Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193380 | XP_003593656.1 | 93.831 | 308 | 18 | 1 | 1 | 307 | 1 | 308 | 0.0 | 607 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193380 | sp|O49459|NAC73_ARATH | 64.192 | 229 | 75 | 3 | 1 | 222 | 1 | 229 | 1.70e-105 | 313 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193380 | A2Q521 | 93.831 | 308 | 18 | 1 | 1 | 307 | 1 | 308 | 0.0 | 607 |
Gene ID | Type | Classification |
---|---|---|
Msa0193380 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193380 | MtrunA17_Chr2g0282871 | 93.831 | 308 | 18 | 1 | 1 | 307 | 1 | 308 | 0.0 | 607 |
Msa0193380 | MtrunA17_Chr4g0046431 | 62.462 | 325 | 86 | 9 | 1 | 301 | 1 | 313 | 1.29e-137 | 392 |
Msa0193380 | MtrunA17_Chr8g0367761 | 69.507 | 223 | 53 | 3 | 1 | 208 | 1 | 223 | 8.86e-114 | 329 |
Msa0193380 | MtrunA17_Chr4g0040541 | 60.662 | 272 | 100 | 6 | 12 | 278 | 5 | 274 | 2.39e-110 | 321 |
Msa0193380 | MtrunA17_Chr2g0324961 | 58.219 | 292 | 108 | 6 | 1 | 289 | 1 | 281 | 1.19e-105 | 309 |
Msa0193380 | MtrunA17_Chr8g0389661 | 61.233 | 227 | 74 | 5 | 8 | 224 | 3 | 225 | 7.88e-88 | 271 |
Msa0193380 | MtrunA17_Chr1g0198751 | 50.000 | 248 | 118 | 4 | 2 | 246 | 7 | 251 | 1.66e-73 | 234 |
Msa0193380 | MtrunA17_Chr5g0422431 | 58.763 | 194 | 77 | 2 | 27 | 220 | 34 | 224 | 1.72e-73 | 233 |
Msa0193380 | MtrunA17_Chr7g0227071 | 56.216 | 185 | 74 | 3 | 31 | 212 | 35 | 215 | 8.10e-67 | 217 |
Msa0193380 | MtrunA17_Chr1g0198741 | 51.969 | 127 | 60 | 1 | 108 | 233 | 7 | 133 | 1.58e-34 | 127 |
Msa0193380 | MtrunA17_Chr6g0484441 | 32.317 | 164 | 92 | 6 | 53 | 213 | 5 | 152 | 3.04e-15 | 75.1 |
Msa0193380 | MtrunA17_Chr7g0217711 | 32.075 | 159 | 91 | 4 | 36 | 193 | 2 | 144 | 9.99e-15 | 71.2 |
Msa0193380 | MtrunA17_Chr7g0217721 | 30.457 | 197 | 120 | 4 | 36 | 231 | 2 | 182 | 1.00e-14 | 73.9 |
Msa0193380 | MtrunA17_Chr4g0060931 | 34.507 | 142 | 76 | 5 | 53 | 193 | 17 | 142 | 2.09e-13 | 70.1 |
Msa0193380 | MtrunA17_Chr7g0253011 | 31.111 | 180 | 93 | 9 | 46 | 212 | 10 | 171 | 3.03e-13 | 69.7 |
Msa0193380 | MtrunA17_Chr6g0461661 | 34.104 | 173 | 77 | 11 | 53 | 210 | 18 | 168 | 5.31e-13 | 68.9 |
Msa0193380 | MtrunA17_Chr3g0091921 | 33.803 | 142 | 77 | 5 | 53 | 193 | 16 | 141 | 5.74e-13 | 68.2 |
Msa0193380 | MtrunA17_Chr3g0139331 | 31.429 | 175 | 97 | 7 | 41 | 210 | 1 | 157 | 6.78e-13 | 68.2 |
Msa0193380 | MtrunA17_Chr7g0214071 | 33.333 | 147 | 70 | 8 | 53 | 193 | 15 | 139 | 2.55e-12 | 65.9 |
Msa0193380 | MtrunA17_Chr5g0398971 | 25.792 | 221 | 136 | 8 | 47 | 259 | 1 | 201 | 8.65e-12 | 65.1 |
Msa0193380 | MtrunA17_Chr1g0183741 | 29.101 | 189 | 105 | 8 | 52 | 233 | 9 | 175 | 1.00e-11 | 64.3 |
Msa0193380 | MtrunA17_Chr8g0345701 | 33.974 | 156 | 74 | 8 | 52 | 192 | 6 | 147 | 1.34e-11 | 62.4 |
Msa0193380 | MtrunA17_Chr2g0316971 | 32.738 | 168 | 86 | 9 | 53 | 210 | 23 | 173 | 1.86e-11 | 64.3 |
Msa0193380 | MtrunA17_Chr8g0385991 | 32.000 | 150 | 79 | 8 | 48 | 193 | 9 | 139 | 1.90e-11 | 62.8 |
Msa0193380 | MtrunA17_Chr7g0261411 | 29.448 | 163 | 96 | 6 | 52 | 211 | 9 | 155 | 9.29e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0193380 | AT4G28500.1 | 64.192 | 229 | 75 | 3 | 1 | 222 | 1 | 229 | 1.73e-106 | 313 |
Msa0193380 | AT1G28470.1 | 56.537 | 283 | 91 | 6 | 1 | 252 | 1 | 282 | 2.83e-105 | 310 |
Msa0193380 | AT4G29230.3 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 2.54e-91 | 278 |
Msa0193380 | AT4G29230.1 | 61.883 | 223 | 70 | 3 | 6 | 217 | 2 | 220 | 1.17e-90 | 279 |
Msa0193380 | AT4G29230.2 | 60.987 | 223 | 71 | 3 | 6 | 217 | 2 | 219 | 1.43e-89 | 276 |
Msa0193380 | AT5G56620.2 | 62.944 | 197 | 59 | 4 | 32 | 217 | 25 | 218 | 1.29e-81 | 253 |
Msa0193380 | AT5G56620.3 | 62.944 | 197 | 59 | 4 | 32 | 217 | 25 | 218 | 1.69e-81 | 253 |
Msa0193380 | AT5G56620.1 | 60.476 | 210 | 69 | 4 | 19 | 217 | 12 | 218 | 2.29e-81 | 251 |
Msa0193380 | AT1G25580.1 | 56.545 | 191 | 74 | 4 | 27 | 217 | 34 | 215 | 5.17e-69 | 221 |
Msa0193380 | AT5G14490.2 | 49.756 | 205 | 98 | 4 | 25 | 228 | 29 | 229 | 1.61e-56 | 184 |
Msa0193380 | AT5G14490.1 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 4.39e-56 | 185 |
Msa0193380 | AT5G14490.4 | 50.500 | 200 | 94 | 4 | 30 | 228 | 34 | 229 | 4.71e-56 | 185 |
Msa0193380 | AT5G14490.3 | 50.500 | 200 | 94 | 4 | 30 | 228 | 37 | 232 | 6.21e-56 | 185 |
Msa0193380 | AT3G01600.1 | 49.462 | 186 | 90 | 3 | 30 | 214 | 34 | 216 | 1.55e-50 | 171 |
Msa0193380 | AT3G04060.1 | 32.609 | 184 | 98 | 7 | 41 | 215 | 8 | 174 | 4.33e-19 | 86.7 |
Msa0193380 | AT5G18270.2 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 2.76e-16 | 78.6 |
Msa0193380 | AT5G18270.1 | 33.514 | 185 | 94 | 10 | 41 | 215 | 10 | 175 | 4.74e-16 | 77.8 |
Msa0193380 | AT3G18400.1 | 33.803 | 142 | 77 | 5 | 53 | 193 | 5 | 130 | 1.00e-14 | 73.9 |
Msa0193380 | AT1G33060.1 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 1.05e-13 | 72.0 |
Msa0193380 | AT1G33060.2 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 1.07e-13 | 72.0 |
Msa0193380 | AT4G35580.1 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 6.03e-13 | 69.3 |
Msa0193380 | AT4G35580.2 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 7.30e-13 | 69.3 |
Msa0193380 | AT4G35580.3 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 7.36e-13 | 69.3 |
Msa0193380 | AT2G24430.2 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.75e-12 | 66.6 |
Msa0193380 | AT2G24430.1 | 29.586 | 169 | 97 | 6 | 52 | 214 | 15 | 167 | 2.75e-12 | 66.6 |
Msa0193380 | AT1G76420.1 | 29.279 | 222 | 128 | 11 | 52 | 265 | 21 | 221 | 1.58e-11 | 64.7 |
Msa0193380 | AT1G01720.1 | 30.464 | 151 | 83 | 6 | 47 | 194 | 1 | 132 | 1.97e-11 | 63.9 |
Msa0193380 | AT3G29035.1 | 32.867 | 143 | 77 | 5 | 53 | 193 | 24 | 149 | 2.71e-11 | 63.9 |
Msa0193380 | AT2G33480.2 | 29.412 | 187 | 98 | 10 | 41 | 221 | 7 | 165 | 5.38e-11 | 62.4 |
Msa0193380 | AT2G33480.1 | 29.101 | 189 | 98 | 10 | 41 | 221 | 7 | 167 | 6.32e-11 | 62.4 |
Find 77 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTTAACCATTTACATTTA+TGG | 0.087289 | 2_1:-9208529 | Msa0193380:three_prime_UTR |
ATTCCATATATTTGGAATTT+TGG | 0.093579 | 2_1:-9208475 | Msa0193380:three_prime_UTR |
GTTGGCTTATTCCATATATT+TGG | 0.132174 | 2_1:-9208483 | Msa0193380:three_prime_UTR |
TACTGGAGAGAAAGTAAAAT+TGG | 0.236953 | 2_1:-9208596 | Msa0193380:exon |
CATCCAAAATTCCAAATATA+TGG | 0.268465 | 2_1:+9208472 | None:intergenic |
TCCAATCCCATAAATGTAAA+TGG | 0.274697 | 2_1:+9208522 | None:intergenic |
AGTTAACCATTTACATTTAT+GGG | 0.277883 | 2_1:-9208528 | Msa0193380:three_prime_UTR |
GAAACAAGATGGCACAAAAC+TGG | 0.293534 | 2_1:-9209074 | Msa0193380:CDS |
CTTAATCTTTCCTACAATAC+TGG | 0.298632 | 2_1:+9211131 | None:intergenic |
GTAAAATTGGAAGAGCTTCT+TGG | 0.309911 | 2_1:-9208583 | Msa0193380:exon |
TCTAGTACTTCTACATCATT+TGG | 0.314489 | 2_1:+9210675 | None:intergenic |
TCCACAAGAGCTACATTGTT+GGG | 0.338920 | 2_1:+9208768 | None:intergenic |
ACCATTTACATTTATGGGAT+TGG | 0.340052 | 2_1:-9208523 | Msa0193380:three_prime_UTR |
CCAACGCTTCAAGGAGATAA+TGG | 0.355602 | 2_1:-9210588 | Msa0193380:CDS |
GAGCAATAGCAAACACAGTT+TGG | 0.360154 | 2_1:-9211354 | None:intergenic |
TTATTAGGGACCAGTATTGT+AGG | 0.377024 | 2_1:-9211141 | Msa0193380:intron |
ATCACCCAGTTAGTCTTCTC+TGG | 0.385881 | 2_1:+9208963 | None:intergenic |
TGTAGAAGTACTAGAGCATT+TGG | 0.390413 | 2_1:-9210667 | Msa0193380:CDS |
CATTTATGGGATTGGAATGA+AGG | 0.400089 | 2_1:-9208515 | Msa0193380:three_prime_UTR |
GAAAACCAGAGAAGACTAAC+TGG | 0.406375 | 2_1:-9208968 | Msa0193380:CDS |
AACTATTATTCGCTTATCAA+TGG | 0.414728 | 2_1:-9208640 | Msa0193380:CDS |
GTAGGAAAGATTAAGAACTA+TGG | 0.414762 | 2_1:-9211123 | Msa0193380:exon |
GGGTGGAGTTAATGAATTGC+CGG | 0.417191 | 2_1:-9210724 | Msa0193380:CDS |
CATGTTGTCTAGGCTGTGTC+TGG | 0.424066 | 2_1:+9208871 | None:intergenic |
TCACTTTGAACAGACATGTT+TGG | 0.426034 | 2_1:+9208666 | None:intergenic |
AGCAATAGCAAACACAGTTT+GGG | 0.447566 | 2_1:-9211353 | None:intergenic |
CTAGTACTTCTACATCATTT+GGG | 0.458512 | 2_1:+9210676 | None:intergenic |
GAGTTCATACCAACGCTTCA+AGG | 0.459148 | 2_1:-9210597 | Msa0193380:CDS |
CCATTATCTCCTTGAAGCGT+TGG | 0.461132 | 2_1:+9210588 | None:intergenic |
GGGTCAAATTTCACTCCAGC+TGG | 0.465906 | 2_1:+9210696 | None:intergenic |
GGGCTGCACTGTTATTATCA+TGG | 0.468166 | 2_1:+9208790 | None:intergenic |
CTTCTTCATTCATACCAAGA+TGG | 0.471328 | 2_1:+9208931 | None:intergenic |
ATATGCATGTTGGTCATAGT+AGG | 0.471621 | 2_1:-9208713 | Msa0193380:CDS |
GCCGCATGAGGGGCATTCAA+TGG | 0.476343 | 2_1:+9211019 | None:intergenic |
TACACCAACTATTGCAAAGA+AGG | 0.482059 | 2_1:-9208990 | Msa0193380:CDS |
CCTTCAAAAGCATACACAAC+AGG | 0.484981 | 2_1:-9209140 | Msa0193380:CDS |
TACTATGACCAACATGCATA+TGG | 0.492828 | 2_1:+9208715 | None:intergenic |
TGCAAACAAAGTAAGAGTAC+TGG | 0.494119 | 2_1:-9208613 | Msa0193380:CDS |
GAATGAAGGAAGGAATAAGT+TGG | 0.496812 | 2_1:-9208501 | Msa0193380:three_prime_UTR |
GAATTGCCGGGGTTACCAGC+TGG | 0.498475 | 2_1:-9210711 | Msa0193380:CDS |
GGTGGAGTTAATGAATTGCC+GGG | 0.501114 | 2_1:-9210723 | Msa0193380:CDS |
AAAATAATCGACAAAGGAAG+TGG | 0.506740 | 2_1:-9208813 | Msa0193380:CDS |
TTCAATATTATGGCCGCATG+AGG | 0.506854 | 2_1:+9211007 | None:intergenic |
AAATCCCTTCACAACACCAT+TGG | 0.513981 | 2_1:+9209031 | None:intergenic |
AACATGTCTGTTCAAAGTGA+TGG | 0.516868 | 2_1:-9208663 | Msa0193380:CDS |
TTCCACAAGAGCTACATTGT+TGG | 0.516933 | 2_1:+9208767 | None:intergenic |
TCAATATTATGGCCGCATGA+GGG | 0.518397 | 2_1:+9211008 | None:intergenic |
GTTGCAGGAGTTAGCAAAGA+TGG | 0.520564 | 2_1:-9209188 | Msa0193380:intron |
ATGGAATTACCATGTTGTCT+AGG | 0.524147 | 2_1:+9208861 | None:intergenic |
TATGGGATTGGAATGAAGGA+AGG | 0.524998 | 2_1:-9208511 | Msa0193380:three_prime_UTR |
CCCCAACAATGTAGCTCTTG+TGG | 0.528333 | 2_1:-9208769 | Msa0193380:CDS |
TCATTGAATCGAAGGAAAAG+TGG | 0.534296 | 2_1:-9211307 | Msa0193380:five_prime_UTR |
AAGAAGGAATTGAAACAAGA+TGG | 0.540463 | 2_1:-9209085 | Msa0193380:CDS |
GTGATGCATCAATACCATCT+TGG | 0.542364 | 2_1:-9208945 | Msa0193380:CDS |
ATGAATGAAGAAGAAAGAGA+TGG | 0.549873 | 2_1:-9208921 | Msa0193380:CDS |
AAACAAGATGGCACAAAACT+GGG | 0.551473 | 2_1:-9209073 | Msa0193380:CDS |
TTCACTCCAGCTGGTAACCC+CGG | 0.559582 | 2_1:+9210705 | None:intergenic |
AAGGTTCACACTGATGAAGA+AGG | 0.564034 | 2_1:-9209101 | Msa0193380:CDS |
CAATATTATGGCCGCATGAG+GGG | 0.567135 | 2_1:+9211009 | None:intergenic |
AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 2_1:-9209120 | Msa0193380:CDS |
ATGTTTGGTATAATCAGTTG+TGG | 0.571913 | 2_1:+9208681 | None:intergenic |
TATGCATGTTGGTCATAGTA+GGG | 0.574413 | 2_1:-9208712 | Msa0193380:CDS |
CCACAAGAGCTACATTGTTG+GGG | 0.578626 | 2_1:+9208769 | None:intergenic |
AAGTTCAATCATTGAATCGA+AGG | 0.586463 | 2_1:-9211315 | Msa0193380:five_prime_UTR |
ACACACCCAGCACAACTACC+AGG | 0.587266 | 2_1:-9210555 | Msa0193380:intron |
GGTATGAACTCATCAATAAG+TGG | 0.587548 | 2_1:+9210609 | None:intergenic |
CATTGAATCGAAGGAAAAGT+GGG | 0.589078 | 2_1:-9211306 | Msa0193380:five_prime_UTR |
CAGACACAGCCTAGACAACA+TGG | 0.593480 | 2_1:-9208870 | Msa0193380:CDS |
AATTATGACCATATGCATGT+TGG | 0.599378 | 2_1:-9208723 | Msa0193380:CDS |
ACCATTGAATGCCCCTCATG+CGG | 0.616642 | 2_1:-9211020 | Msa0193380:CDS |
AGAAGTACTAGAGCATTTGG+AGG | 0.620573 | 2_1:-9210664 | Msa0193380:CDS |
AAAGATTAAGAACTATGGCA+TGG | 0.622011 | 2_1:-9211118 | Msa0193380:exon |
AAGCATACACAACAGGAACA+AGG | 0.626885 | 2_1:-9209133 | Msa0193380:CDS |
CACAAGAGCTACATTGTTGG+GGG | 0.638019 | 2_1:+9208770 | None:intergenic |
AAGGAAAAGTGGGAGCACAC+AGG | 0.672003 | 2_1:-9211296 | Msa0193380:intron |
GTGGAGTTAATGAATTGCCG+GGG | 0.680068 | 2_1:-9210722 | Msa0193380:CDS |
AAAACCAGAGAAGACTAACT+GGG | 0.696934 | 2_1:-9208967 | Msa0193380:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAAATAGATTTTAATTATA+AGG | - | chr2_1:9209430-9209449 | Msa0193380:intron | 10.0% |
!!! | TTTTTAAAAATGGATTTTTA+TGG | + | chr2_1:9209646-9209665 | None:intergenic | 10.0% |
!!! | AAAAAAGTGATTTTTTTTTA+AGG | - | chr2_1:9209821-9209840 | Msa0193380:intron | 10.0% |
!!! | AAAAAGTGATTTTTTTTTAA+GGG | - | chr2_1:9209822-9209841 | Msa0193380:intron | 10.0% |
!! | TTATCATAAGTTAATAAAAA+GGG | + | chr2_1:9209953-9209972 | None:intergenic | 10.0% |
!! | ATTATCATAAGTTAATAAAA+AGG | + | chr2_1:9209954-9209973 | None:intergenic | 10.0% |
!! | ATGAAGGAAAAAAAAAAAAA+GGG | + | chr2_1:9208572-9208591 | None:intergenic | 15.0% |
!! | TATGAAGGAAAAAAAAAAAA+AGG | + | chr2_1:9208573-9208592 | None:intergenic | 15.0% |
!!! | CATATTTTGCTTTATTATTA+GGG | - | chr2_1:9208628-9208647 | Msa0193380:CDS | 15.0% |
!!! | GATTTTTTACTTCAATATTA+TGG | + | chr2_1:9208789-9208808 | None:intergenic | 15.0% |
!! | TAATATTGAAGTAAAAAATC+AGG | - | chr2_1:9208789-9208808 | Msa0193380:CDS | 15.0% |
!! | TTAAATTAAATGTAAAAACC+TGG | + | chr2_1:9209249-9209268 | None:intergenic | 15.0% |
!! | ATTAACATAATTTAGAGATT+TGG | - | chr2_1:9209280-9209299 | Msa0193380:intron | 15.0% |
!!! | AATAGATTTTAATTATAAGG+CGG | - | chr2_1:9209433-9209452 | Msa0193380:intron | 15.0% |
!!! | GAACTCATTTTTTTTAAAAA+TGG | + | chr2_1:9209656-9209675 | None:intergenic | 15.0% |
!! | AAAGAAAATTATTTGTCAAT+CGG | - | chr2_1:9209910-9209929 | Msa0193380:intron | 15.0% |
!!! | TAATTATTTTTTGTGAATTG+TGG | - | chr2_1:9209970-9209989 | Msa0193380:intron | 15.0% |
!!! | CATTAACTTTCTTTTTATTA+TGG | + | chr2_1:9210000-9210019 | None:intergenic | 15.0% |
!! | ATATAGATGGAAAAATATGA+AGG | + | chr2_1:9208588-9208607 | None:intergenic | 20.0% |
!! | TAAAGCAAAATATGGAAAAA+GGG | + | chr2_1:9208622-9208641 | None:intergenic | 20.0% |
!! | ATAAAGCAAAATATGGAAAA+AGG | + | chr2_1:9208623-9208642 | None:intergenic | 20.0% |
!! | CCTAATAATAAAGCAAAATA+TGG | + | chr2_1:9208630-9208649 | None:intergenic | 20.0% |
!!! | CCATATTTTGCTTTATTATT+AGG | - | chr2_1:9208627-9208646 | Msa0193380:CDS | 20.0% |
!! | TAAACTAAAGGAGTTAATAT+TGG | + | chr2_1:9209002-9209021 | None:intergenic | 20.0% |
!! | CACACAAATTAATAAACTAA+AGG | + | chr2_1:9209014-9209033 | None:intergenic | 20.0% |
!!! | TTTGATGATTTTTGATACAT+AGG | - | chr2_1:9209038-9209057 | Msa0193380:CDS | 20.0% |
!!! | TTGATGATTTTTGATACATA+GGG | - | chr2_1:9209039-9209058 | Msa0193380:CDS | 20.0% |
!! | AAATTTATGAGATCTAAATG+TGG | + | chr2_1:9209490-9209509 | None:intergenic | 20.0% |
!!! | TTTTTTTAAAGCTGAAACAA+AGG | + | chr2_1:9209539-9209558 | None:intergenic | 20.0% |
!!! | ATCTATTTTTTTCAACTACA+AGG | + | chr2_1:9209700-9209719 | None:intergenic | 20.0% |
!!! | TCATTTTTAAGTGTTTGTTT+AGG | + | chr2_1:9209802-9209821 | None:intergenic | 20.0% |
!!! | TGAAAAAAATCTGAAACAAA+CGG | - | chr2_1:9209862-9209881 | Msa0193380:intron | 20.0% |
!! | AAGAAAATTATTTGTCAATC+GGG | - | chr2_1:9209911-9209930 | Msa0193380:intron | 20.0% |
!!! | TAATTTGTTACTGTAACATT+AGG | - | chr2_1:9210256-9210275 | Msa0193380:intron | 20.0% |
!!! | AAAAATTGTTCCTTAAGTTT+TGG | - | chr2_1:9210307-9210326 | Msa0193380:intron | 20.0% |
!!! | ACCTTTTTTTTTTTTTGTGT+TGG | - | chr2_1:9210340-9210359 | Msa0193380:intron | 20.0% |
!!! | CCTTTTTTTTTTTTTGTGTT+GGG | - | chr2_1:9210341-9210360 | Msa0193380:intron | 20.0% |
!! | GTGATACATTATTAATCAAA+AGG | + | chr2_1:9210412-9210431 | None:intergenic | 20.0% |
!! | TATGAAAAAATAATCGACAA+AGG | - | chr2_1:9210964-9210983 | Msa0193380:intron | 20.0% |
!! | AGTTAACCATTTACATTTAT+GGG | - | chr2_1:9211255-9211274 | Msa0193380:intron | 20.0% |
!!! | ATTCCATATATTTGGAATTT+TGG | - | chr2_1:9211308-9211327 | Msa0193380:five_prime_UTR | 20.0% |
! | GGTGAGAAATTAAATATAGA+TGG | + | chr2_1:9208601-9208620 | None:intergenic | 25.0% |
! | AAAAATCAGGTACTAATCAA+TGG | - | chr2_1:9208802-9208821 | Msa0193380:CDS | 25.0% |
! | CATTGCATGTGTTAATTATT+GGG | - | chr2_1:9209317-9209336 | Msa0193380:intron | 25.0% |
!! | GTTAATTAATTTGATGCATG+CGG | + | chr2_1:9209375-9209394 | None:intergenic | 25.0% |
! | ATAGAAGTAGTTCTTTACTT+AGG | - | chr2_1:9209510-9209529 | Msa0193380:intron | 25.0% |
!!! | AATGGATTTTTATGGATAGT+AGG | + | chr2_1:9209638-9209657 | None:intergenic | 25.0% |
!! | TCCTAATAGCTTTTCATTTT+AGG | - | chr2_1:9209735-9209754 | Msa0193380:intron | 25.0% |
! | TCCTAAAATGAAAAGCTATT+AGG | + | chr2_1:9209739-9209758 | None:intergenic | 25.0% |
!! | GAAAAAAATCTGAAACAAAC+GGG | - | chr2_1:9209863-9209882 | Msa0193380:intron | 25.0% |
! | AGAAAATTATTTGTCAATCG+GGG | - | chr2_1:9209912-9209931 | Msa0193380:intron | 25.0% |
!!! | TCAAATTGCTATTGATGTTT+TGG | + | chr2_1:9210223-9210242 | None:intergenic | 25.0% |
! | GTTACAGTAACAAATTACTT+AGG | + | chr2_1:9210253-9210272 | None:intergenic | 25.0% |
! | CCCAACACAAAAAAAAAAAA+AGG | + | chr2_1:9210344-9210363 | None:intergenic | 25.0% |
! | GTACCAAAAGAAATAGAATT+GGG | + | chr2_1:9210434-9210453 | None:intergenic | 25.0% |
! | TGTACCAAAAGAAATAGAAT+TGG | + | chr2_1:9210435-9210454 | None:intergenic | 25.0% |
! | ATATGTCAAATTAGAGATGA+AGG | - | chr2_1:9210506-9210525 | Msa0193380:intron | 25.0% |
!!! | GACACTTATTTTAAAAGAGA+CGG | - | chr2_1:9210535-9210554 | Msa0193380:intron | 25.0% |
! | AACTATTATTCGCTTATCAA+TGG | - | chr2_1:9211143-9211162 | Msa0193380:intron | 25.0% |
! | CAGTTAACCATTTACATTTA+TGG | - | chr2_1:9211254-9211273 | Msa0193380:intron | 25.0% |
! | CATCCAAAATTCCAAATATA+TGG | + | chr2_1:9211314-9211333 | None:intergenic | 25.0% |
!! | GGAATTTTGGATGTATTATA+TGG | - | chr2_1:9211321-9211340 | Msa0193380:five_prime_UTR | 25.0% |
!! | ATTTTGGATGTATTATATGG+TGG | - | chr2_1:9211324-9211343 | Msa0193380:five_prime_UTR | 25.0% |
AAGTTCAATCATTGAATCGA+AGG | - | chr2_1:9208468-9208487 | Msa0193380:three_prime_UTR | 30.0% | |
! | TACAGTAGTTTGTATCTTTC+GGG | + | chr2_1:9208543-9208562 | None:intergenic | 30.0% |
! | CTACAGTAGTTTGTATCTTT+CGG | + | chr2_1:9208544-9208563 | None:intergenic | 30.0% |
CTTAATCTTTCCTACAATAC+TGG | + | chr2_1:9208655-9208674 | None:intergenic | 30.0% | |
GTAGGAAAGATTAAGAACTA+TGG | - | chr2_1:9208660-9208679 | Msa0193380:CDS | 30.0% | |
AAAGATTAAGAACTATGGCA+TGG | - | chr2_1:9208665-9208684 | Msa0193380:CDS | 30.0% | |
TTTGATCTTAAATCCTGCTA+AGG | - | chr2_1:9208848-9208867 | Msa0193380:CDS | 30.0% | |
!! | GATTCGACAAAGTTTTATGT+TGG | + | chr2_1:9208922-9208941 | None:intergenic | 30.0% |
! | ATGATTTTTGATACATAGGG+TGG | - | chr2_1:9209042-9209061 | Msa0193380:CDS | 30.0% |
CTAGTACTTCTACATCATTT+GGG | + | chr2_1:9209110-9209129 | None:intergenic | 30.0% | |
TCTAGTACTTCTACATCATT+TGG | + | chr2_1:9209111-9209130 | None:intergenic | 30.0% | |
GCATTGCATGTGTTAATTAT+TGG | - | chr2_1:9209316-9209335 | Msa0193380:intron | 30.0% | |
TGGAGAGAATAAATGTTATG+TGG | + | chr2_1:9209470-9209489 | None:intergenic | 30.0% | |
AAACCAATGAATGCTTGAAT+TGG | - | chr2_1:9210088-9210107 | Msa0193380:intron | 30.0% | |
!! | ACTTGCTTTTCCAAAACTTA+AGG | + | chr2_1:9210320-9210339 | None:intergenic | 30.0% |
!! | TCACCCAATTCTATTTCTTT+TGG | - | chr2_1:9210428-9210447 | Msa0193380:intron | 30.0% |
ATTGTTACCTAAAATGTTGC+AGG | - | chr2_1:9210580-9210599 | Msa0193380:CDS | 30.0% | |
!!! | AAATTCGCCACTTTTTTCAT+AGG | - | chr2_1:9210620-9210639 | Msa0193380:CDS | 30.0% |
AAGAAGGAATTGAAACAAGA+TGG | - | chr2_1:9210698-9210717 | Msa0193380:CDS | 30.0% | |
!!! | ACTAGAGCAATTTTTTCCAA+TGG | - | chr2_1:9210736-9210755 | Msa0193380:intron | 30.0% |
! | TTTTCCTTCTTTGCAATAGT+TGG | + | chr2_1:9210800-9210819 | None:intergenic | 30.0% |
ATGAATGAAGAAGAAAGAGA+TGG | - | chr2_1:9210862-9210881 | Msa0193380:intron | 30.0% | |
! | CGAATCTTTTACGTTGTTAA+TGG | + | chr2_1:9210944-9210963 | None:intergenic | 30.0% |
AAAATAATCGACAAAGGAAG+TGG | - | chr2_1:9210970-9210989 | Msa0193380:intron | 30.0% | |
AATTATGACCATATGCATGT+TGG | - | chr2_1:9211060-9211079 | Msa0193380:CDS | 30.0% | |
ATGTTTGGTATAATCAGTTG+TGG | + | chr2_1:9211105-9211124 | None:intergenic | 30.0% | |
TACTGGAGAGAAAGTAAAAT+TGG | - | chr2_1:9211187-9211206 | Msa0193380:intron | 30.0% | |
ACCATTTACATTTATGGGAT+TGG | - | chr2_1:9211260-9211279 | Msa0193380:intron | 30.0% | |
TCCAATCCCATAAATGTAAA+TGG | + | chr2_1:9211264-9211283 | None:intergenic | 30.0% | |
! | GTTGGCTTATTCCATATATT+TGG | - | chr2_1:9211300-9211319 | Msa0193380:five_prime_UTR | 30.0% |
TCATTGAATCGAAGGAAAAG+TGG | - | chr2_1:9208476-9208495 | Msa0193380:three_prime_UTR | 35.0% | |
CATTGAATCGAAGGAAAAGT+GGG | - | chr2_1:9208477-9208496 | Msa0193380:three_prime_UTR | 35.0% | |
TTATTAGGGACCAGTATTGT+AGG | - | chr2_1:9208642-9208661 | Msa0193380:CDS | 35.0% | |
!! | TGTCCTTTTAATTACCAGAC+CGG | + | chr2_1:9208874-9208893 | None:intergenic | 35.0% |
GTCTGGTAATTAAAAGGACA+GGG | - | chr2_1:9208874-9208893 | Msa0193380:CDS | 35.0% | |
!! | TGTAGAAGTACTAGAGCATT+TGG | - | chr2_1:9209116-9209135 | Msa0193380:CDS | 35.0% |
GGTATGAACTCATCAATAAG+TGG | + | chr2_1:9209177-9209196 | None:intergenic | 35.0% | |
AACACATGCAATGCATCAAA+CGG | + | chr2_1:9209310-9209329 | None:intergenic | 35.0% | |
TTTCTTTGCTTGCAATTGCA+AGG | + | chr2_1:9209897-9209916 | None:intergenic | 35.0% | |
TTGCCAATTCAAGCATTCAT+TGG | + | chr2_1:9210094-9210113 | None:intergenic | 35.0% | |
ATGACCACCAAACTCTAAAT+AGG | - | chr2_1:9210118-9210137 | Msa0193380:intron | 35.0% | |
TGACCACCAAACTCTAAATA+GGG | - | chr2_1:9210119-9210138 | Msa0193380:intron | 35.0% | |
TTGAAGGCCTATGAAAAAAG+TGG | + | chr2_1:9210630-9210649 | None:intergenic | 35.0% | |
AGGAACAAGGAAAAGAAGAA+AGG | - | chr2_1:9210663-9210682 | Msa0193380:CDS | 35.0% | |
AAACAAGATGGCACAAAACT+GGG | - | chr2_1:9210710-9210729 | Msa0193380:CDS | 35.0% | |
!!! | TTTTTCCAATGGTGTTGTGA+AGG | - | chr2_1:9210747-9210766 | Msa0193380:intron | 35.0% |
!!! | TTTTCCAATGGTGTTGTGAA+GGG | - | chr2_1:9210748-9210767 | Msa0193380:intron | 35.0% |
TACACCAACTATTGCAAAGA+AGG | - | chr2_1:9210793-9210812 | Msa0193380:intron | 35.0% | |
AAAACCAGAGAAGACTAACT+GGG | - | chr2_1:9210816-9210835 | Msa0193380:intron | 35.0% | |
CTTCTTCATTCATACCAAGA+TGG | + | chr2_1:9210855-9210874 | None:intergenic | 35.0% | |
ATGGAATTACCATGTTGTCT+AGG | + | chr2_1:9210925-9210944 | None:intergenic | 35.0% | |
TACTATGACCAACATGCATA+TGG | + | chr2_1:9211071-9211090 | None:intergenic | 35.0% | |
ATATGCATGTTGGTCATAGT+AGG | - | chr2_1:9211070-9211089 | Msa0193380:CDS | 35.0% | |
TATGCATGTTGGTCATAGTA+GGG | - | chr2_1:9211071-9211090 | Msa0193380:CDS | 35.0% | |
TCACTTTGAACAGACATGTT+TGG | + | chr2_1:9211120-9211139 | None:intergenic | 35.0% | |
AACATGTCTGTTCAAAGTGA+TGG | - | chr2_1:9211120-9211139 | Msa0193380:exon | 35.0% | |
! | TGCAAACAAAGTAAGAGTAC+TGG | - | chr2_1:9211170-9211189 | Msa0193380:intron | 35.0% |
GTAAAATTGGAAGAGCTTCT+TGG | - | chr2_1:9211200-9211219 | Msa0193380:intron | 35.0% | |
CATTTATGGGATTGGAATGA+AGG | - | chr2_1:9211268-9211287 | Msa0193380:intron | 35.0% | |
GAATGAAGGAAGGAATAAGT+TGG | - | chr2_1:9211282-9211301 | Msa0193380:intron | 35.0% | |
TCAATATTATGGCCGCATGA+GGG | + | chr2_1:9208778-9208797 | None:intergenic | 40.0% | |
TTCAATATTATGGCCGCATG+AGG | + | chr2_1:9208779-9208798 | None:intergenic | 40.0% | |
ATCTTAAATCCTGCTAAGGC+CGG | - | chr2_1:9208852-9208871 | Msa0193380:CDS | 40.0% | |
GGTCTGGTAATTAAAAGGAC+AGG | - | chr2_1:9208873-9208892 | Msa0193380:CDS | 40.0% | |
!! | TTTTATGTTGGCTGTTGTCG+AGG | + | chr2_1:9208910-9208929 | None:intergenic | 40.0% |
!! | AGAAGTACTAGAGCATTTGG+AGG | - | chr2_1:9209119-9209138 | Msa0193380:CDS | 40.0% |
AAAAACCTGGTAGTTGTGCT+GGG | + | chr2_1:9209236-9209255 | None:intergenic | 40.0% | |
TAAAAACCTGGTAGTTGTGC+TGG | + | chr2_1:9209237-9209256 | None:intergenic | 40.0% | |
CTTGCAATTGCAAGGACTAA+GGG | + | chr2_1:9209889-9209908 | None:intergenic | 40.0% | |
GAAAATTACACACTCTAGGC+TGG | + | chr2_1:9210024-9210043 | None:intergenic | 40.0% | |
! | GCCTAGAGTGTGTAATTTTC+AGG | - | chr2_1:9210024-9210043 | Msa0193380:intron | 40.0% |
GCCTGAAAATTACACACTCT+AGG | + | chr2_1:9210028-9210047 | None:intergenic | 40.0% | |
TGTAACACACTTCAACGAGT+TGG | + | chr2_1:9210066-9210085 | None:intergenic | 40.0% | |
GACCACCAAACTCTAAATAG+GGG | - | chr2_1:9210120-9210139 | Msa0193380:intron | 40.0% | |
!!! | ATAGGGGCATCCTATTTTGA+TGG | - | chr2_1:9210136-9210155 | Msa0193380:intron | 40.0% |
!!! | TAGGGGCATCCTATTTTGAT+GGG | - | chr2_1:9210137-9210156 | Msa0193380:intron | 40.0% |
GAAAAAGCCCCCATCAAAAT+AGG | + | chr2_1:9210149-9210168 | None:intergenic | 40.0% | |
TGTTGGGATGTTTACACTCT+TGG | - | chr2_1:9210357-9210376 | Msa0193380:intron | 40.0% | |
! | GCTAACTCCTGCAACATTTT+AGG | + | chr2_1:9210590-9210609 | None:intergenic | 40.0% |
! | CCTGTTGTGTATGCTTTTGA+AGG | + | chr2_1:9210646-9210665 | None:intergenic | 40.0% |
! | CCTTCAAAAGCATACACAAC+AGG | - | chr2_1:9210643-9210662 | Msa0193380:CDS | 40.0% |
AAGCATACACAACAGGAACA+AGG | - | chr2_1:9210650-9210669 | Msa0193380:CDS | 40.0% | |
AAGGTTCACACTGATGAAGA+AGG | - | chr2_1:9210682-9210701 | Msa0193380:CDS | 40.0% | |
GAAACAAGATGGCACAAAAC+TGG | - | chr2_1:9210709-9210728 | Msa0193380:CDS | 40.0% | |
AAATCCCTTCACAACACCAT+TGG | + | chr2_1:9210755-9210774 | None:intergenic | 40.0% | |
GAAAACCAGAGAAGACTAAC+TGG | - | chr2_1:9210815-9210834 | Msa0193380:intron | 40.0% | |
GTGATGCATCAATACCATCT+TGG | - | chr2_1:9210838-9210857 | Msa0193380:intron | 40.0% | |
TCCACAAGAGCTACATTGTT+GGG | + | chr2_1:9211018-9211037 | None:intergenic | 40.0% | |
TTCCACAAGAGCTACATTGT+TGG | + | chr2_1:9211019-9211038 | None:intergenic | 40.0% | |
TATGGGATTGGAATGAAGGA+AGG | - | chr2_1:9211272-9211291 | Msa0193380:intron | 40.0% | |
CAATATTATGGCCGCATGAG+GGG | + | chr2_1:9208777-9208796 | None:intergenic | 45.0% | |
AGGCCGGTCTGGTAATTAAA+AGG | - | chr2_1:9208868-9208887 | Msa0193380:CDS | 45.0% | |
GTCGAATCTCTACGACTCTA+TGG | - | chr2_1:9208934-9208953 | Msa0193380:CDS | 45.0% | |
GGGTGGAGTTAATGAATTGC+CGG | - | chr2_1:9209059-9209078 | Msa0193380:CDS | 45.0% | |
GGTGGAGTTAATGAATTGCC+GGG | - | chr2_1:9209060-9209079 | Msa0193380:CDS | 45.0% | |
GTGGAGTTAATGAATTGCCG+GGG | - | chr2_1:9209061-9209080 | Msa0193380:CDS | 45.0% | |
GAGTTCATACCAACGCTTCA+AGG | - | chr2_1:9209186-9209205 | Msa0193380:intron | 45.0% | |
CCATTATCTCCTTGAAGCGT+TGG | + | chr2_1:9209198-9209217 | None:intergenic | 45.0% | |
CCAACGCTTCAAGGAGATAA+TGG | - | chr2_1:9209195-9209214 | Msa0193380:intron | 45.0% | |
AGAGACGATCTTGTTCTGCA+CGG | - | chr2_1:9209340-9209359 | Msa0193380:intron | 45.0% | |
! | AATTTGATGCATGCGGACTG+CGG | + | chr2_1:9209368-9209387 | None:intergenic | 45.0% |
GCTTGCAATTGCAAGGACTA+AGG | + | chr2_1:9209890-9209909 | None:intergenic | 45.0% | |
! | TGCCCCTATTTAGAGTTTGG+TGG | + | chr2_1:9210125-9210144 | None:intergenic | 45.0% |
! | GGATGCCCCTATTTAGAGTT+TGG | + | chr2_1:9210128-9210147 | None:intergenic | 45.0% |
!!! | AGGGGCATCCTATTTTGATG+GGG | - | chr2_1:9210138-9210157 | Msa0193380:intron | 45.0% |
GTTGCAGGAGTTAGCAAAGA+TGG | - | chr2_1:9210595-9210614 | Msa0193380:CDS | 45.0% | |
!! | ATCACCCAGTTAGTCTTCTC+TGG | + | chr2_1:9210823-9210842 | None:intergenic | 45.0% |
GGGCTGCACTGTTATTATCA+TGG | + | chr2_1:9210996-9211015 | None:intergenic | 45.0% | |
CACAAGAGCTACATTGTTGG+GGG | + | chr2_1:9211016-9211035 | None:intergenic | 45.0% | |
CCACAAGAGCTACATTGTTG+GGG | + | chr2_1:9211017-9211036 | None:intergenic | 45.0% | |
!!! | AATAGATTTTTTTAATAAAA+TGG | - | chr2_1:9209763-9209782 | Msa0193380:intron | 5.0% |
! | AAGGAAAAGTGGGAGCACAC+AGG | - | chr2_1:9208487-9208506 | Msa0193380:three_prime_UTR | 50.0% |
ACCATTGAATGCCCCTCATG+CGG | - | chr2_1:9208763-9208782 | Msa0193380:CDS | 50.0% | |
GGGTCAAATTTCACTCCAGC+TGG | + | chr2_1:9209090-9209109 | None:intergenic | 50.0% | |
!!! | GGGGCATCCTATTTTGATGG+GGG | - | chr2_1:9210139-9210158 | Msa0193380:intron | 50.0% |
CATGTTGTCTAGGCTGTGTC+TGG | + | chr2_1:9210915-9210934 | None:intergenic | 50.0% | |
CAGACACAGCCTAGACAACA+TGG | - | chr2_1:9210913-9210932 | Msa0193380:intron | 50.0% | |
CCCCAACAATGTAGCTCTTG+TGG | - | chr2_1:9211014-9211033 | Msa0193380:CDS | 50.0% | |
AAATCCTGCTAAGGCCGGTC+TGG | - | chr2_1:9208857-9208876 | Msa0193380:CDS | 55.0% | |
ATTACCAGACCGGCCTTAGC+AGG | + | chr2_1:9208864-9208883 | None:intergenic | 55.0% | |
TTCACTCCAGCTGGTAACCC+CGG | + | chr2_1:9209081-9209100 | None:intergenic | 55.0% | |
ACACACCCAGCACAACTACC+AGG | - | chr2_1:9209228-9209247 | Msa0193380:intron | 55.0% | |
!! | GCCGCATGAGGGGCATTCAA+TGG | + | chr2_1:9208767-9208786 | None:intergenic | 60.0% |
GAATTGCCGGGGTTACCAGC+TGG | - | chr2_1:9209072-9209091 | Msa0193380:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 9208442 | 9211363 | 9208442 | ID=Msa0193380;Name=Msa0193380 |
chr2_1 | mRNA | 9208442 | 9211363 | 9208442 | ID=Msa0193380-mRNA-1;Parent=Msa0193380;Name=Msa0193380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|0.66|0.5|4|160|307 |
chr2_1 | exon | 9208442 | 9209203 | 9208442 | ID=Msa0193380-mRNA-1:exon:4269;Parent=Msa0193380-mRNA-1 |
chr2_1 | exon | 9210556 | 9210745 | 9210556 | ID=Msa0193380-mRNA-1:exon:4268;Parent=Msa0193380-mRNA-1 |
chr2_1 | exon | 9210995 | 9211156 | 9210995 | ID=Msa0193380-mRNA-1:exon:4267;Parent=Msa0193380-mRNA-1 |
chr2_1 | exon | 9211297 | 9211363 | 9211297 | ID=Msa0193380-mRNA-1:exon:4266;Parent=Msa0193380-mRNA-1 |
chr2_1 | five_prime_UTR | 9211297 | 9211363 | 9211297 | ID=Msa0193380-mRNA-1:five_prime_utr;Parent=Msa0193380-mRNA-1 |
chr2_1 | five_prime_UTR | 9211127 | 9211156 | 9211127 | ID=Msa0193380-mRNA-1:five_prime_utr;Parent=Msa0193380-mRNA-1 |
chr2_1 | CDS | 9210995 | 9211126 | 9210995 | ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1 |
chr2_1 | CDS | 9210556 | 9210745 | 9210556 | ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1 |
chr2_1 | CDS | 9208602 | 9209203 | 9208602 | ID=Msa0193380-mRNA-1:cds;Parent=Msa0193380-mRNA-1 |
chr2_1 | three_prime_UTR | 9208442 | 9208601 | 9208442 | ID=Msa0193380-mRNA-1:three_prime_utr;Parent=Msa0193380-mRNA-1 |
Gene Sequence |
Protein sequence |