AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199980 MtrunA17_Chr3g0082121 72.117 685 181 3 69 752 2 677 0.0 1003
Msa0199980 MtrunA17_Chr2g0324011 47.314 577 294 6 111 680 10 583 0.0 530
Msa0199980 MtrunA17_Chr1g0164591 73.968 315 73 2 189 502 1 307 1.92e-171 495
Msa0199980 MtrunA17_Chr6g0458391 41.653 605 308 12 75 666 194 766 4.00e-155 469
Msa0199980 MtrunA17_Chr6g0458391 37.594 133 80 3 110 241 90 220 2.83e-20 96.3
Msa0199980 MtrunA17_Chr1g0203721 38.473 655 391 8 102 746 54 706 2.01e-153 469
Msa0199980 MtrunA17_Chr5g0448761 34.504 655 410 12 111 751 60 709 1.26e-124 390
Msa0199980 MtrunA17_Chr1g0202341 33.388 605 384 10 75 665 10 609 4.05e-108 344
Msa0199980 MtrunA17_Chr8g0363841 32.689 569 359 10 112 665 18 577 1.44e-101 327
Msa0199980 MtrunA17_Chr2g0287651 33.087 677 391 18 94 736 45 693 4.48e-101 331
Msa0199980 MtrunA17_Chr2g0329031 29.456 662 433 15 106 752 7 649 3.49e-92 304
Msa0199980 MtrunA17_Chr1g0207551 29.000 600 400 8 111 699 34 618 1.91e-86 290
Msa0199980 MtrunA17_Chr7g0258861 50.347 288 134 7 111 392 10 294 3.25e-86 275
Msa0199980 MtrunA17_Chr5g0441581 30.757 647 400 17 111 734 32 653 9.09e-84 280
Msa0199980 MtrunA17_Chr2g0296781 32.394 568 355 13 115 665 1 556 1.86e-83 280
Msa0199980 MtrunA17_Chr5g0440451 29.800 651 412 13 101 727 35 664 3.01e-81 278
Msa0199980 MtrunA17_Chr3g0080351 28.248 662 420 14 111 750 76 704 1.77e-80 275
Msa0199980 MtrunA17_Chr3g0118611 34.521 449 275 9 289 727 122 561 1.89e-79 270
Msa0199980 MtrunA17_Chr2g0276841 30.728 563 379 10 108 662 67 626 7.39e-78 264
Msa0199980 MtrunA17_Chr5g0448511 31.915 470 312 4 273 737 1 467 1.55e-77 259
Msa0199980 MtrunA17_Chr1g0198761 31.303 591 373 16 100 666 32 613 3.34e-75 258
Msa0199980 MtrunA17_Chr1g0203051 29.412 561 347 13 117 652 85 621 5.24e-73 250
Msa0199980 MtrunA17_Chr1g0149131 92.857 112 8 0 389 500 1 112 1.64e-71 229
Msa0199980 MtrunA17_Chr2g0294841 29.125 594 396 14 91 668 26 610 1.74e-71 248
Msa0199980 MtrunA17_Chr6g0477261 32.438 447 282 9 234 665 4 445 1.50e-69 241
Msa0199980 MtrunA17_Chr2g0287061 28.947 570 343 14 111 667 183 703 3.82e-68 240
Msa0199980 MtrunA17_Chr2g0290391 27.327 666 434 19 110 748 50 692 2.90e-64 227
Msa0199980 MtrunA17_Chr1g0196541 28.850 565 373 12 115 662 1 553 5.17e-63 224
Msa0199980 MtrunA17_Chr2g0291581 27.332 611 377 16 81 665 52 621 1.20e-59 214
Msa0199980 MtrunA17_Chr2g0291591 27.754 472 329 6 115 583 68 530 2.74e-55 199
Msa0199980 MtrunA17_Chr5g0431001 28.958 480 308 12 71 522 9 483 3.31e-49 181
Msa0199980 MtrunA17_Chr5g0401121 65.116 129 41 1 87 215 36 160 8.44e-47 164
Msa0199980 MtrunA17_Chr7g0233911 34.507 142 78 4 79 213 3 136 1.62e-16 79.3
Msa0199980 MtrunA17_Chr2g0308841 22.581 217 159 5 458 667 15 229 3.00e-16 79.7
Msa0199980 MtrunA17_Chr4g0033611 42.056 107 56 3 111 215 76 178 5.22e-16 78.6
Msa0199980 MtrunA17_Chr7g0238821 41.284 109 59 4 115 221 1 106 6.77e-16 74.3
Msa0199980 MtrunA17_Chr2g0329421 40.187 107 58 3 111 215 27 129 1.14e-15 76.6
Msa0199980 MtrunA17_Chr3g0078041 38.462 104 62 2 111 213 50 152 3.24e-13 70.1
Msa0199980 MtrunA17_Chr2g0329361 36.190 105 64 2 111 213 61 164 2.62e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199980 AT4G38180.1 33.794 651 416 10 86 724 46 693 3.49e-119 377
Msa0199980 AT4G15090.1 29.213 623 428 6 111 727 51 666 5.67e-94 311
Msa0199980 AT4G15090.5 29.213 623 428 6 111 727 51 666 5.67e-94 311
Msa0199980 AT4G15090.3 29.213 623 428 6 111 727 51 666 5.67e-94 311
Msa0199980 AT4G15090.2 29.213 623 428 6 111 727 51 666 5.67e-94 311
Msa0199980 AT4G15090.4 29.213 623 428 6 111 727 51 666 5.67e-94 311
Msa0199980 AT1G76320.3 30.795 604 390 13 115 710 1 584 3.85e-89 294
Msa0199980 AT1G76320.1 30.795 604 390 13 115 710 1 584 8.59e-89 295
Msa0199980 AT1G76320.4 30.795 604 390 13 115 710 1 584 8.59e-89 295
Msa0199980 AT1G76320.2 30.795 604 390 13 115 710 1 584 1.04e-88 295
Msa0199980 AT3G22170.2 29.516 620 377 13 115 710 74 657 3.34e-86 290
Msa0199980 AT3G22170.1 29.516 620 377 13 115 710 74 657 3.34e-86 290
Msa0199980 AT2G27110.2 30.635 630 393 16 103 723 41 635 6.09e-84 285
Msa0199980 AT2G27110.1 30.635 630 393 16 103 723 41 635 6.09e-84 285
Msa0199980 AT3G06250.2 27.145 711 444 18 22 722 112 758 1.22e-79 271
Msa0199980 AT3G06250.1 27.145 711 444 18 22 722 112 758 1.22e-79 271
Msa0199980 AT3G06250.3 27.145 711 444 18 22 722 112 758 1.22e-79 271
Msa0199980 AT5G18960.2 27.857 700 436 19 31 722 144 782 6.22e-75 259
Msa0199980 AT5G18960.1 27.857 700 436 19 31 722 144 782 6.22e-75 259
Msa0199980 AT1G10240.2 28.682 645 424 15 105 727 42 672 2.85e-73 252
Msa0199980 AT1G10240.1 28.682 645 424 15 105 727 42 672 2.85e-73 252
Msa0199980 AT2G27110.3 33.634 443 279 9 289 723 55 490 9.97e-73 251
Msa0199980 AT2G32250.5 26.710 614 394 13 115 722 42 605 1.24e-68 241
Msa0199980 AT2G32250.8 26.710 614 394 13 115 722 1 564 2.43e-68 240
Msa0199980 AT2G32250.7 26.710 614 394 13 115 722 1 564 2.97e-68 240
Msa0199980 AT2G32250.2 26.710 614 394 13 115 722 42 605 3.38e-68 240
Msa0199980 AT2G32250.4 26.710 614 394 13 115 722 42 605 3.38e-68 240
Msa0199980 AT2G32250.6 26.710 614 394 13 115 722 42 605 3.96e-68 240
Msa0199980 AT2G32250.1 26.710 614 394 13 115 722 42 605 3.96e-68 240
Msa0199980 AT2G32250.3 26.710 614 394 13 115 722 42 605 3.96e-68 240
Msa0199980 AT4G19990.5 26.929 661 403 13 85 720 5 610 1.17e-60 218
Msa0199980 AT4G19990.7 26.706 674 409 14 72 720 11 624 1.23e-60 218
Msa0199980 AT4G19990.6 27.619 630 386 12 116 720 26 610 1.27e-60 219
Msa0199980 AT4G19990.2 27.619 630 386 12 116 720 26 610 1.27e-60 219
Msa0199980 AT4G19990.3 26.929 661 403 13 85 720 5 610 1.29e-60 218
Msa0199980 AT4G19990.4 26.929 661 403 13 85 720 5 610 1.29e-60 218
Msa0199980 AT4G38170.1 29.948 384 258 5 294 671 27 405 5.65e-60 212
Msa0199980 AT5G28530.1 25.914 602 404 15 111 685 55 641 1.83e-57 208
Msa0199980 AT5G28530.3 25.748 602 401 15 111 685 55 637 4.27e-56 204
Msa0199980 AT5G28530.2 25.748 602 401 15 111 685 55 637 4.27e-56 204
Msa0199980 AT1G80010.1 25.914 602 402 12 95 665 73 661 5.68e-56 204
Msa0199980 AT4G19990.1 27.349 596 363 12 150 720 3 553 5.90e-53 196
Msa0199980 AT1G52520.1 26.034 580 378 11 109 663 83 636 1.12e-52 195
Msa0199980 AT5G28530.4 24.746 590 365 18 110 685 54 578 7.99e-41 159
Msa0199980 AT5G28530.5 24.532 587 364 18 111 685 55 574 1.56e-39 155
Msa0199980 AT3G59470.3 35.762 151 85 3 78 218 27 175 4.42e-16 79.3
Msa0199980 AT3G59470.1 35.762 151 85 3 78 218 27 175 4.42e-16 79.3
Msa0199980 AT3G59470.2 35.762 151 85 3 78 218 39 187 5.37e-16 79.3
Msa0199980 AT4G12850.4 36.364 132 78 4 104 235 4 129 2.54e-15 73.9
Msa0199980 AT4G12850.2 38.739 111 64 3 104 214 4 110 6.96e-15 72.8
Msa0199980 AT4G12850.1 38.739 111 64 3 104 214 4 110 2.02e-14 72.8
Msa0199980 AT3G07500.1 40.000 105 62 1 111 215 33 136 8.90e-13 68.9
Msa0199980 AT2G43280.1 38.318 107 58 3 111 213 22 124 2.80e-12 67.0

Find 157 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAATAACAAATATATTT+TGG 0.083882 2_1:-19435944 Msa0199980:CDS
CGCTTAAGTATATAGGTTTC+AGG 0.211352 2_1:+19434925 None:intergenic
TTTGAAGTCTGATTTAAATT+TGG 0.211881 2_1:-19435325 Msa0199980:CDS
TTCAGATTGTGTCAATAAAT+TGG 0.215486 2_1:-19436630 Msa0199980:intron
CACCACATGCAAAACAAATA+AGG 0.219696 2_1:-19435865 Msa0199980:CDS
AGAGGTGGTTTCGATGATTA+TGG 0.230120 2_1:+19437263 None:intergenic
ATAAATGATTATGGGTATTT+TGG 0.231818 2_1:-19435906 Msa0199980:CDS
TTCATCATTTGCAATTGATA+TGG 0.235636 2_1:+19434648 None:intergenic
CACAATCCATGAAATGTTTC+TGG 0.237682 2_1:+19435639 None:intergenic
GCACAAATGATAAATGATTA+TGG 0.241903 2_1:-19435915 Msa0199980:CDS
CTTTAGTGACTGTTTCCTTT+TGG 0.269240 2_1:+19436055 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.287007 2_1:-19436473 Msa0199980:CDS
ATATATTCATGCAAATCTTT+TGG 0.296908 2_1:+19436146 None:intergenic
AAGTATGTGGATGGAGAATC+AGG 0.314708 2_1:-19434688 Msa0199980:CDS
TCTGCTCTAGGCTCCCCTTT+TGG 0.322934 2_1:+19436362 None:intergenic
TGTCCATCGCTTAAGTATAT+AGG 0.330247 2_1:+19434918 None:intergenic
CATTTCATGGATTGTGCACT+TGG 0.334162 2_1:-19435632 Msa0199980:CDS
AATGAGTATAGTAAAAGAAT+TGG 0.336174 2_1:-19436497 Msa0199980:CDS
ATGGTCGGAGACGGCGGCGG+CGG 0.340105 2_1:+19437126 None:intergenic
TGGAACTCCTCAAATATTCT+AGG 0.341058 2_1:+19435159 None:intergenic
CATTGTACCGCTTCATGAAA+TGG 0.342244 2_1:+19434830 None:intergenic
ATGAGTTTCTGAAGCTTTGT+TGG 0.343120 2_1:+19434780 None:intergenic
ATTGTCTTGGGAGATGAATC+TGG 0.347852 2_1:-19436176 Msa0199980:CDS
ACTTGTTGAGCATAATATAT+TGG 0.354013 2_1:-19435478 Msa0199980:CDS
GTTATGCCAGAAACATTTCA+TGG 0.360799 2_1:-19435645 Msa0199980:CDS
GGAAATAAAAGCAGAGTTGA+TGG 0.361988 2_1:-19436452 Msa0199980:CDS
CGACCGCTGGGAGTATTTGT+TGG 0.367452 2_1:-19435837 Msa0199980:CDS
GATATTCTTCATATTCCTCT+TGG 0.370740 2_1:+19435139 None:intergenic
AGAAATTAGAATGGGATGTT+TGG 0.393590 2_1:-19436342 Msa0199980:CDS
TATAGTAAAAGAATTGGATT+TGG 0.393932 2_1:-19436491 Msa0199980:CDS
TGCGTAAAAGATTTGAAAGA+AGG 0.394307 2_1:-19435108 Msa0199980:CDS
CTGTATTCCACCAGCTTGCT+TGG 0.394330 2_1:+19436121 None:intergenic
AAAGAGTTCACAATTCGGTT+TGG 0.397902 2_1:-19435565 Msa0199980:CDS
CACAAATGATAAATGATTAT+GGG 0.400438 2_1:-19435914 Msa0199980:CDS
TTACACTCCTAGAATATTTG+AGG 0.404149 2_1:-19435166 Msa0199980:CDS
TCAAATAACCACTTGAAAGA+AGG 0.406075 2_1:+19435753 None:intergenic
GCTGGACTCTTCATAAACTT+TGG 0.408472 2_1:+19434738 None:intergenic
AGGAAACAGTCACTAAAGTA+TGG 0.410122 2_1:-19436050 Msa0199980:CDS
TCGCCGCTGCACCTCTCTCT+TGG 0.420152 2_1:-19437203 Msa0199980:CDS
AGTGTCTTGATCCGTCAAAA+TGG 0.423186 2_1:+19435692 None:intergenic
AATTTAAATCAGACTTCAAA+TGG 0.428063 2_1:+19435328 None:intergenic
GAGGTGGTTTCGATGATTAT+GGG 0.433159 2_1:+19437264 None:intergenic
TGGTCGGAGACGGCGGCGGC+GGG 0.433188 2_1:+19437127 None:intergenic
ACCACATGCAAAACAAATAA+GGG 0.433258 2_1:-19435864 Msa0199980:CDS
ATATAAGACAGAATGCTTTA+CGG 0.434726 2_1:-19435608 Msa0199980:CDS
CGAATTACCTTGAAACCAAA+AGG 0.436415 2_1:-19436070 Msa0199980:CDS
GCATACAATTTATCAATTGA+AGG 0.436807 2_1:-19435442 Msa0199980:CDS
GTTCTATTATGACTTTCAAA+TGG 0.442664 2_1:-19435976 Msa0199980:CDS
ATTGTACCGCTTCATGAAAT+GGG 0.445421 2_1:+19434831 None:intergenic
AACAACAATGGCAGCGGCGC+AGG 0.452252 2_1:+19437102 None:intergenic
AATGGGATGTTTGGCGCGTA+TGG 0.453226 2_1:-19436333 Msa0199980:CDS
TATCAAAAGAGTTCACAATT+CGG 0.453232 2_1:-19435570 Msa0199980:CDS
GACAAAAGACGTCAACCAAA+AGG 0.461065 2_1:-19436377 Msa0199980:CDS
TGAAACATTTCTCAAGGCAA+TGG 0.465247 2_1:-19435733 Msa0199980:CDS
GAAACATTTCTCAAGGCAAT+GGG 0.465404 2_1:-19435732 Msa0199980:CDS
TAGTGTTGGTAGCAGGATGA+TGG 0.465525 2_1:+19437155 None:intergenic
CCAACGGAGAGGATAGTTAT+GGG 0.468436 2_1:-19435057 Msa0199980:CDS
GGTTCGTTAGTGTTGGTAGC+AGG 0.468658 2_1:+19437148 None:intergenic
CAAATAACCACTTGAAAGAA+GGG 0.471210 2_1:+19435754 None:intergenic
CCCATAACTATCCTCTCCGT+TGG 0.473881 2_1:+19435057 None:intergenic
TCCAACGGAGAGGATAGTTA+TGG 0.475548 2_1:-19435058 Msa0199980:CDS
GCTGCCATTGTTGTTGATCA+AGG 0.480338 2_1:-19437094 Msa0199980:intron
GGTGGAAAGTTGTCTGAGAA+AGG 0.481095 2_1:+19437294 None:intergenic
GGTTGGGAAGTGATCAAGAT+TGG 0.482271 2_1:-19434885 Msa0199980:CDS
CAAAATAATTGATGATATGT+TGG 0.486221 2_1:-19434716 Msa0199980:CDS
TTGGTTAACTTAACCATTCG+AGG 0.487402 2_1:+19434799 None:intergenic
CCCATTCTAATTTCTGCTCT+AGG 0.487681 2_1:+19436350 None:intergenic
AGTGTTGGTAGCAGGATGAT+GGG 0.490017 2_1:+19437156 None:intergenic
GCTGGTGGAATACAGATAGT+TGG 0.495710 2_1:-19436113 Msa0199980:CDS
ACAAAAGACGTCAACCAAAA+GGG 0.496414 2_1:-19436376 Msa0199980:CDS
GATAGTTATGGGAAATGCTA+TGG 0.498511 2_1:-19435046 Msa0199980:CDS
TGCCAACAATGTACCTCACT+TGG 0.498928 2_1:-19436561 Msa0199980:CDS
TTCCAAGTGAGGTACATTGT+TGG 0.502644 2_1:+19436559 None:intergenic
AGGTGCAGCGGCGAGAGAGA+AGG 0.503028 2_1:+19437212 None:intergenic
AAATAAGGGTTATCGACCGC+TGG 0.503228 2_1:-19435850 Msa0199980:CDS
ACAAGCATCACAAATTGTCT+TGG 0.503759 2_1:-19436189 Msa0199980:CDS
TGGTTTCAAGGTAATTCGTA+AGG 0.504744 2_1:+19436075 None:intergenic
AGAGGTGACGGCGGAGCCGA+TGG 0.506282 2_1:+19437235 None:intergenic
CGAATCATATGAACATGCTC+AGG 0.508001 2_1:+19436236 None:intergenic
GGCAGCGGCGCAGGGATGGT+CGG 0.512257 2_1:+19437111 None:intergenic
TGGACAAGAAATGCAAGGTT+GGG 0.513978 2_1:-19434901 Msa0199980:CDS
AAGTTGTCTGAGAAAGGAAG+AGG 0.516512 2_1:+19437300 None:intergenic
ATGGACAAGAAATGCAAGGT+TGG 0.517510 2_1:-19434902 Msa0199980:CDS
GGGATGGTCGGAGACGGCGG+CGG 0.517961 2_1:+19437123 None:intergenic
CAAGCATCACAAATTGTCTT+GGG 0.518135 2_1:-19436188 Msa0199980:CDS
CGAGAGAGAAGGAGAGGTGA+CGG 0.518457 2_1:+19437223 None:intergenic
GTTATTTGAAACATTTCTCA+AGG 0.522402 2_1:-19435739 Msa0199980:CDS
AGGTGGTTTCGATGATTATG+GGG 0.524762 2_1:+19437265 None:intergenic
GGAAATGAAGTTTGATTCTG+AGG 0.525153 2_1:-19436540 Msa0199980:CDS
GTTGAGCATAATATATTGGA+AGG 0.525933 2_1:-19435474 Msa0199980:CDS
CAATGGCAGCGGCGCAGGGA+TGG 0.526019 2_1:+19437107 None:intergenic
GCCTAGAGCAGAAATTAGAA+TGG 0.527171 2_1:-19436351 Msa0199980:CDS
GGCGCAGGGATGGTCGGAGA+CGG 0.533543 2_1:+19437117 None:intergenic
AATGGGCATGGACATATGTC+CGG 0.534093 2_1:-19435416 Msa0199980:CDS
AAACAATCCCTTCTTTCAAG+TGG 0.538998 2_1:-19435761 Msa0199980:CDS
GGCGGCGGGTTCGTTAGTGT+TGG 0.541693 2_1:+19437141 None:intergenic
GAAGTTTGATTCTGAGGCAG+CGG 0.545649 2_1:-19436534 Msa0199980:CDS
GCCTAGATTGAAAATGAAGA+AGG 0.546195 2_1:-19435217 Msa0199980:CDS
GGGTTCGCTCATGACGTTGA+CGG 0.546901 2_1:+19437177 None:intergenic
TCAAGACACTGCGATGGCTA+AGG 0.547319 2_1:-19435679 Msa0199980:CDS
GAGCCGATGGGAAGGAGAGG+TGG 0.550560 2_1:+19437248 None:intergenic
GTCACTAAAGTATGGTGAGG+TGG 0.552933 2_1:-19436042 Msa0199980:CDS
GAAGTGATCAAGATTGGAAA+GGG 0.552959 2_1:-19434879 Msa0199980:CDS
TGACGGCGGAGCCGATGGGA+AGG 0.554360 2_1:+19437240 None:intergenic
GTCCGGAAAACATTCACTGC+AGG 0.554763 2_1:-19435399 Msa0199980:CDS
GCAGGGATGGTCGGAGACGG+CGG 0.559162 2_1:+19437120 None:intergenic
TCACTAAAGTATGGTGAGGT+GGG 0.560370 2_1:-19436041 Msa0199980:CDS
GAGGTGACGGCGGAGCCGAT+GGG 0.566590 2_1:+19437236 None:intergenic
TTGTTGGACTAAATAATCAC+AGG 0.567844 2_1:-19435821 Msa0199980:CDS
CCTAGAGCAGAAATTAGAAT+GGG 0.568736 2_1:-19436350 Msa0199980:CDS
ACAACAATGGCAGCGGCGCA+GGG 0.575609 2_1:+19437103 None:intergenic
CAAAATGTGCAACACGGACA+AGG 0.581561 2_1:-19436590 Msa0199980:CDS
GTGTTGGTAGCAGGATGATG+GGG 0.582430 2_1:+19437157 None:intergenic
GGAAGTGATCAAGATTGGAA+AGG 0.584639 2_1:-19434880 Msa0199980:CDS
GCGGAGCCGATGGGAAGGAG+AGG 0.584685 2_1:+19437245 None:intergenic
GTATGGTTATTTCACTCGAT+CGG 0.586251 2_1:-19436316 Msa0199980:CDS
TATATATCCAAGCAAGCTGG+TGG 0.588298 2_1:-19436128 Msa0199980:CDS
ATAATATATTGGAAGGGTCG+TGG 0.588775 2_1:-19435467 Msa0199980:CDS
CAATGAGTTATGTCCTCGAA+TGG 0.589590 2_1:-19434812 Msa0199980:CDS
GAATATATATCCAAGCAAGC+TGG 0.590655 2_1:-19436131 Msa0199980:CDS
AAACCTATATACTTAAGCGA+TGG 0.590891 2_1:-19434921 Msa0199980:CDS
GGTGGTTTCGATGATTATGG+GGG 0.590920 2_1:+19437266 None:intergenic
CAGCGGCGAGAGAGAAGGAG+AGG 0.595013 2_1:+19437217 None:intergenic
AGACCAAGAGAGAGGTGCAG+CGG 0.596476 2_1:+19437200 None:intergenic
GAGAGAAGGAGAGGTGACGG+CGG 0.598157 2_1:+19437226 None:intergenic
GATAGATGTACACGAAGATG+AGG 0.599215 2_1:-19435529 Msa0199980:CDS
CATGCTCAGGTTGAAGTTGG+TGG 0.600927 2_1:+19436249 None:intergenic
AATAAGGGTTATCGACCGCT+GGG 0.601235 2_1:-19435849 Msa0199980:CDS
TCAAACTTCATTTCCAAGTG+AGG 0.602359 2_1:+19436548 None:intergenic
CAAAAGACGTCAACCAAAAG+GGG 0.607006 2_1:-19436375 Msa0199980:CDS
GAACATGCTCAGGTTGAAGT+TGG 0.607804 2_1:+19436246 None:intergenic
TAAAAGCCCATTTCATGAAG+CGG 0.608976 2_1:-19434837 Msa0199980:CDS
TGTCGTAAATTTGAGACACA+TGG 0.610330 2_1:-19435003 Msa0199980:CDS
AAGATTCACATGCTACAAAG+AGG 0.619398 2_1:-19436414 Msa0199980:CDS
TTGAGCATAATATATTGGAA+GGG 0.622690 2_1:-19435473 Msa0199980:CDS
TTGATCAACAACAATGGCAG+CGG 0.627743 2_1:+19437096 None:intergenic
GTGATCAAGATTGGAAAGGG+AGG 0.630069 2_1:-19434876 Msa0199980:CDS
AGTATGTGGATGGAGAATCA+GGG 0.630721 2_1:-19434687 Msa0199980:CDS
GACGGATCAAGACACTGCGA+TGG 0.636401 2_1:-19435685 Msa0199980:CDS
TGCTACAAAGAGGGTGTACG+AGG 0.638548 2_1:-19436404 Msa0199980:CDS
AGCGATGGACAAGAAATGCA+AGG 0.640628 2_1:-19434906 Msa0199980:CDS
ACATTTCTCAAGGCAATGGG+TGG 0.644607 2_1:-19435729 Msa0199980:CDS
GTATGTGGATGGAGAATCAG+GGG 0.652149 2_1:-19434686 Msa0199980:CDS
TGAAAGTCATAATAGAACGA+GGG 0.653626 2_1:+19435981 None:intergenic
AGATTCACATGCTACAAAGA+GGG 0.654496 2_1:-19436413 Msa0199980:CDS
ATAGATGTACACGAAGATGA+GGG 0.654743 2_1:-19435528 Msa0199980:CDS
CACAAACTATGATAATCCAA+CGG 0.657053 2_1:-19435073 Msa0199980:CDS
CATGAACAAAATGTGCAACA+CGG 0.658217 2_1:-19436596 Msa0199980:CDS
ATTACCTTGATCAACAACAA+TGG 0.673823 2_1:+19437090 None:intergenic
AAACCACCTCTCCTTCCCAT+CGG 0.675923 2_1:-19437251 Msa0199980:CDS
ACAGTCACTAAAGTATGGTG+AGG 0.682809 2_1:-19436045 Msa0199980:CDS
AATATTTGAGGAGTTCCAAG+AGG 0.693235 2_1:-19435154 Msa0199980:CDS
TTGAAAGTCATAATAGAACG+AGG 0.700448 2_1:+19435980 None:intergenic
GTTGACGGAGACCAAGAGAG+AGG 0.702689 2_1:+19437192 None:intergenic
ACTATGATAATCCAACGGAG+AGG 0.733483 2_1:-19435068 Msa0199980:CDS
AGTCCAACAAATACTCCCAG+CGG 0.747809 2_1:+19435834 None:intergenic
TATGTGGATGGAGAATCAGG+GGG 0.769238 2_1:-19434685 Msa0199980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACTATTAAAAAAACATT+GGG + chr2_1:19435080-19435099 None:intergenic 10.0%
!! TATTACTATTAAAAAAACAT+TGG + chr2_1:19435081-19435100 None:intergenic 10.0%
!!! TATACATATATATAGCTTTA+TGG - chr2_1:19435015-19435034 Msa0199980:CDS 15.0%
!! TTACTATTAAAAAAACATTG+GGG + chr2_1:19435079-19435098 None:intergenic 15.0%
!! AAAACCAAAATTTACAATTA+AGG + chr2_1:19435317-19435336 None:intergenic 15.0%
!!! AGCAAATAACAAATATATTT+TGG - chr2_1:19436023-19436042 Msa0199980:CDS 15.0%
!!! GCAAATAACAAATATATTTT+GGG - chr2_1:19436024-19436043 Msa0199980:CDS 15.0%
!!! TTGATGAAAAATTAGTTTCT+AGG - chr2_1:19434963-19434982 Msa0199980:CDS 20.0%
!! TACTATTAAAAAAACATTGG+GGG + chr2_1:19435078-19435097 None:intergenic 20.0%
!!! AATAGTAATAGATAGCTTTA+TGG - chr2_1:19435091-19435110 Msa0199980:CDS 20.0%
!! AATGAGTATAGTAAAAGAAT+TGG - chr2_1:19435470-19435489 Msa0199980:CDS 20.0%
!! TATAGTAAAAGAATTGGATT+TGG - chr2_1:19435476-19435495 Msa0199980:CDS 20.0%
!!! ATATATTCATGCAAATCTTT+TGG + chr2_1:19435824-19435843 None:intergenic 20.0%
!!! AATAACAAATATATTTTGGG+CGG - chr2_1:19436027-19436046 Msa0199980:CDS 20.0%
!! CACAAATGATAAATGATTAT+GGG - chr2_1:19436053-19436072 Msa0199980:CDS 20.0%
!!! ATAAATGATTATGGGTATTT+TGG - chr2_1:19436061-19436080 Msa0199980:CDS 20.0%
!! TTTATCAATTGAAGGAAAAA+TGG - chr2_1:19436533-19436552 Msa0199980:CDS 20.0%
!! TTATCAATTGAAGGAAAAAT+GGG - chr2_1:19436534-19436553 Msa0199980:CDS 20.0%
!! AATTTAAATCAGACTTCAAA+TGG + chr2_1:19436642-19436661 None:intergenic 20.0%
!!! TTTGAAGTCTGATTTAAATT+TGG - chr2_1:19436642-19436661 Msa0199980:intron 20.0%
!!! CAAAATAATTGATGATATGT+TGG - chr2_1:19437251-19437270 Msa0199980:CDS 20.0%
! GGCAAATAATAAAATAGAGA+AGG + chr2_1:19434911-19434930 None:intergenic 25.0%
! AACATCATGTAATAAAGAGA+CGG + chr2_1:19434932-19434951 None:intergenic 25.0%
! TTCAGATTGTGTCAATAAAT+TGG - chr2_1:19435337-19435356 Msa0199980:CDS 25.0%
! GTTCTATTATGACTTTCAAA+TGG - chr2_1:19435991-19436010 Msa0199980:CDS 25.0%
! GCACAAATGATAAATGATTA+TGG - chr2_1:19436052-19436071 Msa0199980:CDS 25.0%
!! GTTATTTGAAACATTTCTCA+AGG - chr2_1:19436228-19436247 Msa0199980:CDS 25.0%
! ATATAAGACAGAATGCTTTA+CGG - chr2_1:19436359-19436378 Msa0199980:CDS 25.0%
! TATCAAAAGAGTTCACAATT+CGG - chr2_1:19436397-19436416 Msa0199980:CDS 25.0%
!! ACTTGTTGAGCATAATATAT+TGG - chr2_1:19436489-19436508 Msa0199980:CDS 25.0%
! TTGAGCATAATATATTGGAA+GGG - chr2_1:19436494-19436513 Msa0199980:CDS 25.0%
! GCATACAATTTATCAATTGA+AGG - chr2_1:19436525-19436544 Msa0199980:CDS 25.0%
!!! CATATCATCAATTATTTTGC+TGG + chr2_1:19437250-19437269 None:intergenic 25.0%
! TTCATCATTTGCAATTGATA+TGG + chr2_1:19437322-19437341 None:intergenic 25.0%
ATTACCTTGATCAACAACAA+TGG + chr2_1:19434880-19434899 None:intergenic 30.0%
TTAAAAAAACATTGGGGGAA+AGG + chr2_1:19435073-19435092 None:intergenic 30.0%
! ATGTCTGAAATCATCACTTA+TGG - chr2_1:19435288-19435307 Msa0199980:CDS 30.0%
!! GTGGCCTTAATTGTAAATTT+TGG - chr2_1:19435310-19435329 Msa0199980:CDS 30.0%
AGAAATTAGAATGGGATGTT+TGG - chr2_1:19435625-19435644 Msa0199980:CDS 30.0%
TGAAAGTCATAATAGAACGA+GGG + chr2_1:19435989-19436008 None:intergenic 30.0%
TTGAAAGTCATAATAGAACG+AGG + chr2_1:19435990-19436009 None:intergenic 30.0%
ACCACATGCAAAACAAATAA+GGG - chr2_1:19436103-19436122 Msa0199980:CDS 30.0%
TTGTTGGACTAAATAATCAC+AGG - chr2_1:19436146-19436165 Msa0199980:CDS 30.0%
CAAATAACCACTTGAAAGAA+GGG + chr2_1:19436216-19436235 None:intergenic 30.0%
TCAAATAACCACTTGAAAGA+AGG + chr2_1:19436217-19436236 None:intergenic 30.0%
! AAAGCCAAAAACCATTTTGA+CGG - chr2_1:19436264-19436283 Msa0199980:CDS 30.0%
! GTGAACTCTTTTGATATAAG+TGG + chr2_1:19436393-19436412 None:intergenic 30.0%
GTTGAGCATAATATATTGGA+AGG - chr2_1:19436493-19436512 Msa0199980:CDS 30.0%
TTACACTCCTAGAATATTTG+AGG - chr2_1:19436801-19436820 Msa0199980:intron 30.0%
GATATTCTTCATATTCCTCT+TGG + chr2_1:19436831-19436850 None:intergenic 30.0%
TGCGTAAAAGATTTGAAAGA+AGG - chr2_1:19436859-19436878 Msa0199980:intron 30.0%
CACAAACTATGATAATCCAA+CGG - chr2_1:19436894-19436913 Msa0199980:intron 30.0%
AAACCTATATACTTAAGCGA+TGG - chr2_1:19437046-19437065 Msa0199980:intron 30.0%
! TGCAGTCTAAGTTTTTCTAG+TGG - chr2_1:19435128-19435147 Msa0199980:CDS 35.0%
!! AAAACAACATTCTGAAGTCG+CGG + chr2_1:19435236-19435255 None:intergenic 35.0%
! TCTGAAATCATCACTTATGG+TGG - chr2_1:19435291-19435310 Msa0199980:CDS 35.0%
CATGAACAAAATGTGCAACA+CGG - chr2_1:19435371-19435390 Msa0199980:CDS 35.0%
TCAAACTTCATTTCCAAGTG+AGG + chr2_1:19435422-19435441 None:intergenic 35.0%
GGAAATGAAGTTTGATTCTG+AGG - chr2_1:19435427-19435446 Msa0199980:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG - chr2_1:19435494-19435513 Msa0199980:CDS 35.0%
GGAAATAAAAGCAGAGTTGA+TGG - chr2_1:19435515-19435534 Msa0199980:CDS 35.0%
AAGATTCACATGCTACAAAG+AGG - chr2_1:19435553-19435572 Msa0199980:CDS 35.0%
AGATTCACATGCTACAAAGA+GGG - chr2_1:19435554-19435573 Msa0199980:CDS 35.0%
ACAAAAGACGTCAACCAAAA+GGG - chr2_1:19435591-19435610 Msa0199980:CDS 35.0%
CCTAGAGCAGAAATTAGAAT+GGG - chr2_1:19435617-19435636 Msa0199980:CDS 35.0%
! GTATGGTTATTTCACTCGAT+CGG - chr2_1:19435651-19435670 Msa0199980:CDS 35.0%
ACAAGCATCACAAATTGTCT+TGG - chr2_1:19435778-19435797 Msa0199980:CDS 35.0%
CAAGCATCACAAATTGTCTT+GGG - chr2_1:19435779-19435798 Msa0199980:CDS 35.0%
GAATATATATCCAAGCAAGC+TGG - chr2_1:19435836-19435855 Msa0199980:CDS 35.0%
TGGTTTCAAGGTAATTCGTA+AGG + chr2_1:19435895-19435914 None:intergenic 35.0%
CGAATTACCTTGAAACCAAA+AGG - chr2_1:19435897-19435916 Msa0199980:CDS 35.0%
!!! ACTGTTTCCTTTTGGTTTCA+AGG + chr2_1:19435907-19435926 None:intergenic 35.0%
! CTTTAGTGACTGTTTCCTTT+TGG + chr2_1:19435915-19435934 None:intergenic 35.0%
AGGAAACAGTCACTAAAGTA+TGG - chr2_1:19435917-19435936 Msa0199980:CDS 35.0%
CACCACATGCAAAACAAATA+AGG - chr2_1:19436102-19436121 Msa0199980:CDS 35.0%
!!! ACCCTTATTTGTTTTGCATG+TGG + chr2_1:19436107-19436126 None:intergenic 35.0%
AAACAATCCCTTCTTTCAAG+TGG - chr2_1:19436206-19436225 Msa0199980:CDS 35.0%
TGAAACATTTCTCAAGGCAA+TGG - chr2_1:19436234-19436253 Msa0199980:CDS 35.0%
GAAACATTTCTCAAGGCAAT+GGG - chr2_1:19436235-19436254 Msa0199980:CDS 35.0%
! TGATCCGTCAAAATGGTTTT+TGG + chr2_1:19436271-19436290 None:intergenic 35.0%
GTTATGCCAGAAACATTTCA+TGG - chr2_1:19436322-19436341 Msa0199980:CDS 35.0%
CACAATCCATGAAATGTTTC+TGG + chr2_1:19436331-19436350 None:intergenic 35.0%
AAAGAGTTCACAATTCGGTT+TGG - chr2_1:19436402-19436421 Msa0199980:CDS 35.0%
ATAGATGTACACGAAGATGA+GGG - chr2_1:19436439-19436458 Msa0199980:CDS 35.0%
! AGGGTGAATTTTTGAATGCT+TGG - chr2_1:19436458-19436477 Msa0199980:CDS 35.0%
ATAATATATTGGAAGGGTCG+TGG - chr2_1:19436500-19436519 Msa0199980:CDS 35.0%
AATTGAAGGAAAAATGGGCA+TGG - chr2_1:19436539-19436558 Msa0199980:CDS 35.0%
GCCTAGATTGAAAATGAAGA+AGG - chr2_1:19436750-19436769 Msa0199980:intron 35.0%
! GCCTTCTTCATTTTCAATCT+AGG + chr2_1:19436754-19436773 None:intergenic 35.0%
TGGAACTCCTCAAATATTCT+AGG + chr2_1:19436811-19436830 None:intergenic 35.0%
AATATTTGAGGAGTTCCAAG+AGG - chr2_1:19436813-19436832 Msa0199980:intron 35.0%
GATAGTTATGGGAAATGCTA+TGG - chr2_1:19436921-19436940 Msa0199980:intron 35.0%
! TGTCGTAAATTTGAGACACA+TGG - chr2_1:19436964-19436983 Msa0199980:intron 35.0%
CGCTTAAGTATATAGGTTTC+AGG + chr2_1:19437045-19437064 None:intergenic 35.0%
TGTCCATCGCTTAAGTATAT+AGG + chr2_1:19437052-19437071 None:intergenic 35.0%
GAAGTGATCAAGATTGGAAA+GGG - chr2_1:19437088-19437107 Msa0199980:intron 35.0%
TAAAAGCCCATTTCATGAAG+CGG - chr2_1:19437130-19437149 Msa0199980:CDS 35.0%
ATTGTACCGCTTCATGAAAT+GGG + chr2_1:19437139-19437158 None:intergenic 35.0%
TTGGTTAACTTAACCATTCG+AGG + chr2_1:19437171-19437190 None:intergenic 35.0%
!! ATGAGTTTCTGAAGCTTTGT+TGG + chr2_1:19437190-19437209 None:intergenic 35.0%
! TATGTTGGCCAAAAAGTATG+TGG - chr2_1:19437266-19437285 Msa0199980:CDS 35.0%
! TTCTCCATCCACATACTTTT+TGG + chr2_1:19437277-19437296 None:intergenic 35.0%
AAGTTGTCTGAGAAAGGAAG+AGG + chr2_1:19434670-19434689 None:intergenic 40.0%
AGGTGGTTTCGATGATTATG+GGG + chr2_1:19434705-19434724 None:intergenic 40.0%
GAGGTGGTTTCGATGATTAT+GGG + chr2_1:19434706-19434725 None:intergenic 40.0%
AGAGGTGGTTTCGATGATTA+TGG + chr2_1:19434707-19434726 None:intergenic 40.0%
TTGATCAACAACAATGGCAG+CGG + chr2_1:19434874-19434893 None:intergenic 40.0%
AAAAACATTGGGGGAAAGGA+TGG + chr2_1:19435069-19435088 None:intergenic 40.0%
TTCCAAGTGAGGTACATTGT+TGG + chr2_1:19435411-19435430 None:intergenic 40.0%
GACAAAAGACGTCAACCAAA+AGG - chr2_1:19435590-19435609 Msa0199980:CDS 40.0%
CAAAAGACGTCAACCAAAAG+GGG - chr2_1:19435592-19435611 Msa0199980:CDS 40.0%
GCCTAGAGCAGAAATTAGAA+TGG - chr2_1:19435616-19435635 Msa0199980:CDS 40.0%
CCCATTCTAATTTCTGCTCT+AGG + chr2_1:19435620-19435639 None:intergenic 40.0%
CGAATCATATGAACATGCTC+AGG + chr2_1:19435734-19435753 None:intergenic 40.0%
ATTGTCTTGGGAGATGAATC+TGG - chr2_1:19435791-19435810 Msa0199980:CDS 40.0%
TATATATCCAAGCAAGCTGG+TGG - chr2_1:19435839-19435858 Msa0199980:CDS 40.0%
ACAGTCACTAAAGTATGGTG+AGG - chr2_1:19435922-19435941 Msa0199980:CDS 40.0%
TCACTAAAGTATGGTGAGGT+GGG - chr2_1:19435926-19435945 Msa0199980:CDS 40.0%
!! CACAGGCAAACAGTCATTTT+TGG - chr2_1:19436163-19436182 Msa0199980:CDS 40.0%
AGTGTCTTGATCCGTCAAAA+TGG + chr2_1:19436278-19436297 None:intergenic 40.0%
! CATTTCATGGATTGTGCACT+TGG - chr2_1:19436335-19436354 Msa0199980:CDS 40.0%
GATAGATGTACACGAAGATG+AGG - chr2_1:19436438-19436457 Msa0199980:CDS 40.0%
! TACCTGCAGTGAATGTTTTC+CGG + chr2_1:19436573-19436592 None:intergenic 40.0%
ACTATGATAATCCAACGGAG+AGG - chr2_1:19436899-19436918 Msa0199980:intron 40.0%
ATGGACAAGAAATGCAAGGT+TGG - chr2_1:19437065-19437084 Msa0199980:intron 40.0%
TGGACAAGAAATGCAAGGTT+GGG - chr2_1:19437066-19437085 Msa0199980:intron 40.0%
GGAAGTGATCAAGATTGGAA+AGG - chr2_1:19437087-19437106 Msa0199980:intron 40.0%
CATTGTACCGCTTCATGAAA+TGG + chr2_1:19437140-19437159 None:intergenic 40.0%
CAATGAGTTATGTCCTCGAA+TGG - chr2_1:19437155-19437174 Msa0199980:CDS 40.0%
GCTGGACTCTTCATAAACTT+TGG + chr2_1:19437232-19437251 None:intergenic 40.0%
! TTGGCCAAAAAGTATGTGGA+TGG - chr2_1:19437270-19437289 Msa0199980:CDS 40.0%
AAGTATGTGGATGGAGAATC+AGG - chr2_1:19437279-19437298 Msa0199980:CDS 40.0%
AGTATGTGGATGGAGAATCA+GGG - chr2_1:19437280-19437299 Msa0199980:CDS 40.0%
GGTGGAAAGTTGTCTGAGAA+AGG + chr2_1:19434676-19434695 None:intergenic 45.0%
GGTGGTTTCGATGATTATGG+GGG + chr2_1:19434704-19434723 None:intergenic 45.0%
!! AGTGTTGGTAGCAGGATGAT+GGG + chr2_1:19434814-19434833 None:intergenic 45.0%
!! TAGTGTTGGTAGCAGGATGA+TGG + chr2_1:19434815-19434834 None:intergenic 45.0%
! GCTGCCATTGTTGTTGATCA+AGG - chr2_1:19434873-19434892 Msa0199980:CDS 45.0%
CAAAATGTGCAACACGGACA+AGG - chr2_1:19435377-19435396 Msa0199980:CDS 45.0%
TGCCAACAATGTACCTCACT+TGG - chr2_1:19435406-19435425 Msa0199980:CDS 45.0%
!! GAAGTTTGATTCTGAGGCAG+CGG - chr2_1:19435433-19435452 Msa0199980:CDS 45.0%
!! GAACATGCTCAGGTTGAAGT+TGG + chr2_1:19435724-19435743 None:intergenic 45.0%
GCTGGTGGAATACAGATAGT+TGG - chr2_1:19435854-19435873 Msa0199980:CDS 45.0%
GTCACTAAAGTATGGTGAGG+TGG - chr2_1:19435925-19435944 Msa0199980:CDS 45.0%
AAATAAGGGTTATCGACCGC+TGG - chr2_1:19436117-19436136 Msa0199980:CDS 45.0%
AATAAGGGTTATCGACCGCT+GGG - chr2_1:19436118-19436137 Msa0199980:CDS 45.0%
AGTCCAACAAATACTCCCAG+CGG + chr2_1:19436136-19436155 None:intergenic 45.0%
ACATTTCTCAAGGCAATGGG+TGG - chr2_1:19436238-19436257 Msa0199980:CDS 45.0%
AATGGGCATGGACATATGTC+CGG - chr2_1:19436551-19436570 Msa0199980:CDS 45.0%
TCCAACGGAGAGGATAGTTA+TGG - chr2_1:19436909-19436928 Msa0199980:intron 45.0%
CCAACGGAGAGGATAGTTAT+GGG - chr2_1:19436910-19436929 Msa0199980:intron 45.0%
AGCGATGGACAAGAAATGCA+AGG - chr2_1:19437061-19437080 Msa0199980:intron 45.0%
GGTTGGGAAGTGATCAAGAT+TGG - chr2_1:19437082-19437101 Msa0199980:intron 45.0%
GTGATCAAGATTGGAAAGGG+AGG - chr2_1:19437091-19437110 Msa0199980:intron 45.0%
GTATGTGGATGGAGAATCAG+GGG - chr2_1:19437281-19437300 Msa0199980:CDS 45.0%
TATGTGGATGGAGAATCAGG+GGG - chr2_1:19437282-19437301 Msa0199980:CDS 45.0%
ATGATTATGGGGGAGGAAGG+TGG + chr2_1:19434694-19434713 None:intergenic 50.0%
TCGATGATTATGGGGGAGGA+AGG + chr2_1:19434697-19434716 None:intergenic 50.0%
GGTTTCGATGATTATGGGGG+AGG + chr2_1:19434701-19434720 None:intergenic 50.0%
AAACCACCTCTCCTTCCCAT+CGG - chr2_1:19434716-19434735 Msa0199980:CDS 50.0%
!! GTGTTGGTAGCAGGATGATG+GGG + chr2_1:19434813-19434832 None:intergenic 50.0%
!! GGTTCGTTAGTGTTGGTAGC+AGG + chr2_1:19434822-19434841 None:intergenic 50.0%
! TGCTACAAAGAGGGTGTACG+AGG - chr2_1:19435563-19435582 Msa0199980:CDS 50.0%
AATGGGATGTTTGGCGCGTA+TGG - chr2_1:19435634-19435653 Msa0199980:CDS 50.0%
!! CATGCTCAGGTTGAAGTTGG+TGG + chr2_1:19435721-19435740 None:intergenic 50.0%
! CTGTATTCCACCAGCTTGCT+TGG + chr2_1:19435849-19435868 None:intergenic 50.0%
TCAAGACACTGCGATGGCTA+AGG - chr2_1:19436288-19436307 Msa0199980:CDS 50.0%
GTCCGGAAAACATTCACTGC+AGG - chr2_1:19436568-19436587 Msa0199980:CDS 50.0%
CCCATAACTATCCTCTCCGT+TGG + chr2_1:19436913-19436932 None:intergenic 50.0%
CGAGAGAGAAGGAGAGGTGA+CGG + chr2_1:19434747-19434766 None:intergenic 55.0%
! AGACCAAGAGAGAGGTGCAG+CGG + chr2_1:19434770-19434789 None:intergenic 55.0%
GTTGACGGAGACCAAGAGAG+AGG + chr2_1:19434778-19434797 None:intergenic 55.0%
GGGTTCGCTCATGACGTTGA+CGG + chr2_1:19434793-19434812 None:intergenic 55.0%
!! TCTGCTCTAGGCTCCCCTTT+TGG + chr2_1:19435608-19435627 None:intergenic 55.0%
!! CGACCGCTGGGAGTATTTGT+TGG - chr2_1:19436130-19436149 Msa0199980:CDS 55.0%
GACGGATCAAGACACTGCGA+TGG - chr2_1:19436282-19436301 Msa0199980:CDS 55.0%
! GAGAGAAGGAGAGGTGACGG+CGG + chr2_1:19434744-19434763 None:intergenic 60.0%
ACAACAATGGCAGCGGCGCA+GGG + chr2_1:19434867-19434886 None:intergenic 60.0%
AACAACAATGGCAGCGGCGC+AGG + chr2_1:19434868-19434887 None:intergenic 60.0%
GGATGGAGAATCAGGGGGCA+TGG - chr2_1:19437287-19437306 Msa0199980:CDS 60.0%
GAGCCGATGGGAAGGAGAGG+TGG + chr2_1:19434722-19434741 None:intergenic 65.0%
CAGCGGCGAGAGAGAAGGAG+AGG + chr2_1:19434753-19434772 None:intergenic 65.0%
AGGTGCAGCGGCGAGAGAGA+AGG + chr2_1:19434758-19434777 None:intergenic 65.0%
TCGCCGCTGCACCTCTCTCT+TGG - chr2_1:19434764-19434783 Msa0199980:CDS 65.0%
! GGCGGCGGGTTCGTTAGTGT+TGG + chr2_1:19434829-19434848 None:intergenic 65.0%
GCGGAGCCGATGGGAAGGAG+AGG + chr2_1:19434725-19434744 None:intergenic 70.0%
TGACGGCGGAGCCGATGGGA+AGG + chr2_1:19434730-19434749 None:intergenic 70.0%
! GAGGTGACGGCGGAGCCGAT+GGG + chr2_1:19434734-19434753 None:intergenic 70.0%
! AGAGGTGACGGCGGAGCCGA+TGG + chr2_1:19434735-19434754 None:intergenic 70.0%
GCAGGGATGGTCGGAGACGG+CGG + chr2_1:19434850-19434869 None:intergenic 70.0%
GGCGCAGGGATGGTCGGAGA+CGG + chr2_1:19434853-19434872 None:intergenic 70.0%
CAATGGCAGCGGCGCAGGGA+TGG + chr2_1:19434863-19434882 None:intergenic 70.0%
ATGGTCGGAGACGGCGGCGG+CGG + chr2_1:19434844-19434863 None:intergenic 75.0%
GGGATGGTCGGAGACGGCGG+CGG + chr2_1:19434847-19434866 None:intergenic 75.0%
GGCAGCGGCGCAGGGATGGT+CGG + chr2_1:19434859-19434878 None:intergenic 75.0%
! TGGTCGGAGACGGCGGCGGC+GGG + chr2_1:19434843-19434862 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19434642 19437347 19434642 ID=Msa0199980;Name=Msa0199980
chr2_1 mRNA 19434642 19437347 19434642 ID=Msa0199980-mRNA-1;Parent=Msa0199980;Name=Msa0199980-mRNA-1;_AED=0.21;_eAED=0.25;_QI=0|0|0|1|1|1|2|0|752
chr2_1 exon 19437095 19437347 19437095 ID=Msa0199980-mRNA-1:exon:8138;Parent=Msa0199980-mRNA-1
chr2_1 exon 19434642 19436647 19434642 ID=Msa0199980-mRNA-1:exon:8137;Parent=Msa0199980-mRNA-1
chr2_1 CDS 19437095 19437347 19437095 ID=Msa0199980-mRNA-1:cds;Parent=Msa0199980-mRNA-1
chr2_1 CDS 19434642 19436647 19434642 ID=Msa0199980-mRNA-1:cds;Parent=Msa0199980-mRNA-1
Gene Sequence

>Msa0199980

ATGCGCGCTCTGCTATCAAACTCTTCCTCTTCCTTTCTCAGACAACTTTCCACCTTCCTCCCCCATAATCATCGAAACCACCTCTCCTTCCCATCGGCTCCGCCGTCACCTCTCCTTCTCTCTCGCCGCTGCACCTCTCTCTTGGTCTCCGTCAACGTCATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTGTTGTTGATCAAGATTGTGTCAATAAATTGGTTAACAACATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATGTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAATGGGATGTTTGGCGCGTATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATGTTCATATGATTCGCTCTCATCGACGCATATCTGAGACACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGATTAAGACCAAAAGATTTGCATGAATATATATCCAAGCAAGCTGGTGGAATACAGATAGTTGGTTTTACAAAAAAAGTCCTTACGAATTACCTTGAAACCAAAAGGAAACAGTCACTAAAGTATGGTGAGGTGGGTGCACTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCGTTCTATTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTTATTACTTTTGACACCACATGCAAAACAAATAAGGGTTATCGACCGCTGGGAGTATTTGTTGGACTAAATAATCACAGGCAAACAGTCATTTTTGGTGCAGCATTGTTATATGACGAAACAATCCCTTCTTTCAAGTGGTTATTTGAAACATTTCTCAAGGCAATGGGTGGTAAAAAGCCAAAAACCATTTTGACGGATCAAGACACTGCGATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTTTACGGCATGTGAACCACTTATATCAAAAGAGTTCACAATTCGGTTTGGATTTTGAAGCATTGATAGATGTACACGAAGATGAGGGTGAATTTTTGAATGCTTGGAATTCTTTACTTGTTGAGCATAATATATTGGAAGGGTCGTGGTTGCATACAATTTATCAATTGAAGGAAAAATGGGCATGGACATATGTCCGGAAAACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAGAACCATTTGAAGTCTGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTTAATGATAAACGAAACAAAGAGTCAGAAGCTGAATATGAGTCAAAAAATAAGCTGCCTAGATTGAAAATGAAGAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATGCTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACAGTAAGTTAATTCCTGAAACCTATATACTTAAGCGATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGGGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTTAA
Protein sequence

>Msa0199980

MRALLSNSSSSFLRQLSTFLPHNHRNHLSFPSAPPSPLLLSRRCTSLLVSVNVMSEPHHPATNTNEPAAAVSDHPCAAAIVVDQDCVNKLVNNIHEQNVQHGQGSIANNVPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRMGCLARMVISLDRKIEKYKVVDFIAEHNHQLQPEHVHMIRSHRRISETQASQIVLGDESGLRPKDLHEYISKQAGGIQIVGFTKKVLTNYLETKRKQSLKYGEVGALMMYFKKESENPSFYYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTCKTNKGYRPLGVFVGLNNHRQTVIFGAALLYDETIPSFKWLFETFLKAMGGKKPKTILTDQDTAMAKAISLVMPETFHGLCTWHIRQNALRHVNHLYQKSSQFGLDFEALIDVHEDEGEFLNAWNSLLVEHNILEGSWLHTIYQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNDKRNKESEAEYESKNKLPRLKMKKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYAVTNYDNPTERIVMGNAMEQKVSCDCRKFETHGILCSHALKVLDVMNSKLIPETYILKRWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESGGMVHVSISIANDEI*