Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194980 | XP_003593962.1 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194980 | G7IPZ5 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0194980 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194980 | MtrunA17_Chr2g0286191 | 82.888 | 374 | 55 | 2 | 1 | 373 | 1 | 366 | 0.0 | 610 |
| Msa0194980 | MtrunA17_Chr2g0295761 | 47.826 | 345 | 165 | 5 | 30 | 366 | 52 | 389 | 4.41e-102 | 306 |
| Msa0194980 | MtrunA17_Chr2g0295731 | 45.723 | 339 | 178 | 4 | 32 | 366 | 41 | 377 | 1.02e-98 | 298 |
| Msa0194980 | MtrunA17_Chr4g0067121 | 45.994 | 337 | 177 | 4 | 33 | 366 | 46 | 380 | 2.84e-96 | 292 |
| Msa0194980 | MtrunA17_Chr2g0295741 | 45.055 | 364 | 182 | 7 | 12 | 366 | 22 | 376 | 3.47e-96 | 291 |
| Msa0194980 | MtrunA17_Chr2g0296151 | 44.205 | 371 | 200 | 5 | 1 | 366 | 2 | 370 | 1.97e-94 | 287 |
| Msa0194980 | MtrunA17_Chr2g0296121 | 46.608 | 339 | 175 | 4 | 32 | 366 | 120 | 456 | 4.55e-94 | 289 |
| Msa0194980 | MtrunA17_Chr2g0296301 | 42.165 | 351 | 200 | 3 | 18 | 365 | 15 | 365 | 2.24e-89 | 274 |
| Msa0194980 | MtrunA17_Chr2g0296111 | 44.297 | 377 | 188 | 7 | 1 | 366 | 5 | 370 | 1.89e-88 | 271 |
| Msa0194980 | MtrunA17_Chr2g0286221 | 76.074 | 163 | 39 | 0 | 208 | 370 | 11 | 173 | 2.85e-86 | 259 |
| Msa0194980 | MtrunA17_Chr2g0296711 | 41.954 | 348 | 183 | 7 | 38 | 373 | 53 | 393 | 7.71e-82 | 256 |
| Msa0194980 | MtrunA17_Chr4g0067671 | 41.159 | 328 | 179 | 4 | 29 | 349 | 35 | 355 | 2.15e-78 | 245 |
| Msa0194980 | MtrunA17_Chr2g0296291 | 38.250 | 400 | 203 | 7 | 7 | 366 | 3 | 398 | 4.14e-78 | 246 |
| Msa0194980 | MtrunA17_Chr2g0296251 | 39.043 | 397 | 188 | 7 | 16 | 366 | 10 | 398 | 6.81e-78 | 245 |
| Msa0194980 | MtrunA17_Chr2g0296191 | 40.710 | 366 | 200 | 5 | 7 | 365 | 154 | 509 | 7.80e-77 | 256 |
| Msa0194980 | MtrunA17_Chr2g0296191 | 39.773 | 352 | 183 | 8 | 30 | 363 | 654 | 994 | 9.69e-66 | 225 |
| Msa0194980 | MtrunA17_Chr4g0067141 | 40.870 | 345 | 189 | 5 | 33 | 370 | 39 | 375 | 1.19e-76 | 241 |
| Msa0194980 | MtrunA17_Chr2g0296741 | 39.344 | 366 | 195 | 8 | 14 | 366 | 52 | 403 | 1.49e-73 | 234 |
| Msa0194980 | MtrunA17_Chr2g0315731 | 40.988 | 344 | 194 | 7 | 30 | 366 | 62 | 403 | 4.39e-73 | 233 |
| Msa0194980 | MtrunA17_Chr2g0296231 | 40.580 | 345 | 184 | 8 | 34 | 366 | 45 | 380 | 5.85e-72 | 229 |
| Msa0194980 | MtrunA17_Chr2g0296721 | 39.942 | 343 | 198 | 5 | 30 | 366 | 42 | 382 | 6.12e-72 | 229 |
| Msa0194980 | MtrunA17_Chr2g0296221 | 40.282 | 355 | 183 | 8 | 30 | 366 | 71 | 414 | 7.59e-72 | 230 |
| Msa0194980 | MtrunA17_Chr2g0296171 | 39.828 | 349 | 181 | 8 | 38 | 368 | 60 | 397 | 6.08e-70 | 225 |
| Msa0194980 | MtrunA17_Chr4g0001831 | 36.648 | 352 | 216 | 4 | 22 | 367 | 21 | 371 | 5.20e-67 | 216 |
| Msa0194980 | MtrunA17_Chr2g0296181 | 38.596 | 342 | 174 | 6 | 32 | 366 | 45 | 357 | 8.93e-64 | 208 |
| Msa0194980 | MtrunA17_Chr2g0296131 | 48.366 | 153 | 77 | 2 | 215 | 365 | 9 | 161 | 2.34e-42 | 145 |
| Msa0194980 | MtrunA17_Chr2g0296551 | 44.505 | 182 | 97 | 3 | 187 | 366 | 5 | 184 | 4.32e-42 | 146 |
| Msa0194980 | MtrunA17_Chr2g0296161 | 50.000 | 156 | 76 | 2 | 213 | 366 | 3 | 158 | 4.42e-42 | 145 |
| Msa0194980 | MtrunA17_Chr2g0296211 | 34.708 | 291 | 159 | 8 | 98 | 366 | 77 | 358 | 4.25e-40 | 145 |
| Msa0194980 | MtrunA17_Chr2g0296211 | 35.156 | 128 | 77 | 3 | 1 | 122 | 77 | 204 | 4.69e-11 | 63.5 |
| Msa0194980 | MtrunA17_Chr2g0296701 | 48.684 | 152 | 76 | 2 | 217 | 366 | 5 | 156 | 8.64e-39 | 136 |
| Msa0194980 | MtrunA17_Chr8g0377781 | 30.952 | 336 | 224 | 6 | 31 | 360 | 35 | 368 | 1.03e-37 | 139 |
| Msa0194980 | MtrunA17_Chr2g0295711 | 44.231 | 156 | 85 | 1 | 32 | 185 | 40 | 195 | 2.29e-36 | 131 |
| Msa0194980 | MtrunA17_Chr8g0377801 | 28.824 | 340 | 234 | 6 | 31 | 364 | 48 | 385 | 1.21e-35 | 134 |
| Msa0194980 | MtrunA17_Chr2g0295751 | 45.912 | 159 | 80 | 3 | 8 | 164 | 21 | 175 | 3.88e-34 | 132 |
| Msa0194980 | MtrunA17_Chr2g0296751 | 50.394 | 127 | 62 | 1 | 241 | 366 | 3 | 129 | 1.93e-33 | 122 |
| Msa0194980 | MtrunA17_Chr2g0295721 | 51.754 | 114 | 54 | 1 | 213 | 325 | 3 | 116 | 3.90e-32 | 117 |
| Msa0194980 | MtrunA17_Chr2g0296561 | 40.385 | 156 | 84 | 3 | 7 | 159 | 3 | 152 | 7.05e-24 | 96.3 |
| Msa0194980 | MtrunA17_Chr4g0067131 | 46.914 | 81 | 42 | 1 | 283 | 362 | 1 | 81 | 4.88e-17 | 75.5 |
| Msa0194980 | MtrunA17_Chr8g0339041 | 21.253 | 367 | 249 | 14 | 25 | 367 | 1 | 351 | 2.32e-13 | 70.9 |
| Msa0194980 | MtrunA17_Chr4g0067681 | 50.000 | 58 | 29 | 0 | 272 | 329 | 1 | 58 | 3.43e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194980 | AT5G07900.1 | 37.126 | 334 | 204 | 3 | 36 | 363 | 66 | 399 | 3.03e-75 | 239 |
| Msa0194980 | AT1G21150.1 | 34.821 | 336 | 213 | 3 | 38 | 367 | 55 | 390 | 9.95e-60 | 198 |
| Msa0194980 | AT1G21150.2 | 34.821 | 336 | 213 | 3 | 38 | 367 | 119 | 454 | 5.19e-59 | 198 |
| Msa0194980 | AT1G21150.3 | 33.426 | 359 | 228 | 4 | 15 | 367 | 1 | 354 | 1.95e-58 | 194 |
| Msa0194980 | AT1G61980.3 | 28.912 | 377 | 209 | 11 | 36 | 363 | 49 | 415 | 1.37e-40 | 148 |
| Msa0194980 | AT1G61980.2 | 28.912 | 377 | 209 | 11 | 36 | 363 | 49 | 415 | 1.37e-40 | 148 |
| Msa0194980 | AT1G61980.1 | 28.912 | 377 | 209 | 11 | 36 | 363 | 49 | 415 | 1.37e-40 | 148 |
| Msa0194980 | AT1G62120.1 | 28.125 | 384 | 225 | 12 | 30 | 367 | 47 | 425 | 1.26e-39 | 146 |
| Msa0194980 | AT1G61970.2 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.7 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.6 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.3 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.5 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.4 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61970.1 | 27.835 | 388 | 221 | 11 | 29 | 363 | 34 | 415 | 2.30e-38 | 142 |
| Msa0194980 | AT1G61990.2 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 4.20e-37 | 139 |
| Msa0194980 | AT1G61990.1 | 28.455 | 369 | 214 | 10 | 36 | 363 | 49 | 408 | 4.20e-37 | 139 |
| Msa0194980 | AT1G62110.1 | 27.546 | 432 | 212 | 13 | 29 | 370 | 42 | 462 | 1.06e-36 | 139 |
| Msa0194980 | AT1G62085.1 | 28.502 | 414 | 214 | 13 | 33 | 367 | 49 | 459 | 2.15e-35 | 135 |
| Msa0194980 | AT1G62085.2 | 28.502 | 414 | 214 | 13 | 33 | 367 | 49 | 459 | 2.15e-35 | 135 |
| Msa0194980 | AT3G46950.1 | 32.157 | 255 | 161 | 5 | 29 | 279 | 42 | 288 | 2.63e-35 | 134 |
| Msa0194980 | AT1G62010.1 | 27.794 | 349 | 197 | 9 | 65 | 367 | 64 | 403 | 4.80e-35 | 133 |
| Msa0194980 | AT5G23930.1 | 27.970 | 404 | 211 | 9 | 29 | 359 | 45 | 441 | 4.90e-35 | 134 |
| Msa0194980 | AT1G62150.1 | 26.570 | 414 | 221 | 12 | 33 | 367 | 52 | 461 | 4.50e-33 | 129 |
| Msa0194980 | AT1G61960.1 | 27.317 | 410 | 213 | 14 | 34 | 363 | 47 | 451 | 5.28e-32 | 125 |
| Msa0194980 | AT5G64950.1 | 27.424 | 361 | 241 | 9 | 20 | 364 | 21 | 376 | 1.54e-27 | 112 |
| Msa0194980 | AT1G56380.1 | 25.668 | 374 | 222 | 12 | 40 | 363 | 17 | 384 | 1.42e-22 | 98.2 |
| Msa0194980 | AT1G56380.2 | 26.099 | 364 | 215 | 11 | 40 | 355 | 28 | 385 | 2.04e-22 | 98.2 |
| Msa0194980 | AT1G79220.1 | 24.080 | 299 | 186 | 5 | 75 | 368 | 119 | 381 | 3.03e-15 | 77.0 |
Find 56 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCCCATACGGATTT+TGG | 0.131006 | 2_1:-11588161 | None:intergenic |
| CATAAGAAGTATTGGATATT+TGG | 0.165459 | 2_1:-11588336 | None:intergenic |
| GAAAGAAGGAAATTGAATTT+AGG | 0.170730 | 2_1:-11587768 | None:intergenic |
| TGACTGTAAAAGAGTGATTT+TGG | 0.173839 | 2_1:-11587548 | None:intergenic |
| AGACAACATAAGAGGATTTC+TGG | 0.180313 | 2_1:-11587829 | None:intergenic |
| ATTCAATTTCCTTCTTTCTA+AGG | 0.183402 | 2_1:+11587773 | Msa0194980:CDS |
| AAAGAAGGAAATTGAATTTA+GGG | 0.185509 | 2_1:-11587767 | None:intergenic |
| ATTCAATTCCTGCTTCAAAA+TGG | 0.189508 | 2_1:+11587981 | Msa0194980:CDS |
| GATGCTTCAACTTTCAAATA+AGG | 0.222209 | 2_1:+11588545 | Msa0194980:CDS |
| GAGAGTTTAGAAGCAGTTTC+TGG | 0.245687 | 2_1:-11587600 | None:intergenic |
| AATACTTCTTATGCTGAGTT+TGG | 0.261332 | 2_1:+11588346 | Msa0194980:CDS |
| TCAATCCAAAGGTTTGATTA+AGG | 0.262442 | 2_1:+11588409 | Msa0194980:CDS |
| GAGATGGGAATTTCGAATAA+AGG | 0.321704 | 2_1:-11587953 | None:intergenic |
| TTCAATTCCTGCTTCAAAAT+GGG | 0.338390 | 2_1:+11587982 | Msa0194980:CDS |
| AATAAGGCGATGACTGAATC+AGG | 0.360376 | 2_1:-11587654 | None:intergenic |
| AGTATTTGAGAAGGCAGTTT+TGG | 0.367653 | 2_1:+11588070 | Msa0194980:CDS |
| GATTAATGCGTATAAGAAAT+GGG | 0.369032 | 2_1:+11588184 | Msa0194980:CDS |
| TTTGATGAGAGATGATAATT+GGG | 0.380318 | 2_1:-11587700 | None:intergenic |
| AGATTAATGCGTATAAGAAA+TGG | 0.381339 | 2_1:+11588183 | Msa0194980:CDS |
| GAAATTGAATTTAGGGAGAA+TGG | 0.403378 | 2_1:-11587760 | None:intergenic |
| TTCAATTTCCTTCTTTCTAA+GGG | 0.407285 | 2_1:+11587774 | Msa0194980:CDS |
| AGCATCCTTAATCAAACCTT+TGG | 0.408692 | 2_1:-11588414 | None:intergenic |
| GAAACCATAGGATTTGAATA+AGG | 0.422117 | 2_1:-11587670 | None:intergenic |
| AAGCTTTGAGACAACATAAG+AGG | 0.427786 | 2_1:-11587837 | None:intergenic |
| AACTACCTCATTCAAAATTG+TGG | 0.437653 | 2_1:+11587570 | Msa0194980:CDS |
| TCTTATGTTGTCTCAAAGCT+TGG | 0.442901 | 2_1:+11587839 | Msa0194980:CDS |
| ATCGCCTTATTCAAATCCTA+TGG | 0.446132 | 2_1:+11587666 | Msa0194980:CDS |
| AAGAAGATGAAGAGTTATTG+AGG | 0.449182 | 2_1:-11587499 | None:intergenic |
| TTGAAGCACCCTTAGAAAGA+AGG | 0.450723 | 2_1:-11587782 | None:intergenic |
| AAACTCAGCATAAGAAGTAT+TGG | 0.453268 | 2_1:-11588344 | None:intergenic |
| ACTACCTCATTCAAAATTGT+GGG | 0.457092 | 2_1:+11587571 | Msa0194980:CDS |
| TCTTAGCATGTAGCGCGATA+AGG | 0.468571 | 2_1:-11588133 | None:intergenic |
| TTGAAATTTCTTCAATCCAA+AGG | 0.481678 | 2_1:+11588398 | Msa0194980:CDS |
| CAGAGACTTTGAAAGGTGTA+GGG | 0.502615 | 2_1:-11588442 | None:intergenic |
| ATTAATCTTCCTTTCCCATA+CGG | 0.515016 | 2_1:-11588168 | None:intergenic |
| TCAATTCCTGCTTCAAAATG+GGG | 0.519084 | 2_1:+11587983 | Msa0194980:CDS |
| GTCCAAAATCCGTATGGGAA+AGG | 0.543559 | 2_1:+11588159 | Msa0194980:CDS |
| ACTGCCTTCTCAAATACTGC+AGG | 0.547454 | 2_1:-11588065 | None:intergenic |
| AGATTAGTCCAAAATCCGTA+TGG | 0.549136 | 2_1:+11588153 | Msa0194980:CDS |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | 2_1:+11588241 | Msa0194980:CDS |
| ATGGTGTATGTTGGCATCTG+TGG | 0.563796 | 2_1:+11588250 | Msa0194980:CDS |
| TCAGAGACTTTGAAAGGTGT+AGG | 0.564549 | 2_1:-11588443 | None:intergenic |
| ATCTCTCATCAAAACTCGCA+CGG | 0.575191 | 2_1:+11587710 | Msa0194980:CDS |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | 2_1:-11587874 | None:intergenic |
| AATTTCAACGCAAAAGCCCT+AGG | 0.586081 | 2_1:-11588383 | None:intergenic |
| GATTAGTCCAAAATCCGTAT+GGG | 0.594092 | 2_1:+11588154 | Msa0194980:CDS |
| ATTAATGCGTATAAGAAATG+GGG | 0.599170 | 2_1:+11588185 | Msa0194980:CDS |
| TTGGGAATTAGAGAAACCAT+AGG | 0.600081 | 2_1:-11587682 | None:intergenic |
| GAAACCTGCAGTATTTGAGA+AGG | 0.606941 | 2_1:+11588061 | Msa0194980:CDS |
| GAGATATGTGAATTGCTATG+AGG | 0.610774 | 2_1:+11588481 | Msa0194980:CDS |
| AGATCCTCAGAGACTTTGAA+AGG | 0.621290 | 2_1:-11588449 | None:intergenic |
| ATGCGTATAAGAAATGGGGT+TGG | 0.624037 | 2_1:+11588189 | Msa0194980:CDS |
| AGAGACTTTGAAAGGTGTAG+GGG | 0.645255 | 2_1:-11588441 | None:intergenic |
| TACACCTTTCAAAGTCTCTG+AGG | 0.664130 | 2_1:+11588445 | Msa0194980:CDS |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | 2_1:-11588248 | None:intergenic |
| ACAAGAGCAATGTTTGAGAG+CGG | 0.676821 | 2_1:-11587928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_1:11587878-11587897 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | - | chr2_1:11587878-11587897 | None:intergenic | 15.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_1:11587770-11587789 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_1:11587877-11587896 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_1:11587879-11587898 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_1:11588011-11588030 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_1:11588018-11588037 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_1:11588021-11588040 | Msa0194980:CDS | 20.0% |
| !! | AAAGAAGGAAATTGAATTTA+GGG | - | chr2_1:11587770-11587789 | None:intergenic | 20.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | chr2_1:11587877-11587896 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | chr2_1:11587879-11587898 | None:intergenic | 20.0% |
| !!! | AAAAAAACAATTTTGGATTC+AGG | - | chr2_1:11588011-11588030 | None:intergenic | 20.0% |
| !!! | TCGAAACAAAAAAACAATTT+TGG | - | chr2_1:11588018-11588037 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTGTTTCGAAAT+TGG | + | chr2_1:11588021-11588040 | Msa0194980:CDS | 20.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_1:11587703-11587722 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_1:11587704-11587723 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_1:11587771-11587790 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_1:11587773-11587792 | Msa0194980:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_1:11587774-11587793 | Msa0194980:CDS | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | - | chr2_1:11587971-11587990 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | - | chr2_1:11587972-11587991 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_1:11588086-11588105 | Msa0194980:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_1:11588119-11588138 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_1:11588183-11588202 | Msa0194980:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_1:11588184-11588203 | Msa0194980:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_1:11588185-11588204 | Msa0194980:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_1:11588339-11588358 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_1:11588398-11588417 | Msa0194980:CDS | 25.0% |
| ! | TTTGATGAGAGATGATAATT+GGG | - | chr2_1:11587703-11587722 | None:intergenic | 25.0% |
| !! | TTTTGATGAGAGATGATAAT+TGG | - | chr2_1:11587704-11587723 | None:intergenic | 25.0% |
| ! | GAAAGAAGGAAATTGAATTT+AGG | - | chr2_1:11587771-11587790 | None:intergenic | 25.0% |
| ! | ATTCAATTTCCTTCTTTCTA+AGG | + | chr2_1:11587773-11587792 | Msa0194980:CDS | 25.0% |
| ! | TTCAATTTCCTTCTTTCTAA+GGG | + | chr2_1:11587774-11587793 | Msa0194980:CDS | 25.0% |
| !!! | GGAATTGAATATTTTGAGAT+GGG | - | chr2_1:11587971-11587990 | None:intergenic | 25.0% |
| !!! | AGGAATTGAATATTTTGAGA+TGG | - | chr2_1:11587972-11587991 | None:intergenic | 25.0% |
| !!! | GTTTTGGAAGTAAAACAATT+AGG | + | chr2_1:11588086-11588105 | Msa0194980:CDS | 25.0% |
| ! | ATAAGGAAAAACGTATTGTT+AGG | - | chr2_1:11588119-11588138 | None:intergenic | 25.0% |
| ! | AGATTAATGCGTATAAGAAA+TGG | + | chr2_1:11588183-11588202 | Msa0194980:CDS | 25.0% |
| ! | GATTAATGCGTATAAGAAAT+GGG | + | chr2_1:11588184-11588203 | Msa0194980:CDS | 25.0% |
| ! | ATTAATGCGTATAAGAAATG+GGG | + | chr2_1:11588185-11588204 | Msa0194980:CDS | 25.0% |
| !!! | CATAAGAAGTATTGGATATT+TGG | - | chr2_1:11588339-11588358 | None:intergenic | 25.0% |
| ! | TTGAAATTTCTTCAATCCAA+AGG | + | chr2_1:11588398-11588417 | Msa0194980:CDS | 25.0% |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | - | chr2_1:11587487-11587506 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | - | chr2_1:11587488-11587507 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_1:11587502-11587521 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_1:11587550-11587569 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_1:11587551-11587570 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_1:11587570-11587589 | Msa0194980:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_1:11587571-11587590 | Msa0194980:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_1:11587578-11587597 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | - | chr2_1:11587673-11587692 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_1:11587763-11587782 | None:intergenic | 30.0% | |
| ATTCAATTCCTGCTTCAAAA+TGG | + | chr2_1:11587981-11588000 | Msa0194980:CDS | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | + | chr2_1:11587982-11588001 | Msa0194980:CDS | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_1:11588171-11588190 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_1:11588293-11588312 | Msa0194980:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_1:11588347-11588366 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_1:11588346-11588365 | Msa0194980:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_1:11588354-11588373 | Msa0194980:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_1:11588355-11588374 | Msa0194980:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_1:11588409-11588428 | Msa0194980:CDS | 30.0% | |
| !!! | TATTGAGGTTTTGAATGAGA+GGG | - | chr2_1:11587487-11587506 | None:intergenic | 30.0% |
| !!! | TTATTGAGGTTTTGAATGAG+AGG | - | chr2_1:11587488-11587507 | None:intergenic | 30.0% |
| AAGAAGATGAAGAGTTATTG+AGG | - | chr2_1:11587502-11587521 | None:intergenic | 30.0% | |
| ! | GACTGTAAAAGAGTGATTTT+GGG | - | chr2_1:11587550-11587569 | None:intergenic | 30.0% |
| ! | TGACTGTAAAAGAGTGATTT+TGG | - | chr2_1:11587551-11587570 | None:intergenic | 30.0% |
| AACTACCTCATTCAAAATTG+TGG | + | chr2_1:11587570-11587589 | Msa0194980:CDS | 30.0% | |
| ACTACCTCATTCAAAATTGT+GGG | + | chr2_1:11587571-11587590 | Msa0194980:CDS | 30.0% | |
| ! | AAAACCCACAATTTTGAATG+AGG | - | chr2_1:11587578-11587597 | None:intergenic | 30.0% |
| GAAACCATAGGATTTGAATA+AGG | - | chr2_1:11587673-11587692 | None:intergenic | 30.0% | |
| GAAATTGAATTTAGGGAGAA+TGG | - | chr2_1:11587763-11587782 | None:intergenic | 30.0% | |
| ATTCAATTCCTGCTTCAAAA+TGG | + | chr2_1:11587981-11588000 | Msa0194980:CDS | 30.0% | |
| TTCAATTCCTGCTTCAAAAT+GGG | + | chr2_1:11587982-11588001 | Msa0194980:CDS | 30.0% | |
| ATTAATCTTCCTTTCCCATA+CGG | - | chr2_1:11588171-11588190 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTGTCAATCACAT+GGG | + | chr2_1:11588293-11588312 | Msa0194980:CDS | 30.0% |
| ! | AAACTCAGCATAAGAAGTAT+TGG | - | chr2_1:11588347-11588366 | None:intergenic | 30.0% |
| AATACTTCTTATGCTGAGTT+TGG | + | chr2_1:11588346-11588365 | Msa0194980:CDS | 30.0% | |
| TTATGCTGAGTTTGGAAAAA+AGG | + | chr2_1:11588354-11588373 | Msa0194980:CDS | 30.0% | |
| TATGCTGAGTTTGGAAAAAA+GGG | + | chr2_1:11588355-11588374 | Msa0194980:CDS | 30.0% | |
| TCAATCCAAAGGTTTGATTA+AGG | + | chr2_1:11588409-11588428 | Msa0194980:CDS | 30.0% | |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | - | chr2_1:11587486-11587505 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | + | chr2_1:11587666-11587685 | Msa0194980:CDS | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | - | chr2_1:11587685-11587704 | None:intergenic | 35.0% | |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_1:11587753-11587772 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_1:11587754-11587773 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | - | chr2_1:11587832-11587851 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | - | chr2_1:11587840-11587859 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | + | chr2_1:11587839-11587858 | Msa0194980:CDS | 35.0% | |
| GAGATGGGAATTTCGAATAA+AGG | - | chr2_1:11587956-11587975 | None:intergenic | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | + | chr2_1:11587983-11588002 | Msa0194980:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_1:11588070-11588089 | Msa0194980:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_1:11588153-11588172 | Msa0194980:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_1:11588154-11588173 | Msa0194980:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_1:11588231-11588250 | Msa0194980:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_1:11588292-11588311 | Msa0194980:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_1:11588297-11588316 | Msa0194980:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_1:11588298-11588317 | Msa0194980:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_1:11588366-11588385 | Msa0194980:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_1:11588367-11588386 | Msa0194980:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_1:11588417-11588436 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | + | chr2_1:11588481-11588500 | Msa0194980:CDS | 35.0% | |
| !!! | ATTGAGGTTTTGAATGAGAG+GGG | - | chr2_1:11587486-11587505 | None:intergenic | 35.0% |
| ! | ATCGCCTTATTCAAATCCTA+TGG | + | chr2_1:11587666-11587685 | Msa0194980:CDS | 35.0% |
| TTGGGAATTAGAGAAACCAT+AGG | - | chr2_1:11587685-11587704 | None:intergenic | 35.0% | |
| !!! | TTAGGGAGAATGGTTTTGTT+GGG | - | chr2_1:11587753-11587772 | None:intergenic | 35.0% |
| !!! | TTTAGGGAGAATGGTTTTGT+TGG | - | chr2_1:11587754-11587773 | None:intergenic | 35.0% |
| AGACAACATAAGAGGATTTC+TGG | - | chr2_1:11587832-11587851 | None:intergenic | 35.0% | |
| !! | AAGCTTTGAGACAACATAAG+AGG | - | chr2_1:11587840-11587859 | None:intergenic | 35.0% |
| TCTTATGTTGTCTCAAAGCT+TGG | + | chr2_1:11587839-11587858 | Msa0194980:CDS | 35.0% | |
| GAGATGGGAATTTCGAATAA+AGG | - | chr2_1:11587956-11587975 | None:intergenic | 35.0% | |
| TCAATTCCTGCTTCAAAATG+GGG | + | chr2_1:11587983-11588002 | Msa0194980:CDS | 35.0% | |
| ! | AGTATTTGAGAAGGCAGTTT+TGG | + | chr2_1:11588070-11588089 | Msa0194980:CDS | 35.0% |
| ! | AGATTAGTCCAAAATCCGTA+TGG | + | chr2_1:11588153-11588172 | Msa0194980:CDS | 35.0% |
| ! | GATTAGTCCAAAATCCGTAT+GGG | + | chr2_1:11588154-11588173 | Msa0194980:CDS | 35.0% |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | chr2_1:11588231-11588250 | Msa0194980:CDS | 35.0% |
| !!! | GCAGTTTTTTGTCAATCACA+TGG | + | chr2_1:11588292-11588311 | Msa0194980:CDS | 35.0% |
| ! | TTTTTGTCAATCACATGGGT+TGG | + | chr2_1:11588297-11588316 | Msa0194980:CDS | 35.0% |
| ! | TTTTGTCAATCACATGGGTT+GGG | + | chr2_1:11588298-11588317 | Msa0194980:CDS | 35.0% |
| TGGAAAAAAGGGTTATTCCT+AGG | + | chr2_1:11588366-11588385 | Msa0194980:CDS | 35.0% | |
| GGAAAAAAGGGTTATTCCTA+GGG | + | chr2_1:11588367-11588386 | Msa0194980:CDS | 35.0% | |
| AGCATCCTTAATCAAACCTT+TGG | - | chr2_1:11588417-11588436 | None:intergenic | 35.0% | |
| GAGATATGTGAATTGCTATG+AGG | + | chr2_1:11588481-11588500 | Msa0194980:CDS | 35.0% | |
| ! | TTTTGAATGAGAGGGGGTTA+GGG | - | chr2_1:11587479-11587498 | None:intergenic | 40.0% |
| !!! | TTGAGGTTTTGAATGAGAGG+GGG | - | chr2_1:11587485-11587504 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_1:11587603-11587622 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_1:11587657-11587676 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_1:11587710-11587729 | Msa0194980:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_1:11587785-11587804 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | - | chr2_1:11587931-11587950 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_1:11588061-11588080 | Msa0194980:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_1:11588164-11588183 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_1:11588189-11588208 | Msa0194980:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_1:11588241-11588260 | Msa0194980:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_1:11588386-11588405 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_1:11588444-11588463 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_1:11588445-11588464 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_1:11588446-11588465 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_1:11588445-11588464 | Msa0194980:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_1:11588452-11588471 | None:intergenic | 40.0% | |
| ! | TTTTGAATGAGAGGGGGTTA+GGG | - | chr2_1:11587479-11587498 | None:intergenic | 40.0% |
| !!! | TTGAGGTTTTGAATGAGAGG+GGG | - | chr2_1:11587485-11587504 | None:intergenic | 40.0% |
| GAGAGTTTAGAAGCAGTTTC+TGG | - | chr2_1:11587603-11587622 | None:intergenic | 40.0% | |
| AATAAGGCGATGACTGAATC+AGG | - | chr2_1:11587657-11587676 | None:intergenic | 40.0% | |
| ATCTCTCATCAAAACTCGCA+CGG | + | chr2_1:11587710-11587729 | Msa0194980:CDS | 40.0% | |
| ! | TTGAAGCACCCTTAGAAAGA+AGG | - | chr2_1:11587785-11587804 | None:intergenic | 40.0% |
| ACAAGAGCAATGTTTGAGAG+CGG | - | chr2_1:11587931-11587950 | None:intergenic | 40.0% | |
| GAAACCTGCAGTATTTGAGA+AGG | + | chr2_1:11588061-11588080 | Msa0194980:CDS | 40.0% | |
| ! | TTCCTTTCCCATACGGATTT+TGG | - | chr2_1:11588164-11588183 | None:intergenic | 40.0% |
| ATGCGTATAAGAAATGGGGT+TGG | + | chr2_1:11588189-11588208 | Msa0194980:CDS | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | chr2_1:11588241-11588260 | Msa0194980:CDS | 40.0% |
| AATTTCAACGCAAAAGCCCT+AGG | - | chr2_1:11588386-11588405 | None:intergenic | 40.0% | |
| ! | AGAGACTTTGAAAGGTGTAG+GGG | - | chr2_1:11588444-11588463 | None:intergenic | 40.0% |
| ! | CAGAGACTTTGAAAGGTGTA+GGG | - | chr2_1:11588445-11588464 | None:intergenic | 40.0% |
| ! | TCAGAGACTTTGAAAGGTGT+AGG | - | chr2_1:11588446-11588465 | None:intergenic | 40.0% |
| TACACCTTTCAAAGTCTCTG+AGG | + | chr2_1:11588445-11588464 | Msa0194980:CDS | 40.0% | |
| AGATCCTCAGAGACTTTGAA+AGG | - | chr2_1:11588452-11588471 | None:intergenic | 40.0% | |
| !! | GTTTTGAATGAGAGGGGGTT+AGG | - | chr2_1:11587480-11587499 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_1:11588068-11588087 | None:intergenic | 45.0% | |
| TCTTAGCATGTAGCGCGATA+AGG | - | chr2_1:11588136-11588155 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_1:11588159-11588178 | Msa0194980:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_1:11588251-11588270 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_1:11588250-11588269 | Msa0194980:CDS | 45.0% | |
| !! | GTTTTGAATGAGAGGGGGTT+AGG | - | chr2_1:11587480-11587499 | None:intergenic | 45.0% |
| ACTGCCTTCTCAAATACTGC+AGG | - | chr2_1:11588068-11588087 | None:intergenic | 45.0% | |
| TCTTAGCATGTAGCGCGATA+AGG | - | chr2_1:11588136-11588155 | None:intergenic | 45.0% | |
| GTCCAAAATCCGTATGGGAA+AGG | + | chr2_1:11588159-11588178 | Msa0194980:CDS | 45.0% | |
| ACAGATGCCAACATACACCA+TGG | - | chr2_1:11588251-11588270 | None:intergenic | 45.0% | |
| ATGGTGTATGTTGGCATCTG+TGG | + | chr2_1:11588250-11588269 | Msa0194980:CDS | 45.0% | |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_1:11587992-11588011 | None:intergenic | 50.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | chr2_1:11587992-11588011 | None:intergenic | 50.0% |
| AGGGGGTTAGGGCAGAGTAC+TGG | - | chr2_1:11587468-11587487 | None:intergenic | 60.0% | |
| AGGGGGTTAGGGCAGAGTAC+TGG | - | chr2_1:11587468-11587487 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11587444 | 11588565 | 11587444 | ID=Msa0194980;Name=Msa0194980 |
| chr2_1 | mRNA | 11587444 | 11588565 | 11587444 | ID=Msa0194980-mRNA-1;Parent=Msa0194980;Name=Msa0194980-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|373 |
| chr2_1 | exon | 11587444 | 11588565 | 11587444 | ID=Msa0194980-mRNA-1:exon:5139;Parent=Msa0194980-mRNA-1 |
| chr2_1 | CDS | 11587444 | 11588565 | 11587444 | ID=Msa0194980-mRNA-1:cds;Parent=Msa0194980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
