AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202850 MtrunA17_Chr2g0300241 99.605 253 1 0 1 253 1 253 0.0 521
Msa0202850 MtrunA17_Chr8g0343441 74.016 254 56 5 8 253 5 256 5.83e-117 335
Msa0202850 MtrunA17_Chr1g0150821 73.282 262 52 3 7 253 5 263 3.79e-114 328
Msa0202850 MtrunA17_Chr2g0329821 72.177 248 58 5 13 252 6 250 1.09e-106 308
Msa0202850 MtrunA17_Chr4g0076771 68.548 248 68 6 12 252 10 254 1.55e-105 306
Msa0202850 MtrunA17_Chr4g0006381 59.231 260 81 6 1 253 1 242 2.35e-89 264
Msa0202850 MtrunA17_Chr7g0242511 57.647 255 93 6 1 253 1 242 2.54e-84 251
Msa0202850 MtrunA17_Chr8g0366371 90.000 80 8 0 133 212 2 81 1.30e-24 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202850 AT5G20510.1 68.702 262 69 3 3 253 1 260 5.33e-119 340
Msa0202850 AT3G42790.1 68.775 253 72 4 3 252 1 249 2.97e-110 318
Msa0202850 AT2G02470.1 69.444 252 63 6 12 253 9 256 5.37e-107 310
Msa0202850 AT2G02470.2 69.758 248 60 6 12 253 9 247 6.11e-105 304
Msa0202850 AT1G14510.1 70.082 244 64 5 12 250 9 248 1.31e-101 296
Msa0202850 AT5G26210.1 71.542 253 63 2 7 252 4 254 3.23e-100 293
Msa0202850 AT5G20510.2 67.890 218 57 3 47 253 4 219 5.65e-92 270
Msa0202850 AT5G05610.2 62.140 243 82 6 11 252 7 240 2.34e-88 262
Msa0202850 AT5G05610.1 62.140 243 82 6 11 252 7 240 2.34e-88 262
Msa0202850 AT3G11200.1 61.508 252 88 5 3 252 1 245 4.41e-86 256
Msa0202850 AT5G20510.3 75.758 165 40 0 3 167 1 165 5.76e-84 249
Msa0202850 AT3G11200.2 61.111 216 75 5 39 252 24 232 6.79e-71 217
Msa0202850 AT2G02470.3 75.796 157 36 2 12 168 9 163 1.38e-69 215

Find 85 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATATCCTGGCGAATTA+TGG 0.222686 2_1:-25689166 Msa0202850:CDS
TTCTACTTCGGCGCAAGATT+TGG 0.307978 2_1:-25688999 Msa0202850:CDS
GGGACTGAAATGCACGAAAA+TGG 0.334313 2_1:+25683977 None:intergenic
TATCTGCATCAGATGAGTTC+TGG 0.365648 2_1:-25684213 Msa0202850:CDS
CTCTCTGTTGCTTTCTACTT+CGG 0.381438 2_1:-25689011 Msa0202850:CDS
CATTGGGCATCAACTTTGCT+AGG 0.401762 2_1:-25689094 Msa0202850:CDS
ATATAAATATCCCAATATAC+AGG 0.402259 2_1:+25683879 None:intergenic
TGGATATCCTGGCGAATTAT+GGG 0.410663 2_1:-25689165 Msa0202850:CDS
AGAAGTTCCTCCTGAACTTC+CGG 0.414185 2_1:-25689123 Msa0202850:CDS
TTGATGCCCAATGCAGGTTC+CGG 0.415327 2_1:+25689104 None:intergenic
GGCATCAACTTTGCTAGGGA+TGG 0.420013 2_1:-25689089 Msa0202850:CDS
AAGGAGAATCTTTCTCTGTA+TGG 0.424220 2_1:-25689185 Msa0202850:CDS
GACTTCAAGGGCCGTAGAGC+TGG 0.434123 2_1:-25690767 Msa0202850:CDS
AGCTGTCTTCCGTGACTTCA+AGG 0.434860 2_1:-25690780 Msa0202850:CDS
TGATCTGCCAACAATATTTG+AGG 0.435492 2_1:-25684692 Msa0202850:CDS
TGAACTTCCGGAACCTGCAT+TGG 0.439289 2_1:-25689111 Msa0202850:CDS
AAAAGGGTCATGGAACTTGC+TGG 0.449501 2_1:-25690836 Msa0202850:exon
CATGCAGCGTGGATCTGAAC+TGG 0.451670 2_1:-25684332 Msa0202850:intron
TCACTTCCCTATGGTATTCA+AGG 0.455959 2_1:+25684073 None:intergenic
CTTTCTCTGTATGGATATCC+TGG 0.457002 2_1:-25689176 Msa0202850:CDS
AATGCAGGTTCCGGAAGTTC+AGG 0.458761 2_1:+25689113 None:intergenic
GAACTTCCGGAACCTGCATT+GGG 0.459330 2_1:-25689110 Msa0202850:CDS
ATTTATATGTTCTTAGTACC+TGG 0.465385 2_1:-25683864 Msa0202850:three_prime_UTR
TTAAATATTTGATAGTTGAC+TGG 0.475722 2_1:-25683927 Msa0202850:three_prime_UTR
TTGATTAAAGCTCTCACCAC+TGG 0.479655 2_1:-25690743 Msa0202850:intron
CTGTTGTGACTTGAGACAGA+TGG 0.481520 2_1:+25684631 None:intergenic
TTGATGTGCTCAGCCCGGGC+AGG 0.484353 2_1:+25684136 None:intergenic
CTGCTTGATGTGCTCAGCCC+GGG 0.490873 2_1:+25684132 None:intergenic
ACAATATTTGAGGTTGTGAC+CGG 0.491460 2_1:-25684682 Msa0202850:CDS
TTGCTGTTCACAGTGATACA+TGG 0.492333 2_1:-25689037 Msa0202850:CDS
ACTGCTTGATGTGCTCAGCC+CGG 0.493704 2_1:+25684131 None:intergenic
TCAGGAGGAACTTCTTCAGC+AGG 0.502111 2_1:+25689131 None:intergenic
CTTGCAACAATAAGAGAGTC+CGG 0.504167 2_1:-25684096 Msa0202850:CDS
TGTTCGCAAGCATGCTGCAT+TGG 0.504506 2_1:-25683780 Msa0202850:three_prime_UTR
TATCCCAATATACAGGGAAA+AGG 0.507518 2_1:+25683886 None:intergenic
GTGTGAAGATCACTCCTGCC+CGG 0.508233 2_1:-25684150 Msa0202850:CDS
ATCTGCTAAGAAGCAGACTA+AGG 0.509595 2_1:-25684659 Msa0202850:CDS
AGTCTGCTTCTTAGCAGATC+CGG 0.514682 2_1:+25684663 None:intergenic
ATATGTGAGAAGTGGTATCA+TGG 0.515110 2_1:-25684178 Msa0202850:CDS
TTCCCTATGGTATTCAAGGC+CGG 0.515731 2_1:+25684077 None:intergenic
AACAGCAACAAGTCAAAGTC+AGG 0.516207 2_1:-25684613 Msa0202850:CDS
CCTAACCAGGGTCACACTGC+TGG 0.524327 2_1:+25690604 None:intergenic
GTGACTTCCCATAATTCGCC+AGG 0.524535 2_1:+25689158 None:intergenic
GCATCAACTTTGCTAGGGAT+GGG 0.525115 2_1:-25689088 Msa0202850:CDS
GACGACGAAGAGGAGGATCA+AGG 0.529279 2_1:-25684265 Msa0202850:CDS
CTCTACGGCCCTTGAAGTCA+CGG 0.531441 2_1:+25690771 None:intergenic
TATCCACAAAATAAGTTGAC+GGG 0.536138 2_1:+25683957 None:intergenic
ATGGGATGCAAGAAAAGGAT+TGG 0.537031 2_1:-25689070 Msa0202850:CDS
GTCATGGAACTTGCTGGTGA+TGG 0.537299 2_1:-25690830 Msa0202850:CDS
GATCATTAATCAGAGTGAAA+AGG 0.538004 2_1:+25684710 None:intergenic
GTCACAACCTCAAATATTGT+TGG 0.541746 2_1:+25684685 None:intergenic
TTTGTGATCTGCCACATTCG+CGG 0.542627 2_1:-25683747 Msa0202850:three_prime_UTR
ACGACGAAGAGGAGGATCAA+GGG 0.543159 2_1:-25684264 Msa0202850:CDS
TCAACAGTACGAGGGTCAAA+CGG 0.546490 2_1:+25690803 None:intergenic
ATATCCACAAAATAAGTTGA+CGG 0.551074 2_1:+25683956 None:intergenic
TCGCTGCTGTAACTCCATGC+TGG 0.551982 2_1:-25684039 Msa0202850:three_prime_UTR
AGAAGTAACTCACTTCCCTA+TGG 0.554443 2_1:+25684064 None:intergenic
AAAAGAAGATGACGAGGGAG+TGG 0.555346 2_1:-25684287 Msa0202850:CDS
TAGGGATGGGATGCAAGAAA+AGG 0.555698 2_1:-25689075 Msa0202850:CDS
GCAAAGTTGATGCCCAATGC+AGG 0.559003 2_1:+25689098 None:intergenic
ACGCTCTGATTCCGCGAATG+TGG 0.560095 2_1:+25683736 None:intergenic
TGTGAAGATCACTCCTGCCC+GGG 0.562262 2_1:-25684149 Msa0202850:CDS
ACTCTCTTATTGTTGCAAGC+AGG 0.563182 2_1:+25684100 None:intergenic
AGATGAAGATGAAAATGAGA+GGG 0.569001 2_1:+25691002 None:intergenic
GCTGTCTTCCGTGACTTCAA+GGG 0.569487 2_1:-25690779 Msa0202850:CDS
AAGATGAAGATGAAAATGAG+AGG 0.575792 2_1:+25691001 None:intergenic
CTTTAATCAAGCCAGCTCTA+CGG 0.578337 2_1:+25690756 None:intergenic
TTGGCTTTGATAAAGCCGAC+AGG 0.579784 2_1:-25688980 Msa0202850:intron
AGTCCGGCCTTGAATACCAT+AGG 0.585372 2_1:-25684080 Msa0202850:exon
CCAATATACAGGGAAAAGGT+AGG 0.585786 2_1:+25683890 None:intergenic
ATTGGGCATCAACTTTGCTA+GGG 0.592516 2_1:-25689093 Msa0202850:CDS
GCCAGCAAAAGAAGATGACG+AGG 0.593624 2_1:-25684293 Msa0202850:CDS
CAAGGGGAATGCGCTGCATG+CGG 0.601102 2_1:-25684247 Msa0202850:CDS
AACTAGTTAGCTGTCCAGCA+TGG 0.601903 2_1:+25684025 None:intergenic
CGACGAAGAGGAGGATCAAG+GGG 0.610579 2_1:-25684263 Msa0202850:CDS
CGAGGGAGTGGACGACGAAG+AGG 0.626370 2_1:-25684275 Msa0202850:CDS
GTCCGGCCTTGAATACCATA+GGG 0.629003 2_1:-25684079 Msa0202850:exon
GGGAGTGGACGACGAAGAGG+AGG 0.630295 2_1:-25684272 Msa0202850:CDS
GCAGGTTCCGGAAGTTCAGG+AGG 0.632832 2_1:+25689116 None:intergenic
TATAAATATCCCAATATACA+GGG 0.636714 2_1:+25683880 None:intergenic
GTCAAAGTCAGGCTCAAAAG+CGG 0.660535 2_1:-25684602 Msa0202850:intron
AAGACAGCTTCAACAGTACG+AGG 0.662619 2_1:+25690794 None:intergenic
GCTGCGACATATGTGAGAAG+TGG 0.672986 2_1:-25684186 Msa0202850:CDS
AGACAGCTTCAACAGTACGA+GGG 0.736429 2_1:+25690795 None:intergenic
CCAGCAAAAGAAGATGACGA+GGG 0.742179 2_1:-25684292 Msa0202850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAAAAAATGAAC+TGG - chr2_1:25684603-25684622 Msa0202850:CDS 10.0%
!!! TTAATTCAATTTTTTTTTTC+TGG + chr2_1:25685339-25685358 None:intergenic 10.0%
!!! AAACACTTTAAAAAAATTTT+TGG + chr2_1:25687127-25687146 None:intergenic 10.0%
!! ACACAAAAATTAATAAAAAA+TGG + chr2_1:25687489-25687508 None:intergenic 10.0%
!!! TTTTATAAATAAACCTTTTT+AGG + chr2_1:25687981-25688000 None:intergenic 10.0%
!! TAAAAAATATAAAATGAATG+AGG - chr2_1:25688787-25688806 Msa0202850:intron 10.0%
!! AATAAAAATGAAAATATACA+AGG + chr2_1:25690205-25690224 None:intergenic 10.0%
!!! ATTGTATATGTTTTCAAAAA+TGG - chr2_1:25684981-25685000 Msa0202850:intron 15.0%
!!! TTTATGAAATAATAGGATTT+TGG + chr2_1:25685036-25685055 None:intergenic 15.0%
!!! TTTTTACTTTTAATTCATGT+AGG + chr2_1:25686430-25686449 None:intergenic 15.0%
!!! AATGTTATCATTTTTGAAAA+CGG + chr2_1:25687003-25687022 None:intergenic 15.0%
!!! AGAAAATTTTACTTTGATTT+TGG + chr2_1:25687073-25687092 None:intergenic 15.0%
!!! ATTTTAAAAAATGAACTGGT+TGG - chr2_1:25684607-25684626 Msa0202850:CDS 20.0%
!! TACAAACAGAATATAGAATA+TGG + chr2_1:25684809-25684828 None:intergenic 20.0%
!! TGGATATTTATACTAGATTT+GGG + chr2_1:25685239-25685258 None:intergenic 20.0%
!! ATGGATATTTATACTAGATT+TGG + chr2_1:25685240-25685259 None:intergenic 20.0%
!!! AATTTTTTTTTTCTGGATTC+GGG + chr2_1:25685332-25685351 None:intergenic 20.0%
!!! CAATTTTTTTTTTCTGGATT+CGG + chr2_1:25685333-25685352 None:intergenic 20.0%
!! AACATTCCATAACATAATAA+AGG + chr2_1:25685824-25685843 None:intergenic 20.0%
!! TTATTATGTTATGGAATGTT+TGG - chr2_1:25685824-25685843 Msa0202850:intron 20.0%
!! ACAAGAAATATAACGATTAA+CGG + chr2_1:25685860-25685879 None:intergenic 20.0%
!! AGTATATGTTTGTATATATG+TGG + chr2_1:25685964-25685983 None:intergenic 20.0%
!!! TTTCGCTTTAATGTTTTAAA+AGG + chr2_1:25686279-25686298 None:intergenic 20.0%
!!! ATTTACATCATGCATTTTTT+GGG + chr2_1:25686395-25686414 None:intergenic 20.0%
!!! AATTTACATCATGCATTTTT+TGG + chr2_1:25686396-25686415 None:intergenic 20.0%
!!! GATTTTGGAAAAAATAAGAT+TGG + chr2_1:25687058-25687077 None:intergenic 20.0%
!!! TTTTAAACGGTTTAATCATA+CGG - chr2_1:25687940-25687959 Msa0202850:intron 20.0%
!! AAAAAGGAAATTACCTAAAA+AGG - chr2_1:25687965-25687984 Msa0202850:intron 20.0%
!!! AATTGAGCCATTTTAAAATA+CGG - chr2_1:25688176-25688195 Msa0202850:intron 20.0%
!!! TTTTTGTCCGTATTTTAAAA+TGG + chr2_1:25688186-25688205 None:intergenic 20.0%
!!! AAGCATTAAACTTTTTCAAA+TGG - chr2_1:25688328-25688347 Msa0202850:intron 20.0%
!!! TATGTTGATGATATCATTTT+TGG - chr2_1:25688605-25688624 Msa0202850:intron 20.0%
!!! TTCACACATTTTTATTTTTG+TGG + chr2_1:25688633-25688652 None:intergenic 20.0%
!! TGACTTATGAAAATTCTATT+TGG + chr2_1:25688743-25688762 None:intergenic 20.0%
!!! TTAAATATTTGATAGTTGAC+TGG - chr2_1:25690828-25690847 Msa0202850:CDS 20.0%
!! TATAAATATCCCAATATACA+GGG + chr2_1:25690878-25690897 None:intergenic 20.0%
!! ATATAAATATCCCAATATAC+AGG + chr2_1:25690879-25690898 None:intergenic 20.0%
! TTTCTCTCTCTTCAAAAAAT+GGG + chr2_1:25683901-25683920 None:intergenic 25.0%
!! TTTTCTCTCTCTTCAAAAAA+TGG + chr2_1:25683902-25683921 None:intergenic 25.0%
!!! TTTTTTGAAGAGAGAGAAAA+AGG - chr2_1:25683902-25683921 Msa0202850:three_prime_UTR 25.0%
!!! TTTTTGAAGAGAGAGAAAAA+GGG - chr2_1:25683903-25683922 Msa0202850:three_prime_UTR 25.0%
!!! TAAGATTGTTTTGTGTTTGT+CGG - chr2_1:25684190-25684209 Msa0202850:CDS 25.0%
! CTTATATACTGTATTGTTTG+TGG - chr2_1:25684266-25684285 Msa0202850:CDS 25.0%
!!! AGTCATGTAATTTTTAACTG+TGG + chr2_1:25684567-25684586 None:intergenic 25.0%
! TAGAATATGGCAAAAATTGT+AGG + chr2_1:25684796-25684815 None:intergenic 25.0%
!!! ATTGTTTTGATGAACTTATC+TGG - chr2_1:25684833-25684852 Msa0202850:intron 25.0%
!!! TTGTTTTGATGAACTTATCT+GGG - chr2_1:25684834-25684853 Msa0202850:intron 25.0%
! CATAGGGTTTATGAAATAAT+AGG + chr2_1:25685043-25685062 None:intergenic 25.0%
! TCCAAAATCAAATACACATA+GGG + chr2_1:25685059-25685078 None:intergenic 25.0%
! ATCCAAAATCAAATACACAT+AGG + chr2_1:25685060-25685079 None:intergenic 25.0%
! TGGATTGACATTGTTTAAAA+AGG - chr2_1:25685075-25685094 Msa0202850:intron 25.0%
! TCATAGTATCATACATATCA+TGG + chr2_1:25685138-25685157 None:intergenic 25.0%
!!! ATTTTTTTTTTCTGGATTCG+GGG + chr2_1:25685331-25685350 None:intergenic 25.0%
! AAAAGAATTATCATACCTGT+CGG + chr2_1:25685793-25685812 None:intergenic 25.0%
! ATAACATAATAAAGGATTGG+AGG + chr2_1:25685816-25685835 None:intergenic 25.0%
! TCCAATCCTTTATTATGTTA+TGG - chr2_1:25685815-25685834 Msa0202850:intron 25.0%
! TCCATAACATAATAAAGGAT+TGG + chr2_1:25685819-25685838 None:intergenic 25.0%
! TTAAAGCGAAATAAAAGTGA+TGG - chr2_1:25686288-25686307 Msa0202850:intron 25.0%
!! ATTAGAGTACTTAAAATGCT+TGG - chr2_1:25686313-25686332 Msa0202850:intron 25.0%
!! AATCATTTTATCAACTCATG+CGG + chr2_1:25686364-25686383 None:intergenic 25.0%
! CTATTAAATGAATGCATGAT+AGG - chr2_1:25686474-25686493 Msa0202850:intron 25.0%
! TTGATAGGGTATAAAAGAAA+TGG - chr2_1:25686777-25686796 Msa0202850:intron 25.0%
! TGAAAATGGTTTAGAAAAAC+CGG + chr2_1:25686804-25686823 None:intergenic 25.0%
! AGAGAAACATATGTTGAAAA+TGG + chr2_1:25686818-25686837 None:intergenic 25.0%
!!! AGAAATTTTTTGAGTGAGAA+GGG + chr2_1:25686863-25686882 None:intergenic 25.0%
! TAGATCTACATCTTAAGATT+CGG - chr2_1:25687092-25687111 Msa0202850:intron 25.0%
! TAATCTCCTAATTTAACAAG+AGG + chr2_1:25687219-25687238 None:intergenic 25.0%
! ATTAGGAGATTAAATCTTCA+AGG - chr2_1:25687227-25687246 Msa0202850:intron 25.0%
! GATTATTTATAGCCAAAACT+AGG - chr2_1:25687627-25687646 Msa0202850:intron 25.0%
!!! TCCTTTTTTTAACCTAGTTT+TGG + chr2_1:25687642-25687661 None:intergenic 25.0%
!! CACGAACAAAACTTTTTAAA+CGG - chr2_1:25687927-25687946 Msa0202850:intron 25.0%
!!! ATTGCTTTATTTGTCTTTTC+AGG + chr2_1:25688060-25688079 None:intergenic 25.0%
! ACAAATAAAGCAATTTCAAC+TGG - chr2_1:25688066-25688085 Msa0202850:intron 25.0%
!!! GTGAAAAGTGCATTTTTAAA+TGG - chr2_1:25688353-25688372 Msa0202850:intron 25.0%
!! AAATGGTTTTCTAAATGAAG+AGG - chr2_1:25688370-25688389 Msa0202850:intron 25.0%
!! GTTAGCTTAAAAACATGATT+TGG + chr2_1:25688437-25688456 None:intergenic 25.0%
! AGCACATTCTTAATTGAAAA+TGG - chr2_1:25688509-25688528 Msa0202850:intron 25.0%
!!! ATTGAAAATGGATTTTCAAG+AGG - chr2_1:25688521-25688540 Msa0202850:intron 25.0%
! TGATATCATCAACATAAACT+TGG + chr2_1:25688601-25688620 None:intergenic 25.0%
! AGTTTAGATAAAGATGAGAA+TGG - chr2_1:25688845-25688864 Msa0202850:intron 25.0%
!! GTTTCTGAAAAAGAATATAG+AGG - chr2_1:25688875-25688894 Msa0202850:intron 25.0%
!!! AGGATTTTTAGATATCTAGT+AGG - chr2_1:25689013-25689032 Msa0202850:CDS 25.0%
!! TAGAACATTTTCTATACCAA+AGG + chr2_1:25689054-25689073 None:intergenic 25.0%
! AATTGTCAAAAGAAATAGTG+TGG - chr2_1:25689348-25689367 Msa0202850:intron 25.0%
! CAAAACTAAATGCAAACTAT+AGG + chr2_1:25689555-25689574 None:intergenic 25.0%
! TGTGTTATGCAATATCAAAA+TGG - chr2_1:25689573-25689592 Msa0202850:intron 25.0%
! TTTCTCTCTTTATGCAAAAT+AGG - chr2_1:25689735-25689754 Msa0202850:intron 25.0%
! TACATTGTAATTCTTCATGT+AGG - chr2_1:25690017-25690036 Msa0202850:intron 25.0%
!! TATTTTGCTTGAATAGATGT+AGG - chr2_1:25690321-25690340 Msa0202850:intron 25.0%
! TGTCTTATAATAATGCTGAA+TGG - chr2_1:25690347-25690366 Msa0202850:intron 25.0%
!! ATATCCACAAAATAAGTTGA+CGG + chr2_1:25690802-25690821 None:intergenic 25.0%
! ATTTATATGTTCTTAGTACC+TGG - chr2_1:25690891-25690910 Msa0202850:five_prime_UTR 25.0%
AGATGAAGATGAAAATGAGA+GGG + chr2_1:25683756-25683775 None:intergenic 30.0%
AAGATGAAGATGAAAATGAG+AGG + chr2_1:25683757-25683776 None:intergenic 30.0%
AGAACGAAGTGAAAGAAAAA+TGG + chr2_1:25683870-25683889 None:intergenic 30.0%
TACTGTATTGTTTGTGGATT+TGG - chr2_1:25684272-25684291 Msa0202850:CDS 30.0%
ACTGTATTGTTTGTGGATTT+GGG - chr2_1:25684273-25684292 Msa0202850:CDS 30.0%
ATGAACGTTGTGATTTGAAT+TGG - chr2_1:25684430-25684449 Msa0202850:intron 30.0%
TGAACGTTGTGATTTGAATT+GGG - chr2_1:25684431-25684450 Msa0202850:intron 30.0%
!! GTTTTGACAATGTTGTCATT+TGG - chr2_1:25684669-25684688 Msa0202850:CDS 30.0%
ACTTATATAGATCAACAACG+AGG + chr2_1:25684709-25684728 None:intergenic 30.0%
!! ACCCTATGTGTATTTGATTT+TGG - chr2_1:25685055-25685074 Msa0202850:intron 30.0%
AATATCCATGTAGATTTCGT+AGG - chr2_1:25685251-25685270 Msa0202850:intron 30.0%
! AAACTAGAAAACCTTTTACC+TGG - chr2_1:25685390-25685409 Msa0202850:intron 30.0%
TTGATATAACACCAGGTAAA+AGG + chr2_1:25685404-25685423 None:intergenic 30.0%
CATATGTTTGATATAACACC+AGG + chr2_1:25685411-25685430 None:intergenic 30.0%
AACATGTTCTACATCAGAAA+AGG - chr2_1:25685551-25685570 Msa0202850:intron 30.0%
! AAACACGGCAAAAATGTTTT+GGG + chr2_1:25685885-25685904 None:intergenic 30.0%
! AAAACACGGCAAAAATGTTT+TGG + chr2_1:25685886-25685905 None:intergenic 30.0%
!! TAAGTGTTGAACACATGTTT+AGG + chr2_1:25685937-25685956 None:intergenic 30.0%
CTGAACTTATGTTTCTTATG+CGG - chr2_1:25686060-25686079 Msa0202850:intron 30.0%
TTAAATGAATGCATGATAGG+AGG - chr2_1:25686477-25686496 Msa0202850:intron 30.0%
AAAATGATAAAGCGTAAGCA+AGG - chr2_1:25686585-25686604 Msa0202850:intron 30.0%
TAAACACAAGAAACAAGAAG+AGG - chr2_1:25686663-25686682 Msa0202850:intron 30.0%
AAACACAAGAAACAAGAAGA+GGG - chr2_1:25686664-25686683 Msa0202850:intron 30.0%
!!! CAGAAATTTTTTGAGTGAGA+AGG + chr2_1:25686864-25686883 None:intergenic 30.0%
CTTCTCACTCAAAAAATTTC+TGG - chr2_1:25686862-25686881 Msa0202850:intron 30.0%
TGTCTATGCAAATCAAGTTT+CGG + chr2_1:25687386-25687405 None:intergenic 30.0%
ATCTCTCAATCATTGATGAA+GGG + chr2_1:25687610-25687629 None:intergenic 30.0%
AATCTCTCAATCATTGATGA+AGG + chr2_1:25687611-25687630 None:intergenic 30.0%
GCCAAAACTAGGTTAAAAAA+AGG - chr2_1:25687638-25687657 Msa0202850:intron 30.0%
AAACTACCCTTAAAGAAACT+TGG - chr2_1:25687679-25687698 Msa0202850:intron 30.0%
TTCTCTCCAAGTTTCTTTAA+GGG + chr2_1:25687688-25687707 None:intergenic 30.0%
TTTCTCTCCAAGTTTCTTTA+AGG + chr2_1:25687689-25687708 None:intergenic 30.0%
! TGGAGAGAAAGAAAATGTTT+TGG - chr2_1:25687699-25687718 Msa0202850:intron 30.0%
!! AAAATGTTTTGGATGCTCTT+TGG - chr2_1:25687710-25687729 Msa0202850:intron 30.0%
ACCAATAACAATGTAACAAG+TGG - chr2_1:25687733-25687752 Msa0202850:intron 30.0%
! TCCACTTGTTACATTGTTAT+TGG + chr2_1:25687737-25687756 None:intergenic 30.0%
GTTTAATCATACGGACAAAA+AGG - chr2_1:25687949-25687968 Msa0202850:intron 30.0%
TATGTAAAAACAGAGCAAAG+TGG - chr2_1:25688206-25688225 Msa0202850:intron 30.0%
! TTTTCTTTATCTATGAAGCC+AGG + chr2_1:25688413-25688432 None:intergenic 30.0%
! TTTAAGACCATAAAGTGCTT+TGG + chr2_1:25688459-25688478 None:intergenic 30.0%
!! ATGAGTTTTTCTAAAAAGCG+TGG + chr2_1:25688558-25688577 None:intergenic 30.0%
AAATTCACTTTGCATGAGAT+TGG + chr2_1:25688663-25688682 None:intergenic 30.0%
AATGAATGAGGCAAAAATCA+TGG - chr2_1:25688799-25688818 Msa0202850:intron 30.0%
TCTTTATCTAAACTTGAGGA+TGG + chr2_1:25688839-25688858 None:intergenic 30.0%
CTCATCTTTATCTAAACTTG+AGG + chr2_1:25688843-25688862 None:intergenic 30.0%
! AAAGAATATAGAGGCATGAT+AGG - chr2_1:25688884-25688903 Msa0202850:intron 30.0%
CTCATTTAACTGCAGTTAAA+AGG - chr2_1:25688993-25689012 Msa0202850:CDS 30.0%
! TCTCCTTATTTATGATGCAT+AGG - chr2_1:25689426-25689445 Msa0202850:intron 30.0%
CTTCCTATGCATCATAAATA+AGG + chr2_1:25689432-25689451 None:intergenic 30.0%
! ATGATGCATAGGAAGATTTT+CGG - chr2_1:25689437-25689456 Msa0202850:intron 30.0%
! TCTCCTTATTTATGATGCAT+AGG - chr2_1:25689426-25689445 Msa0202850:intron 30.0%
CTTCCTATGCATCATAAATA+AGG + chr2_1:25689432-25689451 None:intergenic 30.0%
! ATGATGCATAGGAAGATTTT+CGG - chr2_1:25689437-25689456 Msa0202850:intron 30.0%
ATTACAATGTATCACAGATC+AGG + chr2_1:25690008-25690027 None:intergenic 30.0%
GATCATTAATCAGAGTGAAA+AGG + chr2_1:25690048-25690067 None:intergenic 30.0%
AAATATACAAGGAAGAGAGA+AGG + chr2_1:25690194-25690213 None:intergenic 30.0%
! TGAGCAACACATATTTTGTA+AGG + chr2_1:25690391-25690410 None:intergenic 30.0%
! TATCCACAAAATAAGTTGAC+GGG + chr2_1:25690801-25690820 None:intergenic 30.0%
!! GCACAAACAATTATTTTTCC+AGG + chr2_1:25690912-25690931 None:intergenic 30.0%
AAGAGTAAAAACCCTAACCA+GGG + chr2_1:25684166-25684185 None:intergenic 35.0%
TCATTACACACACAGCAAAA+GGG + chr2_1:25684480-25684499 None:intergenic 35.0%
ATCATTACACACACAGCAAA+AGG + chr2_1:25684481-25684500 None:intergenic 35.0%
ATAGAACCAGTGAGTTCAAT+CGG - chr2_1:25684536-25684555 Msa0202850:intron 35.0%
AGGGTTTCACAATTCACATA+GGG + chr2_1:25684948-25684967 None:intergenic 35.0%
TAGGGTTTCACAATTCACAT+AGG + chr2_1:25684949-25684968 None:intergenic 35.0%
ACAATCCTACGAAATCTACA+TGG + chr2_1:25685259-25685278 None:intergenic 35.0%
!! TGTTACTGGATTTGGTGTAT+CGG + chr2_1:25685302-25685321 None:intergenic 35.0%
AGCACTTGAGAATAGATGAA+GGG + chr2_1:25685362-25685381 None:intergenic 35.0%
TAGCACTTGAGAATAGATGA+AGG + chr2_1:25685363-25685382 None:intergenic 35.0%
AAGGAGAATCTTTCTCTGTA+TGG - chr2_1:25685570-25685589 Msa0202850:intron 35.0%
TGTAGCTTCAGGAAAAAACA+CGG + chr2_1:25685900-25685919 None:intergenic 35.0%
GTTCTGATTGAGATCATATG+TGG - chr2_1:25686014-25686033 Msa0202850:intron 35.0%
! CTTATGCGGCAATATTGATT+TGG - chr2_1:25686074-25686093 Msa0202850:intron 35.0%
TTGGAACAACGTCACAAAAT+AGG - chr2_1:25686332-25686351 Msa0202850:intron 35.0%
AGGCAAATTCAACATAAAGC+AGG - chr2_1:25686605-25686624 Msa0202850:intron 35.0%
GGCAAATTCAACATAAAGCA+GGG - chr2_1:25686606-25686625 Msa0202850:intron 35.0%
GCAAATTCAACATAAAGCAG+GGG - chr2_1:25686607-25686626 Msa0202850:intron 35.0%
CAAATTCAACATAAAGCAGG+GGG - chr2_1:25686608-25686627 Msa0202850:intron 35.0%
AAATTCAACATAAAGCAGGG+GGG - chr2_1:25686609-25686628 Msa0202850:intron 35.0%
AGGGTATAAAAGAAATGGAC+CGG - chr2_1:25686782-25686801 Msa0202850:intron 35.0%
GAAACAAACATGAACAGAGA+TGG - chr2_1:25686884-25686903 Msa0202850:intron 35.0%
CGGTTACCTCTTGTTAAATT+AGG - chr2_1:25687210-25687229 Msa0202850:intron 35.0%
!!! GCAAGCTTAATGGGTTTTTT+CGG + chr2_1:25687315-25687334 None:intergenic 35.0%
CAGCAACTTAACATCATTCT+CGG + chr2_1:25687432-25687451 None:intergenic 35.0%
! AGAATGATGTTAAGTTGCTG+AGG - chr2_1:25687432-25687451 Msa0202850:intron 35.0%
!! GTGTTTGTAATGATTTGCTG+CGG - chr2_1:25687546-25687565 Msa0202850:intron 35.0%
TCTCTCAATCATTGATGAAG+GGG + chr2_1:25687609-25687628 None:intergenic 35.0%
GATTAAACAACGACTGAGAA+AGG - chr2_1:25688124-25688143 Msa0202850:intron 35.0%
AGAGCAAAGTGGTCAAAATT+TGG - chr2_1:25688217-25688236 Msa0202850:intron 35.0%
GAGCAAAGTGGTCAAAATTT+GGG - chr2_1:25688218-25688237 Msa0202850:intron 35.0%
AGCAAAGTGGTCAAAATTTG+GGG - chr2_1:25688219-25688238 Msa0202850:intron 35.0%
! AAGCTAACCAAAGCACTTTA+TGG - chr2_1:25688449-25688468 Msa0202850:intron 35.0%
! TGAATTTGAGATGAGCATGA+TGG - chr2_1:25688676-25688695 Msa0202850:intron 35.0%
! GAATTTGAGATGAGCATGAT+GGG - chr2_1:25688677-25688696 Msa0202850:intron 35.0%
AGCATAATCAGCATCACAAT+AGG + chr2_1:25689092-25689111 None:intergenic 35.0%
! TATTGTGATGCTGATTATGC+TGG - chr2_1:25689091-25689110 Msa0202850:CDS 35.0%
TCAAAAGAAATAGTGTGGAG+AGG - chr2_1:25689353-25689372 Msa0202850:intron 35.0%
! GACACTTAGCATTGTTTTCA+TGG - chr2_1:25689764-25689783 Msa0202850:intron 35.0%
ATGCTTAGCATTGTTTGCAT+GGG - chr2_1:25689840-25689859 Msa0202850:intron 35.0%
TGATCTGCCAACAATATTTG+AGG - chr2_1:25690063-25690082 Msa0202850:intron 35.0%
GTCACAACCTCAAATATTGT+TGG + chr2_1:25690073-25690092 None:intergenic 35.0%
! ACAATATTTGAGGTTGTGAC+CGG - chr2_1:25690073-25690092 Msa0202850:intron 35.0%
ATATGTGAGAAGTGGTATCA+TGG - chr2_1:25690577-25690596 Msa0202850:intron 35.0%
! CTACCTTTTCCCTGTATATT+GGG - chr2_1:25690866-25690885 Msa0202850:five_prime_UTR 35.0%
TATCCCAATATACAGGGAAA+AGG + chr2_1:25690872-25690891 None:intergenic 35.0%
AAGAGAGAGAAAAAGGGTCA+TGG - chr2_1:25683909-25683928 Msa0202850:three_prime_UTR 40.0%
CTTTAATCAAGCCAGCTCTA+CGG + chr2_1:25684002-25684021 None:intergenic 40.0%
TTGATTAAAGCTCTCACCAC+TGG - chr2_1:25684012-25684031 Msa0202850:three_prime_UTR 40.0%
CAAGAGTAAAAACCCTAACC+AGG + chr2_1:25684167-25684186 None:intergenic 40.0%
CAATGTTGTTAGATCCAGAC+CGG - chr2_1:25684511-25684530 Msa0202850:intron 40.0%
GTTAAACCGATTGAACTCAC+TGG + chr2_1:25684545-25684564 None:intergenic 40.0%
!! ATGAACTGGTTGGTTTGATC+TGG - chr2_1:25684617-25684636 Msa0202850:CDS 40.0%
TTGTCAAAACCAGATCGAAC+TGG + chr2_1:25684659-25684678 None:intergenic 40.0%
! TGCTGCATATGTGTCTGTTT+TGG - chr2_1:25684879-25684898 Msa0202850:intron 40.0%
! GCTGCATATGTGTCTGTTTT+GGG - chr2_1:25684880-25684899 Msa0202850:intron 40.0%
TACAATCCGAGCTGTTCTTA+GGG + chr2_1:25684967-25684986 None:intergenic 40.0%
ATACAATCCGAGCTGTTCTT+AGG + chr2_1:25684968-25684987 None:intergenic 40.0%
! TAGATTTGGGATCATTGCAG+TGG + chr2_1:25685226-25685245 None:intergenic 40.0%
!!! TTTTTTCTGGATTCGGGGTT+GGG + chr2_1:25685326-25685345 None:intergenic 40.0%
!!! TTTTTTTCTGGATTCGGGGT+TGG + chr2_1:25685327-25685346 None:intergenic 40.0%
CTTTCTCTGTATGGATATCC+TGG - chr2_1:25685579-25685598 Msa0202850:intron 40.0%
ATGGATATCCTGGCGAATTA+TGG - chr2_1:25685589-25685608 Msa0202850:intron 40.0%
TGGATATCCTGGCGAATTAT+GGG - chr2_1:25685590-25685609 Msa0202850:intron 40.0%
ATTGGGCATCAACTTTGCTA+GGG - chr2_1:25685662-25685681 Msa0202850:intron 40.0%
ATGGGATGCAAGAAAAGGAT+TGG - chr2_1:25685685-25685704 Msa0202850:intron 40.0%
! TTGCTGTTCACAGTGATACA+TGG - chr2_1:25685718-25685737 Msa0202850:intron 40.0%
!! CTCTCTGTTGCTTTCTACTT+CGG - chr2_1:25685744-25685763 Msa0202850:intron 40.0%
TATAACGATTAACGGAGACG+CGG + chr2_1:25685852-25685871 None:intergenic 40.0%
ATGCTACAACTTGTAGCTTC+AGG + chr2_1:25685911-25685930 None:intergenic 40.0%
CAAGAAACAAGAAGAGGGAA+TGG - chr2_1:25686669-25686688 Msa0202850:intron 40.0%
TTATACCCTATCAACCGAAC+CGG + chr2_1:25686771-25686790 None:intergenic 40.0%
AGATGGATCTTCATCTCTTC+CGG - chr2_1:25686901-25686920 Msa0202850:intron 40.0%
! GATGTTTTGTGTTTCCGGTA+CGG + chr2_1:25686979-25686998 None:intergenic 40.0%
! ACGGTGATGTTTTGTGTTTC+CGG + chr2_1:25686984-25687003 None:intergenic 40.0%
CTTCTTCCTTTACTCCAGAT+CGG - chr2_1:25687263-25687282 Msa0202850:intron 40.0%
!! TTCACTGTTGTTGCTTTAGC+TGG - chr2_1:25687287-25687306 Msa0202850:intron 40.0%
CAATTGGCAGCAAGCTTAAT+GGG + chr2_1:25687324-25687343 None:intergenic 40.0%
TCAATTGGCAGCAAGCTTAA+TGG + chr2_1:25687325-25687344 None:intergenic 40.0%
!! AGCTTGCTGCCAATTGATTT+CGG - chr2_1:25687328-25687347 Msa0202850:intron 40.0%
CTCACAGATCCGAAATCAAT+TGG + chr2_1:25687340-25687359 None:intergenic 40.0%
!! CTTGATTTGCATAGACACTG+TGG - chr2_1:25687389-25687408 Msa0202850:intron 40.0%
CTCTCAATCATTGATGAAGG+GGG + chr2_1:25687608-25687627 None:intergenic 40.0%
ACTGAGACGACTAAAACTTG+CGG - chr2_1:25687894-25687913 Msa0202850:intron 40.0%
ATAGCTTCTAACCTTGCTAC+TGG + chr2_1:25688278-25688297 None:intergenic 40.0%
GTTTATGTAAGTCAACCTCC+TGG - chr2_1:25688392-25688411 Msa0202850:intron 40.0%
TCTTTATCTATGAAGCCAGG+AGG + chr2_1:25688410-25688429 None:intergenic 40.0%
TTAAACAAGCTCCTAGAGCT+TGG - chr2_1:25688474-25688493 Msa0202850:intron 40.0%
AGTCTATCATACCAAGCTCT+AGG + chr2_1:25688488-25688507 None:intergenic 40.0%
AACTTGAGGATGGATGCATA+GGG + chr2_1:25688829-25688848 None:intergenic 40.0%
AAACTTGAGGATGGATGCAT+AGG + chr2_1:25688830-25688849 None:intergenic 40.0%
CTAGTAGGTACTACTGATCT+TGG - chr2_1:25689028-25689047 Msa0202850:CDS 40.0%
AAGTGGAACCTGTCAATTCT+TGG - chr2_1:25689138-25689157 Msa0202850:CDS 40.0%
AGTGGAACCTGTCAATTCTT+GGG - chr2_1:25689139-25689158 Msa0202850:CDS 40.0%
! TTCTTGGGACAAGCTTTGAT+TGG - chr2_1:25689154-25689173 Msa0202850:CDS 40.0%
TGCAAACTATAGGCAGTAGA+TGG + chr2_1:25689545-25689564 None:intergenic 40.0%
ATCAAACATAGAGATGCGCA+TGG + chr2_1:25689822-25689841 None:intergenic 40.0%
GATGCTTAGCATTGTTTGCA+TGG - chr2_1:25689839-25689858 Msa0202850:intron 40.0%
ATTTGTGTGTGCAAGTGCAT+TGG - chr2_1:25689890-25689909 Msa0202850:intron 40.0%
ATCTGCTAAGAAGCAGACTA+AGG - chr2_1:25690096-25690115 Msa0202850:intron 40.0%
AACAGCAACAAGTCAAAGTC+AGG - chr2_1:25690142-25690161 Msa0202850:intron 40.0%
ATAATGCTGAATGGAGTCGT+CGG - chr2_1:25690356-25690375 Msa0202850:intron 40.0%
TATCTGCATCAGATGAGTTC+TGG - chr2_1:25690542-25690561 Msa0202850:intron 40.0%
ACTCTCTTATTGTTGCAAGC+AGG + chr2_1:25690658-25690677 None:intergenic 40.0%
CTTGCAACAATAAGAGAGTC+CGG - chr2_1:25690659-25690678 Msa0202850:intron 40.0%
TCACTTCCCTATGGTATTCA+AGG + chr2_1:25690685-25690704 None:intergenic 40.0%
AGAAGTAACTCACTTCCCTA+TGG + chr2_1:25690694-25690713 None:intergenic 40.0%
!!! AGTCCCGTCAACTTATTTTG+TGG - chr2_1:25690795-25690814 Msa0202850:CDS 40.0%
CCAATATACAGGGAAAAGGT+AGG + chr2_1:25690868-25690887 None:intergenic 40.0%
! CCTACCTTTTCCCTGTATAT+TGG - chr2_1:25690865-25690884 Msa0202850:five_prime_UTR 40.0%
! CATGCTGCATTGGATTTTTC+AGG - chr2_1:25690985-25691004 Msa0202850:five_prime_UTR 40.0%
GAGAGAGAGAGAGAGAGATT+TGG + chr2_1:25683812-25683831 None:intergenic 45.0%
AAAAGGGTCATGGAACTTGC+TGG - chr2_1:25683919-25683938 Msa0202850:three_prime_UTR 45.0%
TCAACAGTACGAGGGTCAAA+CGG + chr2_1:25683955-25683974 None:intergenic 45.0%
AGACAGCTTCAACAGTACGA+GGG + chr2_1:25683963-25683982 None:intergenic 45.0%
AAGACAGCTTCAACAGTACG+AGG + chr2_1:25683964-25683983 None:intergenic 45.0%
GAGAAAGAGAGAGAAACCAG+TGG + chr2_1:25684031-25684050 None:intergenic 45.0%
!! GAACTCACTGGTTCTATCTC+CGG + chr2_1:25684533-25684552 None:intergenic 45.0%
GTGAAACCCTAAGAACAGCT+CGG - chr2_1:25684958-25684977 Msa0202850:intron 45.0%
! GGTTGGGTTGTTACTGGATT+TGG + chr2_1:25685310-25685329 None:intergenic 45.0%
AGAAGTTCCTCCTGAACTTC+CGG - chr2_1:25685632-25685651 Msa0202850:intron 45.0%
CATTGGGCATCAACTTTGCT+AGG - chr2_1:25685661-25685680 Msa0202850:intron 45.0%
GCATCAACTTTGCTAGGGAT+GGG - chr2_1:25685667-25685686 Msa0202850:intron 45.0%
TAGGGATGGGATGCAAGAAA+AGG - chr2_1:25685680-25685699 Msa0202850:intron 45.0%
TTCTACTTCGGCGCAAGATT+TGG - chr2_1:25685756-25685775 Msa0202850:intron 45.0%
!! TTGGCTTTGATAAAGCCGAC+AGG - chr2_1:25685775-25685794 Msa0202850:intron 45.0%
AGGGAATGGACCAAACAAAC+AGG - chr2_1:25686683-25686702 Msa0202850:intron 45.0%
GGGAATGGACCAAACAAACA+GGG - chr2_1:25686684-25686703 Msa0202850:intron 45.0%
ATCTGGATCGGTTAGATCCA+TGG - chr2_1:25686733-25686752 Msa0202850:intron 45.0%
TCTGGATCGGTTAGATCCAT+GGG - chr2_1:25686734-25686753 Msa0202850:intron 45.0%
TCCATGGGTTTGAACAAACC+CGG - chr2_1:25686749-25686768 Msa0202850:intron 45.0%
TATACCCTATCAACCGAACC+GGG + chr2_1:25686770-25686789 None:intergenic 45.0%
! GTCTGCGTTTTCGTGTGTAT+AGG + chr2_1:25687163-25687182 None:intergenic 45.0%
AAACGCAGACAGATGAGTGA+AGG - chr2_1:25687173-25687192 Msa0202850:intron 45.0%
CAGACAGATGAGTGAAGGAA+GGG - chr2_1:25687178-25687197 Msa0202850:intron 45.0%
AGACAGATGAGTGAAGGAAG+GGG - chr2_1:25687179-25687198 Msa0202850:intron 45.0%
TGAAGGAAGGGGTGAAAAGA+CGG - chr2_1:25687190-25687209 Msa0202850:intron 45.0%
! GTGAAACCGATCTGGAGTAA+AGG + chr2_1:25687272-25687291 None:intergenic 45.0%
CAACAACAGTGAAACCGATC+TGG + chr2_1:25687280-25687299 None:intergenic 45.0%
TAACCTTGCTACTGGTGCAA+AGG + chr2_1:25688270-25688289 None:intergenic 45.0%
!! ATGAGCATGATGGGTGAACT+TGG - chr2_1:25688686-25688705 Msa0202850:intron 45.0%
!! GGTGAACTTGGCTTTTTCCT+TGG - chr2_1:25688698-25688717 Msa0202850:intron 45.0%
ACTTGAGGATGGATGCATAG+GGG + chr2_1:25688828-25688847 None:intergenic 45.0%
CCTACTGCAAACACTATGTC+AGG + chr2_1:25688938-25688957 None:intergenic 45.0%
CCTGACATAGTGTTTGCAGT+AGG - chr2_1:25688935-25688954 Msa0202850:intron 45.0%
! GTACTACTGATCTTGGCCTT+TGG - chr2_1:25689035-25689054 Msa0202850:CDS 45.0%
ATGCTGGAGACAAAGTTGAG+AGG - chr2_1:25689107-25689126 Msa0202850:CDS 45.0%
! GTTGAGAGGAAGAGTACAAG+TGG - chr2_1:25689121-25689140 Msa0202850:CDS 45.0%
AGCTTGTCCCAAGAATTGAC+AGG + chr2_1:25689149-25689168 None:intergenic 45.0%
! TGGGACAAGCTTTGATTGGA+TGG - chr2_1:25689158-25689177 Msa0202850:CDS 45.0%
! TTCAGTTGTGGAGAGTGCAA+TGG + chr2_1:25689203-25689222 None:intergenic 45.0%
GACATACTCAGCTTCAGTTG+TGG + chr2_1:25689215-25689234 None:intergenic 45.0%
TCACATCACTCATGCTCATC+AGG - chr2_1:25689667-25689686 Msa0202850:intron 45.0%
CACATCACTCATGCTCATCA+GGG - chr2_1:25689668-25689687 Msa0202850:intron 45.0%
AGTCTGCTTCTTAGCAGATC+CGG + chr2_1:25690095-25690114 None:intergenic 45.0%
CTGTTGTGACTTGAGACAGA+TGG + chr2_1:25690127-25690146 None:intergenic 45.0%
GTCAAAGTCAGGCTCAAAAG+CGG - chr2_1:25690153-25690172 Msa0202850:intron 45.0%
! TCGTCATCTTCTTTTGCTGG+CGG + chr2_1:25690463-25690482 None:intergenic 45.0%
CCAGCAAAAGAAGATGACGA+GGG - chr2_1:25690463-25690482 Msa0202850:intron 45.0%
AAAAGAAGATGACGAGGGAG+TGG - chr2_1:25690468-25690487 Msa0202850:intron 45.0%
TTCCCTATGGTATTCAAGGC+CGG + chr2_1:25690681-25690700 None:intergenic 45.0%
AACTAGTTAGCTGTCCAGCA+TGG + chr2_1:25690733-25690752 None:intergenic 45.0%
GGGACTGAAATGCACGAAAA+TGG + chr2_1:25690781-25690800 None:intergenic 45.0%
TTTGTGATCTGCCACATTCG+CGG - chr2_1:25691008-25691027 Msa0202850:five_prime_UTR 45.0%
!! AATAAAAGTAATAATAAAAA+AGG - chr2_1:25687842-25687861 Msa0202850:intron 5.0%
!! GTCATGGAACTTGCTGGTGA+TGG - chr2_1:25683925-25683944 Msa0202850:three_prime_UTR 50.0%
AGCTGTCTTCCGTGACTTCA+AGG - chr2_1:25683975-25683994 Msa0202850:three_prime_UTR 50.0%
GCTGTCTTCCGTGACTTCAA+GGG - chr2_1:25683976-25683995 Msa0202850:three_prime_UTR 50.0%
! TTTTACCAGCAGTGTGACCC+TGG - chr2_1:25684146-25684165 Msa0202850:CDS 50.0%
TTGAACCAGCCAGTTCGATC+TGG - chr2_1:25684647-25684666 Msa0202850:CDS 50.0%
CAAAACCAGATCGAACTGGC+TGG + chr2_1:25684655-25684674 None:intergenic 50.0%
! ATTCGGGGTTGGGTTGTTAC+TGG + chr2_1:25685316-25685335 None:intergenic 50.0%
GTGACTTCCCATAATTCGCC+AGG + chr2_1:25685600-25685619 None:intergenic 50.0%
TCAGGAGGAACTTCTTCAGC+AGG + chr2_1:25685627-25685646 None:intergenic 50.0%
AATGCAGGTTCCGGAAGTTC+AGG + chr2_1:25685645-25685664 None:intergenic 50.0%
TGAACTTCCGGAACCTGCAT+TGG - chr2_1:25685644-25685663 Msa0202850:intron 50.0%
GAACTTCCGGAACCTGCATT+GGG - chr2_1:25685645-25685664 Msa0202850:intron 50.0%
TTGATGCCCAATGCAGGTTC+CGG + chr2_1:25685654-25685673 None:intergenic 50.0%
!! GCAAAGTTGATGCCCAATGC+AGG + chr2_1:25685660-25685679 None:intergenic 50.0%
GGCATCAACTTTGCTAGGGA+TGG - chr2_1:25685666-25685685 Msa0202850:intron 50.0%
AACCCTACCCATCTCAGACT+GGG + chr2_1:25686710-25686729 None:intergenic 50.0%
AGATGGGTAGGGTTGAGATC+TGG - chr2_1:25686716-25686735 Msa0202850:intron 50.0%
GGTAGGGTTGAGATCTGGAT+CGG - chr2_1:25686721-25686740 Msa0202850:intron 50.0%
! ACCGGGTTTGTTCAAACCCA+TGG + chr2_1:25686753-25686772 None:intergenic 50.0%
GGGTTTGAACAAACCCGGTT+CGG - chr2_1:25686754-25686773 Msa0202850:intron 50.0%
!! ACAAACCCGGTTCGGTTGAT+AGG - chr2_1:25686762-25686781 Msa0202850:intron 50.0%
!! CAAACCCGGTTCGGTTGATA+GGG - chr2_1:25686763-25686782 Msa0202850:intron 50.0%
! GTTTTGTGTTTCCGGTACGG+CGG + chr2_1:25686976-25686995 None:intergenic 50.0%
GCAGACAGATGAGTGAAGGA+AGG - chr2_1:25687177-25687196 Msa0202850:intron 50.0%
TGCTGCGGCTACAGTGTAAT+TGG - chr2_1:25687561-25687580 Msa0202850:intron 50.0%
CAATCATTGATGAAGGGGGC+TGG + chr2_1:25687604-25687623 None:intergenic 50.0%
AGACCTTTGCACCAGTAGCA+AGG - chr2_1:25688264-25688283 Msa0202850:intron 50.0%
ATCACTCATGCTCATCAGGG+AGG - chr2_1:25689671-25689690 Msa0202850:intron 50.0%
GATTGTTTCCTCATGCAGCG+TGG - chr2_1:25690412-25690431 Msa0202850:intron 50.0%
GCCAGCAAAAGAAGATGACG+AGG - chr2_1:25690462-25690481 Msa0202850:intron 50.0%
! CCCTCGTCATCTTCTTTTGC+TGG + chr2_1:25690466-25690485 None:intergenic 50.0%
ACGACGAAGAGGAGGATCAA+GGG - chr2_1:25690491-25690510 Msa0202850:intron 50.0%
GCTGCGACATATGTGAGAAG+TGG - chr2_1:25690569-25690588 Msa0202850:intron 50.0%
AGTCCGGCCTTGAATACCAT+AGG - chr2_1:25690675-25690694 Msa0202850:intron 50.0%
GTCCGGCCTTGAATACCATA+GGG - chr2_1:25690676-25690695 Msa0202850:intron 50.0%
TGTTCGCAAGCATGCTGCAT+TGG - chr2_1:25690975-25690994 Msa0202850:five_prime_UTR 50.0%
CTCTACGGCCCTTGAAGTCA+CGG + chr2_1:25683987-25684006 None:intergenic 55.0%
CAGCAGTGTGACCCTGGTTA+GGG - chr2_1:25684152-25684171 Msa0202850:CDS 55.0%
!! CACTGGTTCTATCTCCGGTC+TGG + chr2_1:25684528-25684547 None:intergenic 55.0%
CAGACTGGGCCCTGTTTGTT+TGG + chr2_1:25686696-25686715 None:intergenic 55.0%
AAACAGGGCCCAGTCTGAGA+TGG - chr2_1:25686699-25686718 Msa0202850:intron 55.0%
! AACAGGGCCCAGTCTGAGAT+GGG - chr2_1:25686700-25686719 Msa0202850:intron 55.0%
CAACCCTACCCATCTCAGAC+TGG + chr2_1:25686711-25686730 None:intergenic 55.0%
GTTCAGATCCACGCTGCATG+AGG + chr2_1:25690423-25690442 None:intergenic 55.0%
CATGCAGCGTGGATCTGAAC+TGG - chr2_1:25690423-25690442 Msa0202850:intron 55.0%
GACGACGAAGAGGAGGATCA+AGG - chr2_1:25690490-25690509 Msa0202850:intron 55.0%
CGACGAAGAGGAGGATCAAG+GGG - chr2_1:25690492-25690511 Msa0202850:intron 55.0%
GTGTGAAGATCACTCCTGCC+CGG - chr2_1:25690605-25690624 Msa0202850:intron 55.0%
TGTGAAGATCACTCCTGCCC+GGG - chr2_1:25690606-25690625 Msa0202850:intron 55.0%
ACTGCTTGATGTGCTCAGCC+CGG + chr2_1:25690627-25690646 None:intergenic 55.0%
TCGCTGCTGTAACTCCATGC+TGG - chr2_1:25690716-25690735 Msa0202850:intron 55.0%
ACGCTCTGATTCCGCGAATG+TGG + chr2_1:25691022-25691041 None:intergenic 55.0%
GACTTCAAGGGCCGTAGAGC+TGG - chr2_1:25683988-25684007 Msa0202850:three_prime_UTR 60.0%
CCTAACCAGGGTCACACTGC+TGG + chr2_1:25684154-25684173 None:intergenic 60.0%
CCAGCAGTGTGACCCTGGTT+AGG - chr2_1:25684151-25684170 Msa0202850:CDS 60.0%
GCAGGTTCCGGAAGTTCAGG+AGG + chr2_1:25685642-25685661 None:intergenic 60.0%
GGGGTGCATGCAGCAGGAAT+GGG - chr2_1:25686628-25686647 Msa0202850:intron 60.0%
GGGTGCATGCAGCAGGAATG+GGG - chr2_1:25686629-25686648 Msa0202850:intron 60.0%
GGTGCATGCAGCAGGAATGG+GGG - chr2_1:25686630-25686649 Msa0202850:intron 60.0%
! GGCCCAGTCTGAGATGGGTA+GGG - chr2_1:25686705-25686724 Msa0202850:intron 60.0%
TGACTCCTACCGCTCCGGTA+CGG - chr2_1:25686924-25686943 Msa0202850:intron 60.0%
CAAGGGGAATGCGCTGCATG+CGG - chr2_1:25690508-25690527 Msa0202850:intron 60.0%
CTGCTTGATGTGCTCAGCCC+GGG + chr2_1:25690626-25690645 None:intergenic 60.0%
! GGGGGTGCATGCAGCAGGAA+TGG - chr2_1:25686627-25686646 Msa0202850:intron 65.0%
! GGGCCCAGTCTGAGATGGGT+AGG - chr2_1:25686704-25686723 Msa0202850:intron 65.0%
TCCGGTGACTCCTACCGCTC+CGG - chr2_1:25686919-25686938 Msa0202850:intron 65.0%
ACCGGAGCGGTAGGAGTCAC+CGG + chr2_1:25686923-25686942 None:intergenic 65.0%
AACCACCGTACCGGAGCGGT+AGG + chr2_1:25686932-25686951 None:intergenic 65.0%
TACCGCTCCGGTACGGTGGT+TGG - chr2_1:25686931-25686950 Msa0202850:intron 65.0%
CGAGGGAGTGGACGACGAAG+AGG - chr2_1:25690480-25690499 Msa0202850:intron 65.0%
GGGAGTGGACGACGAAGAGG+AGG - chr2_1:25690483-25690502 Msa0202850:intron 65.0%
TTGATGTGCTCAGCCCGGGC+AGG + chr2_1:25690622-25690641 None:intergenic 65.0%
! AGCAGGGGGGTGCATGCAGC+AGG - chr2_1:25686622-25686641 Msa0202850:intron 70.0%
CTCCTACCGCTCCGGTACGG+TGG - chr2_1:25686927-25686946 Msa0202850:intron 70.0%
GGCCAACCACCGTACCGGAG+CGG + chr2_1:25686936-25686955 None:intergenic 70.0%
GCTCCGGTACGGTGGTTGGC+CGG - chr2_1:25686935-25686954 Msa0202850:intron 70.0%
! GGTGGTTGGCCGGCCCAACA+GGG - chr2_1:25686945-25686964 Msa0202850:intron 70.0%
GGGCCGGCCAACCACCGTAC+CGG + chr2_1:25686941-25686960 None:intergenic 75.0%
! CGGTGGTTGGCCGGCCCAAC+AGG - chr2_1:25686944-25686963 Msa0202850:intron 75.0%
! GGTTGGCCGGCCCAACAGGG+CGG - chr2_1:25686948-25686967 Msa0202850:intron 75.0%
TACGGCGGCGCCGCCCTGTT+GGG + chr2_1:25686961-25686980 None:intergenic 75.0%
! GTACGGCGGCGCCGCCCTGT+TGG + chr2_1:25686962-25686981 None:intergenic 80.0%
! ACAGGGCGGCGCCGCCGTAC+CGG - chr2_1:25686962-25686981 Msa0202850:intron 80.0%
! GCGGCGCCGCCCTGTTGGGC+CGG + chr2_1:25686957-25686976 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 25683729 25691048 25683729 ID=Msa0202850;Name=Msa0202850
chr2_1 mRNA 25683729 25691048 25683729 ID=Msa0202850-mRNA-1;Parent=Msa0202850;Name=Msa0202850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=173|1|1|1|0.8|0.66|6|361|253
chr2_1 exon 25683729 25684347 25683729 ID=Msa0202850-mRNA-1:exon:9788;Parent=Msa0202850-mRNA-1
chr2_1 exon 25684603 25684738 25684603 ID=Msa0202850-mRNA-1:exon:9787;Parent=Msa0202850-mRNA-1
chr2_1 exon 25688981 25689209 25688981 ID=Msa0202850-mRNA-1:exon:9786;Parent=Msa0202850-mRNA-1
chr2_1 exon 25690610 25690642 25690610 ID=Msa0202850-mRNA-1:exon:9785;Parent=Msa0202850-mRNA-1
chr2_1 exon 25690744 25690936 25690744 ID=Msa0202850-mRNA-1:exon:9784;Parent=Msa0202850-mRNA-1
chr2_1 exon 25690963 25691048 25690963 ID=Msa0202850-mRNA-1:exon:9783;Parent=Msa0202850-mRNA-1
chr2_1 five_prime_UTR 25690963 25691048 25690963 ID=Msa0202850-mRNA-1:five_prime_utr;Parent=Msa0202850-mRNA-1
chr2_1 five_prime_UTR 25690850 25690936 25690850 ID=Msa0202850-mRNA-1:five_prime_utr;Parent=Msa0202850-mRNA-1
chr2_1 CDS 25690744 25690849 25690744 ID=Msa0202850-mRNA-1:cds;Parent=Msa0202850-mRNA-1
chr2_1 CDS 25690610 25690642 25690610 ID=Msa0202850-mRNA-1:cds;Parent=Msa0202850-mRNA-1
chr2_1 CDS 25688981 25689209 25688981 ID=Msa0202850-mRNA-1:cds;Parent=Msa0202850-mRNA-1
chr2_1 CDS 25684603 25684738 25684603 ID=Msa0202850-mRNA-1:cds;Parent=Msa0202850-mRNA-1
chr2_1 CDS 25684090 25684347 25684090 ID=Msa0202850-mRNA-1:cds;Parent=Msa0202850-mRNA-1
chr2_1 three_prime_UTR 25683729 25684089 25683729 ID=Msa0202850-mRNA-1:three_prime_utr;Parent=Msa0202850-mRNA-1
Gene Sequence

>Msa0202850

ATGGAACTTGCTGGTGATGGAACTCCGTTTGACCCTCGTACTGTTGAAGCTGTCTTCCGTGACTTCAAGGGCCGTAGAGCTGGCTTGATTAAAGCTCTCACCACTGATGTTGAAGATTTTTACCAGCAGTGTGACCCTGAAAAGGAGAATCTTTCTCTGTATGGATATCCTGGCGAATTATGGGAAGTCACTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCGGAACCTGCATTGGGCATCAACTTTGCTAGGGATGGGATGCAAGAAAAGGATTGGCTATCTTTAGTTGCTGTTCACAGTGATACATGGCTTCTCTCTGTTGCTTTCTACTTCGGCGCAAGATTTGGCTTTGATAAAGCCGACAGGAAACGCCTTTTCACTCTGATTAATGATCTGCCAACAATATTTGAGGTTGTGACCGGATCTGCTAAGAAGCAGACTAAGGAAAAGCCATCTGTCTCAAGTCACAACAGCAACAAGTCAAAGTCAGGCTCAAAAGCGCGTGGATCTGAACTGGCAAAGTATTCAAAGCCGCCAGCAAAAGAAGATGACGAGGGAGTGGACGACGAAGAGGAGGATCAAGGGGAATGCGCTGCATGCGGTGAAAGCTATGTATCTGCATCAGATGAGTTCTGGATCTGCTGCGACATATGTGAGAAGTGGTATCATGGAAAATGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAGCAGTACAAGTGTCCTGCTTGCAACAATAAGAGAGTCCGGCCTTGA

Protein sequence

>Msa0202850

MELAGDGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKRLFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEGVDDEEEDQGECAACGESYVSASDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP*