AlfalfaGEDB | Msa0199980

M. sativa cultivar zhongmu-4 / Msa0199980

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199980	XP_024628698.2	95.136	699	34	0	54	752	1	699	0.0	1381

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199980	sp\|Q9SZL8\|FRS5_ARATH	33.794	651	416	10	86	724	46	693	3.43e-118	377

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199980	A0A3Q7Y261	82.063	669	116	2	85	752	10	675	0.0	1140

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0199980	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199980	MtrunA17_Chr3g0082121	72.117	685	181	3	69	752	2	677	0.0	1003
Msa0199980	MtrunA17_Chr2g0324011	47.314	577	294	6	111	680	10	583	0.0	530
Msa0199980	MtrunA17_Chr1g0164591	73.968	315	73	2	189	502	1	307	1.92e-171	495
Msa0199980	MtrunA17_Chr6g0458391	41.653	605	308	12	75	666	194	766	4.00e-155	469
Msa0199980	MtrunA17_Chr6g0458391	37.594	133	80	3	110	241	90	220	2.83e-20	96.3
Msa0199980	MtrunA17_Chr1g0203721	38.473	655	391	8	102	746	54	706	2.01e-153	469
Msa0199980	MtrunA17_Chr5g0448761	34.504	655	410	12	111	751	60	709	1.26e-124	390
Msa0199980	MtrunA17_Chr1g0202341	33.388	605	384	10	75	665	10	609	4.05e-108	344
Msa0199980	MtrunA17_Chr8g0363841	32.689	569	359	10	112	665	18	577	1.44e-101	327
Msa0199980	MtrunA17_Chr2g0287651	33.087	677	391	18	94	736	45	693	4.48e-101	331

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199980	AT4G38180.1	33.794	651	416	10	86	724	46	693	3.49e-119	377
Msa0199980	AT4G15090.1	29.213	623	428	6	111	727	51	666	5.67e-94	311
Msa0199980	AT4G15090.5	29.213	623	428	6	111	727	51	666	5.67e-94	311
Msa0199980	AT4G15090.3	29.213	623	428	6	111	727	51	666	5.67e-94	311
Msa0199980	AT4G15090.2	29.213	623	428	6	111	727	51	666	5.67e-94	311
Msa0199980	AT4G15090.4	29.213	623	428	6	111	727	51	666	5.67e-94	311
Msa0199980	AT1G76320.3	30.795	604	390	13	115	710	1	584	3.85e-89	294
Msa0199980	AT1G76320.1	30.795	604	390	13	115	710	1	584	8.59e-89	295
Msa0199980	AT1G76320.4	30.795	604	390	13	115	710	1	584	8.59e-89	295
Msa0199980	AT1G76320.2	30.795	604	390	13	115	710	1	584	1.04e-88	295

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

Find 157 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCCCTTCTTTCAAG+TGG	0.538998	2_1:-19435761	Msa0199980:CDS
AAACCACCTCTCCTTCCCAT+CGG	0.675923	2_1:-19437251	Msa0199980:CDS
AAACCTATATACTTAAGCGA+TGG	0.590891	2_1:-19434921	Msa0199980:CDS
AAAGAGTTCACAATTCGGTT+TGG	0.397902	2_1:-19435565	Msa0199980:CDS
AAATAAGGGTTATCGACCGC+TGG	0.503228	2_1:-19435850	Msa0199980:CDS
AACAACAATGGCAGCGGCGC+AGG	0.452252	2_1:+19437102	None:intergenic
AAGATTCACATGCTACAAAG+AGG	0.619398	2_1:-19436414	Msa0199980:CDS
AAGTATGTGGATGGAGAATC+AGG	0.314708	2_1:-19434688	Msa0199980:CDS
AAGTTGTCTGAGAAAGGAAG+AGG	0.516512	2_1:+19437300	None:intergenic
AATAAGGGTTATCGACCGCT+GGG	0.601235	2_1:-19435849	Msa0199980:CDS

Showing 1 to 10 of 157 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTACCTTGATCAACAACAA+TGG	+	chr2_1:19434880-19434899	None:intergenic	30.0%
TTAAAAAAACATTGGGGGAA+AGG	+	chr2_1:19435073-19435092	None:intergenic	30.0%
AGAAATTAGAATGGGATGTT+TGG	-	chr2_1:19435625-19435644	Msa0199980:CDS	30.0%
TGAAAGTCATAATAGAACGA+GGG	+	chr2_1:19435989-19436008	None:intergenic	30.0%
TTGAAAGTCATAATAGAACG+AGG	+	chr2_1:19435990-19436009	None:intergenic	30.0%
ACCACATGCAAAACAAATAA+GGG	-	chr2_1:19436103-19436122	Msa0199980:CDS	30.0%
TTGTTGGACTAAATAATCAC+AGG	-	chr2_1:19436146-19436165	Msa0199980:CDS	30.0%
CAAATAACCACTTGAAAGAA+GGG	+	chr2_1:19436216-19436235	None:intergenic	30.0%
TCAAATAACCACTTGAAAGA+AGG	+	chr2_1:19436217-19436236	None:intergenic	30.0%
GTTGAGCATAATATATTGGA+AGG	-	chr2_1:19436493-19436512	Msa0199980:CDS	30.0%

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	19434642	19437347	19434642	ID=Msa0199980;Name=Msa0199980
chr2_1	mRNA	19434642	19437347	19434642	ID=Msa0199980-mRNA-1;Parent=Msa0199980;Name=Msa0199980-mRNA-1;_AED=0.21;_eAED=0.25;_QI=0\|0\|0\|1\|1\|1\|2\|0\|752
chr2_1	exon	19437095	19437347	19437095	ID=Msa0199980-mRNA-1:exon:8138;Parent=Msa0199980-mRNA-1
chr2_1	exon	19434642	19436647	19434642	ID=Msa0199980-mRNA-1:exon:8137;Parent=Msa0199980-mRNA-1
chr2_1	CDS	19437095	19437347	19437095	ID=Msa0199980-mRNA-1:cds;Parent=Msa0199980-mRNA-1
chr2_1	CDS	19434642	19436647	19434642	ID=Msa0199980-mRNA-1:cds;Parent=Msa0199980-mRNA-1

Gene Sequence

>Msa0199980

ATGCGCGCTCTGCTATCAAACTCTTCCTCTTCCTTTCTCAGACAACTTTCCACCTTCCTCCCCCATAATCATCGAAACCACCTCTCCTTCCCATCGGCTCCGCCGTCACCTCTCCTTCTCTCTCGCCGCTGCACCTCTCTCTTGGTCTCCGTCAACGTCATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTGTTGTTGATCAAGATTGTGTCAATAAATTGGTTAACAACATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATGTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAATGGGATGTTTGGCGCGTATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATGTTCATATGATTCGCTCTCATCGACGCATATCTGAGACACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGATTAAGACCAAAAGATTTGCATGAATATATATCCAAGCAAGCTGGTGGAATACAGATAGTTGGTTTTACAAAAAAAGTCCTTACGAATTACCTTGAAACCAAAAGGAAACAGTCACTAAAGTATGGTGAGGTGGGTGCACTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCGTTCTATTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTTATTACTTTTGACACCACATGCAAAACAAATAAGGGTTATCGACCGCTGGGAGTATTTGTTGGACTAAATAATCACAGGCAAACAGTCATTTTTGGTGCAGCATTGTTATATGACGAAACAATCCCTTCTTTCAAGTGGTTATTTGAAACATTTCTCAAGGCAATGGGTGGTAAAAAGCCAAAAACCATTTTGACGGATCAAGACACTGCGATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTTTACGGCATGTGAACCACTTATATCAAAAGAGTTCACAATTCGGTTTGGATTTTGAAGCATTGATAGATGTACACGAAGATGAGGGTGAATTTTTGAATGCTTGGAATTCTTTACTTGTTGAGCATAATATATTGGAAGGGTCGTGGTTGCATACAATTTATCAATTGAAGGAAAAATGGGCATGGACATATGTCCGGAAAACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAGAACCATTTGAAGTCTGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTTAATGATAAACGAAACAAAGAGTCAGAAGCTGAATATGAGTCAAAAAATAAGCTGCCTAGATTGAAAATGAAGAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATGCTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACAGTAAGTTAATTCCTGAAACCTATATACTTAAGCGATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGGGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTTAA

Protein sequence

>Msa0199980

MRALLSNSSSSFLRQLSTFLPHNHRNHLSFPSAPPSPLLLSRRCTSLLVSVNVMSEPHHPATNTNEPAAAVSDHPCAAAIVVDQDCVNKLVNNIHEQNVQHGQGSIANNVPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRMGCLARMVISLDRKIEKYKVVDFIAEHNHQLQPEHVHMIRSHRRISETQASQIVLGDESGLRPKDLHEYISKQAGGIQIVGFTKKVLTNYLETKRKQSLKYGEVGALMMYFKKESENPSFYYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTCKTNKGYRPLGVFVGLNNHRQTVIFGAALLYDETIPSFKWLFETFLKAMGGKKPKTILTDQDTAMAKAISLVMPETFHGLCTWHIRQNALRHVNHLYQKSSQFGLDFEALIDVHEDEGEFLNAWNSLLVEHNILEGSWLHTIYQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNDKRNKESEAEYESKNKLPRLKMKKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYAVTNYDNPTERIVMGNAMEQKVSCDCRKFETHGILCSHALKVLDVMNSKLIPETYILKRWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESGGMVHVSISIANDEI*