AlfalfaGEDB | Msa0195930

M. sativa cultivar zhongmu-4 / Msa0195930

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195930	XP_039686069.1	57.857	280	59	7	1	228	1	273	6.68e-86	290
Msa0195930	XP_039686069.1	92.669	341	25	0	170	510	382	722	0.0	659

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195930	sp\|Q9LIE5\|FHY3_ARATH	43.293	328	170	3	115	442	372	683	1.27e-85	285
Msa0195930	sp\|Q9LIE5\|FHY3_ARATH	33.333	177	83	3	32	173	69	245	5.68e-20	97.4

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195930	A0A2K3NGL2	55.204	221	51	3	1	173	1	221	2.17e-61	224
Msa0195930	A0A2K3NGL2	73.633	311	79	2	170	479	390	698	5.95e-163	488

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0195930	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195930	MtrunA17_Chr2g0329031	43.202	331	170	4	170	485	358	685	3.49e-89	289
Msa0195930	MtrunA17_Chr2g0329031	35.165	182	83	3	27	173	8	189	5.53e-20	93.6
Msa0195930	MtrunA17_Chr1g0207551	47.712	306	158	1	137	442	352	655	1.28e-83	276
Msa0195930	MtrunA17_Chr1g0207551	32.394	213	96	5	7	173	6	216	2.99e-23	103
Msa0195930	MtrunA17_Chr3g0080351	49.077	271	136	1	172	442	421	689	5.48e-80	266
Msa0195930	MtrunA17_Chr3g0080351	36.158	177	77	4	32	173	75	250	3.19e-22	100
Msa0195930	MtrunA17_Chr5g0448761	37.687	268	160	3	181	441	428	695	1.37e-56	202
Msa0195930	MtrunA17_Chr5g0448511	35.357	280	170	3	182	450	202	481	2.28e-54	192
Msa0195930	MtrunA17_Chr2g0291581	39.560	273	143	6	173	429	412	678	1.48e-52	189
Msa0195930	MtrunA17_Chr2g0291581	26.882	186	102	3	33	184	71	256	4.72e-11	65.5

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195930	AT3G22170.2	43.293	328	170	3	115	442	372	683	1.29e-86	285
Msa0195930	AT3G22170.2	33.333	177	83	3	32	173	69	245	5.78e-21	97.4
Msa0195930	AT3G22170.1	43.293	328	170	3	115	442	372	683	1.29e-86	285
Msa0195930	AT3G22170.1	33.333	177	83	3	32	173	69	245	5.78e-21	97.4
Msa0195930	AT4G15090.1	47.636	275	142	1	170	444	405	677	4.82e-85	280
Msa0195930	AT4G15090.1	35.385	195	77	5	21	170	43	233	3.52e-24	107
Msa0195930	AT4G15090.5	47.636	275	142	1	170	444	405	677	4.82e-85	280
Msa0195930	AT4G15090.5	35.385	195	77	5	21	170	43	233	3.52e-24	107
Msa0195930	AT4G15090.3	47.636	275	142	1	170	444	405	677	4.82e-85	280
Msa0195930	AT4G15090.3	35.385	195	77	5	21	170	43	233	3.52e-24	107

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

Find 78 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCCAGAAAATAGC+AGG	0.528595	2_1:-12886782	Msa0195930:CDS
AAAGATACCACTATATTGGA+TGG	0.565802	2_1:+12887037	None:intergenic
AAAGTATCTTTCATGTAAAC+AGG	0.390769	2_1:+12887500	None:intergenic
AAAGTTCCAAGTTGAAATTA+CGG	0.393399	2_1:-12887240	Msa0195930:CDS
AAATATGCTTGCACACGATA+TGG	0.308453	2_1:-12888497	Msa0195930:CDS
AAATCCACGTCCTTGTTTGA+AGG	0.523815	2_1:-12888452	Msa0195930:CDS
AACATATGATTCATTATTGA+CGG	0.433811	2_1:+12888685	None:intergenic
AACTATCAGACTTAGAGGAT+GGG	0.570196	2_1:-12887562	Msa0195930:CDS
AAGCAAAATTTATGCCACAA+TGG	0.623748	2_1:-12888245	Msa0195930:CDS
AAGGAATGCACATTGTTTCA+AGG	0.460676	2_1:+12886818	None:intergenic

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGAAAATAATGTGCATATGT+TGG	+	chr2_1:12886742-12886761	None:intergenic	30.0%
ATTGAAACTTTGCAACATGT+TGG	-	chr2_1:12886799-12886818	Msa0195930:CDS	30.0%
AAGCAAAATTTATGCCACAA+TGG	-	chr2_1:12886831-12886850	Msa0195930:CDS	30.0%
CAGATTCTAAATTCAAACGA+CGG	+	chr2_1:12886927-12886946	None:intergenic	30.0%
AGAGATGATTATCAAGTGTT+TGG	-	chr2_1:12887072-12887091	Msa0195930:CDS	30.0%
TGATTATTCACACCAATGAA+TGG	+	chr2_1:12887156-12887175	None:intergenic	30.0%
TCTTTGGCATATACTTAGAA+AGG	-	chr2_1:12887362-12887381	Msa0195930:CDS	30.0%
ATTTCAACTATCAGACTTAG+AGG	-	chr2_1:12887509-12887528	Msa0195930:CDS	30.0%
ATTGACATTTGCTTCTCAAA+AGG	+	chr2_1:12887792-12887811	None:intergenic	30.0%
ATAATCCCGTAATTTCAACT+TGG	+	chr2_1:12887845-12887864	None:intergenic	30.0%

Showing 1 to 10 of 316 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	12886348	12888750	12886348	ID=Msa0195930;Name=Msa0195930
chr2_1	mRNA	12886348	12888750	12886348	ID=Msa0195930-mRNA-1;Parent=Msa0195930;Name=Msa0195930-mRNA-1;_AED=0.43;_eAED=0.52;_QI=0\|0\|0\|0.6\|1\|0.8\|5\|0\|519
chr2_1	exon	12888446	12888750	12888446	ID=Msa0195930-mRNA-1:exon:5665;Parent=Msa0195930-mRNA-1
chr2_1	exon	12888119	12888327	12888119	ID=Msa0195930-mRNA-1:exon:5664;Parent=Msa0195930-mRNA-1
chr2_1	exon	12886656	12887602	12886656	ID=Msa0195930-mRNA-1:exon:5663;Parent=Msa0195930-mRNA-1
chr2_1	exon	12886491	12886556	12886491	ID=Msa0195930-mRNA-1:exon:5662;Parent=Msa0195930-mRNA-1
chr2_1	exon	12886348	12886380	12886348	ID=Msa0195930-mRNA-1:exon:5661;Parent=Msa0195930-mRNA-1
chr2_1	CDS	12888446	12888750	12888446	ID=Msa0195930-mRNA-1:cds;Parent=Msa0195930-mRNA-1
chr2_1	CDS	12888119	12888327	12888119	ID=Msa0195930-mRNA-1:cds;Parent=Msa0195930-mRNA-1
chr2_1	CDS	12886656	12887602	12886656	ID=Msa0195930-mRNA-1:cds;Parent=Msa0195930-mRNA-1
chr2_1	CDS	12886491	12886556	12886491	ID=Msa0195930-mRNA-1:cds;Parent=Msa0195930-mRNA-1
chr2_1	CDS	12886348	12886380	12886348	ID=Msa0195930-mRNA-1:cds;Parent=Msa0195930-mRNA-1

Gene Sequence

>Msa0195930

ATGGAACCCATTGATGAAAATGAAGAACATGTTATAAATGAGACCGTCAATAATGAATCATATGTTGGTGATTTAGAGGCTAACAATGTTCAACAACCTTCTCTTGGAATGGAATTTGAGTCACAAGAAGATGCTTATTCTTTCTATGTTCAATATGCTAAAAGTGTCGGATTTGGTGTATCCATTAAAAGTAGTCGCCGTTCAAAAATTTCTAGAGAATTTATTGATGTGAAATATGCTTGCACACGATATGGGAAAGAGAGAGTCGACCGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATAACCATCAATAAAGCTCAGCAGAATTGTATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGCAAAATTTATGCCACAATGGCCAAACAACACGGAGGATATGAGAAAGTTGGTTGCTTGGAGAAAGATGTTAGAAATTATTTAGATAAGGACCGTCGTTTGAATTTAGAATCTGGAGATGCAAATGCAATGCTGGAGTATTTTATGCAAATGGTAGTGAAATTTCAACTATCAGACTTAGAGGATGGGTGGATTCAGTCTTTATATGAAGAACGTAAACATTGGGTTCCTGTTTACATGAAAGATACTTTTTTCGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCTTTTTTTGACAAATATGTAGGCAAGAAAACTACATTGAAAGAATTTGTTGAAAAATATGAAGTTGCTTTGGAAGATAGGGAAGAAGCAGAAATGCATGCTGATTTTAATACATGGCATAAACAACCAGTCCTTAAAACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTATTCAAAAAGTTCCAAGTTGAAATTACGGGATTATCTGGATGTCATCTCAGGAAAAGGAACGAAGATAGTCAGCTCACCTCTTTTACAATATTCGACTTCGGAAATAGGGAAGAATTTGTTGTAGAGTGGGATGCATCGAAAGAGGAAATTTCTTGCATATGTCGTTTGTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCCATCCAATATAGTGGTATCTTTGTTGTCCCATCACACTACATATTGAAAAGATGGACAAAGGATATCAGAAGTCGGCATCATAAAAGAAAAATTAATGAAGATATTTGTTCGAAGAAGGAGAGATATGATCGTTTGTATCTGAAGGTCTCTCAATTGTTGGAGGAAGGATCATTAACTAATGAGAGTTATAACTTTGCATGTCATGCACTGGAAGAGGCCTTGAAACAATGTGCATTCCTTAACCGATCCTTAAAAAATAGCCCAGAAAATAGCAGGAAGAGCACTTTGCTTGACAAGAAACTACTTGATCCTCAAGTTTCGAAAACAAAAGGGGCACCGAAAAGAATAAAGAGCGGCATTGAAAGAGGTCGAAAGAGAACATCTGCTGGTAGCGTGAAAAAGGCTGCAATCGTTGAAAAAGAAGCAATGTCTGTCACTGATGAAGTTGTGGCTGCATCAACATCAATGGTGACTTTATCAACATCAGTGGCTGCACTTTGA

Protein sequence

>Msa0195930

MEPIDENEEHVINETVNNESYVGDLEANNVQQPSLGMEFESQEDAYSFYVQYAKSVGFGVSIKSSRRSKISREFIDVKYACTRYGKERVDRTKSTSLFEGGITINKAQQNCIETLQHVGVRTSKIYATMAKQHGGYEKVGCLEKDVRNYLDKDRRLNLESGDANAMLEYFMQMVVKFQLSDLEDGWIQSLYEERKHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVGKKTTLKEFVEKYEVALEDREEAEMHADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEITGLSGCHLRKRNEDSQLTSFTIFDFGNREEFVVEWDASKEEISCICRLFEYNGYLCRHSLMAIQYSGIFVVPSHYILKRWTKDIRSRHHKRKINEDICSKKERYDRLYLKVSQLLEEGSLTNESYNFACHALEEALKQCAFLNRSLKNSPENSRKSTLLDKKLLDPQVSKTKGAPKRIKSGIERGRKRTSAGSVKKAAIVEKEAMSVTDEVVAASTSMVTLSTSVAAL*