Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202990 | KEH37559.1 | 97.541 | 122 | 3 | 0 | 1 | 122 | 1 | 122 | 1.22e-83 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202990 | sp|Q8L8A6|GRF5_ARATH | 71.681 | 113 | 28 | 2 | 7 | 119 | 16 | 124 | 5.18e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202990 | A0A072V671 | 97.541 | 122 | 3 | 0 | 1 | 122 | 1 | 122 | 5.84e-84 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0202990 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202990 | MtrunA17_Chr2g0300511 | 97.541 | 122 | 3 | 0 | 1 | 122 | 1 | 122 | 1.92e-87 | 259 |
| Msa0202990 | MtrunA17_Chr4g0070591 | 82.540 | 126 | 18 | 2 | 3 | 128 | 5 | 126 | 4.81e-72 | 220 |
| Msa0202990 | MtrunA17_Chr8g0343881 | 68.908 | 119 | 33 | 2 | 2 | 120 | 6 | 120 | 5.90e-58 | 183 |
| Msa0202990 | MtrunA17_Chr4g0021261 | 62.016 | 129 | 31 | 4 | 7 | 130 | 25 | 140 | 5.78e-47 | 154 |
| Msa0202990 | MtrunA17_Chr1g0152191 | 55.833 | 120 | 53 | 0 | 7 | 126 | 144 | 263 | 3.23e-42 | 147 |
| Msa0202990 | MtrunA17_Chr5g0409471 | 60.177 | 113 | 29 | 2 | 7 | 119 | 16 | 112 | 2.88e-41 | 139 |
| Msa0202990 | MtrunA17_Chr7g0265931 | 54.688 | 128 | 43 | 4 | 2 | 120 | 66 | 187 | 6.94e-36 | 127 |
| Msa0202990 | MtrunA17_Chr3g0127641 | 46.610 | 118 | 41 | 3 | 7 | 124 | 112 | 207 | 1.50e-28 | 108 |
| Msa0202990 | MtrunA17_Chr8g0351521 | 43.697 | 119 | 45 | 3 | 3 | 119 | 50 | 148 | 1.27e-23 | 94.7 |
| Msa0202990 | MtrunA17_Chr8g0351521 | 66.667 | 39 | 13 | 0 | 75 | 113 | 302 | 340 | 3.02e-13 | 65.5 |
| Msa0202990 | MtrunA17_Chr8g0351291 | 56.522 | 46 | 20 | 0 | 75 | 120 | 51 | 96 | 7.30e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202990 | AT3G13960.1 | 71.681 | 113 | 28 | 2 | 7 | 119 | 16 | 124 | 5.27e-56 | 180 |
| Msa0202990 | AT2G06200.1 | 64.167 | 120 | 36 | 2 | 5 | 117 | 4 | 123 | 3.39e-48 | 155 |
| Msa0202990 | AT2G06200.2 | 63.636 | 121 | 37 | 2 | 4 | 117 | 42 | 162 | 3.75e-48 | 156 |
| Msa0202990 | AT4G37740.1 | 51.908 | 131 | 55 | 4 | 5 | 134 | 162 | 285 | 8.96e-40 | 140 |
| Msa0202990 | AT2G36400.1 | 58.407 | 113 | 44 | 2 | 8 | 119 | 77 | 187 | 4.98e-36 | 128 |
| Msa0202990 | AT3G52910.1 | 55.172 | 116 | 44 | 4 | 8 | 119 | 83 | 194 | 3.78e-34 | 122 |
| Msa0202990 | AT2G22840.1 | 56.034 | 116 | 43 | 4 | 5 | 119 | 131 | 239 | 4.96e-34 | 124 |
| Msa0202990 | AT2G06200.3 | 92.157 | 51 | 2 | 1 | 69 | 117 | 1 | 51 | 4.57e-27 | 99.8 |
| Msa0202990 | AT5G53660.1 | 49.123 | 114 | 37 | 3 | 6 | 119 | 58 | 150 | 8.75e-27 | 103 |
| Msa0202990 | AT4G24150.3 | 43.200 | 125 | 60 | 3 | 1 | 119 | 104 | 223 | 1.12e-24 | 98.2 |
| Msa0202990 | AT4G24150.1 | 41.007 | 139 | 53 | 3 | 8 | 119 | 150 | 286 | 1.24e-24 | 98.2 |
| Msa0202990 | AT4G24150.2 | 43.200 | 125 | 60 | 3 | 1 | 119 | 142 | 261 | 1.26e-24 | 98.2 |
| Msa0202990 | AT2G45480.2 | 39.669 | 121 | 56 | 3 | 3 | 116 | 19 | 129 | 1.24e-18 | 80.5 |
| Msa0202990 | AT2G45480.3 | 39.669 | 121 | 56 | 3 | 3 | 116 | 19 | 129 | 5.66e-18 | 79.3 |
| Msa0202990 | AT2G45480.3 | 60.417 | 48 | 18 | 1 | 72 | 119 | 303 | 349 | 9.08e-14 | 67.4 |
| Msa0202990 | AT2G45480.1 | 39.669 | 121 | 56 | 3 | 3 | 116 | 17 | 127 | 5.80e-18 | 79.3 |
| Msa0202990 | AT2G45480.1 | 60.417 | 48 | 18 | 1 | 72 | 119 | 301 | 347 | 9.15e-14 | 67.4 |
Find 26 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATTGTGATGGAGTAAA+AGG | 0.243712 | 2_1:+26148421 | None:intergenic |
| CTTTCACAATATTTAGAATC+TGG | 0.287060 | 2_1:+26147516 | None:intergenic |
| ATTTACAAGTATATGGCTTC+TGG | 0.291564 | 2_1:-26148376 | Msa0202990:CDS |
| AGCTCTTATTTACAAGTATA+TGG | 0.299426 | 2_1:-26148383 | Msa0202990:CDS |
| AACTATCTGCAAATGGGTTT+AGG | 0.375973 | 2_1:-26147615 | Msa0202990:CDS |
| TGCAAGGAGAATGAAGTTAC+TGG | 0.391304 | 2_1:-26147270 | Msa0202990:CDS |
| GAAGAACAGATGGAAAGAAA+TGG | 0.403362 | 2_1:-26147560 | Msa0202990:CDS |
| CTTCTACATCTACCTGGCTC+TGG | 0.445022 | 2_1:+26147579 | None:intergenic |
| TGGATGGAACTATCTGCAAA+TGG | 0.447963 | 2_1:-26147622 | Msa0202990:CDS |
| TTGGTAAGGTAGACGCTGAT+AGG | 0.460291 | 2_1:+26147295 | None:intergenic |
| ATTCTCCTTGCACCTTGGTA+AGG | 0.465903 | 2_1:+26147281 | None:intergenic |
| CAGTGTTGGTGTTGTTGAGT+AGG | 0.494839 | 2_1:+26148277 | None:intergenic |
| CTCTCGGTAGTTCTACAAAC+GGG | 0.499015 | 2_1:-26147322 | Msa0202990:intron |
| GGATGGAACTATCTGCAAAT+GGG | 0.512539 | 2_1:-26147621 | Msa0202990:CDS |
| TGGTAAGGTAGACGCTGATA+GGG | 0.539865 | 2_1:+26147296 | None:intergenic |
| CCTCTCGGTAGTTCTACAAA+CGG | 0.553923 | 2_1:-26147323 | Msa0202990:intron |
| GGTAGATGTAGAAGAACAGA+TGG | 0.565829 | 2_1:-26147570 | Msa0202990:CDS |
| TCAAGTTCTTGCCATTGTGA+TGG | 0.567945 | 2_1:+26148412 | None:intergenic |
| ACTTCATTCTCCTTGCACCT+TGG | 0.574225 | 2_1:+26147276 | None:intergenic |
| TCTGTTCTTCTACATCTACC+TGG | 0.588963 | 2_1:+26147573 | None:intergenic |
| TGTGAAAGACACATGCATAG+AGG | 0.590712 | 2_1:-26147501 | Msa0202990:CDS |
| GCAAGGAGAATGAAGTTACT+GGG | 0.596245 | 2_1:-26147269 | Msa0202990:CDS |
| GTCTACCTTACCAAGGTGCA+AGG | 0.607221 | 2_1:-26147286 | Msa0202990:CDS |
| AGAGAAAGGACTTACAGTGT+TGG | 0.629687 | 2_1:+26148263 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 2_1:-26147475 | Msa0202990:CDS |
| TATCAGCGTCTACCTTACCA+AGG | 0.719838 | 2_1:-26147293 | Msa0202990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAGATAATTTAGTTAA+AGG | - | chr2_1:26147983-26148002 | Msa0202990:intron | 15.0% |
| !!! | TTATTTTGATTTTTTTCAGT+TGG | - | chr2_1:26148057-26148076 | Msa0202990:intron | 15.0% |
| !! | TATAGAGATAATTTAGTTAA+AGG | - | chr2_1:26147983-26148002 | Msa0202990:intron | 15.0% |
| !!! | TTATTTTGATTTTTTTCAGT+TGG | - | chr2_1:26148057-26148076 | Msa0202990:intron | 15.0% |
| !!! | AGTATGTTTTAAACTCTTAA+CGG | + | chr2_1:26147479-26147498 | None:intergenic | 20.0% |
| !!! | TTTAAAGCAAATTTAGAAAG+TGG | - | chr2_1:26147645-26147664 | Msa0202990:intron | 20.0% |
| !!! | TATATTATATCAAAGGTGTT+AGG | + | chr2_1:26147767-26147786 | None:intergenic | 20.0% |
| !! | GAAGATGTATATTATATCAA+AGG | + | chr2_1:26147774-26147793 | None:intergenic | 20.0% |
| !!! | CTATACATTCATAATCTTTT+AGG | + | chr2_1:26147968-26147987 | None:intergenic | 20.0% |
| !! | AAAAAATCAAAATAACCCTT+TGG | + | chr2_1:26148052-26148071 | None:intergenic | 20.0% |
| !!! | AGTATGTTTTAAACTCTTAA+CGG | + | chr2_1:26147479-26147498 | None:intergenic | 20.0% |
| !!! | TTTAAAGCAAATTTAGAAAG+TGG | - | chr2_1:26147645-26147664 | Msa0202990:intron | 20.0% |
| !!! | TATATTATATCAAAGGTGTT+AGG | + | chr2_1:26147767-26147786 | None:intergenic | 20.0% |
| !! | GAAGATGTATATTATATCAA+AGG | + | chr2_1:26147774-26147793 | None:intergenic | 20.0% |
| !!! | CTATACATTCATAATCTTTT+AGG | + | chr2_1:26147968-26147987 | None:intergenic | 20.0% |
| !! | AAAAAATCAAAATAACCCTT+TGG | + | chr2_1:26148052-26148071 | None:intergenic | 20.0% |
| !! | AGCTCTTATTTACAAGTATA+TGG | - | chr2_1:26147316-26147335 | Msa0202990:intron | 25.0% |
| ! | ACATATGAATATAGAGAGAA+AGG | + | chr2_1:26147453-26147472 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTTTCAGTTGGA+TGG | - | chr2_1:26148061-26148080 | Msa0202990:intron | 25.0% |
| !! | CTTTCACAATATTTAGAATC+TGG | + | chr2_1:26148186-26148205 | None:intergenic | 25.0% |
| !! | AGCTCTTATTTACAAGTATA+TGG | - | chr2_1:26147316-26147335 | Msa0202990:intron | 25.0% |
| ! | ACATATGAATATAGAGAGAA+AGG | + | chr2_1:26147453-26147472 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTTTCAGTTGGA+TGG | - | chr2_1:26148061-26148080 | Msa0202990:intron | 25.0% |
| !! | CTTTCACAATATTTAGAATC+TGG | + | chr2_1:26148186-26148205 | None:intergenic | 25.0% |
| ATTTACAAGTATATGGCTTC+TGG | - | chr2_1:26147323-26147342 | Msa0202990:intron | 30.0% | |
| TACCATCAGAAAAAGCTATT+TGG | - | chr2_1:26147373-26147392 | Msa0202990:intron | 30.0% | |
| !! | GTATTTTTGTGTGTTGCAAA+CGG | + | chr2_1:26147813-26147832 | None:intergenic | 30.0% |
| TTAGCAAAGAAGCTAGTATT+TGG | + | chr2_1:26147881-26147900 | None:intergenic | 30.0% | |
| ATTTACAAGTATATGGCTTC+TGG | - | chr2_1:26147323-26147342 | Msa0202990:intron | 30.0% | |
| TACCATCAGAAAAAGCTATT+TGG | - | chr2_1:26147373-26147392 | Msa0202990:intron | 30.0% | |
| !! | GTATTTTTGTGTGTTGCAAA+CGG | + | chr2_1:26147813-26147832 | None:intergenic | 30.0% |
| TTAGCAAAGAAGCTAGTATT+TGG | + | chr2_1:26147881-26147900 | None:intergenic | 30.0% | |
| ! | TTCCTTTTACTCCATCACAA+TGG | - | chr2_1:26147276-26147295 | Msa0202990:CDS | 35.0% |
| ATGGTAAAAAGAAGATCAGG+TGG | + | chr2_1:26147359-26147378 | None:intergenic | 35.0% | |
| CTGATGGTAAAAAGAAGATC+AGG | + | chr2_1:26147362-26147381 | None:intergenic | 35.0% | |
| !! | GTCCAAATAGCTTTTTCTGA+TGG | + | chr2_1:26147378-26147397 | None:intergenic | 35.0% |
| GGAAAAAGTCTTGAAGAAAG+AGG | + | chr2_1:26147404-26147423 | None:intergenic | 35.0% | |
| TATACATCTTCCTCTGTGTT+TGG | - | chr2_1:26147783-26147802 | Msa0202990:intron | 35.0% | |
| TGCAACACACAAAAATACGT+TGG | - | chr2_1:26147815-26147834 | Msa0202990:intron | 35.0% | |
| AAATGAGTCTCTTTGACCAA+AGG | - | chr2_1:26148033-26148052 | Msa0202990:intron | 35.0% | |
| AATGAGTCTCTTTGACCAAA+GGG | - | chr2_1:26148034-26148053 | Msa0202990:intron | 35.0% | |
| ! | AACTATCTGCAAATGGGTTT+AGG | - | chr2_1:26148084-26148103 | Msa0202990:intron | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr2_1:26148139-26148158 | Msa0202990:intron | 35.0% | |
| ! | TTCCTTTTACTCCATCACAA+TGG | - | chr2_1:26147276-26147295 | Msa0202990:CDS | 35.0% |
| ATGGTAAAAAGAAGATCAGG+TGG | + | chr2_1:26147359-26147378 | None:intergenic | 35.0% | |
| CTGATGGTAAAAAGAAGATC+AGG | + | chr2_1:26147362-26147381 | None:intergenic | 35.0% | |
| !! | GTCCAAATAGCTTTTTCTGA+TGG | + | chr2_1:26147378-26147397 | None:intergenic | 35.0% |
| GGAAAAAGTCTTGAAGAAAG+AGG | + | chr2_1:26147404-26147423 | None:intergenic | 35.0% | |
| TATACATCTTCCTCTGTGTT+TGG | - | chr2_1:26147783-26147802 | Msa0202990:intron | 35.0% | |
| TGCAACACACAAAAATACGT+TGG | - | chr2_1:26147815-26147834 | Msa0202990:intron | 35.0% | |
| AAATGAGTCTCTTTGACCAA+AGG | - | chr2_1:26148033-26148052 | Msa0202990:intron | 35.0% | |
| AATGAGTCTCTTTGACCAAA+GGG | - | chr2_1:26148034-26148053 | Msa0202990:intron | 35.0% | |
| ! | AACTATCTGCAAATGGGTTT+AGG | - | chr2_1:26148084-26148103 | Msa0202990:intron | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr2_1:26148139-26148158 | Msa0202990:intron | 35.0% | |
| ! | TGCCATTGTGATGGAGTAAA+AGG | + | chr2_1:26147281-26147300 | None:intergenic | 40.0% |
| TCAAGTTCTTGCCATTGTGA+TGG | + | chr2_1:26147290-26147309 | None:intergenic | 40.0% | |
| AGAGAAAGGACTTACAGTGT+TGG | + | chr2_1:26147439-26147458 | None:intergenic | 40.0% | |
| !! | TATCAAAGGTGTTAGGTCAG+TGG | + | chr2_1:26147760-26147779 | None:intergenic | 40.0% |
| AAACGGATAACCAAACACAG+AGG | + | chr2_1:26147796-26147815 | None:intergenic | 40.0% | |
| ! | TACTAGCTTCTTTGCTAACG+TGG | - | chr2_1:26147883-26147902 | Msa0202990:intron | 40.0% |
| GTTTGCAAAACGGTGTTTGA+TGG | + | chr2_1:26147925-26147944 | None:intergenic | 40.0% | |
| TTCGTACAGCGTTTGCAAAA+CGG | + | chr2_1:26147935-26147954 | None:intergenic | 40.0% | |
| TGGATGGAACTATCTGCAAA+TGG | - | chr2_1:26148077-26148096 | Msa0202990:intron | 40.0% | |
| GGATGGAACTATCTGCAAAT+GGG | - | chr2_1:26148078-26148097 | Msa0202990:intron | 40.0% | |
| AGAAAAATAGATCCAGAGCC+AGG | - | chr2_1:26148108-26148127 | Msa0202990:intron | 40.0% | |
| TCTGTTCTTCTACATCTACC+TGG | + | chr2_1:26148129-26148148 | None:intergenic | 40.0% | |
| GGTAGATGTAGAAGAACAGA+TGG | - | chr2_1:26148129-26148148 | Msa0202990:intron | 40.0% | |
| TGTGAAAGACACATGCATAG+AGG | - | chr2_1:26148198-26148217 | Msa0202990:intron | 40.0% | |
| TGCAAGGAGAATGAAGTTAC+TGG | - | chr2_1:26148429-26148448 | Msa0202990:CDS | 40.0% | |
| GCAAGGAGAATGAAGTTACT+GGG | - | chr2_1:26148430-26148449 | Msa0202990:CDS | 40.0% | |
| ! | TGCCATTGTGATGGAGTAAA+AGG | + | chr2_1:26147281-26147300 | None:intergenic | 40.0% |
| TCAAGTTCTTGCCATTGTGA+TGG | + | chr2_1:26147290-26147309 | None:intergenic | 40.0% | |
| AGAGAAAGGACTTACAGTGT+TGG | + | chr2_1:26147439-26147458 | None:intergenic | 40.0% | |
| !! | TATCAAAGGTGTTAGGTCAG+TGG | + | chr2_1:26147760-26147779 | None:intergenic | 40.0% |
| AAACGGATAACCAAACACAG+AGG | + | chr2_1:26147796-26147815 | None:intergenic | 40.0% | |
| ! | TACTAGCTTCTTTGCTAACG+TGG | - | chr2_1:26147883-26147902 | Msa0202990:intron | 40.0% |
| GTTTGCAAAACGGTGTTTGA+TGG | + | chr2_1:26147925-26147944 | None:intergenic | 40.0% | |
| TTCGTACAGCGTTTGCAAAA+CGG | + | chr2_1:26147935-26147954 | None:intergenic | 40.0% | |
| TGGATGGAACTATCTGCAAA+TGG | - | chr2_1:26148077-26148096 | Msa0202990:intron | 40.0% | |
| GGATGGAACTATCTGCAAAT+GGG | - | chr2_1:26148078-26148097 | Msa0202990:intron | 40.0% | |
| AGAAAAATAGATCCAGAGCC+AGG | - | chr2_1:26148108-26148127 | Msa0202990:intron | 40.0% | |
| TCTGTTCTTCTACATCTACC+TGG | + | chr2_1:26148129-26148148 | None:intergenic | 40.0% | |
| GGTAGATGTAGAAGAACAGA+TGG | - | chr2_1:26148129-26148148 | Msa0202990:intron | 40.0% | |
| TGTGAAAGACACATGCATAG+AGG | - | chr2_1:26148198-26148217 | Msa0202990:intron | 40.0% | |
| TGCAAGGAGAATGAAGTTAC+TGG | - | chr2_1:26148429-26148448 | Msa0202990:CDS | 40.0% | |
| GCAAGGAGAATGAAGTTACT+GGG | - | chr2_1:26148430-26148449 | Msa0202990:CDS | 40.0% | |
| !! | CAGTGTTGGTGTTGTTGAGT+AGG | + | chr2_1:26147425-26147444 | None:intergenic | 45.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr2_1:26148224-26148243 | Msa0202990:intron | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr2_1:26148230-26148249 | None:intergenic | 45.0% | |
| CGTTTGTAGAACTACCGAGA+GGG | + | chr2_1:26148378-26148397 | None:intergenic | 45.0% | |
| ! | CCTCTCGGTAGTTCTACAAA+CGG | - | chr2_1:26148376-26148395 | Msa0202990:CDS | 45.0% |
| ! | CTCTCGGTAGTTCTACAAAC+GGG | - | chr2_1:26148377-26148396 | Msa0202990:CDS | 45.0% |
| TGGTAAGGTAGACGCTGATA+GGG | + | chr2_1:26148406-26148425 | None:intergenic | 45.0% | |
| TTGGTAAGGTAGACGCTGAT+AGG | + | chr2_1:26148407-26148426 | None:intergenic | 45.0% | |
| TATCAGCGTCTACCTTACCA+AGG | - | chr2_1:26148406-26148425 | Msa0202990:CDS | 45.0% | |
| ATTCTCCTTGCACCTTGGTA+AGG | + | chr2_1:26148421-26148440 | None:intergenic | 45.0% | |
| ACTTCATTCTCCTTGCACCT+TGG | + | chr2_1:26148426-26148445 | None:intergenic | 45.0% | |
| !! | CAGTGTTGGTGTTGTTGAGT+AGG | + | chr2_1:26147425-26147444 | None:intergenic | 45.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr2_1:26148224-26148243 | Msa0202990:intron | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr2_1:26148230-26148249 | None:intergenic | 45.0% | |
| CGTTTGTAGAACTACCGAGA+GGG | + | chr2_1:26148378-26148397 | None:intergenic | 45.0% | |
| ! | CCTCTCGGTAGTTCTACAAA+CGG | - | chr2_1:26148376-26148395 | Msa0202990:CDS | 45.0% |
| ! | CTCTCGGTAGTTCTACAAAC+GGG | - | chr2_1:26148377-26148396 | Msa0202990:CDS | 45.0% |
| TGGTAAGGTAGACGCTGATA+GGG | + | chr2_1:26148406-26148425 | None:intergenic | 45.0% | |
| TTGGTAAGGTAGACGCTGAT+AGG | + | chr2_1:26148407-26148426 | None:intergenic | 45.0% | |
| TATCAGCGTCTACCTTACCA+AGG | - | chr2_1:26148406-26148425 | Msa0202990:CDS | 45.0% | |
| ATTCTCCTTGCACCTTGGTA+AGG | + | chr2_1:26148421-26148440 | None:intergenic | 45.0% | |
| ACTTCATTCTCCTTGCACCT+TGG | + | chr2_1:26148426-26148445 | None:intergenic | 45.0% | |
| CTTCTACATCTACCTGGCTC+TGG | + | chr2_1:26148123-26148142 | None:intergenic | 50.0% | |
| ACACTGCACAATCTCCCTCT+CGG | - | chr2_1:26148361-26148380 | Msa0202990:CDS | 50.0% | |
| CCGTTTGTAGAACTACCGAG+AGG | + | chr2_1:26148379-26148398 | None:intergenic | 50.0% | |
| GTCTACCTTACCAAGGTGCA+AGG | - | chr2_1:26148413-26148432 | Msa0202990:CDS | 50.0% | |
| CTTCTACATCTACCTGGCTC+TGG | + | chr2_1:26148123-26148142 | None:intergenic | 50.0% | |
| ACACTGCACAATCTCCCTCT+CGG | - | chr2_1:26148361-26148380 | Msa0202990:CDS | 50.0% | |
| CCGTTTGTAGAACTACCGAG+AGG | + | chr2_1:26148379-26148398 | None:intergenic | 50.0% | |
| GTCTACCTTACCAAGGTGCA+AGG | - | chr2_1:26148413-26148432 | Msa0202990:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 26147260 | 26148461 | 26147260 | ID=Msa0202990;Name=Msa0202990 |
| chr2_1 | mRNA | 26147260 | 26148461 | 26147260 | ID=Msa0202990-mRNA-1;Parent=Msa0202990;Name=Msa0202990-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0|0.66|1|1|3|0|143 |
| chr2_1 | exon | 26148278 | 26148461 | 26148278 | ID=Msa0202990-mRNA-1:exon:9864;Parent=Msa0202990-mRNA-1 |
| chr2_1 | exon | 26147473 | 26147645 | 26147473 | ID=Msa0202990-mRNA-1:exon:9863;Parent=Msa0202990-mRNA-1 |
| chr2_1 | exon | 26147260 | 26147334 | 26147260 | ID=Msa0202990-mRNA-1:exon:9862;Parent=Msa0202990-mRNA-1 |
| chr2_1 | CDS | 26148278 | 26148461 | 26148278 | ID=Msa0202990-mRNA-1:cds;Parent=Msa0202990-mRNA-1 |
| chr2_1 | CDS | 26147473 | 26147645 | 26147473 | ID=Msa0202990-mRNA-1:cds;Parent=Msa0202990-mRNA-1 |
| chr2_1 | CDS | 26147260 | 26147334 | 26147260 | ID=Msa0202990-mRNA-1:cds;Parent=Msa0202990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
