Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193670 | XP_013462567.1 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 7.77e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193670 | sp|Q9FJK3|AGL80_ARATH | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 1.03e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193670 | G7ZXK2 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 3.71e-165 | 465 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0193670 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193670 | MtrunA17_Chr2g0283941 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 7.15e-169 | 465 |
| Msa0193670 | MtrunA17_Chr3g0107381 | 47.486 | 179 | 91 | 2 | 1 | 177 | 1 | 178 | 2.14e-49 | 161 |
| Msa0193670 | MtrunA17_Chr3g0106421 | 41.872 | 203 | 109 | 3 | 29 | 227 | 1 | 198 | 7.16e-47 | 155 |
| Msa0193670 | MtrunA17_Chr3g0107461 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 3.82e-41 | 138 |
| Msa0193670 | MtrunA17_Chr8g0351751 | 46.250 | 160 | 84 | 1 | 1 | 158 | 1 | 160 | 5.79e-40 | 138 |
| Msa0193670 | MtrunA17_Chr5g0432691 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 2.74e-37 | 128 |
| Msa0193670 | MtrunA17_Chr3g0105791 | 43.972 | 141 | 79 | 0 | 29 | 169 | 1 | 141 | 7.42e-37 | 127 |
| Msa0193670 | MtrunA17_Chr4g0014321 | 37.500 | 200 | 111 | 2 | 1 | 200 | 1 | 186 | 7.66e-37 | 129 |
| Msa0193670 | MtrunA17_Chr3g0110131 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 1.51e-36 | 129 |
| Msa0193670 | MtrunA17_Chr4g0031421 | 43.885 | 139 | 78 | 0 | 29 | 167 | 1 | 139 | 3.25e-36 | 125 |
| Msa0193670 | MtrunA17_Chr4g0014031 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 4.43e-34 | 122 |
| Msa0193670 | MtrunA17_Chr4g0013041 | 35.829 | 187 | 108 | 4 | 1 | 183 | 1 | 179 | 4.23e-32 | 116 |
| Msa0193670 | MtrunA17_Chr3g0106501 | 42.963 | 135 | 77 | 0 | 29 | 163 | 1 | 135 | 1.00e-29 | 108 |
| Msa0193670 | MtrunA17_Chr2g0296861 | 39.873 | 158 | 94 | 1 | 1 | 158 | 1 | 157 | 3.24e-29 | 107 |
| Msa0193670 | MtrunA17_Chr4g0014131 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 3.27e-29 | 109 |
| Msa0193670 | MtrunA17_Chr3g0107331 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 8.82e-29 | 106 |
| Msa0193670 | MtrunA17_Chr1g0188681 | 39.073 | 151 | 90 | 2 | 1 | 151 | 1 | 149 | 4.18e-28 | 104 |
| Msa0193670 | MtrunA17_Chr4g0014121 | 40.252 | 159 | 95 | 0 | 1 | 159 | 29 | 187 | 4.30e-28 | 105 |
| Msa0193670 | MtrunA17_Chr1g0197261 | 39.490 | 157 | 91 | 3 | 1 | 156 | 1 | 154 | 7.24e-28 | 104 |
| Msa0193670 | MtrunA17_Chr5g0420351 | 37.086 | 151 | 93 | 2 | 1 | 151 | 1 | 149 | 4.25e-27 | 102 |
| Msa0193670 | MtrunA17_Chr3g0107351 | 37.671 | 146 | 90 | 1 | 5 | 150 | 4 | 148 | 4.59e-26 | 99.8 |
| Msa0193670 | MtrunA17_Chr2g0296831 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.00e-25 | 97.4 |
| Msa0193670 | MtrunA17_Chr3g0107361 | 38.356 | 146 | 89 | 1 | 5 | 150 | 4 | 148 | 2.56e-25 | 97.8 |
| Msa0193670 | MtrunA17_Chr1g0197461 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 1.86e-24 | 95.1 |
| Msa0193670 | MtrunA17_Chr1g0197321 | 34.615 | 156 | 101 | 1 | 1 | 156 | 1 | 155 | 1.23e-23 | 93.2 |
| Msa0193670 | MtrunA17_Chr3g0107341 | 34.667 | 150 | 97 | 1 | 5 | 154 | 4 | 152 | 2.04e-23 | 92.8 |
| Msa0193670 | MtrunA17_Chr1g0188661 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 2.80e-23 | 92.4 |
| Msa0193670 | MtrunA17_Chr7g0218151 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 1.08e-22 | 90.9 |
| Msa0193670 | MtrunA17_Chr4g0012761 | 37.107 | 159 | 98 | 2 | 1 | 159 | 1 | 157 | 2.10e-21 | 87.4 |
| Msa0193670 | MtrunA17_Chr3g0128721 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 4.80e-21 | 91.7 |
| Msa0193670 | MtrunA17_Chr1g0193311 | 35.256 | 156 | 99 | 2 | 1 | 156 | 1 | 154 | 4.70e-20 | 83.6 |
| Msa0193670 | MtrunA17_Chr4g0008701 | 31.973 | 147 | 96 | 2 | 4 | 150 | 7 | 149 | 4.98e-19 | 85.5 |
| Msa0193670 | MtrunA17_Chr1g0188651 | 37.013 | 154 | 93 | 3 | 1 | 154 | 1 | 150 | 5.03e-19 | 80.9 |
| Msa0193670 | MtrunA17_Chr7g0267601 | 30.612 | 147 | 98 | 2 | 4 | 150 | 7 | 149 | 1.81e-18 | 84.0 |
| Msa0193670 | MtrunA17_Chr4g0022641 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 7.31e-14 | 70.1 |
| Msa0193670 | MtrunA17_Chr1g0212151 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 3.16e-13 | 68.2 |
| Msa0193670 | MtrunA17_Chr4g0059631 | 22.018 | 218 | 148 | 5 | 3 | 208 | 2 | 209 | 4.78e-12 | 63.9 |
| Msa0193670 | MtrunA17_Chr6g0457851 | 31.481 | 108 | 66 | 4 | 3 | 103 | 12 | 118 | 6.86e-12 | 64.3 |
| Msa0193670 | MtrunA17_Chr1g0212471 | 29.114 | 158 | 97 | 6 | 3 | 154 | 2 | 150 | 1.29e-11 | 62.0 |
| Msa0193670 | MtrunA17_Chr6g0449851 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 2.57e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0193670 | AT5G48670.1 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 1.05e-31 | 119 |
| Msa0193670 | AT3G05860.3 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 3.09e-31 | 115 |
| Msa0193670 | AT3G05860.2 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 3.39e-31 | 114 |
| Msa0193670 | AT3G05860.1 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 4.42e-31 | 115 |
| Msa0193670 | AT1G65300.1 | 36.184 | 152 | 96 | 1 | 4 | 155 | 3 | 153 | 1.90e-29 | 112 |
| Msa0193670 | AT5G27960.1 | 36.129 | 155 | 94 | 2 | 4 | 156 | 2 | 153 | 2.42e-27 | 107 |
| Msa0193670 | AT5G26650.1 | 36.601 | 153 | 96 | 1 | 4 | 156 | 2 | 153 | 4.00e-27 | 107 |
| Msa0193670 | AT1G65330.1 | 35.099 | 151 | 97 | 1 | 5 | 155 | 4 | 153 | 2.46e-25 | 101 |
| Msa0193670 | AT2G28700.1 | 30.189 | 212 | 139 | 4 | 1 | 208 | 1 | 207 | 3.14e-23 | 96.3 |
| Msa0193670 | AT1G31640.1 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 7.67e-22 | 94.0 |
| Msa0193670 | AT1G31630.1 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 9.06e-22 | 92.4 |
| Msa0193670 | AT1G22590.2 | 31.013 | 158 | 105 | 1 | 1 | 158 | 1 | 154 | 1.14e-20 | 85.9 |
| Msa0193670 | AT5G27810.1 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.22e-19 | 82.0 |
| Msa0193670 | AT2G40210.1 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 1.03e-18 | 84.3 |
| Msa0193670 | AT5G26580.1 | 31.210 | 157 | 89 | 3 | 1 | 155 | 1 | 140 | 2.19e-17 | 80.5 |
| Msa0193670 | AT5G06500.1 | 29.630 | 162 | 110 | 2 | 1 | 161 | 1 | 159 | 9.07e-17 | 77.4 |
| Msa0193670 | AT5G26630.1 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 9.19e-16 | 73.9 |
| Msa0193670 | AT5G55690.1 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.09e-15 | 73.2 |
| Msa0193670 | AT5G55690.2 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.09e-15 | 73.2 |
| Msa0193670 | AT5G58890.1 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 8.58e-14 | 69.7 |
| Msa0193670 | AT2G15660.1 | 28.182 | 110 | 77 | 2 | 38 | 147 | 31 | 138 | 6.27e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATACTTTAGTAATAAAT+TGG | 0.162034 | 2_1:-9492640 | None:intergenic |
| AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2_1:+9492820 | Msa0193670:CDS |
| AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2_1:+9492868 | Msa0193670:CDS |
| CTTCAGATTGTTATCTATAA+AGG | 0.253823 | 2_1:-9492720 | None:intergenic |
| TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2_1:+9492914 | Msa0193670:CDS |
| TTGATCATCGTTGTCATGAC+TGG | 0.312663 | 2_1:+9491936 | None:intergenic |
| ATACGGACATTAATGGTCTT+TGG | 0.313083 | 2_1:+9492999 | Msa0193670:CDS |
| GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2_1:-9492482 | None:intergenic |
| GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2_1:+9492833 | Msa0193670:CDS |
| TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2_1:-9491985 | None:intergenic |
| TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2_1:+9492370 | Msa0193670:intron |
| GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2_1:+9492803 | Msa0193670:CDS |
| AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2_1:+9492982 | Msa0193670:CDS |
| GAAGCATGCGCAATAATCTT+TGG | 0.415897 | 2_1:+9492422 | Msa0193670:CDS |
| GATGTTAATACGGACATTAA+TGG | 0.419770 | 2_1:+9492992 | Msa0193670:CDS |
| ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2_1:+9492592 | Msa0193670:CDS |
| ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2_1:-9492571 | None:intergenic |
| GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2_1:-9492461 | None:intergenic |
| TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2_1:+9492779 | Msa0193670:CDS |
| ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2_1:+9492450 | Msa0193670:CDS |
| ACAATCTGAAGAAAATTGAT+TGG | 0.445024 | 2_1:+9492732 | Msa0193670:CDS |
| TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2_1:-9492504 | None:intergenic |
| AAATACTTTAGTAATAAATT+GGG | 0.448846 | 2_1:-9492639 | None:intergenic |
| CTCATTCATGTTCACATCCT+CGG | 0.449631 | 2_1:-9492681 | None:intergenic |
| ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2_1:+9492821 | Msa0193670:CDS |
| ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2_1:+9492647 | Msa0193670:CDS |
| TCATTCATGTTCACATCCTC+GGG | 0.496079 | 2_1:-9492680 | None:intergenic |
| TGGTGCTGATGTCCAAGGTT+TGG | 0.501853 | 2_1:+9492895 | Msa0193670:CDS |
| TGTTATCTATAAAGGCCATC+AGG | 0.507830 | 2_1:-9492712 | None:intergenic |
| TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2_1:+9492811 | Msa0193670:CDS |
| ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2_1:+9492773 | Msa0193670:CDS |
| CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2_1:+9492458 | Msa0193670:CDS |
| TGATCATCGTTGTCATGACT+GGG | 0.524662 | 2_1:+9491937 | None:intergenic |
| TCATGTTGCTATCCAAACCT+TGG | 0.527597 | 2_1:-9492907 | None:intergenic |
| ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2_1:+9492812 | Msa0193670:CDS |
| AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2_1:+9492797 | Msa0193670:CDS |
| ATCTGAAGAAAATTGATTGG+AGG | 0.531271 | 2_1:+9492735 | Msa0193670:CDS |
| GGAGATATGCAAGCTAATAT+GGG | 0.531775 | 2_1:+9492869 | Msa0193670:CDS |
| CGTTGTCATGACTGGGAGGA+AGG | 0.534161 | 2_1:+9491944 | None:intergenic |
| GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2_1:-9492511 | None:intergenic |
| TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2_1:-9492473 | None:intergenic |
| ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2_1:+9491979 | Msa0193670:CDS |
| TGATTGGAGGTTGCAATCGA+CGG | 0.558130 | 2_1:+9492748 | Msa0193670:CDS |
| TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2_1:+9492838 | Msa0193670:CDS |
| TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2_1:+9492946 | Msa0193670:CDS |
| GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2_1:+9492945 | Msa0193670:CDS |
| ATGCAAGCTAATATGGGCCA+TGG | 0.597067 | 2_1:+9492875 | Msa0193670:CDS |
| TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2_1:+9492919 | Msa0193670:CDS |
| ATGAAATCAGCACTCTATGT+GGG | 0.608529 | 2_1:+9492396 | Msa0193670:CDS |
| AATGAAATCAGCACTCTATG+TGG | 0.614486 | 2_1:+9492395 | Msa0193670:CDS |
| GACGGAAATTCAATCTCAAG+AGG | 0.615492 | 2_1:+9492766 | Msa0193670:CDS |
| GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2_1:+9492848 | Msa0193670:CDS |
| GGCCATGGTGCTGATGTCCA+AGG | 0.619615 | 2_1:+9492890 | Msa0193670:CDS |
| GAATGAGCTGAATGACCTGA+TGG | 0.627003 | 2_1:+9492697 | Msa0193670:CDS |
| AACATCATGAAATGCTAACA+TGG | 0.649787 | 2_1:-9492975 | None:intergenic |
| GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2_1:+9492834 | Msa0193670:CDS |
| GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2_1:+9492595 | Msa0193670:CDS |
| AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2_1:+9491983 | Msa0193670:CDS |
| GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2_1:-9492962 | None:intergenic |
| TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2_1:+9492664 | Msa0193670:CDS |
| AACCTTGGACATCAGCACCA+TGG | 0.676746 | 2_1:-9492892 | None:intergenic |
| TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2_1:+9492445 | Msa0193670:CDS |
| AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2_1:-9492959 | None:intergenic |
| TCATCGTTGTCATGACTGGG+AGG | 0.723014 | 2_1:+9491940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_1:9492273-9492292 | Msa0193670:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_1:9492642-9492661 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_1:9492643-9492662 | None:intergenic | 10.0% |
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_1:9492273-9492292 | Msa0193670:intron | 10.0% |
| !! | AAATACTTTAGTAATAAATT+GGG | - | chr2_1:9492642-9492661 | None:intergenic | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_1:9492643-9492662 | None:intergenic | 10.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_1:9492356-9492375 | Msa0193670:intron | 15.0% |
| !!! | AACTATATATGTTTTTCAAT+AGG | + | chr2_1:9492356-9492375 | Msa0193670:intron | 15.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_1:9492077-9492096 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_1:9492095-9492114 | Msa0193670:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_1:9492100-9492119 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_1:9492112-9492131 | Msa0193670:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_1:9492200-9492219 | Msa0193670:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_1:9492201-9492220 | Msa0193670:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_1:9492354-9492373 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_1:9492647-9492666 | Msa0193670:CDS | 20.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_1:9492077-9492096 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_1:9492095-9492114 | Msa0193670:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_1:9492100-9492119 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_1:9492112-9492131 | Msa0193670:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_1:9492200-9492219 | Msa0193670:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_1:9492201-9492220 | Msa0193670:intron | 20.0% |
| !! | TGAAAAACATATATAGTTAG+AGG | - | chr2_1:9492354-9492373 | None:intergenic | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_1:9492647-9492666 | Msa0193670:CDS | 20.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_1:9492050-9492069 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_1:9492592-9492611 | Msa0193670:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_1:9492723-9492742 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_1:9492732-9492751 | Msa0193670:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_1:9492982-9493001 | Msa0193670:CDS | 25.0% |
| !! | TACACGCTTTATTGAAAATA+AGG | - | chr2_1:9492050-9492069 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_1:9492592-9492611 | Msa0193670:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_1:9492723-9492742 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_1:9492732-9492751 | Msa0193670:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_1:9492982-9493001 | Msa0193670:CDS | 25.0% |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_1:9492188-9492207 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_1:9492370-9492389 | Msa0193670:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_1:9492526-9492545 | Msa0193670:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_1:9492574-9492593 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_1:9492735-9492754 | Msa0193670:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_1:9492811-9492830 | Msa0193670:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_1:9492812-9492831 | Msa0193670:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_1:9492820-9492839 | Msa0193670:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_1:9492821-9492840 | Msa0193670:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_1:9492914-9492933 | Msa0193670:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_1:9492978-9492997 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATTAA+TGG | + | chr2_1:9492992-9493011 | Msa0193670:CDS | 30.0% | |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_1:9492188-9492207 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_1:9492370-9492389 | Msa0193670:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_1:9492526-9492545 | Msa0193670:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_1:9492574-9492593 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_1:9492735-9492754 | Msa0193670:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_1:9492811-9492830 | Msa0193670:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_1:9492812-9492831 | Msa0193670:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_1:9492820-9492839 | Msa0193670:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_1:9492821-9492840 | Msa0193670:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_1:9492914-9492933 | Msa0193670:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_1:9492978-9492997 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATTAA+TGG | + | chr2_1:9492992-9493011 | Msa0193670:CDS | 30.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_1:9492008-9492027 | Msa0193670:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_1:9492395-9492414 | Msa0193670:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_1:9492396-9492415 | Msa0193670:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_1:9492485-9492504 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_1:9492524-9492543 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_1:9492595-9492614 | Msa0193670:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_1:9492715-9492734 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_1:9492797-9492816 | Msa0193670:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_1:9492803-9492822 | Msa0193670:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_1:9492868-9492887 | Msa0193670:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_1:9492869-9492888 | Msa0193670:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_1:9492919-9492938 | Msa0193670:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_1:9492946-9492965 | Msa0193670:CDS | 35.0% | |
| ATACGGACATTAATGGTCTT+TGG | + | chr2_1:9492999-9493018 | Msa0193670:CDS | 35.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_1:9492008-9492027 | Msa0193670:CDS | 35.0% | |
| AATGAAATCAGCACTCTATG+TGG | + | chr2_1:9492395-9492414 | Msa0193670:CDS | 35.0% | |
| ATGAAATCAGCACTCTATGT+GGG | + | chr2_1:9492396-9492415 | Msa0193670:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_1:9492485-9492504 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_1:9492524-9492543 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_1:9492595-9492614 | Msa0193670:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_1:9492715-9492734 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_1:9492797-9492816 | Msa0193670:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_1:9492803-9492822 | Msa0193670:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_1:9492868-9492887 | Msa0193670:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_1:9492869-9492888 | Msa0193670:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_1:9492919-9492938 | Msa0193670:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_1:9492946-9492965 | Msa0193670:CDS | 35.0% | |
| ATACGGACATTAATGGTCTT+TGG | + | chr2_1:9492999-9493018 | Msa0193670:CDS | 35.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_1:9492000-9492019 | Msa0193670:CDS | 40.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_1:9492422-9492441 | Msa0193670:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_1:9492445-9492464 | Msa0193670:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_1:9492529-9492548 | Msa0193670:CDS | 40.0% | |
| TCATTCATGTTCACATCCTC+GGG | - | chr2_1:9492683-9492702 | None:intergenic | 40.0% | |
| CTCATTCATGTTCACATCCT+CGG | - | chr2_1:9492684-9492703 | None:intergenic | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_1:9492766-9492785 | Msa0193670:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_1:9492773-9492792 | Msa0193670:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_1:9492834-9492853 | Msa0193670:CDS | 40.0% | |
| TCATGTTGCTATCCAAACCT+TGG | - | chr2_1:9492910-9492929 | None:intergenic | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_1:9492945-9492964 | Msa0193670:CDS | 40.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_1:9492000-9492019 | Msa0193670:CDS | 40.0% | |
| GAAGCATGCGCAATAATCTT+TGG | + | chr2_1:9492422-9492441 | Msa0193670:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_1:9492445-9492464 | Msa0193670:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_1:9492529-9492548 | Msa0193670:CDS | 40.0% | |
| TCATTCATGTTCACATCCTC+GGG | - | chr2_1:9492683-9492702 | None:intergenic | 40.0% | |
| CTCATTCATGTTCACATCCT+CGG | - | chr2_1:9492684-9492703 | None:intergenic | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_1:9492766-9492785 | Msa0193670:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_1:9492773-9492792 | Msa0193670:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_1:9492834-9492853 | Msa0193670:CDS | 40.0% | |
| TCATGTTGCTATCCAAACCT+TGG | - | chr2_1:9492910-9492929 | None:intergenic | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_1:9492945-9492964 | Msa0193670:CDS | 40.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_1:9491979-9491998 | Msa0193670:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_1:9492450-9492469 | Msa0193670:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_1:9492476-9492495 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_1:9492507-9492526 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_1:9492514-9492533 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_1:9492697-9492716 | Msa0193670:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_1:9492748-9492767 | Msa0193670:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_1:9492779-9492798 | Msa0193670:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_1:9492833-9492852 | Msa0193670:CDS | 45.0% | |
| ATGCAAGCTAATATGGGCCA+TGG | + | chr2_1:9492875-9492894 | Msa0193670:CDS | 45.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_1:9491979-9491998 | Msa0193670:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_1:9492450-9492469 | Msa0193670:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_1:9492476-9492495 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_1:9492507-9492526 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_1:9492514-9492533 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_1:9492697-9492716 | Msa0193670:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_1:9492748-9492767 | Msa0193670:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_1:9492779-9492798 | Msa0193670:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_1:9492833-9492852 | Msa0193670:CDS | 45.0% | |
| ATGCAAGCTAATATGGGCCA+TGG | + | chr2_1:9492875-9492894 | Msa0193670:CDS | 45.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_1:9491983-9492002 | Msa0193670:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_1:9491988-9492007 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_1:9492664-9492683 | Msa0193670:CDS | 50.0% | |
| AACCTTGGACATCAGCACCA+TGG | - | chr2_1:9492895-9492914 | None:intergenic | 50.0% | |
| !! | TGGTGCTGATGTCCAAGGTT+TGG | + | chr2_1:9492895-9492914 | Msa0193670:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_1:9492962-9492981 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_1:9492965-9492984 | None:intergenic | 50.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_1:9491983-9492002 | Msa0193670:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_1:9491988-9492007 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_1:9492664-9492683 | Msa0193670:CDS | 50.0% | |
| AACCTTGGACATCAGCACCA+TGG | - | chr2_1:9492895-9492914 | None:intergenic | 50.0% | |
| !! | TGGTGCTGATGTCCAAGGTT+TGG | + | chr2_1:9492895-9492914 | Msa0193670:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_1:9492962-9492981 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_1:9492965-9492984 | None:intergenic | 50.0% | |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_1:9492458-9492477 | Msa0193670:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_1:9492838-9492857 | Msa0193670:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_1:9492848-9492867 | Msa0193670:CDS | 55.0% |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_1:9492458-9492477 | Msa0193670:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_1:9492838-9492857 | Msa0193670:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_1:9492848-9492867 | Msa0193670:CDS | 55.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_1:9492464-9492483 | None:intergenic | 60.0% | |
| !! | GGCCATGGTGCTGATGTCCA+AGG | + | chr2_1:9492890-9492909 | Msa0193670:CDS | 60.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_1:9492464-9492483 | None:intergenic | 60.0% | |
| !! | GGCCATGGTGCTGATGTCCA+AGG | + | chr2_1:9492890-9492909 | Msa0193670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9491951 | 9493030 | 9491951 | ID=Msa0193670;Name=Msa0193670 |
| chr2_1 | mRNA | 9491951 | 9493030 | 9491951 | ID=Msa0193670-mRNA-1;Parent=Msa0193670;Name=Msa0193670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|243 |
| chr2_1 | exon | 9491951 | 9492029 | 9491951 | ID=Msa0193670-mRNA-1:exon:4350;Parent=Msa0193670-mRNA-1 |
| chr2_1 | exon | 9492378 | 9493030 | 9492378 | ID=Msa0193670-mRNA-1:exon:4351;Parent=Msa0193670-mRNA-1 |
| chr2_1 | CDS | 9491951 | 9492029 | 9491951 | ID=Msa0193670-mRNA-1:cds;Parent=Msa0193670-mRNA-1 |
| chr2_1 | CDS | 9492378 | 9493030 | 9492378 | ID=Msa0193670-mRNA-1:cds;Parent=Msa0193670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
