Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198670 | XP_039686389.1 | 68.027 | 147 | 21 | 2 | 263 | 383 | 601 | 747 | 8.70e-48 | 185 |
| Msa0198670 | XP_039686389.1 | 79.310 | 58 | 12 | 0 | 222 | 279 | 371 | 428 | 1.78e-23 | 114 |
| Msa0198670 | XP_039686389.1 | 81.283 | 187 | 24 | 2 | 51 | 226 | 1 | 187 | 5.58e-94 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198670 | sp|Q9SZL8|FRS5_ARATH | 29.545 | 176 | 104 | 5 | 68 | 224 | 64 | 238 | 2.54e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198670 | A0A396J7J0 | 68.027 | 147 | 21 | 2 | 263 | 383 | 570 | 716 | 1.27e-48 | 186 |
| Msa0198670 | A0A396J7J0 | 79.310 | 58 | 12 | 0 | 222 | 279 | 340 | 397 | 6.96e-24 | 115 |
| Msa0198670 | A0A396J7J0 | 80.769 | 156 | 19 | 2 | 82 | 226 | 1 | 156 | 7.49e-75 | 256 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0198670 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198670 | MtrunA17_Chr2g0296781 | 80.769 | 156 | 19 | 2 | 82 | 226 | 1 | 156 | 1.44e-78 | 256 |
| Msa0198670 | MtrunA17_Chr2g0296781 | 68.027 | 147 | 21 | 2 | 263 | 383 | 570 | 716 | 2.44e-52 | 186 |
| Msa0198670 | MtrunA17_Chr2g0296781 | 79.310 | 58 | 12 | 0 | 222 | 279 | 340 | 397 | 1.34e-27 | 115 |
| Msa0198670 | MtrunA17_Chr6g0477261 | 73.077 | 156 | 15 | 3 | 263 | 391 | 459 | 614 | 3.57e-63 | 214 |
| Msa0198670 | MtrunA17_Chr6g0477261 | 84.483 | 58 | 9 | 0 | 222 | 279 | 229 | 286 | 7.53e-29 | 118 |
| Msa0198670 | MtrunA17_Chr6g0477261 | 97.778 | 45 | 1 | 0 | 182 | 226 | 1 | 45 | 1.66e-20 | 93.6 |
| Msa0198670 | MtrunA17_Chr6g0476441 | 68.707 | 147 | 20 | 2 | 262 | 382 | 74 | 220 | 4.78e-57 | 188 |
| Msa0198670 | MtrunA17_Chr3g0077731 | 70.339 | 118 | 9 | 2 | 301 | 392 | 1 | 118 | 4.58e-45 | 151 |
| Msa0198670 | MtrunA17_Chr1g0196541 | 53.205 | 156 | 62 | 2 | 82 | 226 | 1 | 156 | 1.63e-41 | 155 |
| Msa0198670 | MtrunA17_Chr1g0196541 | 65.517 | 58 | 20 | 0 | 222 | 279 | 340 | 397 | 7.16e-22 | 97.8 |
| Msa0198670 | MtrunA17_Chr1g0196541 | 54.444 | 90 | 39 | 2 | 264 | 351 | 565 | 654 | 1.41e-17 | 84.7 |
| Msa0198670 | MtrunA17_Chr6g0476431 | 72.941 | 85 | 16 | 1 | 82 | 159 | 1 | 85 | 2.81e-36 | 127 |
| Msa0198670 | MtrunA17_Chr6g0451441 | 30.387 | 181 | 113 | 3 | 61 | 231 | 73 | 250 | 5.07e-18 | 85.5 |
| Msa0198670 | MtrunA17_Chr5g0441581 | 47.887 | 71 | 37 | 0 | 223 | 293 | 369 | 439 | 3.03e-15 | 77.8 |
| Msa0198670 | MtrunA17_Chr5g0441581 | 25.896 | 251 | 150 | 6 | 67 | 291 | 18 | 258 | 2.93e-14 | 74.7 |
| Msa0198670 | MtrunA17_Chr5g0448761 | 29.341 | 167 | 98 | 4 | 78 | 224 | 60 | 226 | 4.19e-13 | 71.2 |
| Msa0198670 | MtrunA17_Chr1g0202341 | 45.205 | 73 | 37 | 1 | 223 | 295 | 400 | 469 | 5.85e-13 | 70.5 |
| Msa0198670 | MtrunA17_Chr1g0207551 | 33.721 | 86 | 40 | 1 | 211 | 279 | 352 | 437 | 4.50e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198670 | AT4G38180.1 | 29.545 | 176 | 104 | 5 | 68 | 224 | 64 | 238 | 2.58e-12 | 68.9 |
| Msa0198670 | AT4G38180.1 | 43.396 | 53 | 30 | 0 | 227 | 279 | 429 | 481 | 2.09e-11 | 66.2 |
Find 67 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGTAAGGGACACATTT+TGG | 0.131035 | 2_1:+17270423 | Msa0198670:CDS |
| CAATCTTCTTCTATAATTCT+AGG | 0.251982 | 2_1:-17271163 | None:intergenic |
| TATGCTCAGCGGGTAGGTTT+TGG | 0.263362 | 2_1:+17269350 | Msa0198670:CDS |
| TGTTGAAGCAAATTCATAAA+AGG | 0.279740 | 2_1:-17271056 | None:intergenic |
| CCTTTACTTCGAGCCAGTTT+AGG | 0.301900 | 2_1:-17271217 | None:intergenic |
| GATCTGAACAAGTAGCATTA+TGG | 0.326929 | 2_1:-17271952 | None:intergenic |
| ACGTCTTGCCTCTGTGAATC+TGG | 0.332473 | 2_1:+17268960 | Msa0198670:CDS |
| AGGAAATTACTGAGTATTAC+AGG | 0.339510 | 2_1:+17269324 | Msa0198670:CDS |
| ATTTGAGTCTTGTGATGAAT+TGG | 0.359102 | 2_1:+17269223 | Msa0198670:CDS |
| CCTTGTGCTGGGATGTCATT+TGG | 0.364680 | 2_1:+17269293 | Msa0198670:CDS |
| CTAGGAGATGTTTCATTACA+TGG | 0.377943 | 2_1:-17271145 | None:intergenic |
| CGCGAATCAAATACTCTGAT+TGG | 0.392802 | 2_1:+17268897 | Msa0198670:CDS |
| TACCATTCTTGATCCTAAAC+TGG | 0.409646 | 2_1:+17271204 | Msa0198670:CDS |
| TCTCAACTTGGTGATGGAAT+TGG | 0.412917 | 2_1:+17271485 | Msa0198670:CDS |
| TCCTTGGTCGGTGAAGCTAA+TGG | 0.421297 | 2_1:+17269699 | Msa0198670:CDS |
| ATTTAGTGAAAGTGATGAAC+TGG | 0.429598 | 2_1:+17271098 | Msa0198670:CDS |
| ATTTGTTGAACGGCATCGTT+GGG | 0.432273 | 2_1:+17270394 | Msa0198670:CDS |
| CATAATCATGATCTAAGTCC+AGG | 0.436852 | 2_1:+17269573 | Msa0198670:CDS |
| GAGTATCTGATTCGCGGGAG+TGG | 0.438057 | 2_1:-17268848 | None:intergenic |
| CCTAAACTGGCTCGAAGTAA+AGG | 0.438698 | 2_1:+17271217 | Msa0198670:CDS |
| CTAAAATATCGTGCTTTCCC+TGG | 0.443457 | 2_1:-17269591 | None:intergenic |
| GTTGGGTTCCTGCATATGTA+AGG | 0.449314 | 2_1:+17270411 | Msa0198670:CDS |
| TTTATGACCTCAGAATAATA+AGG | 0.449844 | 2_1:-17271929 | None:intergenic |
| CCTTGGTCGGTGAAGCTAAT+GGG | 0.452698 | 2_1:+17269700 | Msa0198670:CDS |
| CATGACAATGAATGGTTGAA+AGG | 0.459474 | 2_1:+17270368 | Msa0198670:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.461849 | 2_1:+17269720 | Msa0198670:CDS |
| CTAAACTGGCTCGAAGTAAA+GGG | 0.481198 | 2_1:+17271218 | Msa0198670:CDS |
| TAGGATCAAGAATGGTAGCT+TGG | 0.489659 | 2_1:-17271198 | None:intergenic |
| TATTTGTTGAACGGCATCGT+TGG | 0.490805 | 2_1:+17270393 | Msa0198670:CDS |
| GAAGAAGAAACACCTTGTGC+TGG | 0.492435 | 2_1:+17269281 | Msa0198670:CDS |
| AATCAGAGTATTTGATTCGC+GGG | 0.497029 | 2_1:-17268895 | None:intergenic |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.500028 | 2_1:+17269200 | Msa0198670:intron |
| ATGACAATGAATGGTTGAAA+GGG | 0.502339 | 2_1:+17270369 | Msa0198670:CDS |
| AATGTGTCCCTTACATATGC+AGG | 0.504374 | 2_1:-17270419 | None:intergenic |
| CAATCAGAGTATTTGATTCG+CGG | 0.514553 | 2_1:-17268896 | None:intergenic |
| GCAGGCTCCTTATTATTCTG+AGG | 0.516319 | 2_1:+17271922 | Msa0198670:intron |
| AGCCAGTTTAGGATCAAGAA+TGG | 0.525245 | 2_1:-17271206 | None:intergenic |
| AGGAATTATGCTCAGCGGGT+AGG | 0.535514 | 2_1:+17269344 | Msa0198670:CDS |
| GTATTTGATTCGCGGGAATG+AGG | 0.537684 | 2_1:-17268888 | None:intergenic |
| AAGGGCGTCCTCCTTCGAAA+AGG | 0.541721 | 2_1:+17271236 | Msa0198670:CDS |
| TTACAGGAATTATGCTCAGC+GGG | 0.544325 | 2_1:+17269340 | Msa0198670:CDS |
| TGAAAGGGATATTTGTTGAA+CGG | 0.547538 | 2_1:+17270384 | Msa0198670:CDS |
| TCTTGACCTCTAGATATGCA+TGG | 0.555627 | 2_1:-17271437 | None:intergenic |
| CTTGACCTCTAGATATGCAT+GGG | 0.557675 | 2_1:-17271436 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 2_1:+17269651 | Msa0198670:CDS |
| TACAGATCTCAACTTGGTGA+TGG | 0.562461 | 2_1:+17271479 | Msa0198670:CDS |
| GGAAAGAGTATCTGATTCGC+GGG | 0.572201 | 2_1:-17268853 | None:intergenic |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 2_1:+17269652 | Msa0198670:CDS |
| ACAAGCTACATGACAATGAA+TGG | 0.585144 | 2_1:+17270360 | Msa0198670:CDS |
| AGGAAAGAGTATCTGATTCG+CGG | 0.589135 | 2_1:-17268854 | None:intergenic |
| CCCATTAGCTTCACCGACCA+AGG | 0.589497 | 2_1:-17269700 | None:intergenic |
| ATTCGCGGGAGTGGAGAACG+TGG | 0.595449 | 2_1:-17268839 | None:intergenic |
| ATAATCATGATCTAAGTCCA+GGG | 0.602115 | 2_1:+17269574 | Msa0198670:CDS |
| GATGTCATTTGGATCTGAGA+AGG | 0.602818 | 2_1:+17269304 | Msa0198670:CDS |
| CCAAATGACATCCCAGCACA+AGG | 0.603480 | 2_1:-17269293 | None:intergenic |
| GGAATGAGGAAACAATTCGC+AGG | 0.607904 | 2_1:-17268874 | None:intergenic |
| AAGAAGAAACACCTTGTGCT+GGG | 0.609548 | 2_1:+17269282 | Msa0198670:CDS |
| TTGGGTTCCTGCATATGTAA+GGG | 0.614874 | 2_1:+17270412 | Msa0198670:CDS |
| TTTATGAATTTGCTTCAACA+AGG | 0.617064 | 2_1:+17271059 | Msa0198670:CDS |
| TTGGGGCTCAAATGAAGAGG+AGG | 0.629697 | 2_1:+17269628 | Msa0198670:CDS |
| ATATTGGGGCTCAAATGAAG+AGG | 0.642532 | 2_1:+17269625 | Msa0198670:CDS |
| AATGCGTGTATGTATTCAGA+CGG | 0.642701 | 2_1:+17269518 | Msa0198670:CDS |
| GTGCGTTACAGATCTCAACT+TGG | 0.645749 | 2_1:+17271473 | Msa0198670:CDS |
| TTCGCGGGAGTGGAGAACGT+GGG | 0.646033 | 2_1:-17268838 | None:intergenic |
| CAGGGCCCATGCATATCTAG+AGG | 0.652261 | 2_1:+17271431 | Msa0198670:intron |
| ATTACAGGAATTATGCTCAG+CGG | 0.724935 | 2_1:+17269339 | Msa0198670:CDS |
| ATACGAGACCAGATTCACAG+AGG | 0.821380 | 2_1:-17268968 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTTTAAAATAAAAGTA+TGG | - | chr2_1:17271625-17271644 | None:intergenic | 10.0% |
| !! | ACTAAAATAAGTTCAAAAAA+AGG | + | chr2_1:17269377-17269396 | Msa0198670:CDS | 15.0% |
| !!! | TAGTCAATTTTATTATGTAA+TGG | + | chr2_1:17269848-17269867 | Msa0198670:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr2_1:17269970-17269989 | None:intergenic | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | + | chr2_1:17270553-17270572 | Msa0198670:intron | 15.0% |
| !!! | CTAATTTAGGATTTTTTTTA+TGG | + | chr2_1:17271408-17271427 | Msa0198670:intron | 15.0% |
| !! | AAATATTTACATAGAAAACA+TGG | - | chr2_1:17271675-17271694 | None:intergenic | 15.0% |
| !! | ATTAATATCATAACAGAATT+TGG | + | chr2_1:17271837-17271856 | Msa0198670:intron | 15.0% |
| !!! | TGTTTTTATATATCATTAGC+AGG | + | chr2_1:17269106-17269125 | Msa0198670:intron | 20.0% |
| !! | TTTAGATCGAACAAAAATAT+TGG | + | chr2_1:17269609-17269628 | Msa0198670:CDS | 20.0% |
| !! | TTAGATCGAACAAAAATATT+GGG | + | chr2_1:17269610-17269629 | Msa0198670:CDS | 20.0% |
| !!! | TTAATGTGAGTAGAAATTTT+CGG | + | chr2_1:17269676-17269695 | Msa0198670:CDS | 20.0% |
| !!! | AATTTAAAGGCATTTTATGT+AGG | + | chr2_1:17270864-17270883 | Msa0198670:intron | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | + | chr2_1:17270991-17271010 | Msa0198670:intron | 20.0% |
| !!! | ATAGTTGATAAGTCTAATTT+AGG | + | chr2_1:17271395-17271414 | Msa0198670:intron | 20.0% |
| !!! | TTCTATGTAAATATTTTAGC+AGG | + | chr2_1:17271679-17271698 | Msa0198670:intron | 20.0% |
| !! | ATTAAGTATATATTCTTTGC+AGG | + | chr2_1:17271904-17271923 | Msa0198670:intron | 20.0% |
| !! | ATTTGAAATACTCTGCTTTA+GGG | - | chr2_1:17269049-17269068 | None:intergenic | 25.0% |
| !! | AATTTGAAATACTCTGCTTT+AGG | - | chr2_1:17269050-17269069 | None:intergenic | 25.0% |
| !! | TTGTGTTGGTCAATTAATAT+AGG | + | chr2_1:17269165-17269184 | Msa0198670:intron | 25.0% |
| ! | TAGATCGAACAAAAATATTG+GGG | + | chr2_1:17269611-17269630 | Msa0198670:CDS | 25.0% |
| ! | CAATACAGAAATACTTTGTT+AGG | + | chr2_1:17269811-17269830 | Msa0198670:intron | 25.0% |
| !!! | ATTTTATTATGTAATGGACG+TGG | + | chr2_1:17269854-17269873 | Msa0198670:intron | 25.0% |
| ! | AAACAACCAAGTAAAAGTTT+CGG | - | chr2_1:17270078-17270097 | None:intergenic | 25.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | + | chr2_1:17270230-17270249 | Msa0198670:intron | 25.0% |
| !! | AAAGTGATTTTATGATGAAG+TGG | + | chr2_1:17270318-17270337 | Msa0198670:intron | 25.0% |
| !! | AAGTGATTTTATGATGAAGT+GGG | + | chr2_1:17270319-17270338 | Msa0198670:intron | 25.0% |
| !!! | AGTATGAACTCATTTTTTGA+TGG | + | chr2_1:17270476-17270495 | Msa0198670:intron | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | + | chr2_1:17270933-17270952 | Msa0198670:intron | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | + | chr2_1:17270977-17270996 | Msa0198670:intron | 25.0% |
| ! | TGTTGAAGCAAATTCATAAA+AGG | - | chr2_1:17271059-17271078 | None:intergenic | 25.0% |
| !! | TTTATGAATTTGCTTCAACA+AGG | + | chr2_1:17271059-17271078 | Msa0198670:CDS | 25.0% |
| ! | CAATCTTCTTCTATAATTCT+AGG | - | chr2_1:17271166-17271185 | None:intergenic | 25.0% |
| ! | ACTAAAAAGAACAACCAAAA+TGG | + | chr2_1:17271310-17271329 | Msa0198670:intron | 25.0% |
| !!! | CTTGACTTTTTTTACCATTT+TGG | - | chr2_1:17271327-17271346 | None:intergenic | 25.0% |
| ! | CAAAATGGTAAAAAAAGTCA+AGG | + | chr2_1:17271325-17271344 | Msa0198670:intron | 25.0% |
| !!! | TTTAGGATTTTTTTTATGGC+AGG | + | chr2_1:17271412-17271431 | Msa0198670:intron | 25.0% |
| !!! | TTAGGATTTTTTTTATGGCA+GGG | + | chr2_1:17271413-17271432 | Msa0198670:intron | 25.0% |
| ! | ATATTCTAGTCAAGTAAATC+AGG | + | chr2_1:17271538-17271557 | Msa0198670:intron | 25.0% |
| ! | TTTATGACCTCAGAATAATA+AGG | - | chr2_1:17271932-17271951 | None:intergenic | 25.0% |
| GTTTCATTTACTACTTGTGT+TGG | + | chr2_1:17269151-17269170 | Msa0198670:intron | 30.0% | |
| ! | TTTGTTGTATTAGTGCAAGA+AGG | + | chr2_1:17269200-17269219 | Msa0198670:intron | 30.0% |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | + | chr2_1:17269223-17269242 | Msa0198670:CDS | 30.0% |
| AGGAAATTACTGAGTATTAC+AGG | + | chr2_1:17269324-17269343 | Msa0198670:CDS | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+AGG | + | chr2_1:17269386-17269405 | Msa0198670:CDS | 30.0% | |
| GTTCAAAAAAAGGAGATGAA+GGG | + | chr2_1:17269387-17269406 | Msa0198670:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | + | chr2_1:17269574-17269593 | Msa0198670:CDS | 30.0% | |
| ! | TCGATTACGAAATGTGTTTT+GGG | + | chr2_1:17269887-17269906 | Msa0198670:intron | 30.0% |
| TTCGCCAAAATATTCATATG+CGG | - | chr2_1:17269931-17269950 | None:intergenic | 30.0% | |
| ! | TTACTTGGTTGTTTAAGACT+TGG | + | chr2_1:17270084-17270103 | Msa0198670:intron | 30.0% |
| ATGACAATGAATGGTTGAAA+GGG | + | chr2_1:17270369-17270388 | Msa0198670:CDS | 30.0% | |
| ! | TGAAAGGGATATTTGTTGAA+CGG | + | chr2_1:17270384-17270403 | Msa0198670:CDS | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | + | chr2_1:17270424-17270443 | Msa0198670:CDS | 30.0% |
| ATTGCTTGTATTAGTCACTT+TGG | + | chr2_1:17270611-17270630 | Msa0198670:intron | 30.0% | |
| AAAGTTTCAGGAATTCCAAT+TGG | + | chr2_1:17270670-17270689 | Msa0198670:intron | 30.0% | |
| ! | TCATAGAAGCTATTTCCAAT+TGG | - | chr2_1:17270688-17270707 | None:intergenic | 30.0% |
| GATGAAAGATATTGTGTTCA+TGG | + | chr2_1:17270790-17270809 | Msa0198670:intron | 30.0% | |
| TTTAAATTCAAACAAGTGGC+AGG | - | chr2_1:17270852-17270871 | None:intergenic | 30.0% | |
| ! | TGCCACTTGTTTGAATTTAA+AGG | + | chr2_1:17270851-17270870 | Msa0198670:intron | 30.0% |
| TGCCTTTAAATTCAAACAAG+TGG | - | chr2_1:17270856-17270875 | None:intergenic | 30.0% | |
| ! | CGTGCCATCTAATTATATTT+TGG | + | chr2_1:17270928-17270947 | Msa0198670:intron | 30.0% |
| CGTGCCAAAATATAATTAGA+TGG | - | chr2_1:17270935-17270954 | None:intergenic | 30.0% | |
| ATTTAGTGAAAGTGATGAAC+TGG | + | chr2_1:17271098-17271117 | Msa0198670:CDS | 30.0% | |
| AATGTATGGAGTAGTGAAAA+TGG | + | chr2_1:17271710-17271729 | Msa0198670:intron | 30.0% | |
| !! | TGTTCTTGATTTGGATTGAA+GGG | - | chr2_1:17271756-17271775 | None:intergenic | 30.0% |
| !! | ATGTTCTTGATTTGGATTGA+AGG | - | chr2_1:17271757-17271776 | None:intergenic | 30.0% |
| AATCCAAATCAAGAACATCT+TGG | + | chr2_1:17271759-17271778 | Msa0198670:intron | 30.0% | |
| ! | CAAGGTGCAAATATAGATTT+TGG | + | chr2_1:17271791-17271810 | Msa0198670:intron | 30.0% |
| ! | AATCAGAGTATTTGATTCGC+GGG | - | chr2_1:17268898-17268917 | None:intergenic | 35.0% |
| ! | CAATCAGAGTATTTGATTCG+CGG | - | chr2_1:17268899-17268918 | None:intergenic | 35.0% |
| GTAAGCAGAAACAGAGTTAT+GGG | - | chr2_1:17269001-17269020 | None:intergenic | 35.0% | |
| TGAATCAATGGAAGCTATGA+TGG | - | chr2_1:17269023-17269042 | None:intergenic | 35.0% | |
| ATTACAGGAATTATGCTCAG+CGG | + | chr2_1:17269339-17269358 | Msa0198670:CDS | 35.0% | |
| ! | TGCGTTTTTGTTACAGGATT+TGG | - | chr2_1:17269482-17269501 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTTTGTTAC+AGG | - | chr2_1:17269488-17269507 | None:intergenic | 35.0% |
| TGTAACAAAAACGCAGTGTA+AGG | + | chr2_1:17269487-17269506 | Msa0198670:CDS | 35.0% | |
| AATGCGTGTATGTATTCAGA+CGG | + | chr2_1:17269518-17269537 | Msa0198670:CDS | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | + | chr2_1:17269573-17269592 | Msa0198670:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | + | chr2_1:17269651-17269670 | Msa0198670:CDS | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | + | chr2_1:17269652-17269671 | Msa0198670:CDS | 35.0% | |
| AAAGTAAGACGATTACGACT+TGG | + | chr2_1:17269771-17269790 | Msa0198670:intron | 35.0% | |
| AAGTAAGACGATTACGACTT+GGG | + | chr2_1:17269772-17269791 | Msa0198670:intron | 35.0% | |
| ! | GTCGATTACGAAATGTGTTT+TGG | + | chr2_1:17269886-17269905 | Msa0198670:intron | 35.0% |
| TGATGGTTTACTCCAACAAA+AGG | - | chr2_1:17270008-17270027 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr2_1:17270008-17270027 | Msa0198670:intron | 35.0% | |
| ! | AGGATACCGAAACTTTTACT+TGG | + | chr2_1:17270069-17270088 | Msa0198670:intron | 35.0% |
| ! | TTGGTTGTTTAAGACTTGGT+TGG | + | chr2_1:17270088-17270107 | Msa0198670:intron | 35.0% |
| TGATCAGTGATTATGGCATT+TGG | - | chr2_1:17270134-17270153 | None:intergenic | 35.0% | |
| AGCAATGAAAAAGGCAATTG+AGG | + | chr2_1:17270160-17270179 | Msa0198670:intron | 35.0% | |
| ACAAGCTACATGACAATGAA+TGG | + | chr2_1:17270360-17270379 | Msa0198670:CDS | 35.0% | |
| CATGACAATGAATGGTTGAA+AGG | + | chr2_1:17270368-17270387 | Msa0198670:CDS | 35.0% | |
| ! | CATATGTAAGGGACACATTT+TGG | + | chr2_1:17270423-17270442 | Msa0198670:CDS | 35.0% |
| CGTATTAAACGAACGAAAGT+CGG | - | chr2_1:17270588-17270607 | None:intergenic | 35.0% | |
| CGACTTTCGTTCGTTTAATA+CGG | + | chr2_1:17270586-17270605 | Msa0198670:intron | 35.0% | |
| !!! | TGGTAAAGGCTTTTTGGAAT+TGG | - | chr2_1:17270646-17270665 | None:intergenic | 35.0% |
| !! | TTGCATTGGTAAAGGCTTTT+TGG | - | chr2_1:17270652-17270671 | None:intergenic | 35.0% |
| ! | CTGAAACTTTGCATTGGTAA+AGG | - | chr2_1:17270660-17270679 | None:intergenic | 35.0% |
| CTTTACCAATGCAAAGTTTC+AGG | + | chr2_1:17270658-17270677 | Msa0198670:intron | 35.0% | |
| GAATTCCTGAAACTTTGCAT+TGG | - | chr2_1:17270666-17270685 | None:intergenic | 35.0% | |
| TCATGCATGTTTCAACAGAT+TGG | + | chr2_1:17270715-17270734 | Msa0198670:intron | 35.0% | |
| !!! | CTAATTATATTTTGGCACGG+TGG | + | chr2_1:17270936-17270955 | Msa0198670:intron | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | + | chr2_1:17270995-17271014 | Msa0198670:intron | 35.0% |
| CTAGGAGATGTTTCATTACA+TGG | - | chr2_1:17271148-17271167 | None:intergenic | 35.0% | |
| TACCATTCTTGATCCTAAAC+TGG | + | chr2_1:17271204-17271223 | Msa0198670:CDS | 35.0% | |
| ! | TTAGAAGTCTTCCTTTTCGA+AGG | - | chr2_1:17271250-17271269 | None:intergenic | 35.0% |
| AATTTCATACTCACCTCTTC+AGG | - | chr2_1:17271352-17271371 | None:intergenic | 35.0% | |
| TCACCAAGATGTTCTTGATT+TGG | - | chr2_1:17271765-17271784 | None:intergenic | 35.0% | |
| ACATCTTGGTGAAGAAAACA+AGG | + | chr2_1:17271773-17271792 | Msa0198670:intron | 35.0% | |
| !! | AGGAAAGAGTATCTGATTCG+CGG | - | chr2_1:17268857-17268876 | None:intergenic | 40.0% |
| CGCGAATCAAATACTCTGAT+TGG | + | chr2_1:17268897-17268916 | Msa0198670:CDS | 40.0% | |
| GGTAAGCAGAAACAGAGTTA+TGG | - | chr2_1:17269002-17269021 | None:intergenic | 40.0% | |
| !! | GCTTTAGGGCTATGAATCAA+TGG | - | chr2_1:17269035-17269054 | None:intergenic | 40.0% |
| AAGAAGAAACACCTTGTGCT+GGG | + | chr2_1:17269282-17269301 | Msa0198670:CDS | 40.0% | |
| ! | GATGTCATTTGGATCTGAGA+AGG | + | chr2_1:17269304-17269323 | Msa0198670:CDS | 40.0% |
| TTACAGGAATTATGCTCAGC+GGG | + | chr2_1:17269340-17269359 | Msa0198670:CDS | 40.0% | |
| CTAAAATATCGTGCTTTCCC+TGG | - | chr2_1:17269594-17269613 | None:intergenic | 40.0% | |
| ATATTGGGGCTCAAATGAAG+AGG | + | chr2_1:17269625-17269644 | Msa0198670:CDS | 40.0% | |
| ! | GAGTAGAAATTTTCGGTCCT+TGG | + | chr2_1:17269683-17269702 | Msa0198670:CDS | 40.0% |
| ! | AGAAATTTTCGGTCCTTGGT+CGG | + | chr2_1:17269687-17269706 | Msa0198670:CDS | 40.0% |
| GGGTATGAGAATCTCACATT+TGG | + | chr2_1:17269720-17269739 | Msa0198670:CDS | 40.0% | |
| ! | AGGGCCGCATATGAATATTT+TGG | + | chr2_1:17269924-17269943 | Msa0198670:intron | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr2_1:17269993-17270012 | Msa0198670:intron | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr2_1:17269999-17270018 | None:intergenic | 40.0% | |
| ! | ACAACATTGACTGACCATGA+TGG | - | chr2_1:17270025-17270044 | None:intergenic | 40.0% |
| TCATGGTCAGTCAATGTTGT+TGG | + | chr2_1:17270025-17270044 | Msa0198670:intron | 40.0% | |
| CATGGTCAGTCAATGTTGTT+GGG | + | chr2_1:17270026-17270045 | Msa0198670:intron | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | + | chr2_1:17270049-17270068 | Msa0198670:intron | 40.0% | |
| ACTTGGTTGGAATGTATGCA+TGG | + | chr2_1:17270101-17270120 | Msa0198670:intron | 40.0% | |
| GCCATAATCACTGATCAAGA+CGG | + | chr2_1:17270137-17270156 | Msa0198670:intron | 40.0% | |
| TCCGTCTTGATCAGTGATTA+TGG | - | chr2_1:17270141-17270160 | None:intergenic | 40.0% | |
| TCAAGACGGAGCAATGAAAA+AGG | + | chr2_1:17270151-17270170 | Msa0198670:intron | 40.0% | |
| AATTGAGGTTGTCTTTCCGA+AGG | + | chr2_1:17270175-17270194 | Msa0198670:intron | 40.0% | |
| ! | GAGTGTCTACCAAACTTTTC+TGG | - | chr2_1:17270242-17270261 | None:intergenic | 40.0% |
| ! | TATTTGTTGAACGGCATCGT+TGG | + | chr2_1:17270393-17270412 | Msa0198670:CDS | 40.0% |
| ! | ATTTGTTGAACGGCATCGTT+GGG | + | chr2_1:17270394-17270413 | Msa0198670:CDS | 40.0% |
| TTGGGTTCCTGCATATGTAA+GGG | + | chr2_1:17270412-17270431 | Msa0198670:CDS | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | - | chr2_1:17270422-17270441 | None:intergenic | 40.0% | |
| TTGCTTCAGTGTTGTCTTTG+AGG | - | chr2_1:17270510-17270529 | None:intergenic | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | + | chr2_1:17270718-17270737 | Msa0198670:intron | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | + | chr2_1:17270719-17270738 | Msa0198670:intron | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | + | chr2_1:17270724-17270743 | Msa0198670:intron | 40.0% | |
| TTGTGAGCTTAAGCACACAA+AGG | - | chr2_1:17270895-17270914 | None:intergenic | 40.0% | |
| TTTGTGTGCTTAAGCTCACA+AGG | + | chr2_1:17270894-17270913 | Msa0198670:intron | 40.0% | |
| !!! | ATTATATTTTGGCACGGTGG+AGG | + | chr2_1:17270939-17270958 | Msa0198670:intron | 40.0% |
| GGTGGAGGAAAGATATAAAG+AGG | + | chr2_1:17270954-17270973 | Msa0198670:intron | 40.0% | |
| GGAGGAAAGATATAAAGAGG+AGG | + | chr2_1:17270957-17270976 | Msa0198670:intron | 40.0% | |
| TAGGATCAAGAATGGTAGCT+TGG | - | chr2_1:17271201-17271220 | None:intergenic | 40.0% | |
| ! | AGCCAGTTTAGGATCAAGAA+TGG | - | chr2_1:17271209-17271228 | None:intergenic | 40.0% |
| !! | CTAAACTGGCTCGAAGTAAA+GGG | + | chr2_1:17271218-17271237 | Msa0198670:CDS | 40.0% |
| AAAAAGTCAAGGTCCTGAAG+AGG | + | chr2_1:17271336-17271355 | Msa0198670:intron | 40.0% | |
| CTTGACCTCTAGATATGCAT+GGG | - | chr2_1:17271439-17271458 | None:intergenic | 40.0% | |
| TCTTGACCTCTAGATATGCA+TGG | - | chr2_1:17271440-17271459 | None:intergenic | 40.0% | |
| ! | TACAGATCTCAACTTGGTGA+TGG | + | chr2_1:17271479-17271498 | Msa0198670:CDS | 40.0% |
| !! | TCTCAACTTGGTGATGGAAT+TGG | + | chr2_1:17271485-17271504 | Msa0198670:CDS | 40.0% |
| !! | GGAAAGAGTATCTGATTCGC+GGG | - | chr2_1:17268856-17268875 | None:intergenic | 45.0% |
| GGAATGAGGAAACAATTCGC+AGG | - | chr2_1:17268877-17268896 | None:intergenic | 45.0% | |
| ! | GTATTTGATTCGCGGGAATG+AGG | - | chr2_1:17268891-17268910 | None:intergenic | 45.0% |
| ATACGAGACCAGATTCACAG+AGG | - | chr2_1:17268971-17268990 | None:intergenic | 45.0% | |
| AGCAGAAACAGAGTTATGGG+AGG | - | chr2_1:17268998-17269017 | None:intergenic | 45.0% | |
| GAAGAAGAAACACCTTGTGC+TGG | + | chr2_1:17269281-17269300 | Msa0198670:CDS | 45.0% | |
| TTTGGGCAGATGCAAGATGT+AGG | + | chr2_1:17269904-17269923 | Msa0198670:intron | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | + | chr2_1:17269905-17269924 | Msa0198670:intron | 45.0% | |
| GTTGGGTTCCTGCATATGTA+AGG | + | chr2_1:17270411-17270430 | Msa0198670:CDS | 45.0% | |
| CCTTTACTTCGAGCCAGTTT+AGG | - | chr2_1:17271220-17271239 | None:intergenic | 45.0% | |
| !! | CCTAAACTGGCTCGAAGTAA+AGG | + | chr2_1:17271217-17271236 | Msa0198670:CDS | 45.0% |
| ! | GAAGTCTTCCTTTTCGAAGG+AGG | - | chr2_1:17271247-17271266 | None:intergenic | 45.0% |
| GTGCGTTACAGATCTCAACT+TGG | + | chr2_1:17271473-17271492 | Msa0198670:CDS | 45.0% | |
| AGCAGGAGCAGAACAATGTA+TGG | + | chr2_1:17271696-17271715 | Msa0198670:intron | 45.0% | |
| GCAGGCTCCTTATTATTCTG+AGG | + | chr2_1:17271922-17271941 | Msa0198670:intron | 45.0% | |
| ACGTCTTGCCTCTGTGAATC+TGG | + | chr2_1:17268960-17268979 | Msa0198670:CDS | 50.0% | |
| CCAAATGACATCCCAGCACA+AGG | - | chr2_1:17269296-17269315 | None:intergenic | 50.0% | |
| CCTTGTGCTGGGATGTCATT+TGG | + | chr2_1:17269293-17269312 | Msa0198670:CDS | 50.0% | |
| AGGAATTATGCTCAGCGGGT+AGG | + | chr2_1:17269344-17269363 | Msa0198670:CDS | 50.0% | |
| ! | TATGCTCAGCGGGTAGGTTT+TGG | + | chr2_1:17269350-17269369 | Msa0198670:CDS | 50.0% |
| TTGGGGCTCAAATGAAGAGG+AGG | + | chr2_1:17269628-17269647 | Msa0198670:CDS | 50.0% | |
| TCCTTGGTCGGTGAAGCTAA+TGG | + | chr2_1:17269699-17269718 | Msa0198670:CDS | 50.0% | |
| CCTTGGTCGGTGAAGCTAAT+GGG | + | chr2_1:17269700-17269719 | Msa0198670:CDS | 50.0% | |
| ! | AGACGATTACGACTTGGGAC+AGG | + | chr2_1:17269777-17269796 | Msa0198670:intron | 50.0% |
| TCTTTCCGAAGGCTCGTCAT+CGG | + | chr2_1:17270186-17270205 | Msa0198670:intron | 50.0% | |
| ! | GTAAGGGACACATTTTGGGC+TGG | + | chr2_1:17270428-17270447 | Msa0198670:CDS | 50.0% |
| ! | GAGTATCTGATTCGCGGGAG+TGG | - | chr2_1:17268851-17268870 | None:intergenic | 55.0% |
| ! | CCCATTAGCTTCACCGACCA+AGG | - | chr2_1:17269703-17269722 | None:intergenic | 55.0% |
| CTCGTCATCGGTGGTGCTTA+TGG | + | chr2_1:17270198-17270217 | Msa0198670:intron | 55.0% | |
| !! | AAGGGCGTCCTCCTTCGAAA+AGG | + | chr2_1:17271236-17271255 | Msa0198670:CDS | 55.0% |
| CAGGGCCCATGCATATCTAG+AGG | + | chr2_1:17271431-17271450 | Msa0198670:intron | 55.0% | |
| TTCGCGGGAGTGGAGAACGT+GGG | - | chr2_1:17268841-17268860 | None:intergenic | 60.0% | |
| ATTCGCGGGAGTGGAGAACG+TGG | - | chr2_1:17268842-17268861 | None:intergenic | 60.0% | |
| TTCCGAAGGCTCGTCATCGG+TGG | + | chr2_1:17270189-17270208 | Msa0198670:intron | 60.0% | |
| CACCACCGATGACGAGCCTT+CGG | - | chr2_1:17270194-17270213 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 17268831 | 17271973 | 17268831 | ID=Msa0198670;Name=Msa0198670 |
| chr2_1 | mRNA | 17268831 | 17271973 | 17268831 | ID=Msa0198670-mRNA-1;Parent=Msa0198670;Name=Msa0198670-mRNA-1;_AED=0.35;_eAED=0.43;_QI=0|0|0|0.75|0.14|0.12|8|0|398 |
| chr2_1 | exon | 17268831 | 17268981 | 17268831 | ID=Msa0198670-mRNA-1:exon:7298;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17269213 | 17269414 | 17269213 | ID=Msa0198670-mRNA-1:exon:7299;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17269436 | 17269559 | 17269436 | ID=Msa0198670-mRNA-1:exon:7300;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17269573 | 17269773 | 17269573 | ID=Msa0198670-mRNA-1:exon:7301;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17270338 | 17270476 | 17270338 | ID=Msa0198670-mRNA-1:exon:7302;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17271047 | 17271282 | 17271047 | ID=Msa0198670-mRNA-1:exon:7303;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17271434 | 17271526 | 17271434 | ID=Msa0198670-mRNA-1:exon:7304;Parent=Msa0198670-mRNA-1 |
| chr2_1 | exon | 17271926 | 17271973 | 17271926 | ID=Msa0198670-mRNA-1:exon:7305;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17268831 | 17268981 | 17268831 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17269213 | 17269414 | 17269213 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17269436 | 17269559 | 17269436 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17269573 | 17269773 | 17269573 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17270338 | 17270476 | 17270338 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17271047 | 17271282 | 17271047 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17271434 | 17271526 | 17271434 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| chr2_1 | CDS | 17271926 | 17271973 | 17271926 | ID=Msa0198670-mRNA-1:cds;Parent=Msa0198670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
