AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199920 MtrunA17_Chr2g0294671 96.162 495 15 1 46 536 1 495 0.0 968
Msa0199920 MtrunA17_Chr6g0448821 30.189 265 179 4 263 523 94 356 5.34e-32 127
Msa0199920 MtrunA17_Chr5g0428941 29.455 275 184 6 258 525 213 484 1.40e-29 122
Msa0199920 MtrunA17_Chr5g0428941 22.695 282 169 7 252 529 139 375 5.26e-12 68.2
Msa0199920 MtrunA17_Chr1g0212691 29.474 285 189 6 252 528 175 455 3.37e-29 120
Msa0199920 MtrunA17_Chr1g0212691 22.727 264 178 5 230 471 67 326 1.62e-12 69.7
Msa0199920 MtrunA17_Chr5g0417641 34.615 208 130 5 322 524 87 293 4.52e-29 117
Msa0199920 MtrunA17_Chr2g0304101 31.405 242 151 6 302 529 70 310 2.52e-27 112
Msa0199920 MtrunA17_Chr4g0034981 25.260 289 207 7 252 533 309 595 7.74e-27 114
Msa0199920 MtrunA17_Chr4g0034981 25.000 256 179 5 285 531 271 522 8.91e-20 92.8
Msa0199920 MtrunA17_Chr4g0034981 29.949 197 135 3 249 443 378 573 1.45e-14 76.6
Msa0199920 MtrunA17_Chr4g0043941 26.007 273 196 4 258 524 47 319 6.05e-26 108
Msa0199920 MtrunA17_Chr4g0043941 24.424 217 153 3 328 536 10 223 8.97e-13 69.7
Msa0199920 MtrunA17_Chr4g0043941 27.389 157 112 2 248 402 109 265 4.95e-12 67.4
Msa0199920 MtrunA17_Chr5g0445491 31.004 229 143 6 255 474 229 451 6.90e-25 108
Msa0199920 MtrunA17_Chr5g0445491 27.468 233 139 7 311 519 177 403 1.45e-17 85.5
Msa0199920 MtrunA17_Chr5g0445491 29.016 193 132 4 248 436 258 449 1.81e-16 82.4
Msa0199920 MtrunA17_Chr2g0311181 29.778 225 146 5 308 527 86 303 2.83e-23 100
Msa0199920 MtrunA17_Chr8g0391881 27.519 258 175 6 251 500 121 374 2.34e-20 93.2
Msa0199920 MtrunA17_Chr3g0127891 24.383 324 193 12 256 535 187 502 1.79e-19 91.7
Msa0199920 MtrunA17_Chr7g0250261 29.756 205 132 5 328 523 78 279 8.18e-16 78.2
Msa0199920 MtrunA17_Chr0c29g0494001 29.756 205 132 5 328 523 78 279 8.18e-16 78.2
Msa0199920 MtrunA17_Chr4g0067141 25.368 272 172 9 256 516 81 332 1.89e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199920 AT4G14605.2 63.616 448 152 4 87 524 22 468 0.0 563
Msa0199920 AT4G14605.1 63.616 448 152 4 87 524 22 468 0.0 563
Msa0199920 AT2G21710.1 28.912 294 194 7 252 535 316 604 1.18e-32 132
Msa0199920 AT2G21710.1 30.366 191 130 3 249 437 385 574 3.46e-13 72.8
Msa0199920 AT2G21710.1 27.402 281 184 7 118 397 306 567 5.79e-12 68.9
Msa0199920 AT2G44020.1 28.037 321 185 6 251 528 143 460 1.00e-29 122
Msa0199920 AT4G38160.4 27.372 274 186 5 262 525 52 322 5.15e-27 112
Msa0199920 AT4G38160.4 30.719 153 103 3 248 397 110 262 8.17e-14 73.2
Msa0199920 AT4G38160.1 27.372 274 186 5 262 525 52 322 5.15e-27 112
Msa0199920 AT4G38160.1 30.719 153 103 3 248 397 110 262 8.17e-14 73.2
Msa0199920 AT1G78930.1 28.125 256 179 3 272 523 320 574 7.18e-27 115
Msa0199920 AT4G38160.2 27.372 274 186 5 262 525 52 322 1.15e-26 111
Msa0199920 AT4G38160.2 30.719 153 103 3 248 397 110 262 1.01e-13 73.2
Msa0199920 AT4G38160.3 27.372 274 186 5 262 525 52 322 1.26e-26 112
Msa0199920 AT4G38160.3 30.719 153 103 3 248 397 110 262 1.30e-13 73.2
Msa0199920 AT2G34620.1 31.250 240 150 6 302 527 56 294 1.23e-25 107
Msa0199920 AT2G34620.1 28.972 214 143 7 230 439 66 274 2.15e-11 65.5
Msa0199920 AT2G03050.2 32.353 204 131 6 330 527 71 273 1.74e-23 100
Msa0199920 AT2G03050.2 25.346 217 140 8 228 439 54 253 8.70e-11 63.5
Msa0199920 AT2G03050.1 32.353 204 131 6 330 527 70 272 1.78e-23 100
Msa0199920 AT2G03050.1 25.346 217 140 8 228 439 53 252 9.18e-11 63.5
Msa0199920 AT4G02990.2 26.923 286 191 7 251 525 214 492 3.12e-23 103
Msa0199920 AT4G02990.2 25.000 224 150 4 226 435 111 330 4.98e-14 75.1
Msa0199920 AT4G02990.1 26.923 286 191 7 251 525 214 492 3.12e-23 103
Msa0199920 AT4G02990.1 25.000 224 150 4 226 435 111 330 4.98e-14 75.1
Msa0199920 AT2G21710.2 27.642 246 163 7 252 487 316 556 5.42e-23 103
Msa0199920 AT2G21710.2 25.229 218 156 2 288 498 245 462 6.56e-15 78.2
Msa0199920 AT2G21710.2 27.888 251 164 6 118 367 306 540 5.62e-12 68.6
Msa0199920 AT2G21710.2 31.847 157 104 3 249 403 385 540 5.82e-12 68.6
Msa0199920 AT2G21710.3 27.755 245 162 7 252 486 316 555 1.03e-22 102
Msa0199920 AT2G21710.3 25.229 218 156 2 288 498 245 462 5.01e-15 78.6
Msa0199920 AT2G21710.3 31.847 157 104 3 249 403 385 540 4.81e-12 68.9
Msa0199920 AT2G21710.3 27.888 251 164 6 118 367 306 540 6.70e-12 68.6
Msa0199920 AT3G18870.1 27.962 211 128 5 327 523 68 268 3.82e-20 90.9
Msa0199920 AT5G55580.1 25.333 225 159 6 256 474 223 444 1.73e-18 89.0
Msa0199920 AT5G55580.1 27.551 196 133 4 248 437 251 443 1.78e-17 85.9
Msa0199920 AT5G55580.1 23.922 255 184 7 254 500 186 438 2.29e-16 82.4
Msa0199920 AT5G55580.1 26.267 217 131 7 326 519 186 396 8.42e-13 71.2
Msa0199920 AT5G55580.1 25.000 188 131 5 328 505 223 410 2.55e-12 69.7
Msa0199920 AT5G55580.2 25.333 225 159 6 256 474 117 338 3.36e-18 87.0
Msa0199920 AT5G55580.2 27.551 196 133 4 248 437 145 337 2.44e-17 84.7
Msa0199920 AT5G55580.2 23.922 255 184 7 254 500 80 332 4.04e-16 80.9
Msa0199920 AT5G55580.2 26.267 217 131 7 326 519 80 290 1.08e-12 70.5
Msa0199920 AT5G55580.2 25.000 188 131 5 328 505 117 304 3.23e-12 68.9
Msa0199920 AT2G36000.1 28.571 196 127 5 339 527 122 311 3.87e-17 83.2
Msa0199920 AT2G36000.2 28.571 196 127 5 339 527 122 311 6.56e-17 82.4
Msa0199920 AT5G54180.1 25.090 279 168 9 249 523 247 488 2.78e-14 75.9
Msa0199920 AT5G55580.3 26.452 155 111 3 256 407 223 377 6.76e-14 73.9
Msa0199920 AT5G55580.3 24.747 198 128 6 326 508 186 377 3.57e-12 68.6
Msa0199920 AT1G79220.1 30.769 143 92 3 252 392 149 286 9.57e-12 67.4

Find 131 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAACTTGGTACCTTTC+AGG 0.159283 2_1:+19354322 Msa0199920:CDS
TTCAATTGTCCACAAAATTT+TGG 0.188550 2_1:+19355148 Msa0199920:CDS
ATGAAATTCTTTGAATCTTT+AGG 0.194746 2_1:+19354890 Msa0199920:CDS
TATTGAAAATTGAGACTTTC+AGG 0.207273 2_1:+19355558 Msa0199920:three_prime_UTR
AATTTAACCAGCTCAGATTT+TGG 0.213106 2_1:-19355337 None:intergenic
TGAAATTCTTTGAATCTTTA+GGG 0.230459 2_1:+19354891 Msa0199920:CDS
GAGACTTTCAGGCATGTTTC+AGG 0.242717 2_1:+19355569 Msa0199920:three_prime_UTR
GGTTACACCGTGGAAGAAAT+TGG 0.280461 2_1:+19355223 Msa0199920:CDS
TTATCCTTAACGGGTGGATT+TGG 0.281395 2_1:-19354536 None:intergenic
TTCTCATTATCCTCACTAAA+AGG 0.287136 2_1:+19354822 Msa0199920:CDS
GCAGCTGCTGGTGGTGAGTT+GGG 0.314129 2_1:-19352678 None:intergenic
TTGTGTTACGGGCTTTATAT+TGG 0.339450 2_1:-19355185 None:intergenic
GAGAGAAGGTGATCAATAAA+AGG 0.346069 2_1:-19354283 None:intergenic
GCTGGTGGTGAGTTGGGTGG+TGG 0.351488 2_1:-19352672 None:intergenic
CTAGGATTGGGAGGTGGAAT+TGG 0.358395 2_1:-19354569 None:intergenic
TGCGTCAGATTTATCCTTAA+CGG 0.363432 2_1:-19354546 None:intergenic
AAAGAAAATGCAAGTTGGTT+AGG 0.364177 2_1:+19355501 Msa0199920:CDS
GGGATTATGATTATGAGATA+TGG 0.366062 2_1:+19355244 Msa0199920:CDS
GCGAAAAGTTGCAGTTATAC+TGG 0.367418 2_1:+19355649 Msa0199920:three_prime_UTR
GGTAACATGACACCAGGTTT+TGG 0.379077 2_1:+19355889 Msa0199920:three_prime_UTR
CTGAGAATTTGATGCCGAAA+TGG 0.384614 2_1:+19355290 Msa0199920:CDS
GTGAGAACAATGGCAGAAAT+TGG 0.386760 2_1:-19352645 None:intergenic
TGCAGCTGCTGGTGGTGAGT+TGG 0.390922 2_1:-19352679 None:intergenic
AAGTGATTAGAGGATGCTTT+TGG 0.393419 2_1:+19355868 Msa0199920:three_prime_UTR
ATTGTGGGGCGGTTGAATTA+AGG 0.395948 2_1:-19352781 None:intergenic
TAAAGATTCAAAGAATTTCA+TGG 0.398908 2_1:-19354888 None:intergenic
CTATCCAAATCCACCCGTTA+AGG 0.401472 2_1:+19354532 Msa0199920:CDS
TTTACCCTCCAAACTATAGT+AGG 0.403290 2_1:-19354747 None:intergenic
ACACTGTAACTAACAATAGT+TGG 0.403606 2_1:-19355058 None:intergenic
AACCCTATTGGCAGCAGAAA+AGG 0.405382 2_1:+19354174 Msa0199920:CDS
GGTGAGATTACTGTTGAATC+AGG 0.408489 2_1:+19355429 Msa0199920:CDS
AGCTTACAACTCTTGAGATC+AGG 0.409547 2_1:+19354438 Msa0199920:CDS
ATAGCAGCGGGTGCAGCTGC+TGG 0.415077 2_1:-19352690 None:intergenic
TGGTGAGTTGGGTGGTGGGT+AGG 0.416600 2_1:-19352667 None:intergenic
GAGTGGAATATCACTGCAAA+TGG 0.423567 2_1:-19352730 None:intergenic
GCGTCAGATTTATCCTTAAC+GGG 0.424748 2_1:-19354545 None:intergenic
AAACTATAGTAGGCAAAAGC+TGG 0.426748 2_1:-19354737 None:intergenic
CTGGTGGTGAGTTGGGTGGT+GGG 0.427996 2_1:-19352671 None:intergenic
GCAATGTACTTCCGTTCTCT+AGG 0.440973 2_1:+19355103 Msa0199920:CDS
ACTGTTGCCTCCAACCCTAT+TGG 0.443356 2_1:+19354162 Msa0199920:CDS
CAATGTACTTCCGTTCTCTA+GGG 0.451044 2_1:+19355104 Msa0199920:CDS
TTGATGACGGAGGAAGGTTC+CGG 0.452496 2_1:-19352608 None:intergenic
GTTACACCGTGGAAGAAATT+GGG 0.454315 2_1:+19355224 Msa0199920:CDS
GTTCCGGTAGCTGTGGCTAT+AGG 0.457503 2_1:-19352592 None:intergenic
TGCTATAAGTTAGCAGGGCT+GGG 0.457629 2_1:-19354952 None:intergenic
GTGCTATAAGTTAGCAGGGC+TGG 0.458589 2_1:-19354953 None:intergenic
CTTCTGAGACGCCAAATTCG+TGG 0.460800 2_1:-19355006 None:intergenic
TTTGTAAAATAAGTGATTAG+AGG 0.461240 2_1:+19355858 Msa0199920:three_prime_UTR
GTGGACAATTGAATAGAAGA+AGG 0.464746 2_1:-19355138 None:intergenic
TCCTCATATTGCTTATCTGA+TGG 0.465202 2_1:+19354667 Msa0199920:CDS
TGAGAATTTGATGCCGAAAT+GGG 0.466974 2_1:+19355291 Msa0199920:CDS
GAATGGATACTGACCAGGTT+AGG 0.467843 2_1:+19354696 Msa0199920:CDS
TCTGCTGCCAATAGGGTTGG+AGG 0.469021 2_1:-19354169 None:intergenic
TGGTGCTATTTATTAAAATG+AGG 0.470357 2_1:+19355909 Msa0199920:three_prime_UTR
ATGGCAGAAATTGGCTTTGA+CGG 0.470595 2_1:-19352636 None:intergenic
CTCAACTTCCTTCCTCTACA+AGG 0.472025 2_1:+19353978 Msa0199920:CDS
GTCTACCGCTGGACTAGGAT+TGG 0.479245 2_1:-19354582 None:intergenic
GGACGAAGATTTCCCTCAGC+AGG 0.482343 2_1:-19354647 None:intergenic
TCTGCGTGCTATAAGTTAGC+AGG 0.485788 2_1:-19354958 None:intergenic
AAAATAAAGAAAATGCAAGT+TGG 0.492928 2_1:+19355496 Msa0199920:CDS
TTAGAGTCTACCGCTGGACT+AGG 0.493917 2_1:-19354587 None:intergenic
AGTAGGCAAAAGCTGGGAAT+CGG 0.495536 2_1:-19354730 None:intergenic
ACTAAAAGGCCTCAATTATG+TGG 0.498259 2_1:+19354836 Msa0199920:CDS
CACTGTAACTAACAATAGTT+GGG 0.500646 2_1:-19355057 None:intergenic
AGGGGTTGACAAGGAACAAT+GGG 0.507393 2_1:+19354910 Msa0199920:CDS
TCTACCGCTGGACTAGGATT+GGG 0.511945 2_1:-19354581 None:intergenic
CATAATCCCAATTTCTTCCA+CGG 0.513081 2_1:-19355230 None:intergenic
AAGTTAGCAGGGCTGGGAAA+CGG 0.513243 2_1:-19354946 None:intergenic
CGTTCTCTAGGGGTTGATGT+TGG 0.515834 2_1:+19355115 Msa0199920:CDS
AAACAAGGTTAATACAGCCT+TGG 0.517039 2_1:-19354203 None:intergenic
TTGCAGTTATACTGGAACAT+AGG 0.526011 2_1:+19355657 Msa0199920:three_prime_UTR
AACTATAGTAGGCAAAAGCT+GGG 0.542556 2_1:-19354736 None:intergenic
GGATTACCCAAAATCTGAGC+TGG 0.542893 2_1:+19355330 Msa0199920:CDS
TTTGCCTACTATAGTTTGGA+GGG 0.546380 2_1:+19354743 Msa0199920:CDS
AAGAAGACCCTTGTAGAGGA+AGG 0.547271 2_1:-19353986 None:intergenic
TAATAAATAGCACCAAAACC+TGG 0.549355 2_1:-19355901 None:intergenic
TCCATCAGATAAGCAATATG+AGG 0.550329 2_1:-19354668 None:intergenic
TTCACTCTAGACACAAAACT+TGG 0.551240 2_1:+19354311 Msa0199920:CDS
TAGAGTGAAGCTTTGAGAGA+AGG 0.552642 2_1:-19354297 None:intergenic
TCACCTATAGCCACAGCTAC+CGG 0.559126 2_1:+19352589 Msa0199920:CDS
GCAGAAATTGGCTTTGACGG+TGG 0.560510 2_1:-19352633 None:intergenic
TTATCTGATGGAACTCGGAA+TGG 0.563103 2_1:+19354679 Msa0199920:CDS
GCTTACAACTCTTGAGATCA+GGG 0.568117 2_1:+19354439 Msa0199920:CDS
GCAGCGGGTGCAGCTGCTGG+TGG 0.568432 2_1:-19352687 None:intergenic
TGCAACAACAAACATAGCAG+CGG 0.568924 2_1:-19352703 None:intergenic
GCTGCTGGTGGTGAGTTGGG+TGG 0.569013 2_1:-19352675 None:intergenic
GATTCAAAGAATTTCATGGT+GGG 0.572446 2_1:-19354884 None:intergenic
GCATGTTTCAGGTCAGAAGA+TGG 0.576797 2_1:+19355580 Msa0199920:three_prime_UTR
AGAAATTCTAGTGGATGTAG+TGG 0.577348 2_1:+19354505 Msa0199920:CDS
TAGTGTGGAATTGAAATTGT+GGG 0.578779 2_1:-19352796 None:intergenic
AGCAGAAAAGGAAGAAGCCA+AGG 0.582063 2_1:+19354186 Msa0199920:CDS
AATGTACTTCCGTTCTCTAG+GGG 0.585781 2_1:+19355105 Msa0199920:CDS
ACTTTCTTAGAGTCTACCGC+TGG 0.586538 2_1:-19354593 None:intergenic
GAAATTCTTTGAATCTTTAG+GGG 0.590570 2_1:+19354892 Msa0199920:CDS
CATAGGTCGAACGATAACTT+CGG 0.591001 2_1:+19355674 Msa0199920:three_prime_UTR
GGAGGGTAAAATTAAGCCAG+TGG 0.594688 2_1:+19354760 Msa0199920:CDS
TGAATCTTTAGGGGTTGACA+AGG 0.598289 2_1:+19354901 Msa0199920:CDS
AGAAAAGAAGACCCTTGTAG+AGG 0.600416 2_1:-19353990 None:intergenic
GCAACAACAAACATAGCAGC+GGG 0.601619 2_1:-19352702 None:intergenic
ATTGCTTATCTGATGGAACT+CGG 0.604771 2_1:+19354674 Msa0199920:CDS
GGCGCATAATAGTCCTAACC+TGG 0.607951 2_1:-19354709 None:intergenic
AGACTGATTCCACATAATTG+AGG 0.610049 2_1:-19354845 None:intergenic
TATTGTTAGTTACAGTGTAG+AGG 0.611669 2_1:+19355063 Msa0199920:CDS
ATAGGTCGAACGATAACTTC+GGG 0.612763 2_1:+19355675 Msa0199920:three_prime_UTR
ACCGCTGGACTAGGATTGGG+AGG 0.615626 2_1:-19354578 None:intergenic
TAGGGGTTGACAAGGAACAA+TGG 0.616153 2_1:+19354909 Msa0199920:CDS
GAGGAAGGTTCCGGTAGCTG+TGG 0.616413 2_1:-19352599 None:intergenic
CAACATCAACCCCTAGAGAA+CGG 0.618334 2_1:-19355114 None:intergenic
CTGCGTGCTATAAGTTAGCA+GGG 0.619373 2_1:-19354957 None:intergenic
ACTCGGAATGGATACTGACC+AGG 0.623274 2_1:+19354691 Msa0199920:CDS
GAATCACTTTACGAAGAGCA+TGG 0.623459 2_1:+19354482 Msa0199920:CDS
ATAGTGTGGAATTGAAATTG+TGG 0.623674 2_1:-19352797 None:intergenic
GGGTTTGAGCAATGCAAATG+CGG 0.625434 2_1:+19354237 Msa0199920:CDS
TATACCACTCACTCGAGACA+CGG 0.626260 2_1:-19354621 None:intergenic
TTGTAGCAAACAAACCTGAA+AGG 0.629612 2_1:-19354336 None:intergenic
TCAGATTTATCCTTAACGGG+TGG 0.631816 2_1:-19354542 None:intergenic
GACGAAGATTTCCCTCAGCA+GGG 0.635800 2_1:-19354646 None:intergenic
AAAGCCGTGTCTCGAGTGAG+TGG 0.646198 2_1:+19354617 Msa0199920:CDS
ACCTCCCAATCCTAGTCCAG+CGG 0.646786 2_1:+19354577 Msa0199920:CDS
GCTGGACTAGGATTGGGAGG+TGG 0.647159 2_1:-19354575 None:intergenic
AGAGCATGGAGAAATTCTAG+TGG 0.648996 2_1:+19354496 Msa0199920:CDS
GAGTGGTATAGACCCTGCTG+AGG 0.656302 2_1:+19354634 Msa0199920:CDS
GAACGGAAGTACATTGCTGT+CGG 0.657257 2_1:-19355097 None:intergenic
TCAACTTCCTTCCTCTACAA+GGG 0.663747 2_1:+19353979 Msa0199920:CDS
AGTGGTATAGACCCTGCTGA+GGG 0.666006 2_1:+19354635 Msa0199920:CDS
GTGGAATTGAAATTGTGGGG+CGG 0.683773 2_1:-19352792 None:intergenic
AGATTCAAAGAATTTCATGG+TGG 0.685200 2_1:-19354885 None:intergenic
GGCGTCTCAGAAGAGAACAT+AGG 0.686324 2_1:+19355016 Msa0199920:CDS
TGGTGGGTAGGTGAGAACAA+TGG 0.719204 2_1:-19352655 None:intergenic
AGTGTGGAATTGAAATTGTG+GGG 0.742839 2_1:-19352795 None:intergenic
CTTGGAGAGAGGTTACACCG+TGG 0.810527 2_1:+19355213 Msa0199920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATAAGTCAAAA+CGG + chr2_1:19353645-19353664 Msa0199920:intron 10.0%
!!! TCAATACAATATTTCTATAT+TGG - chr2_1:19353263-19353282 None:intergenic 15.0%
!!! AAAGAAAAAAAAAAGCATAA+TGG - chr2_1:19353859-19353878 None:intergenic 15.0%
!!! ATAATGAGAATTTTTTCTTT+TGG - chr2_1:19354812-19354831 None:intergenic 15.0%
!!! TGTTTTTTCTTTTTCTTTTT+CGG + chr2_1:19355610-19355629 Msa0199920:three_prime_UTR 15.0%
!! TCAAATTCTCAATAAAGATA+AGG + chr2_1:19352920-19352939 Msa0199920:intron 20.0%
!! CAAATTCTCAATAAAGATAA+GGG + chr2_1:19352921-19352940 Msa0199920:intron 20.0%
!!! AGTCAATAATTTGTTGTTAT+CGG + chr2_1:19353317-19353336 Msa0199920:intron 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr2_1:19353419-19353438 None:intergenic 20.0%
!! ATTAAGTGATTATAACATAG+AGG + chr2_1:19353437-19353456 Msa0199920:intron 20.0%
!! TTAAGTGATTATAACATAGA+GGG + chr2_1:19353438-19353457 Msa0199920:intron 20.0%
!! ATTATAGTATTACTGAAACT+CGG + chr2_1:19353920-19353939 Msa0199920:intron 20.0%
!!! TAATAACTTTCCTTTTACAT+TGG + chr2_1:19354374-19354393 Msa0199920:intron 20.0%
!! TAAAGATTCAAAGAATTTCA+TGG - chr2_1:19354891-19354910 None:intergenic 20.0%
!! ATGAAATTCTTTGAATCTTT+AGG + chr2_1:19354890-19354909 Msa0199920:CDS 20.0%
!! TGAAATTCTTTGAATCTTTA+GGG + chr2_1:19354891-19354910 Msa0199920:CDS 20.0%
!! AAAATAAAGAAAATGCAAGT+TGG + chr2_1:19355496-19355515 Msa0199920:CDS 20.0%
!!! AAAGTCTCAATTTTCAATAT+CGG - chr2_1:19355557-19355576 None:intergenic 20.0%
!! AAAAAATAAAAATTGGTTGC+AGG - chr2_1:19355769-19355788 None:intergenic 20.0%
!!! AACCAATTTTTATTTTTTGC+AGG + chr2_1:19355771-19355790 Msa0199920:three_prime_UTR 20.0%
!! ATCCTGCAAAAAATAAAAAT+TGG - chr2_1:19355776-19355795 None:intergenic 20.0%
!! TTTGTAAAATAAGTGATTAG+AGG + chr2_1:19355858-19355877 Msa0199920:three_prime_UTR 20.0%
!!! ATCTTTATTGGTTTTAAGAG+TGG - chr2_1:19352750-19352769 None:intergenic 25.0%
!! GAGAAAGTTTTCATCTTTAT+TGG - chr2_1:19352762-19352781 None:intergenic 25.0%
! AGACATTGATAGATGAAAAT+AGG - chr2_1:19352858-19352877 None:intergenic 25.0%
!! TAAGCAAAAGTCTACATTTT+AGG + chr2_1:19353019-19353038 Msa0199920:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr2_1:19353118-19353137 Msa0199920:intron 25.0%
! AGAAGTTAGTTGTTTAAGAA+TGG + chr2_1:19353153-19353172 Msa0199920:intron 25.0%
! CCAAATCTTAAATTTGGATT+TGG - chr2_1:19353202-19353221 None:intergenic 25.0%
!! CCAAATCCAAATTTAAGATT+TGG + chr2_1:19353199-19353218 Msa0199920:intron 25.0%
! GCATTTCCAAATCTTAAATT+TGG - chr2_1:19353208-19353227 None:intergenic 25.0%
!!! CCACTAGTTTTTTTTTTGAA+GGG - chr2_1:19353379-19353398 None:intergenic 25.0%
! TAAGTGATTATAACATAGAG+GGG + chr2_1:19353439-19353458 Msa0199920:intron 25.0%
!!! TATCCTAAAAGCACTTTTTT+TGG - chr2_1:19353580-19353599 None:intergenic 25.0%
! ACTTACGAAAAAACAACTTT+AGG - chr2_1:19353682-19353701 None:intergenic 25.0%
!!! TAACCTTGTTTTTGAAGAAA+CGG + chr2_1:19354215-19354234 Msa0199920:CDS 25.0%
! GAAATTCTTTGAATCTTTAG+GGG + chr2_1:19354892-19354911 Msa0199920:CDS 25.0%
!! TTCAATTGTCCACAAAATTT+TGG + chr2_1:19355148-19355167 Msa0199920:CDS 25.0%
!!! GTTAAATTCCCTCAATTTTT+TGG + chr2_1:19355352-19355371 Msa0199920:CDS 25.0%
! AACTGTATCCAAAAAATTGA+GGG - chr2_1:19355363-19355382 None:intergenic 25.0%
! AAACTGTATCCAAAAAATTG+AGG - chr2_1:19355364-19355383 None:intergenic 25.0%
! TATTGAAAATTGAGACTTTC+AGG + chr2_1:19355558-19355577 Msa0199920:three_prime_UTR 25.0%
!!! TGGTGCTATTTATTAAAATG+AGG + chr2_1:19355909-19355928 Msa0199920:three_prime_UTR 25.0%
TAGTGTGGAATTGAAATTGT+GGG - chr2_1:19352799-19352818 None:intergenic 30.0%
ATAGTGTGGAATTGAAATTG+TGG - chr2_1:19352800-19352819 None:intergenic 30.0%
AGTGTAAGAGAAAAATAGTG+TGG - chr2_1:19352814-19352833 None:intergenic 30.0%
! TTTTCTCTTACACTTCCATA+AGG + chr2_1:19352820-19352839 Msa0199920:CDS 30.0%
CATTCATTTAATGATGCATG+TGG + chr2_1:19353044-19353063 Msa0199920:intron 30.0%
!!! CTTTTAGCTTTCTTAACTAG+TGG + chr2_1:19353353-19353372 Msa0199920:intron 30.0%
CCCTTCAAAAAAAAAACTAG+TGG + chr2_1:19353376-19353395 Msa0199920:intron 30.0%
!!! GCCACTAGTTTTTTTTTTGA+AGG - chr2_1:19353380-19353399 None:intergenic 30.0%
AATAGGCCCTAATTCTTAAA+GGG - chr2_1:19353402-19353421 None:intergenic 30.0%
AAATAGGCCCTAATTCTTAA+AGG - chr2_1:19353403-19353422 None:intergenic 30.0%
TTTAAGAATTAGGGCCTATT+TGG + chr2_1:19353402-19353421 Msa0199920:intron 30.0%
AAGTGATTATAACATAGAGG+GGG + chr2_1:19353440-19353459 Msa0199920:intron 30.0%
AATGTTAGTAATTAGCTGAC+AGG - chr2_1:19353550-19353569 None:intergenic 30.0%
!!! TAAAAGCACTTTTTTTGGAC+AGG - chr2_1:19353575-19353594 None:intergenic 30.0%
!!! TGTCCAAAAAAAGTGCTTTT+AGG + chr2_1:19353574-19353593 Msa0199920:intron 30.0%
! GATAGGTTGAAATCAACTTA+TGG + chr2_1:19353722-19353741 Msa0199920:intron 30.0%
ATTCGTTTGAGCTTATCAAT+TGG - chr2_1:19353801-19353820 None:intergenic 30.0%
CTGATGCAAAATCTTCATAT+TGG - chr2_1:19353956-19353975 None:intergenic 30.0%
! CAATATGAAGATTTTGCATC+AGG + chr2_1:19353954-19353973 Msa0199920:intron 30.0%
! TTCTTTTCTCAGGAAAAATC+TGG + chr2_1:19354004-19354023 Msa0199920:CDS 30.0%
!!! AACCTTGTTTTTGAAGAAAC+GGG + chr2_1:19354216-19354235 Msa0199920:CDS 30.0%
TCTCATTGACGTAATAATCA+GGG + chr2_1:19354411-19354430 Msa0199920:intron 30.0%
!!! GTTGAGTTTTTTCTTGAACT+TGG + chr2_1:19354782-19354801 Msa0199920:CDS 30.0%
TTCTCATTATCCTCACTAAA+AGG + chr2_1:19354822-19354841 Msa0199920:CDS 30.0%
GATTCAAAGAATTTCATGGT+GGG - chr2_1:19354887-19354906 None:intergenic 30.0%
AGATTCAAAGAATTTCATGG+TGG - chr2_1:19354888-19354907 None:intergenic 30.0%
CACTGTAACTAACAATAGTT+GGG - chr2_1:19355060-19355079 None:intergenic 30.0%
ACACTGTAACTAACAATAGT+TGG - chr2_1:19355061-19355080 None:intergenic 30.0%
TATTGTTAGTTACAGTGTAG+AGG + chr2_1:19355063-19355082 Msa0199920:CDS 30.0%
! ATGCTAAGACCAAAATTTTG+TGG - chr2_1:19355160-19355179 None:intergenic 30.0%
!!! AAATTTTGGTCTTAGCATTG+AGG + chr2_1:19355162-19355181 Msa0199920:CDS 30.0%
TCCAAGAAAAATTGTGTTAC+GGG - chr2_1:19355199-19355218 None:intergenic 30.0%
CTCCAAGAAAAATTGTGTTA+CGG - chr2_1:19355200-19355219 None:intergenic 30.0%
GGGATTATGATTATGAGATA+TGG + chr2_1:19355244-19355263 Msa0199920:CDS 30.0%
GTCAAAAAGTAATCCCATTT+CGG - chr2_1:19355307-19355326 None:intergenic 30.0%
!!! ATGGGATTACTTTTTGACTA+TGG + chr2_1:19355309-19355328 Msa0199920:CDS 30.0%
! ATTTAACCAGCTCAGATTTT+GGG - chr2_1:19355339-19355358 None:intergenic 30.0%
! AATTTAACCAGCTCAGATTT+TGG - chr2_1:19355340-19355359 None:intergenic 30.0%
!! AAAGAAAATGCAAGTTGGTT+AGG + chr2_1:19355501-19355520 Msa0199920:CDS 30.0%
!!! AAGCATTGAAACTGTTTTTG+AGG + chr2_1:19355723-19355742 Msa0199920:three_prime_UTR 30.0%
!!! AGCATTGAAACTGTTTTTGA+GGG + chr2_1:19355724-19355743 Msa0199920:three_prime_UTR 30.0%
TAATAAATAGCACCAAAACC+TGG - chr2_1:19355904-19355923 None:intergenic 30.0%
AGTGTGGAATTGAAATTGTG+GGG - chr2_1:19352798-19352817 None:intergenic 35.0%
AGGAAAGAGATTGTACCTTA+TGG - chr2_1:19352838-19352857 None:intergenic 35.0%
TATTAGTTACATACACCCTC+CGG + chr2_1:19352987-19353006 Msa0199920:intron 35.0%
! CTTTTGCTTATATCAGTGAC+CGG - chr2_1:19353009-19353028 None:intergenic 35.0%
! TAGTGGCCCTTTAAGAATTA+GGG + chr2_1:19353393-19353412 Msa0199920:intron 35.0%
AGTGATTATAACATAGAGGG+GGG + chr2_1:19353441-19353460 Msa0199920:intron 35.0%
AGTATCCGAGTTCAAAACTA+CGG + chr2_1:19353507-19353526 Msa0199920:intron 35.0%
CCTATCTTCATAAGCTATCA+AGG - chr2_1:19353708-19353727 None:intergenic 35.0%
! CCTTGATAGCTTATGAAGAT+AGG + chr2_1:19353705-19353724 Msa0199920:intron 35.0%
GGTTGCATGCTATTCATATA+AGG - chr2_1:19353838-19353857 None:intergenic 35.0%
TAGATGTTGCAATTGACATG+AGG + chr2_1:19354053-19354072 Msa0199920:intron 35.0%
ATAAGCATTAGACCTTCCAT+TGG + chr2_1:19354100-19354119 Msa0199920:intron 35.0%
AAACAAGGTTAATACAGCCT+TGG - chr2_1:19354206-19354225 None:intergenic 35.0%
!!! ACCTTGTTTTTGAAGAAACG+GGG + chr2_1:19354217-19354236 Msa0199920:CDS 35.0%
GAGAGAAGGTGATCAATAAA+AGG - chr2_1:19354286-19354305 None:intergenic 35.0%
TTCACTCTAGACACAAAACT+TGG + chr2_1:19354311-19354330 Msa0199920:CDS 35.0%
TTGTAGCAAACAAACCTGAA+AGG - chr2_1:19354339-19354358 None:intergenic 35.0%
TTAGCAGGATCCAATGTAAA+AGG - chr2_1:19354387-19354406 None:intergenic 35.0%
GTCTCATTGACGTAATAATC+AGG + chr2_1:19354410-19354429 Msa0199920:intron 35.0%
! AGAAATTCTAGTGGATGTAG+TGG + chr2_1:19354505-19354524 Msa0199920:CDS 35.0%
TGCGTCAGATTTATCCTTAA+CGG - chr2_1:19354549-19354568 None:intergenic 35.0%
TCCTCATATTGCTTATCTGA+TGG + chr2_1:19354667-19354686 Msa0199920:CDS 35.0%
TCCATCAGATAAGCAATATG+AGG - chr2_1:19354671-19354690 None:intergenic 35.0%
ATTGCTTATCTGATGGAACT+CGG + chr2_1:19354674-19354693 Msa0199920:CDS 35.0%
AACTATAGTAGGCAAAAGCT+GGG - chr2_1:19354739-19354758 None:intergenic 35.0%
AAACTATAGTAGGCAAAAGC+TGG - chr2_1:19354740-19354759 None:intergenic 35.0%
! AGCTTTTGCCTACTATAGTT+TGG + chr2_1:19354739-19354758 Msa0199920:CDS 35.0%
! TTTTGCCTACTATAGTTTGG+AGG + chr2_1:19354742-19354761 Msa0199920:CDS 35.0%
TTTGCCTACTATAGTTTGGA+GGG + chr2_1:19354743-19354762 Msa0199920:CDS 35.0%
TTTACCCTCCAAACTATAGT+AGG - chr2_1:19354750-19354769 None:intergenic 35.0%
TCAAGAAAAAACTCAACCAC+TGG - chr2_1:19354779-19354798 None:intergenic 35.0%
! ATAATTGAGGCCTTTTAGTG+AGG - chr2_1:19354835-19354854 None:intergenic 35.0%
ACTAAAAGGCCTCAATTATG+TGG + chr2_1:19354836-19354855 Msa0199920:CDS 35.0%
! AGACTGATTCCACATAATTG+AGG - chr2_1:19354848-19354867 None:intergenic 35.0%
! GTAGATTTTCTCCACGAATT+TGG + chr2_1:19354995-19355014 Msa0199920:CDS 35.0%
GTGGACAATTGAATAGAAGA+AGG - chr2_1:19355141-19355160 None:intergenic 35.0%
! TTGTGTTACGGGCTTTATAT+TGG - chr2_1:19355188-19355207 None:intergenic 35.0%
! ACACAATTTTTCTTGGAGAG+AGG + chr2_1:19355202-19355221 Msa0199920:CDS 35.0%
CATAATCCCAATTTCTTCCA+CGG - chr2_1:19355233-19355252 None:intergenic 35.0%
TGAGAATTTGATGCCGAAAT+GGG + chr2_1:19355291-19355310 Msa0199920:CDS 35.0%
TTGCAGTTATACTGGAACAT+AGG + chr2_1:19355657-19355676 Msa0199920:three_prime_UTR 35.0%
!!! AAACTGTTTTTGAGGGACTT+TGG + chr2_1:19355731-19355750 Msa0199920:three_prime_UTR 35.0%
! AAGTGATTAGAGGATGCTTT+TGG + chr2_1:19355868-19355887 Msa0199920:three_prime_UTR 35.0%
!!! TTTGACGGTGGTTTTGATGA+CGG - chr2_1:19352624-19352643 None:intergenic 40.0%
!! ATGGCAGAAATTGGCTTTGA+CGG - chr2_1:19352639-19352658 None:intergenic 40.0%
GTGAGAACAATGGCAGAAAT+TGG - chr2_1:19352648-19352667 None:intergenic 40.0%
TGCAACAACAAACATAGCAG+CGG - chr2_1:19352706-19352725 None:intergenic 40.0%
GAGTGGAATATCACTGCAAA+TGG - chr2_1:19352733-19352752 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr2_1:19353121-19353140 Msa0199920:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr2_1:19353122-19353141 Msa0199920:intron 40.0%
AACTTCTTACATACACCCTC+CGG - chr2_1:19353140-19353159 None:intergenic 40.0%
! CTAGTGGCCCTTTAAGAATT+AGG + chr2_1:19353392-19353411 Msa0199920:intron 40.0%
ATTATAACATAGAGGGGGGT+GGG + chr2_1:19353445-19353464 Msa0199920:intron 40.0%
TCAAACGAATCAATCCAAGC+AGG + chr2_1:19353811-19353830 Msa0199920:intron 40.0%
CAAACGAATCAATCCAAGCA+GGG + chr2_1:19353812-19353831 Msa0199920:intron 40.0%
TATTCATATAAGGCCCTGCT+TGG - chr2_1:19353828-19353847 None:intergenic 40.0%
TCAACTTCCTTCCTCTACAA+GGG + chr2_1:19353979-19353998 Msa0199920:CDS 40.0%
AGAAAAGAAGACCCTTGTAG+AGG - chr2_1:19353993-19354012 None:intergenic 40.0%
! TACAAGGGTCTTCTTTTCTC+AGG + chr2_1:19353994-19354013 Msa0199920:CDS 40.0%
! TTCCTTTTCTGCTGCCAATA+GGG - chr2_1:19354179-19354198 None:intergenic 40.0%
ACCCCGTTTCTTCAAAAACA+AGG - chr2_1:19354221-19354240 None:intergenic 40.0%
!! TAGAGTGAAGCTTTGAGAGA+AGG - chr2_1:19354300-19354319 None:intergenic 40.0%
CACAAAACTTGGTACCTTTC+AGG + chr2_1:19354322-19354341 Msa0199920:CDS 40.0%
AGCTTACAACTCTTGAGATC+AGG + chr2_1:19354438-19354457 Msa0199920:CDS 40.0%
GCTTACAACTCTTGAGATCA+GGG + chr2_1:19354439-19354458 Msa0199920:CDS 40.0%
GAATCACTTTACGAAGAGCA+TGG + chr2_1:19354482-19354501 Msa0199920:CDS 40.0%
AGAGCATGGAGAAATTCTAG+TGG + chr2_1:19354496-19354515 Msa0199920:CDS 40.0%
! TTATCCTTAACGGGTGGATT+TGG - chr2_1:19354539-19354558 None:intergenic 40.0%
TCAGATTTATCCTTAACGGG+TGG - chr2_1:19354545-19354564 None:intergenic 40.0%
GCGTCAGATTTATCCTTAAC+GGG - chr2_1:19354548-19354567 None:intergenic 40.0%
TTATCTGATGGAACTCGGAA+TGG + chr2_1:19354679-19354698 Msa0199920:CDS 40.0%
! TGAATCTTTAGGGGTTGACA+AGG + chr2_1:19354901-19354920 Msa0199920:CDS 40.0%
CAATGTACTTCCGTTCTCTA+GGG + chr2_1:19355104-19355123 Msa0199920:CDS 40.0%
AATGTACTTCCGTTCTCTAG+GGG + chr2_1:19355105-19355124 Msa0199920:CDS 40.0%
! GCCCGTAACACAATTTTTCT+TGG + chr2_1:19355195-19355214 Msa0199920:CDS 40.0%
GTTACACCGTGGAAGAAATT+GGG + chr2_1:19355224-19355243 Msa0199920:CDS 40.0%
CTGAGAATTTGATGCCGAAA+TGG + chr2_1:19355290-19355309 Msa0199920:CDS 40.0%
! TTTTTCACGCGTGCATATCT+CGG - chr2_1:19355403-19355422 None:intergenic 40.0%
TATGCACGCGTGAAAAATTC+TGG + chr2_1:19355406-19355425 Msa0199920:CDS 40.0%
ATGCACGCGTGAAAAATTCT+GGG + chr2_1:19355407-19355426 Msa0199920:CDS 40.0%
GGTGAGATTACTGTTGAATC+AGG + chr2_1:19355429-19355448 Msa0199920:CDS 40.0%
! GGATTCTTTTTACAGCAGCA+TGG + chr2_1:19355522-19355541 Msa0199920:exon 40.0%
GCGAAAAGTTGCAGTTATAC+TGG + chr2_1:19355649-19355668 Msa0199920:three_prime_UTR 40.0%
CATAGGTCGAACGATAACTT+CGG + chr2_1:19355674-19355693 Msa0199920:three_prime_UTR 40.0%
ATAGGTCGAACGATAACTTC+GGG + chr2_1:19355675-19355694 Msa0199920:three_prime_UTR 40.0%
GCAACAACAAACATAGCAGC+GGG - chr2_1:19352705-19352724 None:intergenic 45.0%
ATTGTGGGGCGGTTGAATTA+AGG - chr2_1:19352784-19352803 None:intergenic 45.0%
GTGGAATTGAAATTGTGGGG+CGG - chr2_1:19352795-19352814 None:intergenic 45.0%
TGCTTATATCAGTGACCGGA+GGG - chr2_1:19353005-19353024 None:intergenic 45.0%
TTGCTTATATCAGTGACCGG+AGG - chr2_1:19353006-19353025 None:intergenic 45.0%
AAATGCTAACCAGTGTCCAG+TGG + chr2_1:19353222-19353241 Msa0199920:intron 45.0%
GATTATAACATAGAGGGGGG+TGG + chr2_1:19353444-19353463 Msa0199920:intron 45.0%
TTATAACATAGAGGGGGGTG+GGG + chr2_1:19353446-19353465 Msa0199920:intron 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG + chr2_1:19353470-19353489 Msa0199920:intron 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG + chr2_1:19353471-19353490 Msa0199920:intron 45.0%
!!! GATCGCCGTAGTTTTGAACT+CGG - chr2_1:19353515-19353534 None:intergenic 45.0%
CTCAACTTCCTTCCTCTACA+AGG + chr2_1:19353978-19353997 Msa0199920:CDS 45.0%
AAGAAGACCCTTGTAGAGGA+AGG - chr2_1:19353989-19354008 None:intergenic 45.0%
! GAGTACAAAGCACCAATGGA+AGG - chr2_1:19354115-19354134 None:intergenic 45.0%
! GTCTGAGTACAAAGCACCAA+TGG - chr2_1:19354119-19354138 None:intergenic 45.0%
! TTTTCTGCTGCCAATAGGGT+TGG - chr2_1:19354175-19354194 None:intergenic 45.0%
AACCCTATTGGCAGCAGAAA+AGG + chr2_1:19354174-19354193 Msa0199920:CDS 45.0%
! CTTCCTTTTCTGCTGCCAAT+AGG - chr2_1:19354180-19354199 None:intergenic 45.0%
AGCAGAAAAGGAAGAAGCCA+AGG + chr2_1:19354186-19354205 Msa0199920:CDS 45.0%
GGGTTTGAGCAATGCAAATG+CGG + chr2_1:19354237-19354256 Msa0199920:CDS 45.0%
CGTCAATGAGACTGATTAGC+AGG - chr2_1:19354402-19354421 None:intergenic 45.0%
CTATCCAAATCCACCCGTTA+AGG + chr2_1:19354532-19354551 Msa0199920:CDS 45.0%
ACTTTCTTAGAGTCTACCGC+TGG - chr2_1:19354596-19354615 None:intergenic 45.0%
TATACCACTCACTCGAGACA+CGG - chr2_1:19354624-19354643 None:intergenic 45.0%
GAATGGATACTGACCAGGTT+AGG + chr2_1:19354696-19354715 Msa0199920:CDS 45.0%
AGTAGGCAAAAGCTGGGAAT+CGG - chr2_1:19354733-19354752 None:intergenic 45.0%
GGAGGGTAAAATTAAGCCAG+TGG + chr2_1:19354760-19354779 Msa0199920:CDS 45.0%
TAGGGGTTGACAAGGAACAA+TGG + chr2_1:19354909-19354928 Msa0199920:CDS 45.0%
AGGGGTTGACAAGGAACAAT+GGG + chr2_1:19354910-19354929 Msa0199920:CDS 45.0%
TGCTATAAGTTAGCAGGGCT+GGG - chr2_1:19354955-19354974 None:intergenic 45.0%
CTGCGTGCTATAAGTTAGCA+GGG - chr2_1:19354960-19354979 None:intergenic 45.0%
TCTGCGTGCTATAAGTTAGC+AGG - chr2_1:19354961-19354980 None:intergenic 45.0%
! GAACGGAAGTACATTGCTGT+CGG - chr2_1:19355100-19355119 None:intergenic 45.0%
GCAATGTACTTCCGTTCTCT+AGG + chr2_1:19355103-19355122 Msa0199920:CDS 45.0%
CAACATCAACCCCTAGAGAA+CGG - chr2_1:19355117-19355136 None:intergenic 45.0%
GGTTACACCGTGGAAGAAAT+TGG + chr2_1:19355223-19355242 Msa0199920:CDS 45.0%
GGATTACCCAAAATCTGAGC+TGG + chr2_1:19355330-19355349 Msa0199920:CDS 45.0%
TGCACGCGTGAAAAATTCTG+GGG + chr2_1:19355408-19355427 Msa0199920:CDS 45.0%
GAGACTTTCAGGCATGTTTC+AGG + chr2_1:19355569-19355588 Msa0199920:three_prime_UTR 45.0%
! GCATGTTTCAGGTCAGAAGA+TGG + chr2_1:19355580-19355599 Msa0199920:three_prime_UTR 45.0%
!! GCTTTTGGTAACATGACACC+AGG + chr2_1:19355883-19355902 Msa0199920:three_prime_UTR 45.0%
! GGTAACATGACACCAGGTTT+TGG + chr2_1:19355889-19355908 Msa0199920:three_prime_UTR 45.0%
TCACCTATAGCCACAGCTAC+CGG + chr2_1:19352589-19352608 Msa0199920:CDS 50.0%
!! TTGATGACGGAGGAAGGTTC+CGG - chr2_1:19352611-19352630 None:intergenic 50.0%
!!! GTGGTTTTGATGACGGAGGA+AGG - chr2_1:19352617-19352636 None:intergenic 50.0%
!! GCAGAAATTGGCTTTGACGG+TGG - chr2_1:19352636-19352655 None:intergenic 50.0%
! TGGTGGGTAGGTGAGAACAA+TGG - chr2_1:19352658-19352677 None:intergenic 50.0%
ACTGTTGCCTCCAACCCTAT+TGG + chr2_1:19354162-19354181 Msa0199920:CDS 50.0%
CTAGGATTGGGAGGTGGAAT+TGG - chr2_1:19354572-19354591 None:intergenic 50.0%
! TCTACCGCTGGACTAGGATT+GGG - chr2_1:19354584-19354603 None:intergenic 50.0%
TTAGAGTCTACCGCTGGACT+AGG - chr2_1:19354590-19354609 None:intergenic 50.0%
AGTGGTATAGACCCTGCTGA+GGG + chr2_1:19354635-19354654 Msa0199920:CDS 50.0%
GACGAAGATTTCCCTCAGCA+GGG - chr2_1:19354649-19354668 None:intergenic 50.0%
ACTCGGAATGGATACTGACC+AGG + chr2_1:19354691-19354710 Msa0199920:CDS 50.0%
GGCGCATAATAGTCCTAACC+TGG - chr2_1:19354712-19354731 None:intergenic 50.0%
AAGTTAGCAGGGCTGGGAAA+CGG - chr2_1:19354949-19354968 None:intergenic 50.0%
GTGCTATAAGTTAGCAGGGC+TGG - chr2_1:19354956-19354975 None:intergenic 50.0%
!! CTTCTGAGACGCCAAATTCG+TGG - chr2_1:19355009-19355028 None:intergenic 50.0%
GGCGTCTCAGAAGAGAACAT+AGG + chr2_1:19355016-19355035 Msa0199920:CDS 50.0%
!! CGTTCTCTAGGGGTTGATGT+TGG + chr2_1:19355115-19355134 Msa0199920:CDS 50.0%
GTTCCGGTAGCTGTGGCTAT+AGG - chr2_1:19352595-19352614 None:intergenic 55.0%
!!! GACGGTGGTTTTGATGACGG+AGG - chr2_1:19352621-19352640 None:intergenic 55.0%
GTTTCCTCGACGAGTTCCAC+TGG - chr2_1:19353241-19353260 None:intergenic 55.0%
TCTGCTGCCAATAGGGTTGG+AGG - chr2_1:19354172-19354191 None:intergenic 55.0%
ACCTCCCAATCCTAGTCCAG+CGG + chr2_1:19354577-19354596 Msa0199920:CDS 55.0%
! GTCTACCGCTGGACTAGGAT+TGG - chr2_1:19354585-19354604 None:intergenic 55.0%
AAAGCCGTGTCTCGAGTGAG+TGG + chr2_1:19354617-19354636 Msa0199920:CDS 55.0%
GAGTGGTATAGACCCTGCTG+AGG + chr2_1:19354634-19354653 Msa0199920:CDS 55.0%
GGACGAAGATTTCCCTCAGC+AGG - chr2_1:19354650-19354669 None:intergenic 55.0%
CTTGGAGAGAGGTTACACCG+TGG + chr2_1:19355213-19355232 Msa0199920:CDS 55.0%
GAGGAAGGTTCCGGTAGCTG+TGG - chr2_1:19352602-19352621 None:intergenic 60.0%
!! TGGTGAGTTGGGTGGTGGGT+AGG - chr2_1:19352670-19352689 None:intergenic 60.0%
! CTGGTGGTGAGTTGGGTGGT+GGG - chr2_1:19352674-19352693 None:intergenic 60.0%
! GCAGCTGCTGGTGGTGAGTT+GGG - chr2_1:19352681-19352700 None:intergenic 60.0%
! TGCAGCTGCTGGTGGTGAGT+TGG - chr2_1:19352682-19352701 None:intergenic 60.0%
CGACGAGTTCCACTGGACAC+TGG - chr2_1:19353234-19353253 None:intergenic 60.0%
GTGTCCAGTGGAACTCGTCG+AGG + chr2_1:19353234-19353253 Msa0199920:intron 60.0%
! GCTGGACTAGGATTGGGAGG+TGG - chr2_1:19354578-19354597 None:intergenic 60.0%
! ACCGCTGGACTAGGATTGGG+AGG - chr2_1:19354581-19354600 None:intergenic 60.0%
! GCTGGTGGTGAGTTGGGTGG+TGG - chr2_1:19352675-19352694 None:intergenic 65.0%
! GCTGCTGGTGGTGAGTTGGG+TGG - chr2_1:19352678-19352697 None:intergenic 65.0%
ATAGCAGCGGGTGCAGCTGC+TGG - chr2_1:19352693-19352712 None:intergenic 65.0%
GGGGGGTGGGGTAGCTCAAC+TGG + chr2_1:19353458-19353477 Msa0199920:intron 70.0%
GCAGCGGGTGCAGCTGCTGG+TGG - chr2_1:19352690-19352709 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19352576 19355944 19352576 ID=Msa0199920;Name=Msa0199920
chr2_1 mRNA 19352576 19355944 19352576 ID=Msa0199920-mRNA-1;Parent=Msa0199920;Name=Msa0199920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.75|1|1|1|4|422|537
chr2_1 exon 19352576 19352841 19352576 ID=Msa0199920-mRNA-1:exon:8031;Parent=Msa0199920-mRNA-1
chr2_1 exon 19353976 19354025 19353976 ID=Msa0199920-mRNA-1:exon:8032;Parent=Msa0199920-mRNA-1
chr2_1 exon 19354137 19354343 19354137 ID=Msa0199920-mRNA-1:exon:8033;Parent=Msa0199920-mRNA-1
chr2_1 exon 19354432 19355944 19354432 ID=Msa0199920-mRNA-1:exon:8034;Parent=Msa0199920-mRNA-1
chr2_1 CDS 19352576 19352841 19352576 ID=Msa0199920-mRNA-1:cds;Parent=Msa0199920-mRNA-1
chr2_1 CDS 19353976 19354025 19353976 ID=Msa0199920-mRNA-1:cds;Parent=Msa0199920-mRNA-1
chr2_1 CDS 19354137 19354343 19354137 ID=Msa0199920-mRNA-1:cds;Parent=Msa0199920-mRNA-1
chr2_1 CDS 19354432 19355522 19354432 ID=Msa0199920-mRNA-1:cds;Parent=Msa0199920-mRNA-1
chr2_1 three_prime_UTR 19355523 19355944 19355523 ID=Msa0199920-mRNA-1:three_prime_utr;Parent=Msa0199920-mRNA-1
Gene Sequence

>Msa0199920

TTTGTCTCAGCTCTCACCTATAGCCACAGCTACCGGAACCTTCCTCCGTCATCAAAACCACCGTCAAAGCCAATTTCTGCCATTGTTCTCACCTACCCACCACCCAACTCACCACCAGCAGCTGCACCCGCTGCTATGTTTGTTGTTGCATCTTCCATTTGCAGTGATATTCCACTCTTAAAACCAATAAAGATGAAAACTTTCTCCTTAATTCAACCGCCCCACAATTTCAATTCCACACTATTTTTCTCTTACACTTCCATAAGGACTCAACTTCCTTCCTCTACAAGGGTCTTCTTTTCTCAGGAAAAATCTGACACAGATGAGTCATTAAACGTAAAACTGTTGCCTCCAACCCTATTGGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAAGAAACGGGGTTTGAGCAATGCAAATGCGGCAAGAACGATTAACAAGTCAGATCCTTTTATTGATCACCTTCTCTCAAAGCTTCACTCTAGACACAAAACTTGGTACCTTTCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTCTTATCTCTTATCTCGAATCACTTTACGAAGAGCATGGAGAAATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCCGTTAAGGATAAATCTGACGCACCAATTCCACCTCCCAATCCTAGTCCAGCGGTAGACTCTAAGAAAGTTAAAGCCGTGTCTCGAGTGAGTGGTATAGACCCTGCTGAGGGAAATCTTCGTCCTCATATTGCTTATCTGATGGAACTCGGAATGGATACTGACCAGGTTAGGACTATTATGCGCCGATTCCCAGCTTTTGCCTACTATAGTTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTACCAAAAGAAAAAATTCTCATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTAAAAATCTTAAGCCCACCATGAAATTCTTTGAATCTTTAGGGGTTGACAAGGAACAATGGGCGAAAGTGATCTACCGTTTCCCAGCCCTGCTAACTTATAGCACGCAGAAGATTAATGAAAGTGTAGATTTTCTCCACGAATTTGGCGTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCAACTATTGTTAGTTACAGTGTAGAGGACAATCTTCGACCGACAGCAATGTACTTCCGTTCTCTAGGGGTTGATGTTGGCCTTCTTCTATTCAATTGTCCACAAAATTTTGGTCTTAGCATTGAGGCCAATATAAAGCCCGTAACACAATTTTTCTTGGAGAGAGGTTACACCGTGGAAGAAATTGGGATTATGATTATGAGATATGGAATGTTGTACACATTCAGCTTGACTGAGAATTTGATGCCGAAATGGGATTACTTTTTGACTATGGATTACCCAAAATCTGAGCTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAGCAAAGAATTAAACCGAGATATGCACGCGTGAAAAATTCTGGGGTGAGATTACTGTTGAATCAGGTTCTTTCACTGTCAAGCAGCAACTTTGAAGAGATCTTAAGAAAGAAAATAAAGAAAATGCAAGTTGGTTAG
Protein sequence

>Msa0199920

FVSALTYSHSYRNLPPSSKPPSKPISAIVLTYPPPNSPPAAAPAAMFVVASSICSDIPLLKPIKMKTFSLIQPPHNFNSTLFFSYTSIRTQLPSSTRVFFSQEKSDTDESLNVKLLPPTLLAAEKEEAKAVLTLFLKKRGLSNANAARTINKSDPFIDHLLSKLHSRHKTWYLSGRELTTLEIRDALISYLESLYEEHGEILVDVVENYPNPPVKDKSDAPIPPPNPSPAVDSKKVKAVSRVSGIDPAEGNLRPHIAYLMELGMDTDQVRTIMRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKILIILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESVDFLHEFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTVEEIGIMIMRYGMLYTFSLTENLMPKWDYFLTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKNSGVRLLLNQVLSLSSSNFEEILRKKIKKMQVG*