AlfalfaGEDB | Msa0198670

M. sativa cultivar zhongmu-4 / Msa0198670

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198670	XP_039686389.1	68.027	147	21	2	263	383	601	747	8.70e-48	185
Msa0198670	XP_039686389.1	79.310	58	12	0	222	279	371	428	1.78e-23	114
Msa0198670	XP_039686389.1	81.283	187	24	2	51	226	1	187	5.58e-94	310

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198670	sp\|Q9SZL8\|FRS5_ARATH	29.545	176	104	5	68	224	64	238	2.54e-11	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198670	A0A396J7J0	68.027	147	21	2	263	383	570	716	1.27e-48	186
Msa0198670	A0A396J7J0	79.310	58	12	0	222	279	340	397	6.96e-24	115
Msa0198670	A0A396J7J0	80.769	156	19	2	82	226	1	156	7.49e-75	256

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TFs/TRs:

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Gene ID	Type	Classification
Msa0198670	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198670	MtrunA17_Chr2g0296781	80.769	156	19	2	82	226	1	156	1.44e-78	256
Msa0198670	MtrunA17_Chr2g0296781	68.027	147	21	2	263	383	570	716	2.44e-52	186
Msa0198670	MtrunA17_Chr2g0296781	79.310	58	12	0	222	279	340	397	1.34e-27	115
Msa0198670	MtrunA17_Chr6g0477261	73.077	156	15	3	263	391	459	614	3.57e-63	214
Msa0198670	MtrunA17_Chr6g0477261	84.483	58	9	0	222	279	229	286	7.53e-29	118
Msa0198670	MtrunA17_Chr6g0477261	97.778	45	1	0	182	226	1	45	1.66e-20	93.6
Msa0198670	MtrunA17_Chr6g0476441	68.707	147	20	2	262	382	74	220	4.78e-57	188
Msa0198670	MtrunA17_Chr3g0077731	70.339	118	9	2	301	392	1	118	4.58e-45	151
Msa0198670	MtrunA17_Chr1g0196541	53.205	156	62	2	82	226	1	156	1.63e-41	155
Msa0198670	MtrunA17_Chr1g0196541	65.517	58	20	0	222	279	340	397	7.16e-22	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198670	AT4G38180.1	29.545	176	104	5	68	224	64	238	2.58e-12	68.9
Msa0198670	AT4G38180.1	43.396	53	30	0	227	279	429	481	2.09e-11	66.2

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Find 67 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGAAACACCTTGTGCT+GGG	0.609548	2_1:+17269282	Msa0198670:CDS
AAGGGCGTCCTCCTTCGAAA+AGG	0.541721	2_1:+17271236	Msa0198670:CDS
AATCAGAGTATTTGATTCGC+GGG	0.497029	2_1:-17268895	None:intergenic
AATGCGTGTATGTATTCAGA+CGG	0.642701	2_1:+17269518	Msa0198670:CDS
AATGTGTCCCTTACATATGC+AGG	0.504374	2_1:-17270419	None:intergenic
ACAAGCTACATGACAATGAA+TGG	0.585144	2_1:+17270360	Msa0198670:CDS
ACGTCTTGCCTCTGTGAATC+TGG	0.332473	2_1:+17268960	Msa0198670:CDS
AGCCAGTTTAGGATCAAGAA+TGG	0.525245	2_1:-17271206	None:intergenic
AGGAAAGAGTATCTGATTCG+CGG	0.589135	2_1:-17268854	None:intergenic
AGGAAATTACTGAGTATTAC+AGG	0.339510	2_1:+17269324	Msa0198670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCATTTACTACTTGTGT+TGG	+	chr2_1:17269151-17269170	Msa0198670:intron	30.0%
AGGAAATTACTGAGTATTAC+AGG	+	chr2_1:17269324-17269343	Msa0198670:CDS	30.0%
AGTTCAAAAAAAGGAGATGA+AGG	+	chr2_1:17269386-17269405	Msa0198670:CDS	30.0%
GTTCAAAAAAAGGAGATGAA+GGG	+	chr2_1:17269387-17269406	Msa0198670:CDS	30.0%
ATAATCATGATCTAAGTCCA+GGG	+	chr2_1:17269574-17269593	Msa0198670:CDS	30.0%
TTCGCCAAAATATTCATATG+CGG	-	chr2_1:17269931-17269950	None:intergenic	30.0%
ATGACAATGAATGGTTGAAA+GGG	+	chr2_1:17270369-17270388	Msa0198670:CDS	30.0%
ATTGCTTGTATTAGTCACTT+TGG	+	chr2_1:17270611-17270630	Msa0198670:intron	30.0%
AAAGTTTCAGGAATTCCAAT+TGG	+	chr2_1:17270670-17270689	Msa0198670:intron	30.0%
GATGAAAGATATTGTGTTCA+TGG	+	chr2_1:17270790-17270809	Msa0198670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	17268831	17271973	17268831	ID=Msa0198670;Name=Msa0198670
chr2_1	mRNA	17268831	17271973	17268831	ID=Msa0198670-mRNA-1;Parent=Msa0198670;Name=Msa0198670-mRNA-1;_AED=0.35;_eAED=0.43;_QI=0\|0\|0\|0.75\|0.14\|0.12\|8\|0\|398
chr2_1	exon	17268831	17268981	17268831	ID=Msa0198670-mRNA-1:exon:7298;Parent=Msa0198670-mRNA-1
chr2_1	exon	17269213	17269414	17269213	ID=Msa0198670-mRNA-1:exon:7299;Parent=Msa0198670-mRNA-1
chr2_1	exon	17269436	17269559	17269436	ID=Msa0198670-mRNA-1:exon:7300;Parent=Msa0198670-mRNA-1
chr2_1	exon	17269573	17269773	17269573	ID=Msa0198670-mRNA-1:exon:7301;Parent=Msa0198670-mRNA-1
chr2_1	exon	17270338	17270476	17270338	ID=Msa0198670-mRNA-1:exon:7302;Parent=Msa0198670-mRNA-1
chr2_1	exon	17271047	17271282	17271047	ID=Msa0198670-mRNA-1:exon:7303;Parent=Msa0198670-mRNA-1
chr2_1	exon	17271434	17271526	17271434	ID=Msa0198670-mRNA-1:exon:7304;Parent=Msa0198670-mRNA-1
chr2_1	exon	17271926	17271973	17271926	ID=Msa0198670-mRNA-1:exon:7305;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17268831	17268981	17268831	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17269213	17269414	17269213	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17269436	17269559	17269436	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17269573	17269773	17269573	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17270338	17270476	17270338	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17271047	17271282	17271047	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17271434	17271526	17271434	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1
chr2_1	CDS	17271926	17271973	17271926	ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1

Gene Sequence

>Msa0198670

ATGGAAACCCACGTTCTCCACTCCCGCGAATCAGATACTCTTTCCTGCGAATTGTTTCCTCATTCCCGCGAATCAAATACTCTGATTGGAGTTCAATCTCATTTGTTGCGACGTCGTTTTCTCATTCTCACGTCTTGCCTCTGTGAATCTGTGCAAGAAGGATTTGAGTCTTGTGATGAATTGGAAACTAATGATTGTTTAGAAGCAAATGATACTTATGAAGAAGAAACACCTTGTGCTGGGATGTCATTTGGATCTGAGAAGGAAATTACTGAGTATTACAGGAATTATGCTCAGCGGGTAGGTTTTGGAACTACTAAAATAAGTTCAAAAAAAGGAGATGAAGGGAAAATTCGATCTAGAAAGTATGTGAGTCACTCAAAGAATTTGTTAGAGCCAAATCCTGTAACAAAAACGCAGTGTAAGGCTAGATTGAATGCGTGTATGTATTCAGACGGAACAACTAAAATTTCAAGTCATAATCATGATCTAAGTCCAGGGAAAGCACGATATTTTAGATCGAACAAAAATATTGGGGCTCAAATGAAGAGGAGGTTAGAACTCAATGATCAAGCTGGGATTAATGTGAGTAGAAATTTTCGGTCCTTGGTCGGTGAAGCTAATGGGTATGAGAATCTCACATTTGGAGAAAAAGACTGCAGAAACTTCATAGACAAATGGGAAAATATGATTGAGTGTTACAAGCTACATGACAATGAATGGTTGAAAGGGATATTTGTTGAACGGCATCGTTGGGTTCCTGCATATGTAAGGGACACATTTTGGGCTGGAATGTCAACTACACAACGAAGTGAAACTTGTGATGCCTTTTATGAATTTGCTTCAACAAGGATAAATAGTGAAGATGATTTAGTGAAAGTGATGAACTGGATTCAAAACATGAAAATTGAGTTACCATGTAATGAAACATCTCCTAGAATTATAGAAGAAGATTGTTCAGTTCAAAGCCAAGCTACCATTCTTGATCCTAAACTGGCTCGAAGTAAAGGGCGTCCTCCTTCGAAAAGGAAGACTTCTAAAGTTGATCAGATTGGCCCATGCATATCTAGAGGTCAAGAAATTGAATATGAAGTGCGTTACAGATCTCAACTTGGTGATGGAATTGGCACACAAGAGAGCATTCAAGCTCCTTATTATTCTGAGGTCATAAACCATAATGCTACTTGTTCAGAT

Protein sequence

>Msa0198670

METHVLHSRESDTLSCELFPHSRESNTLIGVQSHLLRRRFLILTSCLCESVQEGFESCDELETNDCLEANDTYEEETPCAGMSFGSEKEITEYYRNYAQRVGFGTTKISSKKGDEGKIRSRKYVSHSKNLLEPNPVTKTQCKARLNACMYSDGTTKISSHNHDLSPGKARYFRSNKNIGAQMKRRLELNDQAGINVSRNFRSLVGEANGYENLTFGEKDCRNFIDKWENMIECYKLHDNEWLKGIFVERHRWVPAYVRDTFWAGMSTTQRSETCDAFYEFASTRINSEDDLVKVMNWIQNMKIELPCNETSPRIIEEDCSVQSQATILDPKLARSKGRPPSKRKTSKVDQIGPCISRGQEIEYEVRYRSQLGDGIGTQESIQAPYYSEVINHNATCSD