGTCTGTTCAAAGTGA+TGG - chr2_1:9211120-9211139 Msa0193380:exon 35.0%
! TGCAAACAAAGTAAGAGTAC+TGG - chr2_1:9211170-9211189 Msa0193380:intron 35.0%
GTAAAATTGGAAGAGCTTCT+TGG - chr2_1:9211200-9211219 Msa0193380:intron 35.0%
CATTTATGGGATTGGAATGA+AGG - chr2_1:9211268-9211287 Msa0193380:intron 35.0%
GAATGAAGGAAGGAATAAGT+TGG - chr2_1:9211282-9211301 Msa0193380:intron 35.0%
TCAATATTATGGCCGCATGA+GGG + chr2_1:9208778-9208797 None:intergenic 40.0%
TTCAATATTATGGCCGCATG+AGG + chr2_1:9208779-9208798 None:intergenic 40.0%
ATCTTAAATCCTGCTAAGGC+CGG - chr2_1:9208852-9208871 Msa0193380:CDS 40.0%
GGTCTGGTAATTAAAAGGAC+AGG - chr2_1:9208873-9208892 Msa0193380:CDS 40.0%
!! TTTTATGTTGGCTGTTGTCG+AGG + chr2_1:9208910-9208929 None:intergenic 40.0%
!! AGAAGTACTAGAGCATTTGG+AGG - chr2_1:9209119-9209138 Msa0193380:CDS 40.0%
AAAAACCTGGTAGTTGTGCT+GGG + chr2_1:9209236-9209255 None:intergenic 40.0%
TAAAAACCTGGTAGTTGTGC+TGG + chr2_1:9209237-9209256 None:intergenic 40.0%
CTTGCAATTGCAAGGACTAA+GGG + chr2_1:9209889-9209908 None:intergenic 40.0%
GAAAATTACACACTCTAGGC+TGG + chr2_1:9210024-9210043 None:intergenic 40.0%
! GCCTAGAGTGTGTAATTTTC+AGG - chr2_1:9210024-9210043 Msa0193380:intron 40.0%
GCCTGAAAATTACACACTCT+AGG + chr2_1:9210028-9210047 None:intergenic 40.0%
TGTAACACACTTCAACGAGT+TGG + chr2_1:9210066-9210085 None:intergenic 40.0%
GACCACCAAACTCTAAATAG+GGG - chr2_1:9210120-9210139 Msa0193380:intron 40.0%
!!! ATAGGGGCATCCTATTTTGA+TGG - chr2_1:9210136-9210155 Msa0193380:intron 40.0%
!!! TAGGGGCATCCTATTTTGAT+GGG - chr2_1:9210137-9210156 Msa0193380:intron 40.0%
GAAAAAGCCCCCATCAAAAT+AGG + chr2_1:9210149-9210168 None:intergenic 40.0%
TGTTGGGATGTTTACACTCT+TGG - chr2_1:9210357-9210376 Msa0193380:intron 40.0%
! GCTAACTCCTGCAACATTTT+AGG + chr2_1:9210590-9210609 None:intergenic 40.0%
! CCTGTTGTGTATGCTTTTGA+AGG + chr2_1:9210646-9210665 None:intergenic 40.0%
! CCTTCAAAAGCATACACAAC+AGG - chr2_1:9210643-9210662 Msa0193380:CDS 40.0%
AAGCATACACAACAGGAACA+AGG - chr2_1:9210650-9210669 Msa0193380:CDS 40.0%
AAGGTTCACACTGATGAAGA+AGG - chr2_1:9210682-9210701 Msa0193380:CDS 40.0%
GAAACAAGATGGCACAAAAC+TGG - chr2_1:9210709-9210728 Msa0193380:CDS 40.0%
AAATCCCTTCACAACACCAT+TGG + chr2_1:9210755-9210774 None:intergenic 40.0%
GAAAACCAGAGAAGACTAAC+TGG - chr2_1:9210815-9210834 Msa0193380:intron 40.0%
GTGATGCATCAATACCATCT+TGG - chr2_1:9210838-9210857 Msa0193380:intron 40.0%
TCCACAAGAGCTACATTGTT+GGG + chr2_1:9211018-9211037 None:intergenic 40.0%
TTCCACAAGAGCTACATTGT+TGG + chr2_1:9211019-9211038 None:intergenic 40.0%
TATGGGATTGGAATGAAGGA+AGG - chr2_1:9211272-9211291 Msa0193380:intron 40.0%
CAATATTATGGCCGCATGAG+GGG + chr2_1:9208777-9208796 None:intergenic 45.0%
AGGCCGGTCTGGTAATTAAA+AGG - chr2_1:9208868-9208887 Msa0193380:CDS 45.0%
GTCGAATCTCTACGACTCTA+TGG - chr2_1:9208934-9208953 Msa0193380:CDS 45.0%
GGGTGGAGTTAATGAATTGC+CGG - chr2_1:9209059-9209078 Msa0193380:CDS 45.0%
GGTGGAGTTAATGAATTGCC+GGG - chr2_1:9209060-9209079 Msa0193380:CDS 45.0%
GTGGAGTTAATGAATTGCCG+GGG - chr2_1:9209061-9209080 Msa0193380:CDS 45.0%
GAGTTCATACCAACGCTTCA+AGG - chr2_1:9209186-9209205 Msa0193380:intron 45.0%
CCATTATCTCCTTGAAGCGT+TGG + chr2_1:9209198-9209217 None:intergenic 45.0%
CCAACGCTTCAAGGAGATAA+TGG - chr2_1:9209195-9209214 Msa0193380:intron 45.0%
AGAGACGATCTTGTTCTGCA+CGG - chr2_1:9209340-9209359 Msa0193380:intron 45.0%
! AATTTGATGCATGCGGACTG+CGG + chr2_1:9209368-9209387 None:intergenic 45.0%
GCTTGCAATTGCAAGGACTA+AGG + chr2_1:9209890-9209909 None:intergenic 45.0%
! TGCCCCTATTTAGAGTTTGG+TGG + chr2_1:9210125-9210144 None:intergenic 45.0%
! GGATGCCCCTATTTAGAGTT+TGG + chr2_1:9210128-9210147 None:intergenic 45.0%
!!! AGGGGCATCCTATTTTGATG+GGG - chr2_1:9210138-9210157 Msa0193380:intron 45.0%
GTTGCAGGAGTTAGCAAAGA+TGG - chr2_1:9210595-9210614 Msa0193380:CDS 45.0%
!! ATCACCCAGTTAGTCTTCTC+TGG + chr2_1:9210823-9210842 None:intergenic 45.0%
GGGCTGCACTGTTATTATCA+TGG + chr2_1:9210996-9211015 None:intergenic 45.0%
CACAAGAGCTACATTGTTGG+GGG + chr2_1:9211016-9211035 None:intergenic 45.0%
CCACAAGAGCTACATTGTTG+GGG + chr2_1:9211017-9211036 None:intergenic 45.0%
!!! AATAGATTTTTTTAATAAAA+TGG - chr2_1:9209763-9209782 Msa0193380:intron 5.0%
! AAGGAAAAGTGGGAGCACAC+AGG - chr2_1:9208487-9208506 Msa0193380:three_prime_UTR 50.0%
ACCATTGAATGCCCCTCATG+CGG - chr2_1:9208763-9208782 Msa0193380:CDS 50.0%
GGGTCAAATTTCACTCCAGC+TGG + chr2_1:9209090-9209109 None:intergenic 50.0%
!!! GGGGCATCCTATTTTGATGG+GGG - chr2_1:9210139-9210158 Msa0193380:intron 50.0%
CATGTTGTCTAGGCTGTGTC+TGG + chr2_1:9210915-9210934 None:intergenic 50.0%
CAGACACAGCCTAGACAACA+TGG - chr2_1:9210913-9210932 Msa0193380:intron 50.0%
CCCCAACAATGTAGCTCTTG+TGG - chr2_1:9211014-9211033 Msa0193380:CDS 50.0%
AAATCCTGCTAAGGCCGGTC+TGG - chr2_1:9208857-9208876 Msa0193380:CDS 55.0%
ATTACCAGACCGGCCTTAGC+AGG + chr2_1:9208864-9208883 None:intergenic 55.0%
TTCACTCCAGCTGGTAACCC+CGG + chr2_1:9209081-9209100 None:intergenic 55.0%
ACACACCCAGCACAACTACC+AGG - chr2_1:9209228-9209247 Msa0193380:intron 55.0%
!! GCCGCATGAGGGGCATTCAA+TGG + chr2_1:9208767-9208786 None:intergenic 60.0%
GAATTGCCGGGGTTACCAGC+TGG - chr2_1:9209072-9209091 Msa0193380:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 9208442 9211363 9208442 ID=Msa0193380;Name=Msa0193380
chr2_1 mRNA 9208442 9211363 9208442 ID=Msa0193380-mRNA-1;Parent=Msa0193380;Name=Msa0193380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|0.66|0.5|4|160|307
chr2_1 exon 9208442 9209203 9208442 ID=Msa0193380-mRNA-1:exon:4269;Parent=Msa0193380-mRNA-1
chr2_1 exon 9210556 9210745 9210556 ID=Msa0193380-mRNA-1:exon:4268;Parent=Msa0193380-mRNA-1
chr2_1 exon 9210995 9211156 9210995 ID=Msa0193380-mRNA-1:exon:4267;Parent=Msa0193380-mRNA-1
chr2_1 exon 9211297 9211363 9211297 ID=Msa0193380-mRNA-1:exon:4266;Parent=Msa0193380-mRNA-1
chr2_1 five_prime_UTR 9211297 9211363 9211297 ID=Msa0193380-mRNA-1:five_prime_utr;Parent=Msa0193380-mRNA-1
chr2_1 five_prime_UTR 9211127 9211156 9211127 ID=Msa0193380-mRNA-1:five_prime_utr;Parent=Msa0193380-mRNA-1
chr2_1 CDS 9210995 9211126 9210995 ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1
chr2_1 CDS 9210556 9210745 9210556 ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1
chr2_1 CDS 9208602 9209203 9208602 ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1
chr2_1 three_prime_UTR 9208442 9208601 9208442 ID=Msa0193380-mRNA-1:three_prime_utr;Parent=Msa0193380-mRNA-1
Gene Sequence

>Msa0193380

ATGGCATGGTGCAATGATAAAGATAACAACAACTCTGATGTCACTAATAACATAAAGCTCAATGAAGAAATTGATCAAAATCAAACCATTGAATGCCCCTCATGCGGCCATAATATTGAAGTAAAAAATCAGGGTGGAGTTAATGAATTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGATGTAGAAGTACTAGAGCATTTGGAGGCAAAAGTGATGTCTGATGTTCGCAAGATTCATCCACTTATTGATGAGTTCATACCAACGCTTCAAGGAGATAATGGAATTTGTTATACACACCCAGCACAACTACCAGGAGTTAGCAAAGATGGTCAAATTCGCCACTTTTTTCATAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAATTGAAACAAGATGGCACAAAACTGGGAAAACTAGAGCAATTTTTTCCAATGGTGTTGTGAAGGGATTTAAGAAGATACTTGTACTCTACACCAACTATTGCAAAGAAGGAAAACCAGAGAAGACTAACTGGGTGATGCATCAATACCATCTTGGTATGAATGAAGAAGAAAGAGATGGAGAATTTGTTGCTTCAAAGATCTTCTACCAGACACAGCCTAGACAACATGGTAATTCCATTAACAACGTAAAAGATTCGTATGAAAAAATAATCGACAAAGGAAGTGGCCATGATAATAACAGTGCAGCCCCCAACAATGTAGCTCTTGTGGAATGCTACAATGCTTGTTATACAAATTATGACCATATGCATGTTGGTCATAGTAGGGAAAGCACTCCACAACTGATTATACCAAACATGTCTGTTCAAAGTGATGGAACTATTATTCGCTTATCAATGGATCATGCAAACAAAGTAAGAGTACTGGAGAGAAAGTAA

Protein sequence

>Msa0193380

MAWCNDKDNNNSDVTNNIKLNEEIDQNQTIECPSCGHNIEVKNQGGVNELPGLPAGVKFDPNDVEVLEHLEAKVMSDVRKIHPLIDEFIPTLQGDNGICYTHPAQLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGIETRWHKTGKTRAIFSNGVVKGFKKILVLYTNYCKEGKPEKTNWVMHQYHLGMNEEERDGEFVASKIFYQTQPRQHGNSINNVKDSYEKIIDKGSGHDNNSAAPNNVALVECYNACYTNYDHMHVGHSRESTPQLIIPNMSVQSDGTIIRLSMDHANKVRVLERK*