AlfalfaGEDB | Msa0202610

M. sativa cultivar zhongmu-4 / Msa0202610

KEGG: K08790
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202610	AES65502.2	78.899	436	41	3	19	426	86	498	0.0	689

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202610	sp\|Q54IH8\|NDRB_DICDI	38.826	443	195	10	24	426	108	514	5.45e-87	278

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202610	G7IQ89	78.899	436	41	3	19	426	86	498	0.0	689

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202610	MtrunA17_Chr2g0299781	77.803	446	47	4	19	435	86	508	0.0	688
Msa0202610	MtrunA17_Chr3g0135951	61.470	449	117	5	19	434	67	492	0.0	540
Msa0202610	MtrunA17_Chr1g0183651	53.972	428	136	5	19	418	93	487	4.43e-146	427
Msa0202610	MtrunA17_Chr1g0187581	53.271	428	140	6	19	418	90	485	4.83e-144	421
Msa0202610	MtrunA17_Chr7g0261491	51.852	432	144	5	19	418	93	492	1.84e-141	416
Msa0202610	MtrunA17_Chr1g0167351	52.164	439	147	8	12	420	76	481	3.54e-140	412
Msa0202610	MtrunA17_Chr1g0153321	51.773	423	138	9	22	413	84	471	1.48e-132	391
Msa0202610	MtrunA17_Chr1g0167311	49.545	440	156	9	12	420	81	485	4.95e-130	385
Msa0202610	MtrunA17_Chr6g0478601	32.425	367	175	9	40	376	105	428	3.68e-44	161
Msa0202610	MtrunA17_Chr4g0018201	31.536	371	173	10	40	377	753	1075	4.59e-41	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202610	AT4G33080.1	60.780	436	119	4	19	425	67	479	0.0	523
Msa0202610	AT4G33080.2	60.502	438	121	4	19	427	67	481	0.0	523
Msa0202610	AT2G19400.1	60.412	437	120	4	19	425	78	491	0.0	520
Msa0202610	AT3G23310.1	54.253	435	141	7	12	418	86	490	6.28e-150	438
Msa0202610	AT4G14350.2	53.563	435	142	6	12	418	85	487	9.73e-148	432
Msa0202610	AT4G14350.1	53.563	435	142	6	12	418	85	487	9.73e-148	432
Msa0202610	AT4G14350.4	53.563	435	142	6	12	418	85	487	9.73e-148	432
Msa0202610	AT4G14350.3	53.563	435	142	6	12	418	85	487	1.02e-147	431
Msa0202610	AT2G20470.3	52.103	428	143	6	19	418	97	490	2.35e-139	409
Msa0202610	AT2G20470.2	52.103	428	143	6	19	418	97	490	1.51e-138	409

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Find 119 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTATGACTTGCTGC+AGG	0.634849	2_1:+25095172	Msa0202610:CDS
AAACCACTTAAAATTTCCGG+AGG	0.652753	2_1:+25095608	Msa0202610:CDS
AAAGACACCATCATCGAAGA+AGG	0.565791	2_1:-25097915	None:intergenic
AAAGGCTCCCCTGCCAGTAA+TGG	0.536772	2_1:-25093502	None:intergenic
AAAGTCATTATATCACCACC+AGG	0.685675	2_1:-25094030	None:intergenic
AAATGGTCATATGAAATTGT+CGG	0.505117	2_1:+25094282	Msa0202610:CDS
AACATTGGCAAATGAATAGG+AGG	0.556644	2_1:+25094464	Msa0202610:CDS
AACCTTCTCTTAGACATAAA+TGG	0.288023	2_1:+25094265	Msa0202610:CDS
AACGATACAATGGACGTTGA+TGG	0.406147	2_1:+25094385	Msa0202610:CDS
AACTCAAGCAAAACATAATC+TGG	0.410177	2_1:-25094793	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATATCACAGCAAAATGT+GGG	+	chr2_1:25093713-25093732	Msa0202610:intron	30.0%
AAGAAACTTTGACAAAAGTG+TGG	+	chr2_1:25094064-25094083	Msa0202610:CDS	30.0%
GTGTTTATGAATAGACTCAA+TGG	-	chr2_1:25094120-25094139	None:intergenic	30.0%
AACCTTCTCTTAGACATAAA+TGG	+	chr2_1:25094265-25094284	Msa0202610:CDS	30.0%
CATATGAAATTGTCGGATTT+CGG	+	chr2_1:25094289-25094308	Msa0202610:CDS	30.0%
TCTATCACCTATAAGTGAAA+AGG	+	chr2_1:25094339-25094358	Msa0202610:CDS	30.0%
TGATAACTTGAACGATACAA+TGG	+	chr2_1:25094375-25094394	Msa0202610:CDS	30.0%
TTCAACATTGGCAAATGAAT+AGG	+	chr2_1:25094461-25094480	Msa0202610:CDS	30.0%
AACTCAAGCAAAACATAATC+TGG	-	chr2_1:25094796-25094815	None:intergenic	30.0%
GTATCGCAATACTTCAATAT+GGG	-	chr2_1:25094850-25094869	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	25093354	25097999	25093354	ID=Msa0202610;Name=Msa0202610
chr2_1	mRNA	25093354	25097999	25093354	ID=Msa0202610-mRNA-1;Parent=Msa0202610;Name=Msa0202610-mRNA-1;_AED=0.16;_eAED=0.18;_QI=0\|0.6\|0.54\|1\|0.6\|0.45\|11\|276\|435
chr2_1	exon	25093354	25093530	25093354	ID=Msa0202610-mRNA-1:exon:9622;Parent=Msa0202610-mRNA-1
chr2_1	exon	25093913	25094157	25093913	ID=Msa0202610-mRNA-1:exon:9623;Parent=Msa0202610-mRNA-1
chr2_1	exon	25094249	25094492	25094249	ID=Msa0202610-mRNA-1:exon:9624;Parent=Msa0202610-mRNA-1
chr2_1	exon	25094719	25094838	25094719	ID=Msa0202610-mRNA-1:exon:9625;Parent=Msa0202610-mRNA-1
chr2_1	exon	25095168	25095278	25095168	ID=Msa0202610-mRNA-1:exon:9626;Parent=Msa0202610-mRNA-1
chr2_1	exon	25095594	25095725	25095594	ID=Msa0202610-mRNA-1:exon:9627;Parent=Msa0202610-mRNA-1
chr2_1	exon	25095821	25095934	25095821	ID=Msa0202610-mRNA-1:exon:9628;Parent=Msa0202610-mRNA-1
chr2_1	exon	25096064	25096111	25096064	ID=Msa0202610-mRNA-1:exon:9629;Parent=Msa0202610-mRNA-1
chr2_1	exon	25096467	25096581	25096467	ID=Msa0202610-mRNA-1:exon:9630;Parent=Msa0202610-mRNA-1
chr2_1	exon	25097641	25097685	25097641	ID=Msa0202610-mRNA-1:exon:9631;Parent=Msa0202610-mRNA-1
chr2_1	exon	25097767	25097999	25097767	ID=Msa0202610-mRNA-1:exon:9632;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25093354	25093530	25093354	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25093913	25094157	25093913	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25094249	25094492	25094249	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25094719	25094838	25094719	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25095168	25095278	25095168	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25095594	25095725	25095594	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25095821	25095934	25095821	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25096064	25096111	25096064	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25096467	25096581	25096467	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	CDS	25097641	25097642	25097641	ID=Msa0202610-mRNA-1:cds;Parent=Msa0202610-mRNA-1
chr2_1	three_prime_UTR	25097643	25097685	25097643	ID=Msa0202610-mRNA-1:three_prime_utr;Parent=Msa0202610-mRNA-1
chr2_1	three_prime_UTR	25097767	25097999	25097767	ID=Msa0202610-mRNA-1:three_prime_utr;Parent=Msa0202610-mRNA-1

Gene Sequence

>Msa0202610

CTTTCCGGTGCTACAAAAGGAGTTAGAATCTTCGCATCTACCAGAAGAACATATCAATTCAATTTACTGAAGGATTTAGAGAGCAAGGAGACTGAGTATATGCGGTTAAAAACGCATAAAATATGTGTTGATGATTTTGACCTTGTAACCATTACTGGCAGGGGAGCCTTTGGTGAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAATGACTGCATTGTGAAACTTTATTACTCATTTCAAGATCCTGAATTCTTATATCTTATAATGGAATATTTACCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACAAAAGTGTGGCAAGATTTTACATCGCCCAAACCGTTTTGGCCATTGAGTCTATTCATAAACACAATTACATTCATCGGTTGGGATATAAAACCGGACAACCTTCTCTTAGACATAAATGGTCATATGAAATTGTCGGATTTCGGTCTTCGCAACCCACTTGAAGTCTCAAATCTATCACCTATAAGTGAAAAGGAAATATTGGATGATGATAACTTGAACGATACAATGGACGTTGATGGAAATTTCCCAAATAGTAGAAATGCTAGGCGTTGGAAAAGTCCTCTCGAACAACTTCAACATTGGCAAATGAATAGGAGGAAGTTGGCATTTTCCACTGCTGGAACTCCAGATTATATTGCTCCGGAAGTGTTACTGAAAAAGGGTTATGGCGTGGAACTCCAGATTATGTTTTGCTTGAGTTGCATCTCTTTATTTTATGTTTTGAATAAAAATGTTATGACTTGCTGCAGGTGGTCTCTTGGCGCTATAATGTATGAGATGCTTGTCGGTTATCCTCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTCCACTGGAAAAACCACTTAAAATTTCCGGAGGAGGCAAGATTGACACCCGAAGCGAAAGATCTGATGTACAGGTTGCTTTCTGGTGTTCCACATAGGCTTGGAACCAGAGGATCAAAAGAAATTAAAGATCATCCTTGGTTTAGGGATGTCCTATGGGATAGGCTCTATGAAACCGAGGCAGCATTTAAACCACGAGTCGTAGGGGAACTTGACACTCAGAATTTTATGAAATTCGAAGAGGTTGAACAACCAATGCCAGCTCGATCTGGTTCCGGACCCATCAGAAAGACACTCTTAACTCCTCAAGATCTCAGTTTTGTTGGCTATACATATAAGAATTTTGCCGCTGTCGAGGGGAAGCGTCATTCTGTTGGTAAGTACTTTTCACATAAAAGCACAATATAA

Protein sequence

>Msa0202610

LSGATKGVRIFASTRRTYQFNLLKDLESKETEYMRLKTHKICVDDFDLVTITGRGAFGEVEHVRAERNVLAEVANDCIVKLYYSFQDPEFLYLIMEYLPGGDIMTLLMREETLTKVWQDFTSPKPFWPLSLFINTITFIGWDIKPDNLLLDINGHMKLSDFGLRNPLEVSNLSPISEKEILDDDNLNDTMDVDGNFPNSRNARRWKSPLEQLQHWQMNRRKLAFSTAGTPDYIAPEVLLKKGYGVELQIMFCLSCISLFYVLNKNVMTCCRWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPEEARLTPEAKDLMYRLLSGVPHRLGTRGSKEIKDHPWFRDVLWDRLYETEAAFKPRVVGELDTQNFMKFEEVEQPMPARSGSGPIRKTLLTPQDLSFVGYTYKNFAAVEGKRHSVGKYFSHKSTI*