AlfalfaGEDB | Msa0195910

M. sativa cultivar zhongmu-4 / Msa0195910

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195910	XP_003594097.1	99.113	564	5	0	1	564	1	564	0.0	1167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195910	sp\|Q8W4J2\|MPK16_ARATH	80.208	576	93	8	1	564	1	567	0.0	932

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195910	G7IKE2	99.113	564	5	0	1	564	1	564	0.0	1167

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195910	MtrunA17_Chr2g0287271	99.113	564	5	0	1	564	1	564	0.0	1167
Msa0195910	MtrunA17_Chr4g0065851	84.737	570	73	6	1	563	1	563	0.0	984
Msa0195910	MtrunA17_Chr3g0096631	70.888	529	146	7	1	529	1	521	0.0	737
Msa0195910	MtrunA17_Chr8g0392811	79.187	418	85	2	2	418	94	510	0.0	721
Msa0195910	MtrunA17_Chr6g0482681	79.118	431	87	2	2	430	66	495	0.0	708
Msa0195910	MtrunA17_Chr8g0359091	67.327	505	144	5	5	502	6	496	0.0	684
Msa0195910	MtrunA17_Chr2g0314321	67.258	507	138	5	1	487	1	499	0.0	679
Msa0195910	MtrunA17_Chr5g0443351	67.200	500	147	4	5	504	2	484	0.0	678
Msa0195910	MtrunA17_Chr4g0045841	52.108	332	151	4	31	362	61	384	3.38e-119	357
Msa0195910	MtrunA17_Chr4g0030151	50.301	332	158	3	31	362	45	369	3.86e-116	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0195910	AT5G19010.1	80.208	576	93	8	1	564	1	567	932
Msa0195910	AT2G42880.1	70.736	516	138	6	1	514	1	505	726
Msa0195910	AT3G18040.4	82.892	415	70	1	4	418	111	524	722
Msa0195910	AT3G18040.3	82.892	415	70	1	4	418	111	524	721
Msa0195910	AT2G42880.2	81.710	421	76	1	1	421	1	420	721
Msa0195910	AT3G18040.1	82.892	415	70	1	4	418	2	415	719
Msa0195910	AT3G18040.5	83.374	409	67	1	10	418	3	410	715
Msa0195910	AT1G73670.1	75.870	431	101	2	7	437	72	499	708
Msa0195910	AT3G14720.1	63.815	561	182	9	1	556	1	545	691
Msa0195910	AT1G18150.3	76.744	430	93	2	12	437	91	517	688

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Find 166 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTATGTGCCATGA+TGG	0.587012	2_1:-12865954	Msa0195910:three_prime_UTR
AAAAGACAGGAACACGTACT+AGG	0.510916	2_1:+12872016	None:intergenic
AAAATACATTAACTTTGTAA+TGG	0.435167	2_1:+12865642	None:intergenic
AAAGTTGCTGCTGCTCAAGG+CGG	0.665749	2_1:-12866034	Msa0195910:CDS
AAATTGAAGATTTGCGACTT+TGG	0.405562	2_1:-12870327	Msa0195910:CDS
AAATTGCACCTTGGAGAAAA+AGG	0.297546	2_1:+12870122	None:intergenic
AACACGCTTCTTCACTGCCC+AGG	0.574165	2_1:-12866705	Msa0195910:intron
AACAGGATTATGTTGCAACG+AGG	0.769892	2_1:-12870173	Msa0195910:intron
AACTGGAAGTGTGACCTGGG+CGG	0.722380	2_1:-12865799	Msa0195910:three_prime_UTR
AACTTCTTTGATGCAACATT+TGG	0.293248	2_1:+12866468	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAAAACACCAAGTAT+CGG	+	chr2_1:12865579-12865598	None:intergenic	30.0%
TCGAAATGTGTCTTGAAAAT+TGG	+	chr2_1:12865609-12865628	None:intergenic	30.0%
GTAAAAGAAAAAACAGTTCC+AGG	+	chr2_1:12866131-12866150	None:intergenic	30.0%
TTAACAAAGTACACTTTAGG+AGG	+	chr2_1:12866471-12866490	None:intergenic	30.0%
TGTTAATGTAAGAGATAGAG+AGG	-	chr2_1:12866485-12866504	Msa0195910:CDS	30.0%
GTTAATGTAAGAGATAGAGA+GGG	-	chr2_1:12866486-12866505	Msa0195910:CDS	30.0%
GCACACTATTTAACAAACAA+AGG	+	chr2_1:12866748-12866767	None:intergenic	30.0%
TACAAAATAGAGGAAGTGAT+TGG	-	chr2_1:12866834-12866853	Msa0195910:intron	30.0%
TCTTTGAATTCTCTTCTTGA+AGG	+	chr2_1:12867044-12867063	None:intergenic	30.0%
AAATTGAAGATTTGCGACTT+TGG	-	chr2_1:12867370-12867389	Msa0195910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	12865532	12872187	12865532	ID=Msa0195910;Name=Msa0195910
chr2_1	mRNA	12865532	12872187	12865532	ID=Msa0195910-mRNA-1;Parent=Msa0195910;Name=Msa0195910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=409\|1\|1\|1\|0.9\|0.81\|11\|460\|564
chr2_1	exon	12865532	12865617	12865532	ID=Msa0195910-mRNA-1:exon:5604;Parent=Msa0195910-mRNA-1
chr2_1	exon	12865638	12866298	12865638	ID=Msa0195910-mRNA-1:exon:5603;Parent=Msa0195910-mRNA-1
chr2_1	exon	12866389	12866552	12866389	ID=Msa0195910-mRNA-1:exon:5602;Parent=Msa0195910-mRNA-1
chr2_1	exon	12866706	12866810	12866706	ID=Msa0195910-mRNA-1:exon:5601;Parent=Msa0195910-mRNA-1
chr2_1	exon	12868030	12868241	12868030	ID=Msa0195910-mRNA-1:exon:5600;Parent=Msa0195910-mRNA-1
chr2_1	exon	12868337	12868492	12868337	ID=Msa0195910-mRNA-1:exon:5599;Parent=Msa0195910-mRNA-1
chr2_1	exon	12868575	12868724	12868575	ID=Msa0195910-mRNA-1:exon:5598;Parent=Msa0195910-mRNA-1
chr2_1	exon	12870131	12870190	12870131	ID=Msa0195910-mRNA-1:exon:5597;Parent=Msa0195910-mRNA-1
chr2_1	exon	12870278	12870405	12870278	ID=Msa0195910-mRNA-1:exon:5596;Parent=Msa0195910-mRNA-1
chr2_1	exon	12870525	12870933	12870525	ID=Msa0195910-mRNA-1:exon:5595;Parent=Msa0195910-mRNA-1
chr2_1	exon	12871755	12872187	12871755	ID=Msa0195910-mRNA-1:exon:5594;Parent=Msa0195910-mRNA-1
chr2_1	five_prime_UTR	12871779	12872187	12871779	ID=Msa0195910-mRNA-1:five_prime_utr;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12871755	12871778	12871755	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12870525	12870933	12870525	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12870278	12870405	12870278	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12870131	12870190	12870131	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12868575	12868724	12868575	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12868337	12868492	12868337	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12868030	12868241	12868030	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12866706	12866810	12866706	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12866389	12866552	12866389	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	CDS	12866012	12866298	12866012	ID=Msa0195910-mRNA-1:cds;Parent=Msa0195910-mRNA-1
chr2_1	three_prime_UTR	12865638	12866011	12865638	ID=Msa0195910-mRNA-1:three_prime_utr;Parent=Msa0195910-mRNA-1
chr2_1	three_prime_UTR	12865532	12865617	12865532	ID=Msa0195910-mRNA-1:three_prime_utr;Parent=Msa0195910-mRNA-1

Gene Sequence

>Msa0195910

ATGAGTCATGATCAGAGAAAAAAGTCATCTGTGGATGTAGATTTCTTTACCGAGTATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCAGCATACGATACACACACTGGAGAAAAGGTTGCTATAAAGAAAATCAATGACATATTTGAACATGTATCTGATGCCACTCGCATTCTTCGCGAGATTAAGCTTCTTAGACTTTTACGCCATCCGGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCAAGAAGAGAATTCAAAGATATATATGTTGTATTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTGACACCAGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCGAAAAACATTTTGGCGAATGCTGACTGCAAATTGAAGATTTGCGACTTTGGTCTTGCCCGAGTAGCTTTTAATGATACACCCACTGCTATATTCTGGACAGATTATGTTGCAACGAGGTGGTATAGAGCTCCCGAATTGTGTGGGTCCTTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATCGGTTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTCCATCAGCTGGATATCATGACTGATTTTCTTGGAACACCATCTCCTGATGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCCAATTCCTTTCTCACACAAATTTCCTAATGCAGATCCCCTTGCTCTTCAGCTGTTAGAAAGAATGCTGGCATTTGAGGCTAAGGATCGGCCTACTGCTGAAGAGGCCCTAGCAGATCCATATTTCAAAGGATTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGACGGAGGATAACAAAGGAAGATGTACGAGAGCTTATATACCGCGAAATATTGGAATACCATCCGAAGATGTTAAAGGAGTTTCTAGAGGGAGCAGAGCCAACAGGTTTCATGTATCCAAGTGCTGTGGACCTTTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGCAAAGGAGGAACTGTTGCTCCACCTGAGAGGCAACACGCTTCTTCACTGCCCAGAGCGTGTGTGTTGTATTCTGATAACACGATGCAGAATACGGCTGAGGTTGCTGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAGACCAGCTGTAGATAGGAGTAGCGATATTCAGCCGATGACCCGGATTCCATTACAAGCTCCTCAAAATATGCAAGGTCTTGCTGCAAGGCCTGGAAAAGTTGTTGGTTCTGCAATGCGTTACAACAACTGTGGGGCGGCAGTGACAGCAGAAACCGAACAGCGGAGGGTGGTTAGGAATCCACCCGTTTCATCTCAGTATGCTGCTTCGAGCTGTTCGTATCCCAGGAGAAATCCAAACTATAAAAGTGAAAGGGTAGAAGATGATGTGATTGAAGGTTCAAATGGGCTGCAGCCAAAGCCTCAATACATAGCAAGAAAAGTTGCTGCTGCTCAAGGCGGAGCTGGTGGTCAGTGGTATTGA

Protein sequence

>Msa0195910

MSHDQRKKSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKKPIPFSHKFPNADPLALQLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMQNTAEVADDLSKCCIKEVERPAVDRSSDIQPMTRIPLQAPQNMQGLAARPGKVVGSAMRYNNCGAAVTAETEQRRVVRNPPVSSQYAASSCSYPRRNPNYKSERVEDDVIEGSNGLQPKPQYIARKVAAAQGGAGGQWY*