AlfalfaGEDB | Msa0195200

M. sativa cultivar zhongmu-4 / Msa0195200

KEGG: K14404
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010363 GO:0010467 GO:0010468 GO:0010646 GO:0010941 GO:0010942 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0023051 GO:0031123 GO:0031124 GO:0031323 GO:0031347 GO:0031349 GO:0031440 GO:0031974 GO:0031981 GO:0032991 GO:0034052 GO:0034641 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050684 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1900363 GO:1901360 GO:1901363 GO:1903311 GO:2000031 GO:2001023 GO:2001038
PFAM: PF18345.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195200	XP_013463003.1	92.340	718	20	1	1	718	1	683	0.0	1356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195200	sp\|A9LNK9\|CPSF_ARATH	58.587	722	201	17	1	715	1	631	0.0	648

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195200	A0A072V6R5	92.340	718	20	1	1	718	1	683	0.0	1356

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TFs/TRs:

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Gene ID	Type	Classification
Msa0195200	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195200	MtrunA17_Chr2g0292081	92.340	718	20	1	1	718	1	683	0.0	1356
Msa0195200	MtrunA17_Chr7g0253191	29.710	138	91	2	294	429	431	564	3.70e-12	69.7
Msa0195200	MtrunA17_Chr4g0000071	26.316	152	101	3	294	438	395	542	4.66e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195200	AT1G30460.1	58.587	722	201	17	1	715	1	631	0.0	648
Msa0195200	AT1G30460.2	62.031	453	105	9	1	448	1	391	3.65e-171	496
Msa0195200	AT1G30460.3	50.166	301	83	9	1	296	1	239	1.26e-67	223
Msa0195200	AT4G11970.2	50.667	150	70	3	281	429	61	207	1.07e-34	136
Msa0195200	AT4G11970.5	50.667	150	70	3	281	429	61	207	1.24e-34	136
Msa0195200	AT4G11970.3	50.667	150	70	3	281	429	61	207	2.93e-34	135
Msa0195200	AT4G11970.1	50.667	150	70	3	281	429	61	207	4.74e-33	133
Msa0195200	AT4G11970.4	50.667	150	70	3	281	429	61	207	4.74e-33	133
Msa0195200	AT4G11970.6	52.294	109	50	2	322	429	2	109	1.63e-22	99.0
Msa0195200	AT4G11970.7	52.294	109	50	2	322	429	2	109	1.69e-22	98.2

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Find 252 sgRNAs with CRISPR-Local

Find 861 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCCATACTAGTCAG+TGG	0.638713	2_1:+11980107	None:intergenic
AAACCATTAGTTACAGAGTC+AGG	0.456574	2_1:-11986953	Msa0195200:CDS
AAAGTGAAGATGAGGCACCT+AGG	0.663202	2_1:-11980237	Msa0195200:CDS
AAATGAAGCATTCGACTCTG+TGG	0.611269	2_1:-11985723	Msa0195200:CDS
AACAGATGGAGTCGCGGTTG+CGG	0.476724	2_1:+11990431	None:intergenic
AACATCGGAGGCATATTGAC+TGG	0.571438	2_1:+11980466	None:intergenic
AACCAAATGGAGGATTCCGA+AGG	0.651266	2_1:-11990582	Msa0195200:exon
AACCCTGGGATGTTTCCCGG+TGG	0.692839	2_1:-11980577	Msa0195200:CDS
AAGACATGCTCAGTCAAAGT+GGG	0.562941	2_1:-11980333	Msa0195200:CDS
AAGATGACATCCAGAATTGG+TGG	0.629196	2_1:-11984326	Msa0195200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAAGAGGAGAAAAAAGA+GGG	+	chr2_1:11979944-11979963	None:intergenic	30.0%
ATTTGAAGAGGAGAAAAAAG+AGG	+	chr2_1:11979945-11979964	None:intergenic	30.0%
TGAAGGGAAAATATTTGAAG+AGG	+	chr2_1:11979957-11979976	None:intergenic	30.0%
GCATACTAATGATGATATCA+AGG	-	chr2_1:11980367-11980386	Msa0195200:CDS	30.0%
TATGTAACAACTTAAGAGCA+TGG	+	chr2_1:11980631-11980650	None:intergenic	30.0%
TACTTCTATAAGAGTCTGTT+TGG	-	chr2_1:11980649-11980668	Msa0195200:CDS	30.0%
TATCATTCATAAGCTTGTCA+AGG	-	chr2_1:11980728-11980747	Msa0195200:CDS	30.0%
AAAAATAAGCCAATCCAAAC+AGG	-	chr2_1:11980855-11980874	Msa0195200:CDS	30.0%
ACAAGCAATGTGTAATTATG+CGG	+	chr2_1:11980894-11980913	None:intergenic	30.0%
TGTTTCGGAGTTAGTATATT+AGG	-	chr2_1:11980986-11981005	Msa0195200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	11979863	11990743	11979863	ID=Msa0195200;Name=Msa0195200
chr2_1	mRNA	11979863	11990743	11979863	ID=Msa0195200-mRNA-1;Parent=Msa0195200;Name=Msa0195200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=145\|0.62\|0.77\|0.77\|1\|1\|9\|329\|718
chr2_1	exon	11979863	11981034	11979863	ID=Msa0195200-mRNA-1:exon:5249;Parent=Msa0195200-mRNA-1
chr2_1	exon	11981381	11981467	11981381	ID=Msa0195200-mRNA-1:exon:5248;Parent=Msa0195200-mRNA-1
chr2_1	exon	11982891	11982959	11982891	ID=Msa0195200-mRNA-1:exon:5247;Parent=Msa0195200-mRNA-1
chr2_1	exon	11984247	11984357	11984247	ID=Msa0195200-mRNA-1:exon:5246;Parent=Msa0195200-mRNA-1
chr2_1	exon	11985676	11985838	11985676	ID=Msa0195200-mRNA-1:exon:5245;Parent=Msa0195200-mRNA-1
chr2_1	exon	11986821	11987207	11986821	ID=Msa0195200-mRNA-1:exon:5244;Parent=Msa0195200-mRNA-1
chr2_1	exon	11987535	11987572	11987535	ID=Msa0195200-mRNA-1:exon:5243;Parent=Msa0195200-mRNA-1
chr2_1	exon	11987669	11987735	11987669	ID=Msa0195200-mRNA-1:exon:5242;Parent=Msa0195200-mRNA-1
chr2_1	exon	11990207	11990743	11990207	ID=Msa0195200-mRNA-1:exon:5241;Parent=Msa0195200-mRNA-1
chr2_1	five_prime_UTR	11990599	11990743	11990599	ID=Msa0195200-mRNA-1:five_prime_utr;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11990207	11990598	11990207	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11987669	11987735	11987669	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11987535	11987572	11987535	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11986821	11987207	11986821	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11985676	11985838	11985676	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11984247	11984357	11984247	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11982891	11982959	11982891	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11981381	11981467	11981381	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	CDS	11980192	11981034	11980192	ID=Msa0195200-mRNA-1:cds;Parent=Msa0195200-mRNA-1
chr2_1	three_prime_UTR	11979863	11980191	11979863	ID=Msa0195200-mRNA-1:three_prime_utr;Parent=Msa0195200-mRNA-1

Gene Sequence

>Msa0195200

ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAGGGCGGTCTCGACGCACAACCTTCCGCCGCCACTGCAATCACCTCCACCGCCGCCGTCTCCACCCCGATCGTCCAATCCGATTCCTACTTACCACCTTCCAATGGAGCCGCAACCGCGACTCCATCTGTTGCTGAACATACTCCCGGTAATGCTCCCGGTCGACGAAGCTTCCGGCAAACGGTGTGTCGTCACTGGCTAAGGAGTTTGTGTATGAAAGGTGAAGCGTGTGGGTTTTTGCATCAGTATGATAAAGCGAGAATGCCGATTTGTCGGTTTTTTAGATTGTATGGAGAATGTCGTGAACAGGATTGTGTTTATAAGCATACTAATGATGATATCAAGGAGTGTAACATTGGGTTGGCTATAACTGTTGGTGGAGCTTCACGACTAACTTCAGGGGTTTTGGGAGATGAAATATGGTATATCATCACTTCTTGGCATCATGTAATGATGTTCTGGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCTCCTCCAATTGAAGAGGTTCTTCAAAAGATCCAACATTTATATTCTTACAATTACAACAACTCTCACAAGTTTAACCAACAAAGGGGTTCTAACTATAATCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGCGGTTGGAAAACCATTAGTTACAGAGTCAGGAAATGGCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAAGTCAGCCATAACCAAGTGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATCGAACATCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAACTTGGAGTTGTCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTCGACTCTGTGGAAAACGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGACGTAATTTCTCTGTTAAGTGGTTGAAGTTATGTGAACTATCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAGAACTTACCGGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATCGGTGAGCAGTTGGCATCCTTGCTATATACTGAGCCAGATAGTGAACTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCAAGCTGTAGGGCCAGCTGTTCAAGGAAGAGGTAGGGGCAGAGGAGGTATGATGTGGCCCCCTCACATGCATCTTGGGCGTGGAGCAAGACCGATCCATGGAATGCAAAATTTCAATCCTCTGATGGGCGATGGATTATCCTACGGACCTGGTGGACCCGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATATGGTCCTAGGTTCGGTGGTGATTTTGGGGGTCCCCCAGCTGGCATGATGTTCCGAGGTCGACCCTCAAACCCTGGGATGTTTCCCGGTGGTGGATTTGGGATGATGATGAATCCTGGACGCGGTCCTTTTATGGGGGGAATGGGGGTTCCAGGTCCGAACGCACCAAGAGGTGGTAGGCCAGTCAATATGCCTCCGATGTTTCCACCACCTCCACCTCCACCACAAAATATGAACCGCACTGGCAAAAGAGATCAAAGACCAAGTGATCGGAATGATAGGTATAGTTCAGGACCAGATCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAGCAAGGATACAACAAGTCACAGCAAGATGATCGGAATGACGATAGTGAAAGTGAAGATGAGGCACCTAGGCGGTCAAGACACGGAGAGGGAAAAAAAAGAAAAGGAGAATCTTAG

Protein sequence

>Msa0195200

MEDSEGVLNFDFEGGLDAQPSAATAITSTAAVSTPIVQSDSYLPPSNGAATATPSVAEHTPGNAPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNDDIKECNIGLAITVGGASRLTSGVLGDEIWYIITSWHHVMMFWYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNSHKFNQQRGSNYNQQVEKSQFPQGINSANQGAVGKPLVTESGNGQQQQQVQQSQQQVSHNQVQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGQAVGPAVQGRGRGRGGMMWPPHMHLGRGARPIHGMQNFNPLMGDGLSYGPGGPDGFGMPDLFGMGPRGFGPYGPRFGGDFGGPPAGMMFRGRPSNPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNAPRGGRPVNMPPMFPPPPPPPQNMNRTGKRDQRPSDRNDRYSSGPDQGKSQDMLSQSGGPDDDMQYQQGYNKSQQDDRNDDSESEDEAPRRSRHGEGKKRKGES*